RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6084
(106 letters)
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Length = 91
Score = 105 bits (263), Expect = 2e-31
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
+ G VL+ N + Y+GPT+FA+G W+G+EL + GKNDG V RYF +P
Sbjct: 10 TVKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKP 69
Query: 73 KHGIFVRADKLI 84
+G+ VR ++
Sbjct: 70 NYGVLVRPSRVT 81
>1txq_A Dynactin 1; protein complex, structural protein/protein binding
complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB:
2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Length = 93
Score = 103 bits (259), Expect = 1e-30
Identities = 33/71 (46%), Positives = 41/71 (57%)
Query: 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
+ +G V + G +AY+G T FA G WVGV LD GKNDGTVQG +YF
Sbjct: 10 ARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDE 69
Query: 73 KHGIFVRADKL 83
HGIFVR ++
Sbjct: 70 GHGIFVRQSQI 80
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein,
P150- glued, DAP-150, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.34.10.1
Length = 112
Score = 103 bits (259), Expect = 2e-30
Identities = 33/71 (46%), Positives = 41/71 (57%)
Query: 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
+ +G V + G +AY+G T FA G WVGV LD GKNDGTVQG +YF
Sbjct: 31 ARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDE 90
Query: 73 KHGIFVRADKL 83
HGIFVR ++
Sbjct: 91 GHGIFVRQSQI 101
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein,
CAP Gly protein complex, structural PR; HET: BME; 1.75A
{Homo sapiens} PDB: 2qk0_A
Length = 72
Score = 101 bits (254), Expect = 4e-30
Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 14 EWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPK 73
+ +GE V + N G I ++G T+FA G W G+ LD P GKNDG+V G RYF+ P
Sbjct: 1 DDFRVGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59
Query: 74 HGIFVRADKL 83
GIF R KL
Sbjct: 60 KGIFTRPSKL 69
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural
protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Length = 86
Score = 101 bits (253), Expect = 7e-30
Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 14 EWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPK 73
+ +GE V + N G I ++G T+FA G W G+ LD P GKNDG+V G RYF+ P
Sbjct: 1 DDFRVGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59
Query: 74 HGIFVRADKL 83
GIF R KL
Sbjct: 60 KGIFTRPSKL 69
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural
genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI;
1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB:
1tov_A
Length = 95
Score = 100 bits (252), Expect = 1e-29
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 13 PEWVCLGESVLIRPYNSS---GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFE 69
+ + +G + G +AY+G T+F G WVGV+ D P GKNDG+V G RYF+
Sbjct: 9 AKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFD 68
Query: 70 SRPKHGIFVRADKL 83
PK+G FVR +
Sbjct: 69 CDPKYGGFVRPVDV 82
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton
associated protein, KIAA0639, kinesin-like protein
gakin, structural genomics; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 100
Score = 100 bits (250), Expect = 3e-29
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESR 71
+PEW+ GE V + + +GV+ Y+GP +F GTWVGVELD P+GKNDG++ G +YF
Sbjct: 20 VPEWLREGEFVTVGA-HKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCN 78
Query: 72 PKHGIFVRADKL 83
P +G+ VR ++
Sbjct: 79 PGYGLLVRPSRV 90
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing,
ANK repeat, protein binding, structural genomics,
NPPSFA; 2.50A {Homo sapiens}
Length = 96
Score = 99.4 bits (248), Expect = 4e-29
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
+ LGE VL+ G I + G T FA G W G+EL+ P GKNDG+V G +YF P
Sbjct: 8 EGELRLGERVLV-VGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSP 66
Query: 73 KHGIFVRADKL 83
++GIF ++
Sbjct: 67 RYGIFAPPSRV 77
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated
protein, CYLN2, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.34.10.1
Length = 84
Score = 98.9 bits (247), Expect = 6e-29
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
+ LG+ VL+ + GV+ Y+G T+FA G W GVELD P GKNDG V GTRYF+ P
Sbjct: 5 SSGLRLGDRVLVGGTKT-GVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPP 63
Query: 73 KHGIFVRADKLIQ 85
K G+F K+I+
Sbjct: 64 KFGLFAPIHKVIR 76
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Length = 102
Score = 99.1 bits (247), Expect = 7e-29
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
+ LG+ V+I G + + G TEFA+G W G+ELD P GKN+G+V +YF+ P
Sbjct: 22 SLGLKLGDRVVIAGQKV-GTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAP 80
Query: 73 KHGIFVRADKLI 84
K+GIF K+
Sbjct: 81 KYGIFAPLSKIS 92
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural
protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB:
2e4h_A
Length = 90
Score = 98.2 bits (245), Expect = 1e-28
Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G+ VL+ +GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +PK+G+F
Sbjct: 4 IGDRVLV-GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 62
Query: 78 VRADKLIQ-DRRGRAMRSGGTGAMRRS 103
K+ + A+RR
Sbjct: 63 APVHKVTKIGFPSTTPAKAKANAVRRV 89
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton
associated protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.34.10.1
Length = 95
Score = 98.3 bits (245), Expect = 2e-28
Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
+ LG+ VL+ + G + + G TEFA+G WVGVELD P GKNDG+V G RYF P
Sbjct: 14 ALGLRLGDRVLLDGQKT-GTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPP 72
Query: 73 KHGIFVRADKLIQDRRGRAMRSG 95
K G+F K+ + SG
Sbjct: 73 KQGLFASVSKISKAVDASGPSSG 95
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated
protein, CYLN2, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Length = 95
Score = 97.9 bits (244), Expect = 2e-28
Identities = 34/72 (47%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
+GE V + GV+ Y+G T+FA G W GV LD P GKNDG V G RYFE
Sbjct: 16 LGDFVVGERVWVNGVKP-GVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPA 74
Query: 73 KHGIFVRADKLI 84
GIF R KL
Sbjct: 75 LQGIFTRPSKLT 86
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding,
cytoskeleton associated protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Length = 122
Score = 97.3 bits (242), Expect = 7e-28
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G+ VLI G++ + G T FA G W GVELD P G N+GT G YFE + KHGIF
Sbjct: 34 IGDRVLI-GNVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIF 92
Query: 78 VRADKL 83
K+
Sbjct: 93 APPQKI 98
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 141
Score = 97.7 bits (243), Expect = 8e-28
Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
+ +GE V + N G I ++G T+FA G W G+ LD P GKNDG+V G RYF+ P
Sbjct: 62 VDDFRVGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEP 120
Query: 73 KHGIFVRADKL 83
GIF R KL
Sbjct: 121 LKGIFTRPSKL 131
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, structural protein; NMR {Mus
musculus} SCOP: b.34.10.1
Length = 102
Score = 96.4 bits (240), Expect = 8e-28
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G+ VL+ G++ + G T+FA G W G+ELD PTGK+DG+V G RYF P+HG+F
Sbjct: 28 VGDQVLV-AGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVF 86
Query: 78 VRADKL 83
A ++
Sbjct: 87 APASRI 92
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton
associated protein, ckapi, structural genomics; NMR {Mus
musculus} SCOP: b.34.10.1
Length = 113
Score = 95.4 bits (237), Expect = 3e-27
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 1 MSGDQSFDDVTLPEWVCLGESVLIRPYNSS---GVIAYIGPTEFAAGTWVGVELDAPTGK 57
+ + ++ + +G +R + S G + Y+G T+F G WVGV D P GK
Sbjct: 18 EAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGK 77
Query: 58 NDGTVQGTRYFESRPKHGIFVRADKLI 84
NDG+V G RYFE + K+G FV+ +
Sbjct: 78 NDGSVNGKRYFECQAKYGAFVKPSAVT 104
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics,
riken structural genomics/proteomics initiative, RSGI,
antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Length = 104
Score = 94.8 bits (236), Expect = 3e-27
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 13 PEWVCLGESVLIRPYNSS-GVIAYIGPTEFAAGTWVGVELDAPT-GKNDGTVQGTRYFES 70
+ +G ++ GVI +IG G+EL+ G DGT +GTRYF
Sbjct: 15 SHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTC 74
Query: 71 RPKHGIFVRADKLIQDRRGRAM 92
K +FV+ D R ++
Sbjct: 75 ALKKALFVKLKSCRPDSRFASL 96
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 172
Score = 94.8 bits (235), Expect = 3e-26
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
+ +G+ VL+ +GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +P
Sbjct: 36 ERELKIGDRVLV-GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQP 94
Query: 73 KHGIFVRADKLIQDRRGRAMRSGGTGAMRRSTSR 106
K+G+F K+ + + R
Sbjct: 95 KYGLFAPVHKVTKIGFPSTTPAKAKANAVRRVMA 128
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.34.10.1
Length = 95
Score = 82.1 bits (203), Expect = 3e-22
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 18 LGESVLIRPYNSS----GVIAYIGP---TEFAAGTWVGVEL---DAPTGKNDGTVQGTRY 67
+G V ++ + GV+ + GP +G + GVEL G DG QG +
Sbjct: 10 VGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQL 69
Query: 68 FESRPKHGIFVRADKL 83
F+ G+FV DKL
Sbjct: 70 FQCDEDCGVFVALDKL 85
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.34.10.1
Length = 92
Score = 54.8 bits (131), Expect = 2e-11
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 21 SVLIRPYNSSGVIAYIG--PTEFAAGTWVGVELDAPTGKNDGTVQGTRYFE-SRPKHGIF 77
S+ + SG + + P + + G +VGV++D P G DG G + + + I
Sbjct: 17 SLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTIL 76
Query: 78 VRADKLIQDRRG 89
+ + +I + G
Sbjct: 77 LHINDIIPESSG 88
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic;
2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Length = 511
Score = 32.0 bits (71), Expect = 0.021
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 38 PTEFAAGTWVGVELDAPTGKNDGTVQGT 65
+ G G+ P G D + QG
Sbjct: 30 GGDVKPGGSSGLAPSMPPGWGDYSPQGI 57
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding,
serine/threonine-protein kinase, CGD3_920, transferase;
HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB:
3dfa_A 3ma6_A*
Length = 287
Score = 26.0 bits (58), Expect = 2.3
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 6/21 (28%)
Query: 22 VLIRPYN------SSGVIAYI 36
VL Y+ S+GVI YI
Sbjct: 194 VLRGTYDEKCDVWSAGVILYI 214
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase,
N-acetylglucosamine; 1.85A {Bacteroides
thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB:
2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A*
2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A*
2wzi_A* 2j4g_A*
Length = 716
Score = 26.4 bits (57), Expect = 2.3
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 28 NSSGVIAYIGPTEFAAGTWVGVELDAPT 55
N + ++AAG V +ELDA
Sbjct: 612 NRVLISPANEVVKWAAGNSVEIELDAIY 639
>1iiz_A Lysozyme; hydrolase; 2.40A {Antheraea mylitta} SCOP: d.2.1.2 PDB:
1gd6_A
Length = 120
Score = 25.3 bits (55), Expect = 3.0
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 4 DQSFDDVTLPEWVCL--GESVL----IRPYNSSGVIAYIGPTEFAAGTW 46
Q FD+ + +WVCL ES I N +G Y G + W
Sbjct: 14 KQGFDENLMRDWVCLVENESARYTDKIANVNKNGSRDY-GLFQINDKYW 61
>2fbd_A Lysozyme 1; digestive lysozime, hydrolase; HET: PEG; 1.90A {Musca
domestica} PDB: 2h5z_A* 3cb7_A
Length = 122
Score = 25.3 bits (55), Expect = 3.6
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 4 DQSFDDVTLPEWVCLGESV------LIRPYNSSGVIAYIGPTEFAAGTW 46
LP+W C+ E ++ P NS+G Y G + W
Sbjct: 14 ALGVPKSELPQWTCIAEHESSYRTNVVGPTNSNGSNDY-GIFQINNYYW 61
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 25.8 bits (57), Expect = 3.7
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 6/21 (28%)
Query: 22 VLIRPYN------SSGVIAYI 36
VL Y+ S+GVI YI
Sbjct: 194 VLRGTYDEKCDVWSAGVILYI 214
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4
calmodulin like EF...; calcium dependent protein kinase;
HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II}
PDB: 2qg5_A*
Length = 277
Score = 25.2 bits (56), Expect = 4.1
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 6/21 (28%)
Query: 22 VLIRPYN------SSGVIAYI 36
VL Y S+GV+ Y+
Sbjct: 179 VLEGLYGPECDEWSAGVMMYV 199
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc,
PSI-biology, structural genomics; 1.91A {Legionella
pneumophila subsp}
Length = 297
Score = 25.1 bits (55), Expect = 5.1
Identities = 5/36 (13%), Positives = 12/36 (33%)
Query: 24 IRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKND 59
+ + + ++G AG +G + T
Sbjct: 96 PKDKTKNPYLVFLGSDNLLAGKKLGEKALELTPSAK 131
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 25.0 bits (55), Expect = 6.2
Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 6/21 (28%)
Query: 22 VLIRPYN------SSGVIAYI 36
VL + YN S GVI YI
Sbjct: 219 VLKKKYNEKCDVWSCGVIMYI 239
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics,
parasitology, structural genomics consortium, SGC,
ATP-binding, nucleotide-binding; HET: ANP; 2.55A
{Toxoplasma gondii}
Length = 285
Score = 24.5 bits (54), Expect = 7.4
Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 6/21 (28%)
Query: 22 VLIRPYN------SSGVIAYI 36
V R S+GV+ Y
Sbjct: 197 VFKRDVTFKCDIWSAGVVMYF 217
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 24.7 bits (54), Expect = 7.4
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 6/21 (28%)
Query: 22 VLIRPYN------SSGVIAYI 36
VL + Y+ S GVI +I
Sbjct: 209 VLRKKYDEKCDVWSIGVILFI 229
>1g3p_A G3P, minor coat protein; filamentous bacteriophage, phage
display, selectively infective phages, viral protein;
HET: TRO; 1.46A {Enterobacteria phage M13} SCOP:
b.37.1.1 b.37.1.1 PDB: 2g3p_A 3dgs_A 3knq_A 1fgp_A
Length = 217
Score = 24.4 bits (52), Expect = 8.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 27 YNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQG 64
+N++GV+ G GTWV + L P + G+ G
Sbjct: 38 WNATGVVVCTGDETQCYGTWVPIGLAIPENEGGGSEGG 75
>1w2t_A Beta fructosidase; hydrolase, glycosidase, invertase, raffinose;
HET: SUC GLA CIT; 1.87A {Thermotoga maritima} SCOP:
b.29.1.19 b.67.2.3 PDB: 1uyp_A*
Length = 432
Score = 24.6 bits (54), Expect = 8.4
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 58 NDGTVQGTRYFESRPKHGIFVRADKL 83
ND R + + V+++++
Sbjct: 395 NDSIAFSFRIHPENVYNILSVKSNQV 420
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 24.7 bits (54), Expect = 9.1
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 6/21 (28%)
Query: 22 VLIRPYN------SSGVIAYI 36
VL Y+ S+GVI YI
Sbjct: 199 VLHGTYDEKCDVWSTGVILYI 219
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor,
spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis
compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB:
3kga_A* 3m42_A*
Length = 299
Score = 24.2 bits (53), Expect = 10.0
Identities = 7/21 (33%), Positives = 8/21 (38%), Gaps = 6/21 (28%)
Query: 22 VLIRPYN------SSGVIAYI 36
Y+ S GVI YI
Sbjct: 170 TTGEKYDKSCDMWSLGVIMYI 190
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.414
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,678,148
Number of extensions: 91490
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 46
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)