BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6084
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NQT8|KI13B_HUMAN Kinesin-like protein KIF13B OS=Homo sapiens GN=KIF13B PE=1 SV=1
Length = 1826
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 6/98 (6%)
Query: 12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESR 71
+PEW+ GE V + + + GV+ Y+GP +F GTWVGVELD P+GKNDG++ G +YF
Sbjct: 1697 VPEWLREGEFVTVGAHKT-GVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCN 1755
Query: 72 PKHGIFVRADKLIQ-----DRRGRAMRSGGTGAMRRST 104
P +G+ VR ++ + RR +R G A R +T
Sbjct: 1756 PGYGLLVRPSRVRRATGPVRRRSTGLRLGAPEARRSAT 1793
>sp|Q9VJE5|CL190_DROME Restin homolog OS=Drosophila melanogaster GN=CLIP-190 PE=1 SV=1
Length = 1690
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 47/75 (62%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGR 90
G++ Y+G T+FA G W GVELD P+GKNDGTV RYFE +PK+G+FV K+ +
Sbjct: 254 GILRYLGETQFAPGNWCGVELDEPSGKNDGTVDDIRYFECKPKYGVFVPIAKVSLSPSSK 313
Query: 91 AMRSGGTGAMRRSTS 105
R TG+ TS
Sbjct: 314 KTRLSRTGSRESLTS 328
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/53 (62%), Positives = 36/53 (67%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 83
G IA+IG T FAAG W GV LD P GKNDG V G RYF+ PK GIF R +L
Sbjct: 137 GQIAFIGDTHFAAGEWAGVVLDEPNGKNDGCVSGKRYFQCEPKRGIFSRLTRL 189
>sp|P30622|CLIP1_HUMAN CAP-Gly domain-containing linker protein 1 OS=Homo sapiens GN=CLIP1
PE=1 SV=2
Length = 1438
Score = 76.3 bits (186), Expect = 5e-14, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G+ VL+ +GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +PK+G+F
Sbjct: 214 IGDRVLVGG-TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 272
Query: 78 VRADKLIQ 85
K+ +
Sbjct: 273 APVHKVTK 280
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+GE V + N G I ++G T+FA G W G+ LD P GKNDG+V G RYF+ P GIF
Sbjct: 60 VGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIF 118
Query: 78 VRADKLIQDRRGRAMRSG-GTGAMRRSTS 105
R KL + + +G T R+TS
Sbjct: 119 TRPSKLTRKVQAEDEANGLQTTPASRATS 147
>sp|Q922J3|CLIP1_MOUSE CAP-Gly domain-containing linker protein 1 OS=Mus musculus GN=Clip1
PE=1 SV=1
Length = 1391
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G+ VL+ +GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +PK+G+F
Sbjct: 213 VGDRVLVGG-TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 271
Query: 78 VRADKLIQ 85
K+ +
Sbjct: 272 APVHKVTK 279
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+GE V + N G I ++G T+FA G W G+ LD P GKNDG+V G RYF+ P GIF
Sbjct: 60 VGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIF 118
Query: 78 VRADKLIQDRRGRAMRSGGTGAMRRSTS 105
R KL + + +G A R+ S
Sbjct: 119 TRPSKLTRKVQAEDEANGLQAAPGRTAS 146
>sp|O55156|CLIP2_RAT CAP-Gly domain-containing linker protein 2 OS=Rattus norvegicus
GN=Clip2 PE=1 SV=1
Length = 1046
Score = 75.5 bits (184), Expect = 8e-14, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
LG+ VL+ +GV+ Y+G T+FA G W GVELD P GKNDG V GTRYF+ PK G+F
Sbjct: 222 LGDRVLVGG-TKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLF 280
Query: 78 VRADKLIQ 85
K+I+
Sbjct: 281 APIHKVIR 288
Score = 68.9 bits (167), Expect = 8e-12, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGR 90
GV+ Y+G T+FA G W GV LD P GKNDG V G RYFE GIF R KL R+
Sbjct: 94 GVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGLRYFECPALQGIFTRPSKLT--RQPA 151
Query: 91 AMRSGGTG 98
A SG G
Sbjct: 152 AEGSGSDG 159
>sp|Q9Z0H8|CLIP2_MOUSE CAP-Gly domain-containing linker protein 2 OS=Mus musculus GN=Clip2
PE=1 SV=2
Length = 1047
Score = 75.5 bits (184), Expect = 8e-14, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
LG+ VL+ +GV+ Y+G T+FA G W GVELD P GKNDG V GTRYF+ PK G+F
Sbjct: 222 LGDRVLVGG-TKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLF 280
Query: 78 VRADKLIQ 85
K+I+
Sbjct: 281 APIHKVIR 288
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/55 (56%), Positives = 35/55 (63%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQ 85
GV+ Y+G T+FA G W GV LD P GKNDG V G RYFE GIF R KL +
Sbjct: 94 GVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTR 148
>sp|Q9UDT6|CLIP2_HUMAN CAP-Gly domain-containing linker protein 2 OS=Homo sapiens GN=CLIP2
PE=1 SV=1
Length = 1046
Score = 75.5 bits (184), Expect = 8e-14, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
LG+ VL+ +GV+ Y+G T+FA G W GVELD P GKNDG V GTRYF+ PK G+F
Sbjct: 221 LGDRVLVGG-TKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLF 279
Query: 78 VRADKLIQ 85
K+I+
Sbjct: 280 APIHKVIR 287
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/55 (56%), Positives = 35/55 (63%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQ 85
GV+ Y+G T+FA G W GV LD P GKNDG V G RYFE GIF R KL +
Sbjct: 93 GVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTR 147
>sp|O42184|CLIP1_CHICK CAP-Gly domain-containing linker protein 1 OS=Gallus gallus
GN=CLIP1 PE=2 SV=1
Length = 1433
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G+ VL+ +GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +P++G+F
Sbjct: 217 IGDRVLVGG-TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPRYGLF 275
Query: 78 VRADKLIQ 85
K+ +
Sbjct: 276 APVHKVTK 283
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+GE V + N G I ++G T+FA G W G+ LD P GKNDG+V G RYF+ P GIF
Sbjct: 61 VGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLRGIF 119
Query: 78 VRADKL 83
R KL
Sbjct: 120 TRPSKL 125
>sp|Q6PCJ1|DCTN1_XENLA Dynactin subunit 1 OS=Xenopus laevis GN=dctn1 PE=2 SV=1
Length = 1232
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 32/53 (60%), Positives = 36/53 (67%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 83
G +AY+G T FA G WVGV LD GKNDGTVQG RYF HGIFVR ++
Sbjct: 25 GTVAYVGATLFATGKWVGVILDDSKGKNDGTVQGRRYFTCEENHGIFVRQSQI 77
>sp|Q8N3C7|CLIP4_HUMAN CAP-Gly domain-containing linker protein 4 OS=Homo sapiens GN=CLIP4
PE=1 SV=1
Length = 705
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 19 GESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFV 78
G VL+ N G + Y+GPT+FA+G W+G+EL + GKNDG+V RYF +P HG+ V
Sbjct: 626 GSQVLLTSSNEMGTVRYVGPTDFASGIWLGLELRSAKGKNDGSVGDKRYFTCKPNHGVLV 685
Query: 79 RADKL 83
R ++
Sbjct: 686 RPSRV 690
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
LG+ V+I G + + G TEFA+G W G+ELD P GKN+G+V +YF+ PK+GIF
Sbjct: 285 LGDRVVIAG-QKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGKVQYFKCAPKYGIF 343
Query: 78 VRADKLIQDRRGR 90
K I +GR
Sbjct: 344 APLSK-ISKAKGR 355
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
LGE VL+ G I + G T FA G W G+EL+ P GKNDG+V G +YF P++GIF
Sbjct: 487 LGERVLVVG-QRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIF 545
>sp|Q5U243|CLIP3_XENLA CAP-Gly domain-containing linker protein 3 OS=Xenopus laevis
GN=clip3 PE=2 SV=1
Length = 534
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
LG+ +L+ +G + + G TEFA+G WVGVELD P GKNDG+V G RYF PK GIF
Sbjct: 286 LGDRILLDA-EKAGTLRFCGTTEFASGQWVGVELDEPDGKNDGSVGGIRYFICPPKQGIF 344
Query: 78 VRADKL 83
K+
Sbjct: 345 APVSKI 350
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G+ VL+ G++ + G T+FA G W G+EL+ PTGK+DG+V G RYF K+G+F
Sbjct: 405 IGDQVLVAG-QKQGIVRFYGKTDFAPGYWFGIELEKPTGKHDGSVFGVRYFTCSAKNGVF 463
>sp|Q96DZ5|CLIP3_HUMAN CAP-Gly domain-containing linker protein 3 OS=Homo sapiens GN=CLIP3
PE=1 SV=3
Length = 547
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
LG+ VL+ +G + + G TEFA+G WVGVELD P GKNDG+V G RYF PK G+F
Sbjct: 296 LGDRVLLD-GQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLF 354
Query: 78 VRADKL 83
K+
Sbjct: 355 ASVSKI 360
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G+ VL+ G++ + G T+FA G W G+ELD PTGK+DG+V G RYF P+HG+F
Sbjct: 418 VGDQVLVA-GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCPPRHGVF 476
Query: 78 VRADKL 83
A ++
Sbjct: 477 APASRI 482
>sp|Q5R686|CLIP3_PONAB CAP-Gly domain-containing linker protein 3 OS=Pongo abelii GN=CLIP3
PE=2 SV=1
Length = 547
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
LG+ VL+ +G + + G TEFA+G WVGVELD P GKNDG+V G RYF PK G+F
Sbjct: 296 LGDRVLLD-GQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLF 354
Query: 78 VRADKL 83
K+
Sbjct: 355 ASVSKI 360
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G+ VL+ G++ + G T+FA G W G+ELD PTGK+DG+V G RYF P+HG+F
Sbjct: 418 VGDQVLVA-GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCPPRHGVF 476
Query: 78 VRADKL 83
A ++
Sbjct: 477 APASRI 482
>sp|B9EHT4|CLIP3_MOUSE CAP-Gly domain-containing linker protein 3 OS=Mus musculus GN=Clip3
PE=1 SV=1
Length = 547
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
LG+ VL+ +G + + G TEFA+G WVGVELD P GKNDG+V G RYF PK G+F
Sbjct: 296 LGDRVLLD-GQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLF 354
Query: 78 VRADKL 83
K+
Sbjct: 355 ASVSKV 360
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G+ VL+ G++ + G T+FA G W G+ELD PTGK+DG+V G RYF P+HG+F
Sbjct: 418 VGDQVLVA-GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVF 476
Query: 78 VRADKL 83
A ++
Sbjct: 477 APASRI 482
>sp|P28023|DCTN1_RAT Dynactin subunit 1 OS=Rattus norvegicus GN=Dctn1 PE=2 SV=2
Length = 1280
Score = 69.7 bits (169), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 83
G +AY+G T FA G WVGV LD GKNDGTVQG +YF HGIFVR ++
Sbjct: 42 GTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQI 94
>sp|Q14203|DCTN1_HUMAN Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 SV=3
Length = 1278
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 83
G +AY+G T FA G WVGV LD GKNDGTVQG +YF HGIFVR ++
Sbjct: 42 GTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQI 94
>sp|Q01397|DYNA_NEUCR Dynactin, 150 kDa isoform OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ro-3 PE=3 SV=3
Length = 1367
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/50 (58%), Positives = 37/50 (74%)
Query: 30 SGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVR 79
+ + Y+G T FA GTWVG+ELD P+GKNDG+VQG RYF +G+FVR
Sbjct: 21 TAFVRYVGETAFAPGTWVGIELDEPSGKNDGSVQGERYFNCEMGYGMFVR 70
>sp|Q54Z01|TBCB_DICDI Tubulin-specific chaperone B OS=Dictyostelium discoideum GN=tbcb
PE=3 SV=1
Length = 270
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLI 84
G + Y+G EF++G W+GVELD P GKNDG+V+G +YF+ PK+G F + ++
Sbjct: 208 GKVQYVGTVEFSSGVWIGVELDLPLGKNDGSVKGKQYFQCSPKYGCFAKPKNVL 261
>sp|O08788|DCTN1_MOUSE Dynactin subunit 1 OS=Mus musculus GN=Dctn1 PE=1 SV=3
Length = 1281
Score = 69.3 bits (168), Expect = 7e-12, Method: Composition-based stats.
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 83
G +AY+G T FA G WVGV LD GKNDGTVQG +YF HGIFVR ++
Sbjct: 42 GTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQI 94
>sp|Q20728|TBCB_CAEEL Tubulin-specific chaperone B OS=Caenorhabditis elegans GN=F53F4.3
PE=1 SV=1
Length = 229
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 36/49 (73%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVR 79
G +AY+G T+F G WVGV+ D P GKNDG+V G RYF+ PK+G FVR
Sbjct: 164 GEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVR 212
>sp|Q8CI96|CLIP4_MOUSE CAP-Gly domain-containing linker protein 4 OS=Mus musculus GN=Clip4
PE=1 SV=1
Length = 704
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 19 GESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFV 78
G VL+ N + Y+GPT+FA+G W+G+EL + GKNDG V RYF +P +G+ V
Sbjct: 625 GSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLV 684
Query: 79 RADKL 83
R ++
Sbjct: 685 RPSRV 689
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
LG+ V+I G + + G TEFA+G W G+ELD P GKN+G+V +YF+ PK+GIF
Sbjct: 285 LGDRVVIA-GQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIF 343
Query: 78 VRADKLIQDRRGR 90
K+ + + GR
Sbjct: 344 APLSKISKLKDGR 356
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
LGE VL+ G I + G T FA G W G+EL+ P GKNDG+V G +YF P++GIF
Sbjct: 486 LGERVLVV-GQRVGTIKFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIF 544
>sp|P35458|DCTN1_CHICK Dynactin subunit 1 OS=Gallus gallus GN=DCTN1 PE=2 SV=2
Length = 1224
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/53 (56%), Positives = 35/53 (66%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 83
G +AY+G T A G WVGV LD GKNDGTVQG +YF HGIFVR ++
Sbjct: 43 GTVAYVGATLXATGKWVGVILDEAKGKNDGTVQGRKYFTCEENHGIFVRQSQI 95
>sp|Q66HD5|CLIP4_RAT CAP-Gly domain-containing linker protein 4 OS=Rattus norvegicus
GN=Clip4 PE=2 SV=1
Length = 599
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
LG+ V+I G + + G TEFA+G W G+ELD P GKN+G+V +YF+ PK+GIF
Sbjct: 285 LGDRVVIAG-QKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIF 343
Query: 78 VRADKLIQDRRGR 90
K+ + + GR
Sbjct: 344 APLSKITKVKDGR 356
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
LGE VL+ G I + G T FA G W G+EL+ P GKNDG+V G +YF P++GIF
Sbjct: 487 LGERVLVVG-QRVGTIKFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIF 545
>sp|O42667|SSM4_SCHPO Microtubule-associated protein ssm4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssm4 PE=1 SV=1
Length = 670
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 15 WVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKH 74
++ +G+ VLIR G++ + G T+F +G W+GVEL GKNDG+V+G RYF
Sbjct: 3 YLSVGDEVLIR--GELGIVRFAGSTDFESGIWLGVELLNGKGKNDGSVKGKRYFSCEKGK 60
Query: 75 GIFVRA 80
GIFVRA
Sbjct: 61 GIFVRA 66
>sp|P13496|DCTN1_DROME Dynactin subunit 1 OS=Drosophila melanogaster GN=Gl PE=1 SV=2
Length = 1265
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 36/53 (67%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 83
G +AY+G T FA G WVGV LD P GKN G+++G +YF+ G+FVR +L
Sbjct: 21 GTVAYVGMTSFAVGKWVGVVLDEPKGKNSGSIKGQQYFQCDENCGMFVRPTQL 73
>sp|Q9D1E6|TBCB_MOUSE Tubulin-folding cofactor B OS=Mus musculus GN=Tbcb PE=1 SV=2
Length = 244
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVR 79
G + Y+G T+F G WVGV D P GKNDG+V G RYFE + K+G FV+
Sbjct: 177 GTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVK 225
>sp|Q99426|TBCB_HUMAN Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2
Length = 244
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVR 79
G + Y+G T+F G W+GV D P GKNDG+V G RYFE + K+G FV+
Sbjct: 177 GTVMYVGLTDFKPGYWIGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVK 225
>sp|Q5E951|TBCB_BOVIN Tubulin-folding cofactor B OS=Bos taurus GN=TBCB PE=2 SV=1
Length = 244
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVR 79
G + Y+G T+F G W+G+ D P GKNDG+V G RYFE + K+G FV+
Sbjct: 177 GTVMYVGLTDFKPGYWIGIRYDEPLGKNDGSVNGKRYFECQAKYGAFVK 225
>sp|Q5VT06|CE350_HUMAN Centrosome-associated protein 350 OS=Homo sapiens GN=CEP350 PE=1 SV=1
Length = 3117
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G+ VLI G++ + G T FA G W GVELD P G N+GT G YFE + KHGIF
Sbjct: 2499 IGDRVLIGNVQP-GILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIF 2557
Query: 78 VRADKL 83
K+
Sbjct: 2558 APPQKI 2563
>sp|P33420|NIP80_YEAST Protein NIP100 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NIP100 PE=1 SV=2
Length = 868
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 10/76 (13%)
Query: 16 VCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPK-- 73
+ L ++VL+ G + +IG T+FA G W G+ELD P GKNDG+ G RYF+ K
Sbjct: 15 ISLQDTVLVN--EMKGRVKFIGETQFAKGIWYGIELDKPLGKNDGSANGIRYFDIDLKKA 72
Query: 74 ------HGIFVRADKL 83
+G+F + D L
Sbjct: 73 NSNGGYYGLFCKKDTL 88
>sp|Q10235|ALP11_SCHPO Cell polarity protein alp11 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=alp11 PE=1 SV=1
Length = 234
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 31 GVIAYIG--PTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 83
G I YIG P WVGVE D P GKNDGTV G RYF ++ KHG F+R+ ++
Sbjct: 166 GTIRYIGLVPEINNDNLWVGVEFDEPVGKNDGTVSGKRYFNAKNKHGSFLRSSEV 220
>sp|Q5U378|TBCE_DANRE Tubulin-specific chaperone E OS=Danio rerio GN=tbce PE=2 SV=2
Length = 521
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPT-GKNDGTVQGTRYFESR-PKHGIFVRADK 82
G + Y+GP AG W+GVE D P GK+DG+ G RYF R P G FVR K
Sbjct: 18 GTVRYVGPVPPTAGVWLGVEWDHPERGKHDGSHDGVRYFTCRHPTGGSFVRPQK 71
>sp|P34531|YM92_CAEEL Uncharacterized protein M01A8.2 OS=Caenorhabditis elegans
GN=M01A8.2 PE=4 SV=4
Length = 937
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
G + Y+GP G + G+EL P GK+DGT QG YF + P HGIF
Sbjct: 33 GFLRYVGPIHGKDGMFCGIELLEPNGKHDGTFQGVSYFIATPYHGIF 79
>sp|P11709|BIK1_YEAST Nuclear fusion protein BIK1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BIK1 PE=1 SV=1
Length = 440
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 26 PYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESR-PKHGIFVRADKL 83
P G + Y+GP + AG + GV+L A GKNDG+ G +YF++ P+ G+F++ K+
Sbjct: 15 PNLGRGQLKYVGPVDTKAGMFAGVDLLANIGKNDGSFMGKKYFQTEYPQSGLFIQLQKV 73
>sp|Q8CIV8|TBCE_MOUSE Tubulin-specific chaperone E OS=Mus musculus GN=Tbce PE=1 SV=1
Length = 524
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPT-GKNDGTVQGTRYFESR-PKHGIFVRADKL 83
+ + G AG W+GVE D P GK+DG+ +GT YF+ R P G FVR K+
Sbjct: 21 ATVRFCGAVPPVAGLWLGVEWDNPERGKHDGSHEGTMYFKCRHPTGGSFVRPSKV 75
>sp|Q5RBD9|TBCE_PONAB Tubulin-specific chaperone E OS=Pongo abelii GN=TBCE PE=2 SV=1
Length = 527
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPT-GKNDGTVQGTRYFESR-PKHGIFVRADKL 83
+ + G AG W+GVE D P GK+DG+ +GT YF+ R P G F+R +K+
Sbjct: 21 ATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFQCRHPTGGSFIRPNKV 75
>sp|Q15813|TBCE_HUMAN Tubulin-specific chaperone E OS=Homo sapiens GN=TBCE PE=1 SV=1
Length = 527
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPT-GKNDGTVQGTRYFESR-PKHGIFVRADKL 83
+ + G AG W+GVE D P GK+DG+ +GT YF+ R P G F+R +K+
Sbjct: 21 ATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGSFIRPNKV 75
>sp|Q55CN0|TBCE_DICDI Tubulin-specific chaperone E OS=Dictyostelium discoideum GN=tbce
PE=3 SV=1
Length = 525
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 29 SSGVIAYIGPTEFAAGTWVGVELDAPT-GKNDGTVQGTRYFESRPK-HGIFVRADKLIQ 85
S G I Y G + G W G+E D P GK+ GTV+G +YF+ K G F++ +KLI+
Sbjct: 25 SVGTIRYQGKVDGFEGNWYGIEWDDPKRGKHQGTVKGKQYFKCINKGSGSFMKYEKLIK 83
>sp|Q5FVQ9|TBCE_RAT Tubulin-specific chaperone E OS=Rattus norvegicus GN=Tbce PE=2
SV=1
Length = 524
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPT-GKNDGTVQGTRYFESR-PKHGIFVRAD 81
+ + G AG W+GVE D P GK+DG+ +GT YF+ R P G FVR +
Sbjct: 21 ATVRFCGAVPPVAGLWLGVEWDNPERGKHDGSHEGTMYFKCRHPTGGSFVRPN 73
>sp|Q32KS0|TBCE_BOVIN Tubulin-specific chaperone E OS=Bos taurus GN=TBCE PE=2 SV=1
Length = 528
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 43 AGTWVGVELDAPT-GKNDGTVQGTRYFESR-PKHGIFVRADKL 83
AG W+GVE D P GK+DG+ +GT YF+ R P G F+R K+
Sbjct: 33 AGLWLGVEWDNPERGKHDGSHEGTVYFKCRHPTAGSFIRPHKV 75
>sp|Q5U508|TBCE_XENLA Tubulin-specific chaperone E OS=Xenopus laevis GN=tbce PE=2 SV=1
Length = 522
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 16 VCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAP-TGKNDGTVQGTRYFE-SRPK 73
+C GE +R Y+G G W+GVE D GK++GT +GT+YF S P
Sbjct: 15 ICDGEYATVR---------YVGNVPPTPGLWLGVEWDNHLRGKHNGTHEGTKYFTCSHPT 65
Query: 74 HGIFVRADK 82
G F+R K
Sbjct: 66 GGSFIRLKK 74
>sp|P53904|TBCB_YEAST Tubulin-specific chaperone B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ALF1 PE=1 SV=1
Length = 254
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 30 SGVIAYIGPTEF-AAGTWVGVELDAPTGKNDGTVQGTRYF-ESRPKHGIFVR 79
++ Y+GP GTW GVE GKNDG + G F P HG FVR
Sbjct: 174 EAILRYVGPLPLDVMGTWCGVEFPEAAGKNDGRINGVTLFGPVAPGHGSFVR 225
>sp|P79065|TIP1_SCHPO Tip elongation protein 1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=tip1 PE=1 SV=1
Length = 461
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 31 GVIAYIGPTEFAAGTWVGVEL---DAPTGKNDGTVQGTRYFESR--PKHGIFVRADK 82
G + Y G E G +VG+EL A GKN G V G YF+++ K GIFV DK
Sbjct: 16 GFVRYAGEVENRKGVYVGLELLPEFAEFGKNRGVVDGREYFKTKNNEKTGIFVPFDK 72
>sp|Q80TQ2|CYLD_MOUSE Ubiquitin carboxyl-terminal hydrolase CYLD OS=Mus musculus GN=Cyld
PE=1 SV=2
Length = 952
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 31 GVIAYIGPTEFAAGTWVGVEL-DAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRR 88
GVI +IG + G+EL D G DGT +GTRYF K +FV+ D R
Sbjct: 482 GVIRWIGQPPGLSDVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSR 540
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 31 GVIAYIGP---TEFAAGTWVGVEL---DAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 83
GV+ + GP +G + GVEL G DG QG + F+ G+FV DKL
Sbjct: 144 GVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDKL 202
>sp|Q66H62|CYLD_RAT Ubiquitin carboxyl-terminal hydrolase CYLD OS=Rattus norvegicus
GN=Cyld PE=2 SV=1
Length = 953
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 31 GVIAYIGPTEFAAGTWVGVEL-DAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRR 88
GVI +IG + G+EL D G DGT +GTRYF K +FV+ D R
Sbjct: 483 GVIRWIGQPPGLSDVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSR 541
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 31 GVIAYIGP---TEFAAGTWVGVEL---DAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 83
GV+ + GP +G + GVEL G DG QG + F+ G+FV DKL
Sbjct: 144 GVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDKL 202
>sp|Q1RMU2|CYLD_BOVIN Ubiquitin carboxyl-terminal hydrolase CYLD OS=Bos taurus GN=CYLD
PE=2 SV=1
Length = 953
Score = 37.0 bits (84), Expect = 0.039, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 31 GVIAYIGPTEFAAGTWVGVEL-DAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRR 88
GVI +IG G+EL D G DGT +GTRYF K +FV+ D R
Sbjct: 483 GVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSR 541
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 31 GVIAYIGP---TEFAAGTWVGVEL---DAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 83
GV+ + GP +G + GVEL G DG QG + F+ G+FV DKL
Sbjct: 144 GVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDKL 202
>sp|Q9NQC7|CYLD_HUMAN Ubiquitin carboxyl-terminal hydrolase CYLD OS=Homo sapiens GN=CYLD
PE=1 SV=1
Length = 956
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 31 GVIAYIGPTEFAAGTWVGVEL-DAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRR 88
GVI +IG G+EL D G DGT +GTRYF K +FV+ D R
Sbjct: 486 GVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSR 544
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 31 GVIAYIGP---TEFAAGTWVGVEL---DAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 83
GV+ + GP +G + GVEL G DG QG + F+ G+FV DKL
Sbjct: 144 GVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDKL 202
>sp|Q5RED8|CYLD_PONAB Ubiquitin carboxyl-terminal hydrolase CYLD OS=Pongo abelii GN=CYLD
PE=2 SV=1
Length = 956
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 31 GVIAYIGPTEFAAGTWVGVEL-DAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRR 88
GVI +IG G+EL D G DGT +GTRYF K +FV+ D R
Sbjct: 486 GVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSR 544
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 31 GVIAYIGP---TEFAAGTWVGVEL---DAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 83
GV+ + GP +G + GVEL G DG QG + F+ G+FV DKL
Sbjct: 144 GVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDKL 202
>sp|Q9YAB6|CSD_AERPE Probable cysteine desulfurase OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=csd
PE=3 SV=1
Length = 411
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 21/73 (28%)
Query: 23 LIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADK 82
L+ P S G+I Y+GP D P G+ G V T + +S + G
Sbjct: 314 LLEPLYSEGLIRYVGP-------------DKP-GERHGIVSITTHLKSPDELG------- 352
Query: 83 LIQDRRGRAMRSG 95
L+ DRRG A+R+G
Sbjct: 353 LLLDRRGIAVRTG 365
>sp|Q2PT31|MYOC_CANFA Myocilin OS=Canis familiaris GN=MYOC PE=1 SV=2
Length = 483
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Query: 22 VLIRPYNSSGVIAYIGPTEFA---AGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
VL RP S+G + Y G F +GT V EL A T K + + G Y HG F
Sbjct: 296 VLPRPLESTGAVVYRGSLYFQGAGSGTVVRYELTAETVKAEREIPGAGY------HGQF 348
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,343,515
Number of Sequences: 539616
Number of extensions: 1731985
Number of successful extensions: 3073
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2997
Number of HSP's gapped (non-prelim): 79
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)