Query psy6084
Match_columns 106
No_of_seqs 131 out of 927
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 17:13:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ixd_A Cylindromatosis tumour- 100.0 1.8E-31 6.2E-36 182.5 11.1 87 9-95 11-99 (104)
2 1whk_A 1700024K14RIK, riken cD 100.0 1.9E-31 6.5E-36 178.6 8.7 81 7-87 4-84 (91)
3 1txq_A Dynactin 1; protein com 100.0 2.1E-31 7.3E-36 178.9 8.9 80 12-91 9-88 (93)
4 4b6m_A Tubulin-specific chaper 100.0 2.5E-31 8.7E-36 175.8 8.6 73 14-86 4-77 (84)
5 2cow_A Kinesin-like protein KI 100.0 5.1E-31 1.7E-35 179.2 10.0 80 9-89 17-96 (100)
6 2cp2_A CLIP-115, KIAA0291; mic 100.0 4.8E-31 1.6E-35 177.9 9.5 80 7-87 10-89 (95)
7 2e3i_A Restin; CAP-Gly, cytopl 100.0 5.1E-31 1.7E-35 174.9 9.0 81 14-95 1-81 (86)
8 1whh_A Clipr-59; microtubule b 100.0 9E-31 3.1E-35 178.5 9.9 79 12-91 22-100 (102)
9 3rdv_A CAP-Gly domain-containi 100.0 6E-31 2E-35 169.5 8.2 71 14-85 1-71 (72)
10 1whl_A Cylindromatosis tumor s 100.0 1.4E-30 4.7E-35 175.3 9.5 79 12-90 4-92 (95)
11 2cp3_A CLIP-115, KIAA0291; mic 100.0 2.6E-30 8.8E-35 170.9 10.0 75 12-87 4-78 (84)
12 2z0w_A CAP-Gly domain-containi 100.0 5.7E-31 2E-35 177.8 6.8 80 11-91 6-85 (96)
13 2coy_A Dynactin-1; microtubule 100.0 4.5E-30 1.5E-34 177.6 10.2 75 12-86 30-104 (112)
14 2cp0_A Clipr-59 protein, clipr 100.0 2E-30 7E-35 174.8 8.0 77 13-90 14-90 (95)
15 1lpl_A Hypothetical 25.4 kDa p 100.0 2.4E-30 8.1E-35 174.4 7.7 76 11-86 7-85 (95)
16 1whj_A 1700024K14RIK, riken cD 100.0 7.9E-30 2.7E-34 173.9 10.3 78 13-91 22-99 (102)
17 2e3h_A Restin; CAP-Gly, cytopl 100.0 9.8E-30 3.3E-34 170.0 9.5 71 15-86 1-71 (90)
18 2coz_A CAP350, centrosome-asso 100.0 4.3E-29 1.5E-33 174.9 10.7 77 10-87 26-102 (122)
19 2cp5_A Restin; microtubule bin 100.0 5.4E-29 1.9E-33 177.9 10.9 77 10-87 59-135 (141)
20 1whg_A Tubulin specific chaper 100.0 1.9E-29 6.6E-34 174.6 8.1 75 12-86 29-106 (113)
21 2cp6_A Restin; microtubule bin 100.0 3.1E-28 1.1E-32 178.7 12.1 73 12-85 35-107 (172)
22 1whm_A Cylindromatosis tumor s 100.0 7.8E-28 2.7E-32 161.3 10.4 77 11-87 5-86 (92)
23 2zzd_A Thiocyanate hydrolase s 72.0 1.5 5.3E-05 30.2 1.5 24 2-25 22-46 (126)
24 3qyh_B CO-type nitrIle hydrata 68.2 2.4 8.3E-05 31.5 2.0 52 3-54 118-193 (219)
25 3pie_A 5'->3' exoribonuclease 65.3 11 0.00038 34.3 5.9 69 14-90 1064-1139(1155)
26 3hht_B NitrIle hydratase beta 64.2 2.4 8.2E-05 31.8 1.3 23 3-25 129-151 (229)
27 1ugp_B NitrIle hydratase beta 63.6 2.7 9.4E-05 31.4 1.5 24 3-26 126-149 (226)
28 2e6z_A Transcription elongatio 60.0 11 0.00038 22.0 3.5 24 11-34 3-29 (59)
29 2do3_A Transcription elongatio 52.8 20 0.00068 22.1 3.9 28 6-33 8-38 (69)
30 3udc_A Small-conductance mecha 42.8 18 0.0006 26.9 3.0 24 14-39 127-150 (285)
31 1at0_A 17-hedgehog; developmen 42.2 73 0.0025 21.2 5.9 57 14-81 19-79 (145)
32 3lnn_A Membrane fusion protein 39.3 1.1E+02 0.0039 22.5 7.1 74 12-86 218-298 (359)
33 2vv5_A MSCS, small-conductance 38.7 20 0.00068 26.7 2.7 25 13-39 127-151 (286)
34 2y35_A LD22664P; hydrolase-DNA 37.8 42 0.0014 30.4 5.0 64 13-83 1056-1136(1140)
35 3a8g_B NitrIle hydratase subun 36.3 11 0.00039 27.7 1.0 28 11-38 118-160 (212)
36 1nz9_A Transcription antitermi 36.3 55 0.0019 18.4 3.9 23 14-36 3-28 (58)
37 2kss_A Carotenogenesis protein 34.2 4.4 0.00015 26.5 -1.4 39 13-55 35-75 (106)
38 2ivw_A PILP pilot protein; lip 34.0 97 0.0033 20.5 5.3 59 32-90 26-100 (113)
39 2ro0_A Histone acetyltransfera 33.3 41 0.0014 21.5 3.2 25 1-25 4-33 (92)
40 4fm4_B NitrIle hydratase beta 29.9 20 0.00069 26.2 1.4 41 14-54 117-181 (206)
41 4av2_M PILP protein, type IV p 26.7 1.1E+02 0.0036 21.7 4.8 63 31-93 93-171 (181)
42 2oqk_A Putative translation in 26.2 61 0.0021 21.3 3.2 25 14-38 69-96 (117)
43 1hr0_W Translation initiation 25.7 29 0.00099 20.7 1.4 13 14-26 45-57 (71)
44 3fpp_A Macrolide-specific effl 25.5 94 0.0032 22.7 4.5 74 12-85 203-286 (341)
45 3mlq_E Transcription-repair co 21.5 1E+02 0.0035 18.4 3.3 57 15-91 2-60 (71)
46 2rnz_A Histone acetyltransfera 20.3 72 0.0024 20.5 2.5 24 2-25 12-35 (94)
47 1p3h_A 10 kDa chaperonin; beta 20.2 52 0.0018 21.3 1.9 16 10-25 56-71 (99)
48 4dka_C RNA-editing complex pro 20.2 78 0.0027 21.0 2.7 27 9-40 54-80 (105)
No 1
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.97 E-value=1.8e-31 Score=182.47 Aligned_cols=87 Identities=28% Similarity=0.381 Sum_probs=78.3
Q ss_pred CCCCCCcccccCeEEEeCC-CceEEEEEEeecCCCCCeEEEEEE-cCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084 9 DVTLPEWVCLGESVLIRPY-NSSGVIAYIGPTEFAAGTWVGVEL-DAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD 86 (106)
Q Consensus 9 ~~~~~~~l~vG~rV~v~~~-~~~GtVRyiG~~~~~~g~~vGVEl-de~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~ 86 (106)
+...+..|+|||||+|... ..+|||||+|++++..|.|+|||| |++.|||||+++|+|||+|+|+||+||++++|..+
T Consensus 11 ~~~~~~~l~VG~RV~V~~~~~~~GtVryvG~v~~~~G~wvGVEldDep~GKnDGsv~G~rYF~C~p~~G~FVr~~~v~~~ 90 (104)
T 1ixd_A 11 PPGNSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPD 90 (104)
T ss_dssp TTTSSSCCCTTSEEEECSSSCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECSCCCTTCBEEEEGGGEEEC
T ss_pred CCCCCcccccCCEEEECcCCCcEEEEEEecccCCCCceEEEEEecCCCCCCCCCEECCEEeeecCCCcEEEEcHHHceec
Confidence 3344567999999999732 588999999999999999999999 88999999999999999999999999999999999
Q ss_pred CCCccccCC
Q psy6084 87 RRGRAMRSG 95 (106)
Q Consensus 87 ~~~~~~~~~ 95 (106)
+++.++...
T Consensus 91 ~rf~~~~~~ 99 (104)
T 1ixd_A 91 SRFASLQPS 99 (104)
T ss_dssp CTTCCCCSS
T ss_pred cccccCCCC
Confidence 999987543
No 2
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.97 E-value=1.9e-31 Score=178.60 Aligned_cols=81 Identities=35% Similarity=0.657 Sum_probs=74.5
Q ss_pred CCCCCCCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084 7 FDDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD 86 (106)
Q Consensus 7 ~~~~~~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~ 86 (106)
.++.+.++.|+|||||+|......|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|.+.
T Consensus 4 ~s~~~~~~~~~vG~rV~V~~~~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~~~~G~Fvr~~~v~~~ 83 (91)
T 1whk_A 4 GSSGEGTVKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVTYR 83 (91)
T ss_dssp SSSSCCCCCCCSSCEEEESSSCCEEEECCCEECSSSSSEEEEEECSSSCSSCCSEETTEECCCCSTTCCCEECGGGEECC
T ss_pred CCCCCCCccccCCCEEEECCCCeEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEEeecCCCeEEEEchHHcEEc
Confidence 45667788899999999975478999999999999999999999999999999999999999999999999999999864
Q ss_pred C
Q psy6084 87 R 87 (106)
Q Consensus 87 ~ 87 (106)
.
T Consensus 84 ~ 84 (91)
T 1whk_A 84 G 84 (91)
T ss_dssp C
T ss_pred C
Confidence 3
No 3
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=99.97 E-value=2.1e-31 Score=178.89 Aligned_cols=80 Identities=43% Similarity=0.705 Sum_probs=69.5
Q ss_pred CCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccCCCcc
Q psy6084 12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGRA 91 (106)
Q Consensus 12 ~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~~~~~ 91 (106)
.+..|+|||||.|...+..|||||+|++++..|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|..-....+
T Consensus 9 ~~~~~~vG~rv~v~~~~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~~~~G~Fvr~~~v~~~~~~~~ 88 (93)
T 1txq_A 9 SARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFEDGAD 88 (93)
T ss_dssp --CCCCTTCEEEETTTCCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCCTTCEEEECGGGEEECC----
T ss_pred ccccCCCCCEEEECCCCeEEEEEEeeecCCCCCcEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHeEEccCCCC
Confidence 34578999999997556899999999999999999999999999999999999999999999999999999997544433
No 4
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=99.97 E-value=2.5e-31 Score=175.79 Aligned_cols=73 Identities=41% Similarity=0.803 Sum_probs=67.2
Q ss_pred CcccccCeEEEeCCCceEEEEEEeecC-CCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084 14 EWVCLGESVLIRPYNSSGVIAYIGPTE-FAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD 86 (106)
Q Consensus 14 ~~l~vG~rV~v~~~~~~GtVRyiG~~~-~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~ 86 (106)
++|+|||||+|.+.+.+|||||+|+++ +..|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|...
T Consensus 4 ~~i~vG~Rv~v~~~~~~G~VryvG~v~~~~~G~wvGVelDep~GkndGsv~G~rYF~C~~~~G~Fvr~~~v~~g 77 (84)
T 4b6m_A 4 ETIHVGDRCLCRPGDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQPNYGGFLRPDQVEVG 77 (84)
T ss_dssp -CCCTTCEEEETTTTEEEEEEEEEECTTSCSSEEEEEEESSSCCSBSSEETTEESSCCCTTSEEEECGGGEEEC
T ss_pred cCcccCCEEEEcCCCeEEEEEEEecCCCCCCCEEEEEEECCCCCCcCCEECCEEEEecCCCeEEEecHHHeEEC
Confidence 468999999997667899999999985 5789999999999999999999999999999999999999999864
No 5
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.97 E-value=5.1e-31 Score=179.22 Aligned_cols=80 Identities=44% Similarity=0.932 Sum_probs=73.8
Q ss_pred CCCCCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccCC
Q psy6084 9 DVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRR 88 (106)
Q Consensus 9 ~~~~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~~ 88 (106)
..+++.+|+|||||.|. ....|||||+|++++..|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|.+...
T Consensus 17 ~~~~~~~l~vG~rV~V~-g~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~~ 95 (100)
T 2cow_A 17 ADEVPEWLREGEFVTVG-AHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRATS 95 (100)
T ss_dssp CCCCCSSCCTTCEEECS-SSCEEEEEEEECCSSSSSCEEEEECSSSCCSCSSEETTEECCCSCTTCCEEECGGGCEECCC
T ss_pred cccCCccccCCCEEEEC-CCcEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEecHHHeeECCC
Confidence 55778889999999996 36899999999999999999999999999999999999999999999999999999997654
Q ss_pred C
Q psy6084 89 G 89 (106)
Q Consensus 89 ~ 89 (106)
.
T Consensus 96 ~ 96 (100)
T 2cow_A 96 G 96 (100)
T ss_dssp C
T ss_pred C
Confidence 3
No 6
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Probab=99.97 E-value=4.8e-31 Score=177.89 Aligned_cols=80 Identities=43% Similarity=0.728 Sum_probs=72.2
Q ss_pred CCCCCCCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084 7 FDDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD 86 (106)
Q Consensus 7 ~~~~~~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~ 86 (106)
....+.++.|+||+||.|.. ...|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|...
T Consensus 10 ~~~~~~~~~~~vG~rV~V~g-~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~kv~~~ 88 (95)
T 2cp2_A 10 EVGDDFLGDFVVGERVWVNG-VKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQ 88 (95)
T ss_dssp CCCBSSCCSCCTTCEEEGGG-SCEEEEEEEEECSSSCSEEEEEEESSSCSSBBSEETTEECCCCCTTTEEEECGGGCCSS
T ss_pred hhhhhhhhcCcCCCEEEECC-ceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEecccCCCeEEEEcHHHCccC
Confidence 33445667799999999973 57999999999999999999999999999999999999999999999999999999864
Q ss_pred C
Q psy6084 87 R 87 (106)
Q Consensus 87 ~ 87 (106)
.
T Consensus 89 p 89 (95)
T 2cp2_A 89 P 89 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 7
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Probab=99.97 E-value=5.1e-31 Score=174.89 Aligned_cols=81 Identities=42% Similarity=0.821 Sum_probs=70.8
Q ss_pred CcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccCCCcccc
Q psy6084 14 EWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGRAMR 93 (106)
Q Consensus 14 ~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~~~~~~~ 93 (106)
+.|+||+||.|.. ...|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|....++....
T Consensus 1 d~~~vG~rv~v~g-~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~c~~~~G~Fvr~~~v~~~~~~~~~~ 79 (86)
T 2e3i_A 1 DDFRVGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEA 79 (86)
T ss_dssp CCCCTTCEEEETT-TEEEEEEEEEECSSSSSEEEEEEESSSCSSBSSEETTEESSCCSTTCEEEECGGGEESSCCC----
T ss_pred CCccCCCEEEECC-CcEEEEEEeeeCCCCCCcEEEEEeCCCCCccCCEECCEEeeecCCCeEEEEcHHHcccccchhhhc
Confidence 4689999999973 578999999999999999999999999999999999999999999999999999999888877554
Q ss_pred CC
Q psy6084 94 SG 95 (106)
Q Consensus 94 ~~ 95 (106)
+.
T Consensus 80 ~~ 81 (86)
T 2e3i_A 80 NG 81 (86)
T ss_dssp --
T ss_pred cC
Confidence 43
No 8
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.97 E-value=9e-31 Score=178.53 Aligned_cols=79 Identities=39% Similarity=0.798 Sum_probs=72.2
Q ss_pred CCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccCCCcc
Q psy6084 12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGRA 91 (106)
Q Consensus 12 ~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~~~~~ 91 (106)
.+..|+|||||.|.. ...|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|.....+.+
T Consensus 22 ~~~~~~VG~RV~V~g-~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~d~p~ 100 (102)
T 1whh_A 22 EGAKAEVGDQVLVAG-QKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQRIGSGPS 100 (102)
T ss_dssp SCCSSCTTSEEEETT-TEEEEEEEEEECSSSSSEEEEEECSSSCCSSSSEETTEECSCCCTTTEEEECGGGEEECCSCTT
T ss_pred ccccCcCCCEEEECC-CcEEEEEEeeecCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCcEEEecHHHeEECCCCCC
Confidence 457799999999963 5789999999999999999999999999999999999999999999999999999997665543
No 9
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=99.97 E-value=6e-31 Score=169.49 Aligned_cols=71 Identities=46% Similarity=0.910 Sum_probs=66.0
Q ss_pred CcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccc
Q psy6084 14 EWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQ 85 (106)
Q Consensus 14 ~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~ 85 (106)
+.|+||+||+|.. +..|||||+|++++.+|.|+|||||+|.|||||+++|++||+|+|+||+||++++|+.
T Consensus 1 d~~~vG~rv~v~g-~~~G~VryvG~~~~~~g~w~GVeld~p~GkndGsv~G~rYF~c~p~~G~Fv~~~kvsr 71 (72)
T 3rdv_A 1 DDFRVGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTR 71 (72)
T ss_dssp -CCCTTCEEEETT-TEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCSTTCEEEECGGGEEC
T ss_pred CCcccCCEEEECC-CCEEEEEEeeeCCCCCceEEEEEECCCCCccCCEECCEEeCccCCCCEEEecHHHccc
Confidence 3589999999973 5689999999999999999999999999999999999999999999999999999873
No 10
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.97 E-value=1.4e-30 Score=175.35 Aligned_cols=79 Identities=30% Similarity=0.445 Sum_probs=71.2
Q ss_pred CCCcccccCeEEEeC-C---CceEEEEEEeecC---CCCCeEEEEEEcCC---CCCCCcEECCEEeeEeCCCCeeEEecC
Q psy6084 12 LPEWVCLGESVLIRP-Y---NSSGVIAYIGPTE---FAAGTWVGVELDAP---TGKNDGTVQGTRYFESRPKHGIFVRAD 81 (106)
Q Consensus 12 ~~~~l~vG~rV~v~~-~---~~~GtVRyiG~~~---~~~g~~vGVElde~---~Gk~dGt~~G~rYF~c~p~~GiFv~~~ 81 (106)
.++.|+|||||+|.. . ..+|||||+|+++ +.+|.|+|||||+| .|||||+++|+|||+|+|+||+||+++
T Consensus 4 ~~~~~~VG~rV~V~~~~~~~~~~GtVryvG~v~~~~~~~G~wvGVElDep~~~~GKnDGsv~G~rYF~C~~~~G~Fv~~~ 83 (95)
T 1whl_A 4 GSSGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALD 83 (95)
T ss_dssp SCCCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECCCCCTTTEEEECGG
T ss_pred ccccCcCCCEEEEecCCCccceeEEEEEeCccCcccCCCceEEEEEeCCCcccCCCCCCEECCEEEeecCCCeEEEEcHH
Confidence 457799999999962 2 4789999999998 78999999999999 899999999999999999999999999
Q ss_pred CccccCCCc
Q psy6084 82 KLIQDRRGR 90 (106)
Q Consensus 82 kv~~~~~~~ 90 (106)
+|....+..
T Consensus 84 ~v~~~~~~p 92 (95)
T 1whl_A 84 KLELIESGP 92 (95)
T ss_dssp GEEECCSCS
T ss_pred HeEEcCcCC
Confidence 999876643
No 11
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.97 E-value=2.6e-30 Score=170.86 Aligned_cols=75 Identities=48% Similarity=0.878 Sum_probs=69.0
Q ss_pred CCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccC
Q psy6084 12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDR 87 (106)
Q Consensus 12 ~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~ 87 (106)
.+..|+|||||.|.. ...|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|..-.
T Consensus 4 ~~~~~~vG~rv~v~g-~~~GtVryvG~~~~~~G~wvGVelDep~GkndGsv~G~rYF~c~~~~G~Fv~~~kv~~~~ 78 (84)
T 2cp3_A 4 GSSGLRLGDRVLVGG-TKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIRIG 78 (84)
T ss_dssp SSCSCCTTCEEEETT-TEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESSCCCTTTEEEEEGGGEEECC
T ss_pred cccccccCCEEEECC-CCeEEEEEeccCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEEcHHHeEEcc
Confidence 355789999999963 578999999999999999999999999999999999999999999999999999998633
No 12
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.97 E-value=5.7e-31 Score=177.75 Aligned_cols=80 Identities=38% Similarity=0.696 Sum_probs=68.2
Q ss_pred CCCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccCCCc
Q psy6084 11 TLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGR 90 (106)
Q Consensus 11 ~~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~~~~ 90 (106)
..+..|+|||||.|.. ...|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|..-..+.
T Consensus 6 ~~~~~~~vG~rV~V~g-~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~~v~~~~~~~ 84 (96)
T 2z0w_A 6 SGEGELRLGERVLVVG-QRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRVTDSL 84 (96)
T ss_dssp -----CCTTCCCCCCC-CCCEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESSCCCTTSEEEECGGGCCCTTC--
T ss_pred CCcccCCCCCEEEECC-CcEEEEEEeccCCCCCCeEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHceeccchh
Confidence 4456799999999963 578999999999999999999999999999999999999999999999999999999765554
Q ss_pred c
Q psy6084 91 A 91 (106)
Q Consensus 91 ~ 91 (106)
.
T Consensus 85 ~ 85 (96)
T 2z0w_A 85 D 85 (96)
T ss_dssp -
T ss_pred h
Confidence 3
No 13
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=4.5e-30 Score=177.60 Aligned_cols=75 Identities=44% Similarity=0.726 Sum_probs=69.8
Q ss_pred CCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084 12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD 86 (106)
Q Consensus 12 ~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~ 86 (106)
.+..|+|||||.|...+..|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|..-
T Consensus 30 ~~~~l~VG~RV~V~~~g~~GtVRyvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFVr~~~v~~~ 104 (112)
T 2coy_A 30 SARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVF 104 (112)
T ss_dssp SCCCCCTTCEEEETTTCCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCCTTTEEEECGGGEEEC
T ss_pred ccccCCCCCEEEECCCCeEEEEEEeeecCCCCCcEEEEEECCCCCCCCCEECCEEeeecCCCeEEEEchHHeEEc
Confidence 345799999999975468999999999999999999999999999999999999999999999999999999863
No 14
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=2e-30 Score=174.81 Aligned_cols=77 Identities=44% Similarity=0.825 Sum_probs=70.3
Q ss_pred CCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccCCCc
Q psy6084 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGR 90 (106)
Q Consensus 13 ~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~~~~ 90 (106)
...|+|||||.|.. ...|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|.......
T Consensus 14 ~~~~~vG~RV~V~g-~~~GtVryvG~v~~~~G~wvGVelDep~GKnDGsv~G~rYF~C~~~~G~Fv~~~kv~~~~~~~ 90 (95)
T 2cp0_A 14 ALGLRLGDRVLLDG-QKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKAVDAS 90 (95)
T ss_dssp HHTCCTTCEEEETT-TEEEEEEEEECCSSSCSCEEEEEESSSCCSBCSEETTEECCCCSSSCEEEECGGGEEECSCCC
T ss_pred ccCCCCCCEEEECC-CCeEEEEEecccCCCCCcEEEEEecCCCCcCCCEECCEEeeecCCCcEEEEcHHHeecCCCCC
Confidence 45699999999973 578999999999999999999999999999999999999999999999999999999754433
No 15
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=99.96 E-value=2.4e-30 Score=174.36 Aligned_cols=76 Identities=39% Similarity=0.744 Sum_probs=70.2
Q ss_pred CCCCcccccCeEEEe-CC--CceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084 11 TLPEWVCLGESVLIR-PY--NSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD 86 (106)
Q Consensus 11 ~~~~~l~vG~rV~v~-~~--~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~ 86 (106)
+.+..|+||+||.|. +. ..+|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|...
T Consensus 7 ~~~~~~~vG~rv~V~~~g~~~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~~v~~g 85 (95)
T 1lpl_A 7 EAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVKVG 85 (95)
T ss_dssp HHHHTCCTTCEEEECCTTSCCEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCCTTSEEEECGGGEEES
T ss_pred hhhhcCCCCCEEEEccCCCCceEEEEEEecccCCCCCEEEEEEccCCCCccCCEECCEEEeEeCCCEEEEEcHHHceEC
Confidence 345678999999997 33 58999999999999999999999999999999999999999999999999999999875
No 16
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.96 E-value=7.9e-30 Score=173.87 Aligned_cols=78 Identities=38% Similarity=0.726 Sum_probs=71.2
Q ss_pred CCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccCCCcc
Q psy6084 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGRA 91 (106)
Q Consensus 13 ~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~~~~~ 91 (106)
.+.|+|||||.|.. ...|||||+|++++..|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|.....+.+
T Consensus 22 ~~~~~vG~RV~V~g-~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~~~~ 99 (102)
T 1whj_A 22 SLGLKLGDRVVIAG-QKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISKLKDSGP 99 (102)
T ss_dssp HHTCCTTCEEEETT-TEEEEEEEEEECSSSCSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGEEESSSCCC
T ss_pred hhcCcCCCEEEECC-CCEEEEEEeeecCCCCCeEEEEEeCCCCCccCCEECCEEecccCCCeEEEEeHHHccccCCCCC
Confidence 45699999999963 5789999999999999999999999999999999999999999999999999999997655543
No 17
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=99.96 E-value=9.8e-30 Score=169.98 Aligned_cols=71 Identities=46% Similarity=0.908 Sum_probs=67.0
Q ss_pred cccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084 15 WVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD 86 (106)
Q Consensus 15 ~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~ 86 (106)
+|+|||||.|.. ...|||||+|++++..|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|...
T Consensus 1 ~l~vG~rV~V~g-~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~p~~G~Fv~~~kv~~~ 71 (90)
T 2e3h_A 1 ELKIGDRVLVGG-TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKI 71 (90)
T ss_dssp CCCTTCEEEETT-TEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESCCCCTTCEEEEEGGGEEET
T ss_pred CCcCCCEEEECC-CCEEEEEEeccCCCCCCeEEEEEECCCCCCCCCEECCEEeeecCCCcEEEEcHHHeEEC
Confidence 478999999963 57899999999999999999999999999999999999999999999999999999975
No 18
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=4.3e-29 Score=174.88 Aligned_cols=77 Identities=40% Similarity=0.700 Sum_probs=70.6
Q ss_pred CCCCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccC
Q psy6084 10 VTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDR 87 (106)
Q Consensus 10 ~~~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~ 87 (106)
.+....|+||+||.|.. ...|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|..-.
T Consensus 26 ~~~~~~l~VG~RV~V~g-~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kv~~~p 102 (122)
T 2coz_A 26 ADELFDFHIGDRVLIGN-VQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKISHIP 102 (122)
T ss_dssp CCSCSSCCTTEEEEETT-TEEEEEEEEEECSSSSSEEEEEEESSTTSSBCSEETTEECCCCCSSCEEEECGGGEECCC
T ss_pred ccccccCcCCCEEEECC-CcEEEEEEecccCCCCCeEEEEEeCCCCCccCCEECCEEeeecCCCcEEEecHHHCccCC
Confidence 45556899999999973 589999999999999999999999999999999999999999999999999999998533
No 19
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=5.4e-29 Score=177.95 Aligned_cols=77 Identities=43% Similarity=0.825 Sum_probs=70.8
Q ss_pred CCCCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccC
Q psy6084 10 VTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDR 87 (106)
Q Consensus 10 ~~~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~ 87 (106)
.+..+.|+|||||+|.. ...|||||+|++++..|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|....
T Consensus 59 ~~~~~~l~VG~RV~V~G-~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVrp~kv~~~~ 135 (141)
T 2cp5_A 59 EEFVDDFRVGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKV 135 (141)
T ss_dssp CCCCCCCCTTCEEEETT-SCEEEEEEEEECSSSSSEEEEEEESSSCCSCBSEETTEESSCCCTTTEEEECGGGEESSC
T ss_pred hhhhhcCcCCCEEEECC-CcEEEEEEeeecCCCCCcEEEEEeCCCCCccCCEECCEEeeecCCCcEEEechHHeeecc
Confidence 35567799999999973 579999999999999999999999999999999999999999999999999999998643
No 20
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.96 E-value=1.9e-29 Score=174.61 Aligned_cols=75 Identities=39% Similarity=0.748 Sum_probs=68.9
Q ss_pred CCCcccccCeEEEeC-C--CceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084 12 LPEWVCLGESVLIRP-Y--NSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD 86 (106)
Q Consensus 12 ~~~~l~vG~rV~v~~-~--~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~ 86 (106)
.+..|+||+||.|.. . ...|||||+|++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|...
T Consensus 29 ~~~~~~VG~RV~V~~~g~~~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~g 106 (113)
T 1whg_A 29 QASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVG 106 (113)
T ss_dssp HHTTSCSSCEEEECCSSSSCEEEEEEEEEECSSSSSEEEEEEESSSCCSBBSEETTEECSCCCTTTEEEECGGGEEEE
T ss_pred hhhcCCCCCEEEEecCCCcceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEEeeeCCCeEEEECHHHeEEC
Confidence 345799999999962 2 58999999999999999999999999999999999999999999999999999999863
No 21
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=3.1e-28 Score=178.71 Aligned_cols=73 Identities=45% Similarity=0.880 Sum_probs=68.8
Q ss_pred CCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccc
Q psy6084 12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQ 85 (106)
Q Consensus 12 ~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~ 85 (106)
.+..|+|||||+|.. ...|||||+|++++..|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|..
T Consensus 35 ~~~~l~VG~RV~V~g-~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kV~~ 107 (172)
T 2cp6_A 35 GERELKIGDRVLVGG-TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTK 107 (172)
T ss_dssp CSSCCCSSCEEEETT-TEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGCEE
T ss_pred CCccCccCCEEEECC-CceEEEEEeCcCCCCCCcEEEEEecCCCCccCCEECCEEeeeeCCCeEEEechHHeEE
Confidence 456799999999963 5889999999999999999999999999999999999999999999999999999986
No 22
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.95 E-value=7.8e-28 Score=161.28 Aligned_cols=77 Identities=19% Similarity=0.328 Sum_probs=68.3
Q ss_pred CCCCcccccCeEEEeCCC--ceEEEEEEeecCCC--CCeEEEEEEcCCCCCCCcEECCEEee-EeCCCCeeEEecCCccc
Q psy6084 11 TLPEWVCLGESVLIRPYN--SSGVIAYIGPTEFA--AGTWVGVELDAPTGKNDGTVQGTRYF-ESRPKHGIFVRADKLIQ 85 (106)
Q Consensus 11 ~~~~~l~vG~rV~v~~~~--~~GtVRyiG~~~~~--~g~~vGVElde~~Gk~dGt~~G~rYF-~c~p~~GiFv~~~kv~~ 85 (106)
+.+..|+||+||+|.... .+|||||+|+++.. .++|+|||||||.|||||+++|+||| .|.++||+||++.++.+
T Consensus 5 ~~~~~i~VG~Rc~V~~~~~~rrGtVrfvG~~~~~~~~G~wVGVelDEP~GknDGsv~G~ryF~~c~~~~g~fV~~~d~~~ 84 (92)
T 1whm_A 5 SSGPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDIIP 84 (92)
T ss_dssp CCSCSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESCSSCCTTTEEEEEGGGEEE
T ss_pred ccccCccccCeEEEcCCCceeeEEEEEEecCCCcCCCCeEEEEEcCCCCCCCCCeECCEEeccccCCCcceEcccccCcc
Confidence 345578999999997433 78999999999864 68999999999999999999999999 89999999999999976
Q ss_pred cC
Q psy6084 86 DR 87 (106)
Q Consensus 86 ~~ 87 (106)
+.
T Consensus 85 e~ 86 (92)
T 1whm_A 85 ES 86 (92)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 23
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=72.02 E-value=1.5 Score=30.20 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=18.9
Q ss_pred CCCCCCC-CCCCCCcccccCeEEEe
Q psy6084 2 SGDQSFD-DVTLPEWVCLGESVLIR 25 (106)
Q Consensus 2 ~~~~~~~-~~~~~~~l~vG~rV~v~ 25 (106)
.|++... +...+..|++||+|.|.
T Consensus 22 ~G~p~~R~~~~~~prF~vGDrVrvr 46 (126)
T 2zzd_A 22 IGDPQCFKGMAGKSKFNVGDRVRIK 46 (126)
T ss_dssp TCTTGGGTTTTCSCSSCTTCEEEEC
T ss_pred cCCCcccCCCCCCCccCCCCEEEEc
Confidence 3555555 77778889999999997
No 24
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=68.25 E-value=2.4 Score=31.53 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=33.2
Q ss_pred CCCCCCCCCCCCcccccCeEEEeC-------------CCceEEE-EEEeecCC----------CCCeEEEEEEcCC
Q psy6084 3 GDQSFDDVTLPEWVCLGESVLIRP-------------YNSSGVI-AYIGPTEF----------AAGTWVGVELDAP 54 (106)
Q Consensus 3 ~~~~~~~~~~~~~l~vG~rV~v~~-------------~~~~GtV-RyiG~~~~----------~~g~~vGVElde~ 54 (106)
|++...++..+..|+|||+|.|.. -+..|+| +..|.-.+ .+...+-|.++..
T Consensus 118 G~p~~r~~~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g~~~~pd~~a~g~~~~p~~lY~V~F~~~ 193 (219)
T 3qyh_B 118 GASAAREEGARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHGVFVTPDTAAHGKGEHPQHVYTVSFTSV 193 (219)
T ss_dssp CCCCBCSCCSCCCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEEEEECCHHHHTTTSCCCCEEEEEEEEEHH
T ss_pred CCCccCCCCCCCCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEecCccCccccccCCCCCCceeEEEEecch
Confidence 455566778888999999999973 2456776 45554322 1234566777643
No 25
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=65.31 E-value=11 Score=34.31 Aligned_cols=69 Identities=19% Similarity=0.292 Sum_probs=46.8
Q ss_pred CcccccCeEEEe-C-----CCceEEEEEEeecCCCCCeEEEEEEcCCC-CCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084 14 EWVCLGESVLIR-P-----YNSSGVIAYIGPTEFAAGTWVGVELDAPT-GKNDGTVQGTRYFESRPKHGIFVRADKLIQD 86 (106)
Q Consensus 14 ~~l~vG~rV~v~-~-----~~~~GtVRyiG~~~~~~g~~vGVElde~~-Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~ 86 (106)
..+..||||... . -..+|||- |.........+-|-||++. |.+ |++| .|.+..|.=|+.+.|.=-
T Consensus 1064 Q~F~LGDRVv~VqdsG~VPl~~kGTVV--Gi~~~~~~~~ldVvFD~~F~~G~--tlgg----rcs~~RG~~v~~s~lLNl 1135 (1155)
T 3pie_A 1064 QRFHLGDRVMYIQDSGKVPLHSKGTVV--GYTSIGKNVSIQVLFDNEIIAGN--NFGG----RLQTRRGLGLDSSFLLNL 1135 (1155)
T ss_pred CcccCCCeEEEecCCCCCccccceEEE--EEecCCCceEEEEEeccCccCCC--cccc----cccccccccccHHHeEEc
Confidence 348999998653 2 24678884 4443344678899999996 432 3444 499999999998887743
Q ss_pred CCCc
Q psy6084 87 RRGR 90 (106)
Q Consensus 87 ~~~~ 90 (106)
+..+
T Consensus 1136 T~~Q 1139 (1155)
T 3pie_A 1136 SDRQ 1139 (1155)
T ss_pred CCCc
Confidence 4433
No 26
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=64.18 E-value=2.4 Score=31.80 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCCcccccCeEEEe
Q psy6084 3 GDQSFDDVTLPEWVCLGESVLIR 25 (106)
Q Consensus 3 ~~~~~~~~~~~~~l~vG~rV~v~ 25 (106)
|++...+...+..|+|||+|.|.
T Consensus 129 G~p~~R~~~~~~~F~vGd~Vrv~ 151 (229)
T 3hht_B 129 GLSPLREISASPRFKVGERIKTK 151 (229)
T ss_dssp CCCCEECCSSCCSCCTTCEEEEC
T ss_pred CCCccCCCCCCCCCCCCCEEEEC
Confidence 44555666778889999999997
No 27
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=63.65 E-value=2.7 Score=31.39 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCCcccccCeEEEeC
Q psy6084 3 GDQSFDDVTLPEWVCLGESVLIRP 26 (106)
Q Consensus 3 ~~~~~~~~~~~~~l~vG~rV~v~~ 26 (106)
|++...+...+..|++||+|.|..
T Consensus 126 G~p~~r~~~~~~~F~vGd~Vrv~~ 149 (226)
T 1ugp_B 126 GLPASREVDRPPKFKEGDVVRFST 149 (226)
T ss_dssp CCCCEECCSSCCSCCTTCEEEECC
T ss_pred CCCccCCCCCCCcCCCCCeEEEcc
Confidence 445555677788899999999973
No 28
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.95 E-value=11 Score=22.00 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=17.1
Q ss_pred CCCCcccccCeEEEeC---CCceEEEE
Q psy6084 11 TLPEWVCLGESVLIRP---YNSSGVIA 34 (106)
Q Consensus 11 ~~~~~l~vG~rV~v~~---~~~~GtVR 34 (106)
+....+++||.|.|.. .++.|+|.
T Consensus 3 ~~~~~f~~GD~V~V~~Gpf~g~~G~V~ 29 (59)
T 2e6z_A 3 SGSSGFQPGDNVEVCEGELINLQGKIL 29 (59)
T ss_dssp CCCSSCCTTSEEEECSSTTTTCEEEEC
T ss_pred cccccCCCCCEEEEeecCCCCCEEEEE
Confidence 4556789999999984 34556654
No 29
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=52.77 E-value=20 Score=22.08 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=20.9
Q ss_pred CCCCCCCCCcccccCeEEEeCC---CceEEE
Q psy6084 6 SFDDVTLPEWVCLGESVLIRPY---NSSGVI 33 (106)
Q Consensus 6 ~~~~~~~~~~l~vG~rV~v~~~---~~~GtV 33 (106)
..+..++..-|++||.|.|..+ +..|.|
T Consensus 8 ~~p~~~LrK~F~~GDHVkVi~G~~~getGlV 38 (69)
T 2do3_A 8 EFPAQELRKYFKMGDHVKVIAGRFEGDTGLI 38 (69)
T ss_dssp CCCCCCCCSSCCTTCEEEESSSTTTTCEEEE
T ss_pred EEcHHHceeeccCCCeEEEeccEEcCceEEE
Confidence 4567788889999999999742 445554
No 30
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=42.83 E-value=18 Score=26.94 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.3
Q ss_pred CcccccCeEEEeCCCceEEEEEEeec
Q psy6084 14 EWVCLGESVLIRPYNSSGVIAYIGPT 39 (106)
Q Consensus 14 ~~l~vG~rV~v~~~~~~GtVRyiG~~ 39 (106)
..+++||+|.+. +..|+|.-+|-.
T Consensus 127 ~pf~vGD~I~i~--~~~G~V~~I~l~ 150 (285)
T 3udc_A 127 DQFSVGDYVTIN--GISGTVEEIGLR 150 (285)
T ss_dssp TSCCTTCEEEET--TEEEEEEEECSS
T ss_pred CCccCCCEEEEC--CEEEEEEEeeee
Confidence 468999999996 688999988865
No 31
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=42.18 E-value=73 Score=21.22 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=31.4
Q ss_pred CcccccCeEEEeC-CC---ceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecC
Q psy6084 14 EWVCLGESVLIRP-YN---SSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRAD 81 (106)
Q Consensus 14 ~~l~vG~rV~v~~-~~---~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~ 81 (106)
+.|++||+|+... .+ ..-++.|+..-+.....++=|+.++ | +-+...|+|=+|+.-.
T Consensus 19 ~eL~~GD~Vla~d~~G~~~~s~V~~~~~r~~~~~~~f~~I~t~~----------g-~~L~lTp~H~i~v~~~ 79 (145)
T 1at0_A 19 GELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTDG----------G-AVLTVTPAHLVSVWQP 79 (145)
T ss_dssp GGCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEETT----------S-CEEEECTTCEEEEEET
T ss_pred HHcCCCCEEEEECCCCCEEEEEEEEEEeeCCCcceeEEEEEECC----------C-CEEEEeCCCEEEEecC
Confidence 5678999998863 11 2233445532222234566666542 2 3456667776666543
No 32
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=39.33 E-value=1.1e+02 Score=22.47 Aligned_cols=74 Identities=27% Similarity=0.383 Sum_probs=49.1
Q ss_pred CCCcccccCeEEEeC----CCceEEEEEEeecCCC-CC-eEEEEEEcCCCC-CCCcEECCEEeeEeCCCCeeEEecCCcc
Q psy6084 12 LPEWVCLGESVLIRP----YNSSGVIAYIGPTEFA-AG-TWVGVELDAPTG-KNDGTVQGTRYFESRPKHGIFVRADKLI 84 (106)
Q Consensus 12 ~~~~l~vG~rV~v~~----~~~~GtVRyiG~~~~~-~g-~~vGVElde~~G-k~dGt~~G~rYF~c~p~~GiFv~~~kv~ 84 (106)
....|++|+.|.|.. ..+.|+|.++++.... .+ .-+=++++++.+ --.|.+--. .+......++.||.+-|.
T Consensus 218 ~~~~i~~G~~v~v~~~~~~~~~~g~v~~i~~~~d~~~~~~~v~~~~~~~~~~l~~G~~~~v-~i~~~~~~~l~vP~~Av~ 296 (359)
T 3lnn_A 218 DLGHVYVGQSATVKFDAYDDPQPGKVRYVGQILDADTRTTKVRMVFDNPDGRLRPGMFAQA-TFLSQPHEGIVVPMSAIV 296 (359)
T ss_dssp GSTTCCTTCEEEEBCSSCSSCEEEEEEECCCCCCTTSCCEEEEEEEECSSCCCCTTCEEEE-EEECCCEEEEEEEGGGCE
T ss_pred HHhhCCCCCeEEEEEcCCCCcEEEEEEEEecccCCCCcEEEEEEEecCCCCCcCCCCEEEE-EEecCCCCceEeCHHHhe
Confidence 345688999999862 3578999999987432 23 455678888754 244544323 334556778888888887
Q ss_pred cc
Q psy6084 85 QD 86 (106)
Q Consensus 85 ~~ 86 (106)
.+
T Consensus 297 ~~ 298 (359)
T 3lnn_A 297 QS 298 (359)
T ss_dssp ET
T ss_pred cc
Confidence 54
No 33
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=38.74 E-value=20 Score=26.71 Aligned_cols=25 Identities=16% Similarity=0.032 Sum_probs=20.7
Q ss_pred CCcccccCeEEEeCCCceEEEEEEeec
Q psy6084 13 PEWVCLGESVLIRPYNSSGVIAYIGPT 39 (106)
Q Consensus 13 ~~~l~vG~rV~v~~~~~~GtVRyiG~~ 39 (106)
...+++||+|.+. +..|+|.-+|-.
T Consensus 127 ~~pf~vGD~I~i~--g~~G~V~~I~l~ 151 (286)
T 2vv5_A 127 FRPFRAGEYVDLG--GVAGTVLSVQIF 151 (286)
T ss_dssp TCSSCTTCEEESS--SCEEEEEEECSS
T ss_pred cCCccCCCEEEEC--CEEEEEEEEEeE
Confidence 3568999999997 688999988855
No 34
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=37.83 E-value=42 Score=30.44 Aligned_cols=64 Identities=27% Similarity=0.311 Sum_probs=34.9
Q ss_pred CCcccccCeEEEe------CCCceEEEEEEeecC----C------CCCeEEEEEEcCCC-CCCCcEECCEEeeEeCCCCe
Q psy6084 13 PEWVCLGESVLIR------PYNSSGVIAYIGPTE----F------AAGTWVGVELDAPT-GKNDGTVQGTRYFESRPKHG 75 (106)
Q Consensus 13 ~~~l~vG~rV~v~------~~~~~GtVRyiG~~~----~------~~g~~vGVElde~~-Gk~dGt~~G~rYF~c~p~~G 75 (106)
...+.+||||..- +-+.+|||-=+-.+. . .....+.|-+|+|. |.++ +.| |.+..|
T Consensus 1056 ~q~F~LgDRVV~V~dsg~VP~g~rGTVVGI~~~~~~~~~r~e~~~~~~~~~dVlFD~~F~gG~~--i~G-----~~~~r~ 1128 (1140)
T 2y35_A 1056 KRPVRLFDRVVIVRTIYMVPVGTKGTVIGIHPVTDPNPVRLECVHAVDTFCKVLFDSPVPNCNN--IHG-----IAEDRV 1128 (1140)
T ss_dssp SSCCCTTCEEEECSCBTTBCTTCEEEECCBEEEECSSCSSTTTTTCEEEEEEEEESSCC-------------------CE
T ss_pred CCcccCcCeEEEEccCCCCcccceeEEEEEecCCCCcccccccccccCceeEEEecCCcCCCcc--cCC-----ccccce
Confidence 4688999998764 236789985333221 1 12568999999996 4332 333 333566
Q ss_pred eEEecCCc
Q psy6084 76 IFVRADKL 83 (106)
Q Consensus 76 iFv~~~kv 83 (106)
.=||...|
T Consensus 1129 yr~p~~~l 1136 (1140)
T 2y35_A 1129 YKVPEIAL 1136 (1140)
T ss_dssp EEEEGGGE
T ss_pred eeccccce
Confidence 66655544
No 35
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=36.33 E-value=11 Score=27.73 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=20.4
Q ss_pred CCCCcccccCeEEEeC-------------CCceEEE--EEEee
Q psy6084 11 TLPEWVCLGESVLIRP-------------YNSSGVI--AYIGP 38 (106)
Q Consensus 11 ~~~~~l~vG~rV~v~~-------------~~~~GtV--RyiG~ 38 (106)
..+..+++||+|.|.. -+..|+| +..|.
T Consensus 118 ~~~~~F~vGd~Vrv~~~~~~gHtR~P~YvRGk~G~I~~~~~g~ 160 (212)
T 3a8g_B 118 VETTTFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTISHRTTEK 160 (212)
T ss_dssp SCCCCCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEECSSC
T ss_pred CcCcccCCCCeEEEecCCCCCcccccHHHCCCeEEEEEEeccC
Confidence 5577899999999973 2466777 55554
No 36
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=36.30 E-value=55 Score=18.40 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=17.4
Q ss_pred CcccccCeEEEeC---CCceEEEEEE
Q psy6084 14 EWVCLGESVLIRP---YNSSGVIAYI 36 (106)
Q Consensus 14 ~~l~vG~rV~v~~---~~~~GtVRyi 36 (106)
..+.+||+|.|.. .+..|+|.-+
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v 28 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEI 28 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEE
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEE
Confidence 4578999999974 4677877765
No 37
>2kss_A Carotenogenesis protein CARS; antirepressor, activator, carotenoid biosynthesis, transcription, transcription regulation, transcription REGU; NMR {Myxococcus xanthus}
Probab=34.19 E-value=4.4 Score=26.52 Aligned_cols=39 Identities=31% Similarity=0.567 Sum_probs=26.4
Q ss_pred CCcccccCeEEEeCCCceEEE--EEEeecCCCCCeEEEEEEcCCC
Q psy6084 13 PEWVCLGESVLIRPYNSSGVI--AYIGPTEFAAGTWVGVELDAPT 55 (106)
Q Consensus 13 ~~~l~vG~rV~v~~~~~~GtV--RyiG~~~~~~g~~vGVElde~~ 55 (106)
...+.||..|.|.+-..-|+| ||.| ..|+.+|+-+|+|-
T Consensus 35 gapvrig~~v~iv~~s~~~si~~rflg----~sgivv~lvfddp~ 75 (106)
T 2kss_A 35 GAPVRIGAKVKVVPHSEDGTISQRFLG----QTGIVVGLVFDDPA 75 (106)
T ss_dssp SCSSCTTCEEECCSSCSSSCCCTTTTT----CEEEEEECCCCCCT
T ss_pred CCceEecceEEEeccccCCccChhhcC----ccceEEEEEeCCch
Confidence 345688999988754444554 2332 35889999999885
No 38
>2ivw_A PILP pilot protein; lipoprotein, pilus biogenesis, secretin; NMR {Neisseria meningitidis}
Probab=34.01 E-value=97 Score=20.51 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=39.4
Q ss_pred EEEEEeecCCCCCeEEEEEEcCC---------CCCCCcEE-----CCEEeeEe-CCCCeeEE-ecCCccccCCCc
Q psy6084 32 VIAYIGPTEFAAGTWVGVELDAP---------TGKNDGTV-----QGTRYFES-RPKHGIFV-RADKLIQDRRGR 90 (106)
Q Consensus 32 tVRyiG~~~~~~g~~vGVElde~---------~Gk~dGt~-----~G~rYF~c-~p~~GiFv-~~~kv~~~~~~~ 90 (106)
.++++|.+....+.|+=|+-|.. .|.|.|.+ +.+..=+. +++.|-++ ++..|.+.....
T Consensus 26 ~LkmvGtl~~~~~~~ALV~~dG~vyrVk~G~yiG~N~GrI~~It~~~I~l~E~v~Dg~G~W~eR~~~L~L~~~~~ 100 (113)
T 2ivw_A 26 NMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAELLLNSSDK 100 (113)
T ss_dssp TEEEEEEEECSSSEEEEEEETTEEEEECSSEEETTTEEEEEEEETTEEEEEEEEECTTSSEEEEEEEEECCCSCC
T ss_pred heEEEEEEccCCeEEEEEEeCCcEEEEccCCEeccCCCEEEEEeCCeEEEEEEEECCCCCEEEEeeEEEccCCCC
Confidence 47788888777778888885431 37888886 34555553 56688887 666776643333
No 39
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=33.29 E-value=41 Score=21.46 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=17.1
Q ss_pred CCCCCCCCCC-----CCCCcccccCeEEEe
Q psy6084 1 MSGDQSFDDV-----TLPEWVCLGESVLIR 25 (106)
Q Consensus 1 ~~~~~~~~~~-----~~~~~l~vG~rV~v~ 25 (106)
|+.+.++.+. .....|.+|++|.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~vG~kv~v~ 33 (92)
T 2ro0_A 4 MSHDGKEEPGIAKKINSVDDIIIKCQCWVQ 33 (92)
T ss_dssp CCCCSSCCCCEEECCSCTTSCCTTCEEEEE
T ss_pred ccccCCCCCcccccccccccccCCCEEEEE
Confidence 5555555444 355678999999986
No 40
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=29.87 E-value=20 Score=26.20 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=25.2
Q ss_pred CcccccCeEEEeC-------------CCceEEEE-EEeecCC----------CCCeEEEEEEcCC
Q psy6084 14 EWVCLGESVLIRP-------------YNSSGVIA-YIGPTEF----------AAGTWVGVELDAP 54 (106)
Q Consensus 14 ~~l~vG~rV~v~~-------------~~~~GtVR-yiG~~~~----------~~g~~vGVElde~ 54 (106)
..++|||+|.+.. -+..|+|- +.|...+ .+...+-|+++..
T Consensus 117 ~~F~vGd~Vrv~~~~~~gHtRlP~Y~rg~~G~I~~~~g~~v~Pd~~A~g~ge~p~~lY~V~F~~~ 181 (206)
T 4fm4_B 117 GGFKLGQRVHVKNEFVPGHTRFPAYIRGKAGVVVGISPAYPYPDAAAHGEYGFSEPTYDVCFKSK 181 (206)
T ss_dssp TCCCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEECCCEECHHHHTTTCCSCEECEEEEEEEHH
T ss_pred CCCcCCCEEEeCCCCCCCcccccHhhcCCeeEEEEEecCcCCcccccCCCCCCcceeEEEEEecc
Confidence 4699999999973 24567765 3343211 1335677887743
No 41
>4av2_M PILP protein, type IV pilus biogenesis and competence protein P; protein transport, outer membrane protein; 26.00A {Neisseria meningitidis MC58}
Probab=26.69 E-value=1.1e+02 Score=21.71 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=37.9
Q ss_pred EEEEEEeecCCCCCeEEEEEEcCC---------CCCCCcEE-----CCEEeeE-eCCCCeeEE-ecCCccccCCCcccc
Q psy6084 31 GVIAYIGPTEFAAGTWVGVELDAP---------TGKNDGTV-----QGTRYFE-SRPKHGIFV-RADKLIQDRRGRAMR 93 (106)
Q Consensus 31 GtVRyiG~~~~~~g~~vGVElde~---------~Gk~dGt~-----~G~rYF~-c~p~~GiFv-~~~kv~~~~~~~~~~ 93 (106)
-.++++|.+......|+=|+-|.. .|.|.|.+ +.+..-+ .+++.|-++ ++..|.+.....+..
T Consensus 93 d~L~mvG~l~~~~~~~alv~~dg~v~~V~~G~ylG~n~GrI~~I~~~~i~l~E~v~Dg~G~W~eR~~~L~L~~~~~~~~ 171 (181)
T 4av2_M 93 ENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAELLLNSSDKNTE 171 (181)
T ss_dssp TTEEEEEEECSSSCCEEEEEETTEEEEECSSEEETTTTEEEEEEETTEEEEEEEEECSSSSEEEEEEEEECCC------
T ss_pred hheEEEEEEEeCCEEEEEEecCCCEEEEccCCEeccCCcEEEEEeCCEEEEEEEeECCCCCEEEEeEEEEcCccccccc
Confidence 457889988766667777776532 37788876 3455555 356778777 666776655544433
No 42
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=26.24 E-value=61 Score=21.31 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=17.2
Q ss_pred CcccccCeEEEeC---CCceEEEEEEee
Q psy6084 14 EWVCLGESVLIRP---YNSSGVIAYIGP 38 (106)
Q Consensus 14 ~~l~vG~rV~v~~---~~~~GtVRyiG~ 38 (106)
-++.+||+|.|.. ....|.|-|+=+
T Consensus 69 I~i~~GD~V~ve~~~~~~~kG~I~~~~~ 96 (117)
T 2oqk_A 69 VWVNPGDIVLVSLRDFQDSKGDIILKYT 96 (117)
T ss_dssp SCCCTTCEEEEEECTTCTTEEEEEEECC
T ss_pred CcCCCCCEEEEEEEcCCCCeEEEEEEec
Confidence 3566899999963 234788887743
No 43
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=25.72 E-value=29 Score=20.74 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=9.6
Q ss_pred CcccccCeEEEeC
Q psy6084 14 EWVCLGESVLIRP 26 (106)
Q Consensus 14 ~~l~vG~rV~v~~ 26 (106)
-++.+||+|.+..
T Consensus 45 i~i~~GD~V~ve~ 57 (71)
T 1hr0_W 45 IRILPGDRVVVEI 57 (71)
T ss_dssp CCCCTTCEEEEEC
T ss_pred cCCCCCCEEEEEE
Confidence 3556899999863
No 44
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=25.49 E-value=94 Score=22.74 Aligned_cols=74 Identities=14% Similarity=0.051 Sum_probs=40.9
Q ss_pred CCCcccccCeEEEeC-----CCceEEEEEEeecCCC-CC---eEEEEEEcCCCCC-CCcEECCEEeeEeCCCCeeEEecC
Q psy6084 12 LPEWVCLGESVLIRP-----YNSSGVIAYIGPTEFA-AG---TWVGVELDAPTGK-NDGTVQGTRYFESRPKHGIFVRAD 81 (106)
Q Consensus 12 ~~~~l~vG~rV~v~~-----~~~~GtVRyiG~~~~~-~g---~~vGVElde~~Gk-~dGt~~G~rYF~c~p~~GiFv~~~ 81 (106)
....|++|+.|.+.. ..+.|+|.++.+.... .+ ..+=++++++.+. -.|.+--...-.-....++.||.+
T Consensus 203 ~~~~v~~G~~v~v~~~~~~~~~~~g~V~~i~~~~~~~~~~~~~~v~i~~~~~~~~l~~G~~~~v~i~~~~~~~~l~vP~~ 282 (341)
T 3fpp_A 203 DVIHLKPGQKAWFTVLGDQLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLS 282 (341)
T ss_dssp GSTTCCTTCCCEECCSSSSSSCBCCCEEEECSSCCBSSSCBCCEEEEEEECSSSCCCTTCEEEEEEESCCCCSSCC----
T ss_pred HHhhCCCCCEEEEEEecCCCCEEEEEEEEEecCccccCceEEEEEEEEeCCCccccCCCCEEEEEEEEccCCCcEEcchH
Confidence 345688999998862 2478999999887532 22 3566788877642 445543333322234567778887
Q ss_pred Cccc
Q psy6084 82 KLIQ 85 (106)
Q Consensus 82 kv~~ 85 (106)
-|..
T Consensus 283 Av~~ 286 (341)
T 3fpp_A 283 ALGD 286 (341)
T ss_dssp ----
T ss_pred HhcC
Confidence 7764
No 45
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=21.55 E-value=1e+02 Score=18.41 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=20.7
Q ss_pred cccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEe--CCCCeeEEecCCccccCCCcc
Q psy6084 15 WVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFES--RPKHGIFVRADKLIQDRRGRA 91 (106)
Q Consensus 15 ~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c--~p~~GiFv~~~kv~~~~~~~~ 91 (106)
.|++||.|... ..|+=+|.|-- --+-. |.- +.|+.. ..+.-+|||.+++..-.+..+
T Consensus 2 ~l~~GD~VVh~---~hGiG~~~gi~-----------~~~v~----g~~--~ey~~l~y~~~~~l~VPv~~~~~i~ry~g 60 (71)
T 3mlq_E 2 PHMPGDYLIHP---EHGVGQYLGLE-----------TREVL----GVK--RDYLVLRYKGEGKLYLPVEQLPLLKRHPG 60 (71)
T ss_dssp -----------------CEEEEEEE-----------EEEET----TEE--EEEEEEEETTTEEEEEESSSCC-------
T ss_pred cCCCCCEEEEC---CCeeEEEeEEE-----------EEEeC----Cee--EEEEEEEECCCCEEEEEhhhhcceeeecC
Confidence 47889988663 34666666532 21111 211 456653 466689999999987555443
No 46
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=20.31 E-value=72 Score=20.52 Aligned_cols=24 Identities=8% Similarity=-0.040 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCCCcccccCeEEEe
Q psy6084 2 SGDQSFDDVTLPEWVCLGESVLIR 25 (106)
Q Consensus 2 ~~~~~~~~~~~~~~l~vG~rV~v~ 25 (106)
||++..........|.+|++|.+.
T Consensus 12 ~~~~~~~~~~~~~~~~vG~kv~v~ 35 (94)
T 2rnz_A 12 SGLVPRGSHMSVDDIIIKCQCWVQ 35 (94)
T ss_dssp CCSSCSSCSSCGGGCCTTEEEEEE
T ss_pred cCCccCCCccccccccCCCEEEEE
Confidence 556656666667789999999996
No 47
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=20.24 E-value=52 Score=21.31 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=12.4
Q ss_pred CCCCCcccccCeEEEe
Q psy6084 10 VTLPEWVCLGESVLIR 25 (106)
Q Consensus 10 ~~~~~~l~vG~rV~v~ 25 (106)
...|..+++||+|+..
T Consensus 56 ~~~p~~VkvGD~Vlf~ 71 (99)
T 1p3h_A 56 KRIPLDVAEGDTVIYS 71 (99)
T ss_dssp CEECCSCCTTCEEEEE
T ss_pred EEEccccCCCCEEEEC
Confidence 3446678999999887
No 48
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=20.24 E-value=78 Score=20.99 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=16.2
Q ss_pred CCCCCCcccccCeEEEeCCCceEEEEEEeecC
Q psy6084 9 DVTLPEWVCLGESVLIRPYNSSGVIAYIGPTE 40 (106)
Q Consensus 9 ~~~~~~~l~vG~rV~v~~~~~~GtVRyiG~~~ 40 (106)
...+.+.|+.|++|+|. |++|-.=..+
T Consensus 54 ~~~lk~~lk~g~~v~V~-----GrLRm~p~~d 80 (105)
T 4dka_C 54 ASLLKDQVKLGSRVLVQ-----GTLRMNRHVD 80 (105)
T ss_dssp ------CCCTTCEEEEE-----EEEECCCEEC
T ss_pred HHHHHHHHhCCCEEEEE-----eEEEeeeccc
Confidence 34578889999999997 7887654443
Done!