RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6084
(106 letters)
>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 94.8 bits (236), Expect = 8e-28
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESR 71
+PEW+ GE V + + +GV+ Y+GP +F GTWVGVELD P+GKNDG++ G +YF
Sbjct: 14 VPEWLREGEFVTV-GAHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCN 72
Query: 72 PKHGIFVRADKL 83
P +G+ VR ++
Sbjct: 73 PGYGLLVRPSRV 84
>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 91
Score = 94.8 bits (236), Expect = 1e-27
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
+ G VL+ N + Y+GPT+FA+G W+G+EL + GKNDG V RYF +P
Sbjct: 10 TVKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKP 69
Query: 73 KHGIFVRADKL 83
+G+ VR ++
Sbjct: 70 NYGVLVRPSRV 80
>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 72
Score = 92.9 bits (231), Expect = 4e-27
Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G V + G +AY+G T FA G WVGV LD GKNDGTVQG +YF HGIF
Sbjct: 4 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 63
Query: 78 VRADKL 83
VR ++
Sbjct: 64 VRQSQI 69
>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 91.0 bits (226), Expect = 4e-26
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G+ VLI G++ + G T FA G W GVELD P G N+GT G YFE + KHGIF
Sbjct: 27 IGDRVLIGNVQP-GILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIF 85
Query: 78 VRADKL 83
K+
Sbjct: 86 APPQKI 91
>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 89.4 bits (222), Expect = 9e-26
Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+GE V + N G I ++G T+FA G W G+ LD P GKNDG+V G RYF+ P GIF
Sbjct: 3 VGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIF 61
Query: 78 VRADKL 83
R KL
Sbjct: 62 TRPSKL 67
>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 71
Score = 89.4 bits (222), Expect = 9e-26
Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G+ VL+ + GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +PK+G+F
Sbjct: 3 IGDRVLVGGTKA-GVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 61
Query: 78 VRADKLIQ 85
K+ +
Sbjct: 62 APVHKVTK 69
>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3
{Caenorhabditis elegans [TaxId: 6239]}
Length = 98
Score = 89.9 bits (223), Expect = 1e-25
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 13 PEWVCLGESVLIRPYNSS---GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFE 69
+ + +G + G +AY+G T+F G WVGV+ D P GKNDG+V G RYF+
Sbjct: 12 AKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFD 71
Query: 70 SRPKHGIFVRADKL 83
PK+G FVR +
Sbjct: 72 CDPKYGGFVRPVDV 85
>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59
(1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 87.9 bits (218), Expect = 4e-25
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
LG+ VL+ + G + + G TEFA+G WVGVELD P GKNDG+V G RYF PK G+F
Sbjct: 13 LGDRVLLDGQKT-GTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLF 71
Query: 78 VRADKL 83
K+
Sbjct: 72 ASVSKI 77
>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 102
Score = 88.0 bits (218), Expect = 6e-25
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
LG+ V+I G + + G TEFA+G W G+ELD P GKN+G+V +YF+ PK+GIF
Sbjct: 27 LGDRVVIAGQKV-GTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIF 85
Query: 78 VRADKLI 84
K+
Sbjct: 86 APLSKIS 92
>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59
(1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 87.9 bits (218), Expect = 6e-25
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G+ VL+ G++ + G T+FA G W G+ELD PTGK+DG+V G RYF P+HG+F
Sbjct: 28 VGDQVLVAGQKQ-GIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVF 86
Query: 78 VRADKL 83
A ++
Sbjct: 87 APASRI 92
>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 85.7 bits (212), Expect = 6e-24
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 31 GVIAYIGPTEFAAGTWVGVEL-DAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRR 88
GVI +IG G+EL D G DGT +GTRYF K +FV+ D R
Sbjct: 34 GVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSR 92
>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 84.2 bits (208), Expect = 3e-23
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 18 LGESVLIRPYNSS---GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKH 74
+G +R + S G + Y+G T+F G WVGV D P GKNDG+V G RYFE + K+
Sbjct: 35 VGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKY 94
Query: 75 GIFVRADKL 83
G FV+ +
Sbjct: 95 GAFVKPSAV 103
>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId:
9606]}
Length = 160
Score = 84.3 bits (208), Expect = 1e-22
Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
+G+ VL+ + GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +PK+G+F
Sbjct: 34 IGDRVLVGGTKA-GVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 92
Query: 78 VRADKLI 84
K+
Sbjct: 93 APVHKVT 99
>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 76.4 bits (188), Expect = 2e-20
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 16 VCLGESVLIRPYNSS--GVIAYIG--PTEFAAGTWVGVELDAPTGKNDGTVQGTRYFE-S 70
+ + V ++ + G + + P + + G +VGV++D P G DG G + +
Sbjct: 10 LEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFA 69
Query: 71 RPKHGIFVRADKLIQDRRG 89
+ I + + +I + G
Sbjct: 70 CVESTILLHINDIIPESSG 88
>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 73.4 bits (180), Expect = 3e-19
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 26 PYNSSGVIAYIGPTEF---AAGTWVGVELD---APTGKNDGTVQGTRYFESRPKHGIFVR 79
GV+ + GP +G + GVEL G DG QG + F+ G+FV
Sbjct: 22 EEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVA 81
Query: 80 ADKL 83
DKL
Sbjct: 82 LDKL 85
>d1uypa1 b.29.1.19 (A:295-432) Beta-fructosidase (invertase),
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 138
Score = 24.9 bits (54), Expect = 1.6
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 58 NDGTVQGTRYFESRPKHGIFVRADKL 83
ND R + + V+++++
Sbjct: 101 NDSIAFSFRIHPENVYNILSVKSNQV 126
>d1juga_ d.2.1.2 (A:) Lysozyme {Australian echidna (Tachyglossus
aculeatus) [TaxId: 9261]}
Length = 125
Score = 24.4 bits (53), Expect = 2.5
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 3 GDQSFDDVTLPEWVCLGE 20
G + +TLP WVC
Sbjct: 16 GMNGYQHITLPNWVCTAF 33
>d1hfxa_ d.2.1.2 (A:) alpha-Lactalbumin {Guinea pig (Cavia
porcellus) [TaxId: 10141]}
Length = 123
Score = 24.0 bits (52), Expect = 3.7
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 7 FDDVTLPEWVCLGE 20
+ D+TLPEW+C+
Sbjct: 18 YRDITLPEWLCIIF 31
>d1gd6a_ d.2.1.2 (A:) Lysozyme {Silkworm (Bombyx mori) [TaxId:
7091]}
Length = 119
Score = 23.6 bits (51), Expect = 5.0
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 7 FDDVTLPEWVCLGE 20
F++ + WVCL E
Sbjct: 17 FEENLMRNWVCLVE 30
>d1yroa1 d.2.1.2 (A:1-123) alpha-Lactalbumin {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 123
Score = 23.3 bits (50), Expect = 6.6
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 7 FDDVTLPEWVCLGE 20
+ ++L EW C+
Sbjct: 18 YQGISLLEWACVLF 31
>d2vb1a1 d.2.1.2 (A:1-129) Lysozyme {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 129
Score = 22.9 bits (49), Expect = 7.4
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 3 GDQSFDDVTLPEWVCLGE 20
G ++ +L WVC +
Sbjct: 16 GLDNYRGYSLGNWVCAAK 33
>d1b9oa_ d.2.1.2 (A:) alpha-Lactalbumin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 123
Score = 22.9 bits (49), Expect = 8.7
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 1 MSGDQSFDDVTLPEWVCLGE 20
+ + + LPE +C
Sbjct: 12 LKDIDGYGGIALPELICTMF 31
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus
aculeatus) [TaxId: 5053]}
Length = 339
Score = 23.1 bits (49), Expect = 8.8
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 19 GESVLIRPYNSSGVIAYIGPTEFAAGTW------VGVELDAPTGKNDGTV--QGTRYFES 70
G ++ + N + + G T F W V TG + ++ G+R+++
Sbjct: 35 GTTLDLTKLNDGTHVIFSGETTFGYKEWSGPLISVSGSDLTITGASGHSINGDGSRWWDG 94
Query: 71 RPKHGIFVR 79
+G +
Sbjct: 95 EGGNGGKTK 103
>d1g3pa1 b.37.1.1 (A:1-65) N-terminal domains of the minor coat
protein g3p {Bacteriophage M13 [TaxId: 10870]}
Length = 65
Score = 22.3 bits (47), Expect = 9.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 27 YNSSGVIAYIGPTEFAAGTWVGVELDAP 54
+N++GV+ G GTWV + L P
Sbjct: 38 WNATGVVVCTGDETQCYGTWVPIGLAIP 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.414
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 400,545
Number of extensions: 16333
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 30
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)