Query psy6086
Match_columns 585
No_of_seqs 128 out of 244
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 17:15:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2909|consensus 100.0 2E-122 5E-127 942.4 33.6 379 1-581 1-380 (381)
2 PF03223 V-ATPase_C: V-ATPase 100.0 9E-120 2E-124 950.9 31.3 369 4-571 1-371 (371)
3 COG5127 Vacuolar H+-ATPase V1 100.0 2.4E-83 5.1E-88 646.7 30.0 367 2-576 4-382 (383)
4 PF03223 V-ATPase_C: V-ATPase 100.0 7.9E-48 1.7E-52 405.9 17.1 163 310-472 90-252 (371)
5 KOG2909|consensus 100.0 1.2E-46 2.7E-51 385.9 14.7 197 305-503 89-293 (381)
6 COG5127 Vacuolar H+-ATPase V1 100.0 1.8E-36 3.9E-41 307.0 13.6 164 309-472 90-253 (383)
7 PRK05771 V-type ATP synthase s 96.5 0.42 9.1E-06 55.0 22.3 265 249-539 8-299 (646)
8 PRK05771 V-type ATP synthase s 94.8 4 8.8E-05 47.1 21.7 126 141-276 82-207 (646)
9 PF01496 V_ATPase_I: V-type AT 86.5 2.1 4.7E-05 50.3 8.2 144 397-540 138-315 (759)
10 PF01496 V_ATPase_I: V-type AT 83.5 4.6 0.0001 47.6 9.2 94 204-297 138-245 (759)
11 PF06783 UPF0239: Uncharacteri 47.9 6.3 0.00014 34.9 0.1 11 501-511 16-26 (85)
12 COG5625 Predicted transcriptio 26.6 62 0.0013 29.9 2.9 37 323-359 73-112 (113)
13 KOG4451|consensus 24.1 2.7E+02 0.0059 29.2 7.2 92 258-391 30-135 (286)
14 PF05529 Bap31: B-cell recepto 22.2 2.6E+02 0.0056 27.3 6.6 39 336-374 152-190 (192)
15 COG4996 Predicted phosphatase 22.1 2.1E+02 0.0045 27.9 5.6 68 448-540 42-109 (164)
16 cd07645 I-BAR_IMD_BAIAP2L1 Inv 22.0 4.6E+02 0.0099 27.3 8.3 38 148-185 108-145 (226)
17 PF12329 TMF_DNA_bd: TATA elem 21.9 5E+02 0.011 22.2 7.4 62 280-377 11-72 (74)
No 1
>KOG2909|consensus
Probab=100.00 E-value=2.1e-122 Score=942.38 Aligned_cols=379 Identities=62% Similarity=1.022 Sum_probs=369.4
Q ss_pred CccEEEEeeCCCCC-hHHHHHHHhhhhccCCCCCccccccCCCCCCcChhhhhhcccccCCCCccccccccccccccccc
Q psy6086 1 MSEYWLISAPGDKT-CQQTWENLNNVTSKQNNLSENYKFHIPDLKVGTLDQLVGLSDDLGKLDTFVDSVTVGTLDQLVGL 79 (585)
Q Consensus 1 ~~~ywLvS~P~~~~-~~~~~~~L~~~~~~~~~~s~~~~f~iP~lKvGTLDsLv~lSDd~~~~~~~~~~~~~~~~~~~~~~ 79 (585)
|++|||||+|++++ ++++|++++..+++++++|.+++|+||+|||||||+||++||+
T Consensus 1 Ms~fwliSlP~~~~~~~~~~d~i~~~~sk~s~~~~vs~F~IP~fkvgsLD~Lv~~se~---------------------- 58 (381)
T KOG2909|consen 1 MSEFWLISLPGEKTGNQQTWDRINDLTSKRSNLSTVSKFNIPDFKVGSLDVLVGLSEE---------------------- 58 (381)
T ss_pred CcceEEEeCCcCCcccccHHHHHHHHHhccccccccccccCCCcccccHHHHHHHHHH----------------------
Confidence 89999999999877 8999999999999998899999999999999999999999999
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHhhhhhhHHHhhhhhhcCCcCHHhhhhhcccccccCCCCCCHHHHHHHHHHHHHHHHH
Q psy6086 80 SDDLGKLDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMANNNELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEA 159 (585)
Q Consensus 80 ~~~L~K~D~~ve~v~~Ki~~~~~~v~e~~~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKYp~~~~L~elv~~i~k~v~~id~ 159 (585)
|+|+|++||++++||++|+++++++.++++.+++++||+|+.+|+++|+||+||||+++||++++++|++++++||+
T Consensus 59 ---L~Kld~~~e~~i~ki~~~~~~~le~~s~~~~~~l~~n~~~~~ey~t~F~Wd~akf~~~~si~~iid~I~~e~~qie~ 135 (381)
T KOG2909|consen 59 ---LGKLDTFVEGLIKKIAGYLKEVLEDSSGKVGENLMANGVPLPEYLTRFQWDMAKFPTNQSIKEIIDLISKEIAQIEN 135 (381)
T ss_pred ---HhhHHHHHHHHHHHHHHHHHHHHhhcccchhhceeeCCcCHHHHHhHheehhhhccccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccccccCcccCCCCCccccCCcceEEEEEecCCChHHHHHhhhhcCCccccCCcc
Q psy6086 160 DLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQ 239 (585)
Q Consensus 160 dlK~k~s~Yn~~K~~L~~~~RK~~GnL~~rsL~dvV~~edfV~dSEyLtTllVvVPk~~~kewl~~YEtLt~~VVPRSs~ 239 (585)
|+|+|+++||++|++||+++||++|||++|||++||+|||||+|||||+||+|||||+.++||+++||||++||||||++
T Consensus 136 Dlk~r~a~yn~ak~nl~nlerK~~GsL~~rsL~~IVk~edfvl~SEyL~tllVvVPK~~~~df~~~YEtlsd~VvPrSsk 215 (381)
T KOG2909|consen 136 DLKTRAAAYNNAKGNLQNLERKKTGSLSTRSLADIVKKEDFVLDSEYLTTLLVVVPKALVKDFLKSYETLSDMVVPRSSK 215 (381)
T ss_pred HHHHHHHHHHhHHHHHHHHhhhccCChhhhhHHHhCCchhhccchhhheeEEEEeeccchHHHHHHHHhhccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeEEEEEecccHHHHHHHHHHCCCeeeecccCHHHHHhchHHHHHHHHHHhhhcCcccCCCCCCCcchhhhh
Q psy6086 240 LVSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQFGYATNSLPFLSSDELGNY 319 (585)
Q Consensus 240 ~I~eD~e~~Ly~VtlFKk~~deF~~~aRekkfiVRdF~ydee~~~~~~~e~~~l~~~~k~~~~~~t~s~~~~~~~~~~~y 319 (585)
+|.||+||.||+||||||++|+|+++|||+||+||||.|++++++++++|++++++++++|+
T Consensus 216 ki~eD~Ey~Lf~V~lFkk~~edFr~~ArE~kF~vRdF~y~ee~~e~~k~E~~ra~~~~k~~~------------------ 277 (381)
T KOG2909|consen 216 KINEDAEYVLFTVTLFKKVAEDFRTKAREKKFIVRDFDYNEEEIETEKAEMDRAATDKKSMR------------------ 277 (381)
T ss_pred hcccccceEEEEEEEeehhHHHHHHHHHHcCCceeeccccHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 99999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhccccccCCCccchHHHHHHHHHHHHhhHHHHHHhHHHhhhhHHhHhhhhhhccCCccccccccccccccccccccc
Q psy6086 320 ITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEY 399 (585)
Q Consensus 320 i~~f~Wd~~ky~~~~~l~~~v~~i~~~v~~l~~~lk~~~~~Y~~~k~~~~~~~rk~~GnL~~~~L~~iv~~e~~~~dte~ 399 (585)
T Consensus 278 -------------------------------------------------------------------------------- 277 (381)
T KOG2909|consen 278 -------------------------------------------------------------------------------- 277 (381)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEEeeCcchhHHHHhhhhhccccccCccccccccCcceeeeeeehhhhhHHHHHHHHhhhhccccccCCCccchHH
Q psy6086 400 LTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILPHSFGPLV 479 (585)
Q Consensus 400 L~t~~V~Vpk~~~~df~~sye~l~~~VVP~S~~~i~~D~~~~Ly~V~ifk~~~~~f~~~~re~~~~~r~f~~~~~~~~L~ 479 (585)
+.|+
T Consensus 278 ----------------------------------------------------------------------------~~Ll 281 (381)
T KOG2909|consen 278 ----------------------------------------------------------------------------GPLL 281 (381)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 9999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC
Q psy6086 480 RWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRLRDVLQQLYGHLDSSAQGGSQHHDSVEIPG 559 (585)
Q Consensus 480 r~~~~~fse~f~awiHlKalRvFVESVLRYGLP~~f~a~~i~p~~k~~kkl~~~L~~~~~~l~~~~~~~~~~~~~~~~~~ 559 (585)
|||++||||+|++|||||||||||||||||||||+|++++++|++|+.+|++.+|.+.||||++++.+ ..|++.++||
T Consensus 282 r~~kv~fsEvF~~wiHiKaLRvfVESVlRYGLP~~F~a~~~~p~kKs~~k~r~iL~~~~~~ld~~~~~--~~da~~~~~g 359 (381)
T KOG2909|consen 282 RWLKVNFSEVFIAWIHIKALRVFVESVLRYGLPPNFQAVLLQPNKKSEKKLRSILISLYGHLDSNAAA--VYDASVDIPG 359 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchheeeecCCchhHHHHHHHHHHHhccccccchh--hccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998762 3456688999
Q ss_pred CCCCCCcccceEEEEEeecccc
Q psy6086 560 LGFGQADYFPYVYYKINIDMLD 581 (585)
Q Consensus 560 ~~~~~~~~~pyV~~~i~~~~~~ 581 (585)
+++ |+||+|||+|+|++.+++
T Consensus 360 lnl-d~ey~PfV~~~I~~~~~e 380 (381)
T KOG2909|consen 360 LNL-DEEYFPFVFFTINLYGEE 380 (381)
T ss_pred CCC-CCceeeEEEEEecccccc
Confidence 885 589999999999999876
No 2
>PF03223 V-ATPase_C: V-ATPase subunit C; InterPro: IPR004907 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C subunit that is part of the V1 complex, and is localised to the interface between the V1 and V0 complexes []. This subunit does not show any homology with F-ATPase subunits. The C subunit plays an essential role in controlling the assembly of V-ATPase, acting as a flexible stator that holds together the catalytic (V1) and membrane (V0) sectors of the enzyme []. The release of subunit C from the ATPase complex results in the dissociation of the V1 and V0 subcomplexes, which is an important mechanism in controlling V-ATPase activity in cells. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033180 proton-transporting V-type ATPase, V1 domain; PDB: 1U7L_A.
Probab=100.00 E-value=8.6e-120 Score=950.91 Aligned_cols=369 Identities=60% Similarity=0.979 Sum_probs=291.7
Q ss_pred EEEEeeCCCCChHHH-HHHHhhhhccCCCCCccccccCCCCCCcChhhhhhcccccCCCCcccccccccccccccccccc
Q psy6086 4 YWLISAPGDKTCQQT-WENLNNVTSKQNNLSENYKFHIPDLKVGTLDQLVGLSDDLGKLDTFVDSVTVGTLDQLVGLSDD 82 (585)
Q Consensus 4 ywLvS~P~~~~~~~~-~~~L~~~~~~~~~~s~~~~f~iP~lKvGTLDsLv~lSDd~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (585)
|||||+|+++++++. |+.|+..+++.++.+++++|+||+||+||||+||+||||
T Consensus 1 ywLvs~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~IP~lKvgTLDsLv~lsDe------------------------- 55 (371)
T PF03223_consen 1 YWLVSLPNEKSSQQSIWEKLQLVTSKSNNLSTVSKFNIPDLKVGTLDSLVQLSDE------------------------- 55 (371)
T ss_dssp EEEEEEETT---TTS--HHHHHHHTGGGGTSEEEE------B-S-GGGHHHHHHH-------------------------
T ss_pred CEEEECCCCCCCcchHHHHHHHHhhccCCCCceeeecCCcCCcccHHHHHHHHHH-------------------------
Confidence 899999998887766 999998887777788999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhhhhHHHhhhhhhcCCcCHHhhhhhcccccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy6086 83 LGKLDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMANNNELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLK 162 (585)
Q Consensus 83 L~K~D~~ve~v~~Ki~~~~~~v~e~~~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKYp~~~~L~elv~~i~k~v~~id~dlK 162 (585)
|+|+|++||++++||+++++++++++++++.+++++||+|+++||++|+||+||||+++||+||+++|++++++||+|+|
T Consensus 56 L~KlD~~~e~~~~Ki~~~~~~l~~~~~~~~~~~l~v~~~~~~~yl~~F~Wd~aKy~~~~~l~el~~~i~~~v~~id~dlk 135 (371)
T PF03223_consen 56 LAKLDSFVESVVRKIERQLRDLLEGDKDKLQENLLVNGVSLEQYLTRFQWDDAKYPTRRPLKELVDIISKEVSQIDNDLK 135 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TSS-SSS--S--BTTB-HHHHHHT----TTTS-TTSBHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccceeeEEEECCCcHHHHHHHheehhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccccCcccCCCCCccccCCcceEEEEEecCCChHHHHHhhhhcCCccccCCccccc
Q psy6086 163 TKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 242 (585)
Q Consensus 163 ~k~s~Yn~~K~~L~~~~RK~~GnL~~rsL~dvV~~edfV~dSEyLtTllVvVPk~~~kewl~~YEtLt~~VVPRSs~~I~ 242 (585)
+|+++||++|++|++++||++|||++|||+|||+|+|||+|||||||++|||||++++||+++||+|++|||||||++|+
T Consensus 136 ~k~~~Yn~~K~~l~~~~RK~~GnL~~rsL~~iV~~ed~v~dSEyL~Tl~VvVPk~~~~ewl~~YEtL~~~VVPrSs~~i~ 215 (371)
T PF03223_consen 136 SKSSAYNNAKSNLQALERKQTGNLSVRSLSDIVKPEDFVLDSEYLTTLLVVVPKNSVKEWLKSYETLTDMVVPRSSKKIA 215 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-S-TTTS--TTT--GGGS--S-SSEEEEEEEEEGGGHHHHHHHGGGSSTTB-TT--EEEE
T ss_pred HHHHHHHHHHHHHHHHhhhccCccccccHHhhCCHHhcccccccceEEEEEechhhHHHHHHHHhccCCccCCChHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeEEEEEecccHHHHHHHHHHCCCeeeecccCHHHHHhchHHHHHHHHHHhhhcCcccCCCCCCCcchhhhhhhh
Q psy6086 243 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQFGYATNSLPFLSSDELGNYITQ 322 (585)
Q Consensus 243 eD~e~~Ly~VtlFKk~~deF~~~aRekkfiVRdF~ydee~~~~~~~e~~~l~~~~k~~~~~~t~s~~~~~~~~~~~yi~~ 322 (585)
+|+||+||+||||||+++||+++|||+||+||||.|||+.+++.++|+++++++++++|
T Consensus 216 eD~ey~L~~VtlFkk~~~eF~~~~re~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~--------------------- 274 (371)
T PF03223_consen 216 EDSEYVLFSVTLFKKVVDEFKNKCREKKFIVRDFKYDEEESEEEKEEREKLETEEKKQW--------------------- 274 (371)
T ss_dssp E-SSEEEEEEEEEGGGHHHHHHHHHHTT-EEE-----HHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred cCCCeEEEEEEEEeccHHHHHHHHHHcCCeeeecccCHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCCccchHHHHHHHHHHHHhhHHHHHHhHHHhhhhHHhHhhhhhhccCCccccccccccccccccccccceEE
Q psy6086 323 FQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTT 402 (585)
Q Consensus 323 f~Wd~~ky~~~~~l~~~v~~i~~~v~~l~~~lk~~~~~Y~~~k~~~~~~~rk~~GnL~~~~L~~iv~~e~~~~dte~L~t 402 (585)
T Consensus 275 -------------------------------------------------------------------------------- 274 (371)
T PF03223_consen 275 -------------------------------------------------------------------------------- 274 (371)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeeCcchhHHHHhhhhhccccccCccccccccCcceeeeeeehhhhhHHHHHHHHhhhhccccccCCCccchHHHHH
Q psy6086 403 LLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILPHSFGPLVRWL 482 (585)
Q Consensus 403 ~~V~Vpk~~~~df~~sye~l~~~VVP~S~~~i~~D~~~~Ly~V~ifk~~~~~f~~~~re~~~~~r~f~~~~~~~~L~r~~ 482 (585)
+.|+|||
T Consensus 275 -------------------------------------------------------------------------~~L~r~~ 281 (371)
T PF03223_consen 275 -------------------------------------------------------------------------GELLRWC 281 (371)
T ss_dssp -------------------------------------------------------------------------HHHHHHH
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 9999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchhHHHHHHHHHhcCCCCCCCCCCCC-CCCCCCCCCC
Q psy6086 483 KVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRLRDVLQQLYGHLDSSAQGGSQH-HDSVEIPGLG 561 (585)
Q Consensus 483 ~~~fse~f~awiHlKalRvFVESVLRYGLP~~f~a~~i~p~~k~~kkl~~~L~~~~~~l~~~~~~~~~~-~~~~~~~~~~ 561 (585)
++||||+|++|||||||||||||||||||||+|++++++|++|+++|++++|.++||||++++.+++.. ++..|+||++
T Consensus 282 ~~~fse~f~awiHlKalRvFVESVLRYGLP~~F~a~ll~p~~k~~kKl~~~L~~~f~~l~~~~~~~~~~~~~~~~~~~l~ 361 (371)
T PF03223_consen 282 KTNFSEAFSAWIHLKALRVFVESVLRYGLPPNFQAFLLKPNKKKEKKLRKELNKLFGYLGSNAFSYDKEGEINVDDPGLS 361 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-SS--EEEEEEEE-TT-HHHHHHHHHHHHGGGG-TT-----------------
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCCceEEEEEeCCchHHHHHHHHHHHhccccccccccccccccccCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999977664332 3457889998
Q ss_pred CCCCcccceE
Q psy6086 562 FGQADYFPYV 571 (585)
Q Consensus 562 ~~~~~~~pyV 571 (585)
++++||||||
T Consensus 362 ~~~~ey~pyV 371 (371)
T PF03223_consen 362 LGDQEYYPYV 371 (371)
T ss_dssp -------SSE
T ss_pred CCCCccCCCC
Confidence 8999999998
No 3
>COG5127 Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion]
Probab=100.00 E-value=2.4e-83 Score=646.71 Aligned_cols=367 Identities=29% Similarity=0.475 Sum_probs=332.0
Q ss_pred ccEEEEeeCCCC-----ChHHHHHHHhhhhccCCCCCccccccCCCCCCcChhhhhhcccccCCCCcccccccccccccc
Q psy6086 2 SEYWLISAPGDK-----TCQQTWENLNNVTSKQNNLSENYKFHIPDLKVGTLDQLVGLSDDLGKLDTFVDSVTVGTLDQL 76 (585)
Q Consensus 2 ~~ywLvS~P~~~-----~~~~~~~~L~~~~~~~~~~s~~~~f~iP~lKvGTLDsLv~lSDd~~~~~~~~~~~~~~~~~~~ 76 (585)
+.|||||+|.+. +.++.|+.... -+.+++|.+|+||+|+||.||.+|++
T Consensus 4 sdFilvslP~~~~Gs~~d~d~~~~l~gg-------rstvs~f~~P~Fk~~SLd~lI~qsE~------------------- 57 (383)
T COG5127 4 SDFILVSLPVEEDGSRPDEDQIWDLYGG-------RSTVSRFLLPSFKGVSLDGLINQSER------------------- 57 (383)
T ss_pred cceEEEeccccccCCCCcHHHHHHHhcC-------ccccccccCCCccccchHHHHHHHHH-------------------
Confidence 469999999632 23456664443 25678999999999999999999999
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHhhhhhhHHHhhhhhhcCCcCHHhhhhhcccccccCCCCCCHHHHHHHHHHHHHH
Q psy6086 77 VGLSDDLGKLDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMANNNELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQ 156 (585)
Q Consensus 77 ~~~~~~L~K~D~~ve~v~~Ki~~~~~~v~e~~~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKYp~~~~L~elv~~i~k~v~~ 156 (585)
|+|+|.+|++.+.||.++++..++...+....--+++|.++ +|+..|+||+.+|..+++|++++..|..+..+
T Consensus 58 ------L~k~d~qc~~aIsKi~~i~~g~~~ss~gd~~~~~iv~~~~p-Ey~~~f~W~~~~F~~nKsI~~~i~li~~E~~~ 130 (383)
T COG5127 58 ------LGKLDKQCEGAISKILKIFMGYCRSSNGDRVGKGIVYGSTP-EYGDFFEWDRQSFVTNKSIEKAILLIDGEYRR 130 (383)
T ss_pred ------HhhHHHHHHHHHHHHHHHHHhhhccccccccccccccCCch-hhhhhhhcchhheeccccHHHHHHHhhhHHHH
Confidence 99999999999999999999998755544444455666655 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccccccCcccCCCCCccccCCcceEEEEEecCCChHHHHHhhhhcCCccccC
Q psy6086 157 IEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPR 236 (585)
Q Consensus 157 id~dlK~k~s~Yn~~K~~L~~~~RK~~GnL~~rsL~dvV~~edfV~dSEyLtTllVvVPk~~~kewl~~YEtLt~~VVPR 236 (585)
|++|+|.|..+|+.+|.+++++|||++|||+.|||++||++||+|.+|||||+++|||||+.++||+++||||++.|+|+
T Consensus 131 ~~~d~r~~~~~f~~Ak~~~~~~qrk~~G~Ls~~sL~~IV~~eDvv~gse~Lt~v~vaVpk~l~~~F~~syeTls~~V~p~ 210 (383)
T COG5127 131 ISKDYREKAEEFDGAKRECEKLQRKTRGSLSDISLGIIVEREDVVEGSEFLTVVYVAVPKALVPEFNRSYETLSPHVSPD 210 (383)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhccCChhhhhHhhhcCchhhccchhhheeeEEEehhhhhHHHHhhhhhcCcccChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCceeEEEEEecccHHHHHHHHHHCCCeeeecccCHHHHHhchHHHHHHHHHHhhhcCcccCCCCCCCcchh
Q psy6086 237 SSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQFGYATNSLPFLSSDEL 316 (585)
Q Consensus 237 Ss~~I~eD~e~~Ly~VtlFKk~~deF~~~aRekkfiVRdF~ydee~~~~~~~e~~~l~~~~k~~~~~~t~s~~~~~~~~~ 316 (585)
|++++++|.||.||+|.+|||-+++|+++|||+||+||||.|+++..++++.|++.++..++++.
T Consensus 211 sa~kv~~D~EyvLf~V~vfkk~~~~f~t~are~kf~vref~~~~~l~e~~~~e~d~Aa~ke~~m~--------------- 275 (383)
T COG5127 211 SAEKVNSDEEYVLFKVYVFKKGEEDFRTMAREEKFMVREFDKNMVLSEEMIAERDRAAEKESAME--------------- 275 (383)
T ss_pred HHhhhcCccceEEEEEEEEecChHHHHHHHHhcCcchhhcchhhhhHHHHHHHHhhHHHHHHHHH---------------
Confidence 99999999999999999999999999999999999999999999999999999999999888886
Q ss_pred hhhhhhhccccccCCCccchHHHHHHHHHHHHhhHHHHHHhHHHhhhhHHhHhhhhhhccCCcccccccccccccccccc
Q psy6086 317 GNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILD 396 (585)
Q Consensus 317 ~~yi~~f~Wd~~ky~~~~~l~~~v~~i~~~v~~l~~~lk~~~~~Y~~~k~~~~~~~rk~~GnL~~~~L~~iv~~e~~~~d 396 (585)
T Consensus 276 -------------------------------------------------------------------------------- 275 (383)
T COG5127 276 -------------------------------------------------------------------------------- 275 (383)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEEeeCcchhHHHHhhhhhccccccCccccccccCcceeeeeeehhhhhHHHHHHHHhhhhccccccCCCccc
Q psy6086 397 SEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILPHSFG 476 (585)
Q Consensus 397 te~L~t~~V~Vpk~~~~df~~sye~l~~~VVP~S~~~i~~D~~~~Ly~V~ifk~~~~~f~~~~re~~~~~r~f~~~~~~~ 476 (585)
.
T Consensus 276 -------------------------------------------------------------------------------~ 276 (383)
T COG5127 276 -------------------------------------------------------------------------------K 276 (383)
T ss_pred -------------------------------------------------------------------------------H
Confidence 8
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchhHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q psy6086 477 PLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRLRDVLQQLYGHLDSSAQGGSQHHDSVE 556 (585)
Q Consensus 477 ~L~r~~~~~fse~f~awiHlKalRvFVESVLRYGLP~~f~a~~i~p~~k~~kkl~~~L~~~~~~l~~~~~~~~~~~~~~~ 556 (585)
-|+|+.++||+|.|+.|||||+|||||||||||||||+|..++++|.+|++-|+..+|.+.|+.|.++.....+..+.+
T Consensus 277 ~L~r~a~va~~evF~~wiHiK~LrvyVESvlRYGLPp~f~~~I~~~~~KsesKvk~~li~~~~~l~~n~i~~~k~g~~n- 355 (383)
T COG5127 277 ILMRFAHVALTEVFRIWIHIKLLRVYVESVLRYGLPPEFMFFITRGEKKSESKVKAQLIAIAKNLPSNRIVYEKEGDNN- 355 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeccCccchHHHHHHHHHHHhhcCCCcchhccccCCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999998877633222222
Q ss_pred CCCC------CC-CCCcccceEEEEEe
Q psy6086 557 IPGL------GF-GQADYFPYVYYKIN 576 (585)
Q Consensus 557 ~~~~------~~-~~~~~~pyV~~~i~ 576 (585)
.+|. .+ .|.||.|||+|-||
T Consensus 356 ~~~~~l~~~a~l~~d~EyePFVlfvfN 382 (383)
T COG5127 356 DEGEILFAFAELSTDGEYEPFVLFVFN 382 (383)
T ss_pred ccchHHHHHHhccccccccceEEEEec
Confidence 1221 13 58899999999776
No 4
>PF03223 V-ATPase_C: V-ATPase subunit C; InterPro: IPR004907 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C subunit that is part of the V1 complex, and is localised to the interface between the V1 and V0 complexes []. This subunit does not show any homology with F-ATPase subunits. The C subunit plays an essential role in controlling the assembly of V-ATPase, acting as a flexible stator that holds together the catalytic (V1) and membrane (V0) sectors of the enzyme []. The release of subunit C from the ATPase complex results in the dissociation of the V1 and V0 subcomplexes, which is an important mechanism in controlling V-ATPase activity in cells. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033180 proton-transporting V-type ATPase, V1 domain; PDB: 1U7L_A.
Probab=100.00 E-value=7.9e-48 Score=405.91 Aligned_cols=163 Identities=56% Similarity=0.952 Sum_probs=135.7
Q ss_pred CCCcchhhhhhhhhccccccCCCccchHHHHHHHHHHHHhhHHHHHHhHHHhhhhHHhHhhhhhhccCCccccccccccc
Q psy6086 310 FLSSDELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVK 389 (585)
Q Consensus 310 ~~~~~~~~~yi~~f~Wd~~ky~~~~~l~~~v~~i~~~v~~l~~~lk~~~~~Y~~~k~~~~~~~rk~~GnL~~~~L~~iv~ 389 (585)
..+..++++||++|+||++|||.++||+|+++.|++++.+||+|+|.|+++||++|.++++++||++|||++|||++||+
T Consensus 90 ~v~~~~~~~yl~~F~Wd~aKy~~~~~l~el~~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~~~RK~~GnL~~rsL~~iV~ 169 (371)
T PF03223_consen 90 LVNGVSLEQYLTRFQWDDAKYPTRRPLKELVDIISKEVSQIDNDLKSKSSAYNNAKSNLQALERKQTGNLSVRSLSDIVK 169 (371)
T ss_dssp -BTTB-HHHHHHT----TTTS-TTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-S-TTTS--TTT--
T ss_pred EECCCcHHHHHHHheehhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccHHhhCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceEEEEEEeeCcchhHHHHhhhhhccccccCccccccccCcceeeeeeehhhhhHHHHHHHHhhhhccccc
Q psy6086 390 KEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSF 469 (585)
Q Consensus 390 ~e~~~~dte~L~t~~V~Vpk~~~~df~~sye~l~~~VVP~S~~~i~~D~~~~Ly~V~ifk~~~~~f~~~~re~~~~~r~f 469 (585)
+||+|+|||||+|+||||||++++||+++||+|++||||||+++|.+|+||+||+||+||+.+++|+++|||+||++|+|
T Consensus 170 ~ed~v~dSEyL~Tl~VvVPk~~~~ewl~~YEtL~~~VVPrSs~~i~eD~ey~L~~VtlFkk~~~eF~~~~re~kf~vRdF 249 (371)
T PF03223_consen 170 PEDFVLDSEYLTTLLVVVPKNSVKEWLKSYETLTDMVVPRSSKKIAEDSEYVLFSVTLFKKVVDEFKNKCREKKFIVRDF 249 (371)
T ss_dssp GGGS--S-SSEEEEEEEEEGGGHHHHHHHGGGSSTTB-TT--EEEEE-SSEEEEEEEEEGGGHHHHHHHHHHTT-EEE--
T ss_pred HHhcccccccceEEEEEechhhHHHHHHHHhccCCccCCChHHhhhcCCCeEEEEEEEEeccHHHHHHHHHHcCCeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy6086 470 ILP 472 (585)
Q Consensus 470 ~~~ 472 (585)
.++
T Consensus 250 ~y~ 252 (371)
T PF03223_consen 250 KYD 252 (371)
T ss_dssp ---
T ss_pred ccC
Confidence 996
No 5
>KOG2909|consensus
Probab=100.00 E-value=1.2e-46 Score=385.92 Aligned_cols=197 Identities=50% Similarity=0.809 Sum_probs=175.0
Q ss_pred cCCCCCCCcchhhhhhhhhccccccCCCccchHHHHHHHHHHHHhhHHHHHHhHHHhhhhHHhHhhhhhhccCCcccccc
Q psy6086 305 TNSLPFLSSDELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNL 384 (585)
Q Consensus 305 t~s~~~~~~~~~~~yi~~f~Wd~~ky~~~~~l~~~v~~i~~~v~~l~~~lk~~~~~Y~~~k~~~~~~~rk~~GnL~~~~L 384 (585)
.+.+.+ +..++.+|+++|+||++|||..+||++++..|++++++||.|+|.++++||+||.++++++||++|||++|||
T Consensus 89 ~~~l~~-n~~~~~ey~t~F~Wd~akf~~~~si~~iid~I~~e~~qie~Dlk~r~a~yn~ak~nl~nlerK~~GsL~~rsL 167 (381)
T KOG2909|consen 89 GENLMA-NGVPLPEYLTRFQWDMAKFPTNQSIKEIIDLISKEIAQIENDLKTRAAAYNNAKGNLQNLERKKTGSLSTRSL 167 (381)
T ss_pred hhceee-CCcCHHHHHhHheehhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhccCChhhhhH
Confidence 344455 4488999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccceEEEEEEeeCcchhHHHHhhhhhccccccCccccccccCcceeeeeeehhhhhHHHHHHHHhhhh
Q psy6086 385 ADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKY 464 (585)
Q Consensus 385 ~~iv~~e~~~~dte~L~t~~V~Vpk~~~~df~~sye~l~~~VVP~S~~~i~~D~~~~Ly~V~ifk~~~~~f~~~~re~~~ 464 (585)
++||++||||++||||+|++|||||+.++||+++|||++++|||||+++|.+|+||.||+||+||+.+++|+++|||+||
T Consensus 168 ~~IVk~edfvl~SEyL~tllVvVPK~~~~df~~~YEtlsd~VvPrSskki~eD~Ey~Lf~V~lFkk~~edFr~~ArE~kF 247 (381)
T KOG2909|consen 168 ADIVKKEDFVLDSEYLTTLLVVVPKALVKDFLKSYETLSDMVVPRSSKKINEDAEYVLFTVTLFKKVAEDFRTKAREKKF 247 (381)
T ss_pred HHhCCchhhccchhhheeEEEEeeccchHHHHHHHHhhccccchhhhhhcccccceEEEEEEEeehhHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCC-----CccchHHHHHHhhhh---HHHHHHHHHHHHHHHH
Q psy6086 465 ALNSFILP-----HSFGPLVRWLKVNFS---ECFCAWIHVKALRVFV 503 (585)
Q Consensus 465 ~~r~f~~~-----~~~~~L~r~~~~~fs---e~f~awiHlKalRvFV 503 (585)
++|+|.+. +.++.+-|.. .-+. -...-|+|+-.--+|+
T Consensus 248 ~vRdF~y~ee~~e~~k~E~~ra~-~~~k~~~~~Llr~~kv~fsEvF~ 293 (381)
T KOG2909|consen 248 IVRDFDYNEEEIETEKAEMDRAA-TDKKSMRGPLLRWLKVNFSEVFI 293 (381)
T ss_pred ceeeccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999984 2333333332 1122 2334688887555554
No 6
>COG5127 Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion]
Probab=100.00 E-value=1.8e-36 Score=307.02 Aligned_cols=164 Identities=27% Similarity=0.509 Sum_probs=158.6
Q ss_pred CCCCcchhhhhhhhhccccccCCCccchHHHHHHHHHHHHhhHHHHHHhHHHhhhhHHhHhhhhhhccCCcccccccccc
Q psy6086 309 PFLSSDELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLV 388 (585)
Q Consensus 309 ~~~~~~~~~~yi~~f~Wd~~ky~~~~~l~~~v~~i~~~v~~l~~~lk~~~~~Y~~~k~~~~~~~rk~~GnL~~~~L~~iv 388 (585)
.++.-.+.-+|+.+|+||+++|..+++|++++..|..+..+++.|.+.++.+|+.||.++++++||++|||++|||++||
T Consensus 90 ~~iv~~~~pEy~~~f~W~~~~F~~nKsI~~~i~li~~E~~~~~~d~r~~~~~f~~Ak~~~~~~qrk~~G~Ls~~sL~~IV 169 (383)
T COG5127 90 KGIVYGSTPEYGDFFEWDRQSFVTNKSIEKAILLIDGEYRRISKDYREKAEEFDGAKRECEKLQRKTRGSLSDISLGIIV 169 (383)
T ss_pred cccccCCchhhhhhhhcchhheeccccHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccCChhhhhHhhhc
Confidence 34455566699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccceEEEEEEeeCcchhHHHHhhhhhccccccCccccccccCcceeeeeeehhhhhHHHHHHHHhhhhcccc
Q psy6086 389 KKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNS 468 (585)
Q Consensus 389 ~~e~~~~dte~L~t~~V~Vpk~~~~df~~sye~l~~~VVP~S~~~i~~D~~~~Ly~V~ifk~~~~~f~~~~re~~~~~r~ 468 (585)
.+||++..||||+++||||||+.+++|+++|||++++|+|+|+++|.+|++|+||+|++||+.+++|+++|||.||.+|+
T Consensus 170 ~~eDvv~gse~Lt~v~vaVpk~l~~~F~~syeTls~~V~p~sa~kv~~D~EyvLf~V~vfkk~~~~f~t~are~kf~vre 249 (383)
T COG5127 170 EREDVVEGSEFLTVVYVAVPKALVPEFNRSYETLSPHVSPDSAEKVNSDEEYVLFKVYVFKKGEEDFRTMAREEKFMVRE 249 (383)
T ss_pred CchhhccchhhheeeEEEehhhhhHHHHhhhhhcCcccChhHHhhhcCccceEEEEEEEEecChHHHHHHHHhcCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q psy6086 469 FILP 472 (585)
Q Consensus 469 f~~~ 472 (585)
|.+.
T Consensus 250 f~~~ 253 (383)
T COG5127 250 FDKN 253 (383)
T ss_pred cchh
Confidence 9874
No 7
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=96.47 E-value=0.42 Score=55.04 Aligned_cols=265 Identities=14% Similarity=0.186 Sum_probs=145.8
Q ss_pred eEEEEEecccHHHHHHHHHHCCC-eeeecccCHH--HHHhchHHHHHHHHHHhhhcCcccCCCCCCCcchhhhhhhhhcc
Q psy6086 249 LYTVTLFKKVQDEFRHHAREKKF-IVREFVYNEE--ELAAGKNEITKLVTDKKKQFGYATNSLPFLSSDELGNYITQFQW 325 (585)
Q Consensus 249 Ly~VtlFKk~~deF~~~aRekkf-iVRdF~ydee--~~~~~~~e~~~l~~~~k~~~~~~t~s~~~~~~~~~~~yi~~f~W 325 (585)
-+++..+|+..|++.+++++-|. +++|..-..+ +..+..+..+++..-..... +|.....=
T Consensus 8 kv~l~~~~~~~~~~l~~L~~lg~vhi~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~----------------~~~~~~~~ 71 (646)
T PRK05771 8 KVLIVTLKSYKDEVLEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLR----------------SYLPKLNP 71 (646)
T ss_pred EEEEEEEHHHHHHHHHHHHhCCCEEEeecccccchhHHhHHHHHHHHHHHHHHHHH----------------Hhcccccc
Confidence 47889999999999999999975 7887754432 11222222222222222111 11111000
Q ss_pred ccccC--CCccchHHHHHHHHHHHHhhHHHHHHhHHHhhhhHHhHhhhhhhccCCccccccccccccccccccccceEEE
Q psy6086 326 DMAKY--PIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTL 403 (585)
Q Consensus 326 d~~ky--~~~~~l~~~v~~i~~~v~~l~~~lk~~~~~Y~~~k~~~~~~~rk~~GnL~~~~L~~iv~~e~~~~dte~L~t~ 403 (585)
..... .+..+.+++.+....+...+++++....+..++++.+.+.++.+..-=--..+|+.=+. ...++.++...
T Consensus 72 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~~~ld~~l~---~~~~~~~~~~~ 148 (646)
T PRK05771 72 LREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLS---LLLGFKYVSVF 148 (646)
T ss_pred chhhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCHH---HhCCCCcEEEE
Confidence 00000 01234556666666666666666666666666666666666544331111111211111 12356788888
Q ss_pred EEEeeCcchhHHHHhhhhhccccccCccccccccCcceeeeeeehhhhhHHHHHHHHhhhhccccccC------------
Q psy6086 404 LVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFIL------------ 471 (585)
Q Consensus 404 ~V~Vpk~~~~df~~sye~l~~~VVP~S~~~i~~D~~~~Ly~V~ifk~~~~~f~~~~re~~~~~r~f~~------------ 471 (585)
+-.||+...+.. .++. -+.-...+.++++++-+-|..-+...++....|++.+|..-+.-.
T Consensus 149 ~G~i~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~l~~~~f~~~~~p~~~~p~~~l~~l~ 221 (646)
T PRK05771 149 VGTVPEDKLEEL--KLES-----DVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIK 221 (646)
T ss_pred EEEecchhhhhH--Hhhc-----cCceEEEEEecCCcEEEEEEEEhhhHHHHHHHHHHCCCEEecCCCCCCHHHHHHHHH
Confidence 899998776541 1111 112235567888888777777788889999999998887644311
Q ss_pred ----------CCccchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchhHHHHHHHHHhc
Q psy6086 472 ----------PHSFGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRLRDVLQQLYG 539 (585)
Q Consensus 472 ----------~~~~~~L~r~~~~~fse~f~awiHlKalRvFVESVLRYGLP~~f~a~~i~p~~k~~kkl~~~L~~~~~ 539 (585)
...+..+.++.+..-..+...+-.+...+-..+..-+.+---++...--+...++.+++++.|.+..+
T Consensus 222 ~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~~~~~l~GWvP~~~~~~l~~~l~~~~~ 299 (646)
T PRK05771 222 EELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTDKTFAIEGWVPEDRVKKLKELIDKATG 299 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEeehhHHHHHHHHHHHhcC
Confidence 13334444444333333333444455555555554544443334343344467889999999998775
No 8
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=94.79 E-value=4 Score=47.14 Aligned_cols=126 Identities=17% Similarity=0.345 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccCcccCCCCCccccCCcceEEEEEecCCChH
Q psy6086 141 QSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVT 220 (585)
Q Consensus 141 ~~L~elv~~i~k~v~~id~dlK~k~s~Yn~~K~~L~~~~RK~~GnL~~rsL~dvV~~edfV~dSEyLtTllVvVPk~~~k 220 (585)
.+..++.+.....+.+++++++...+..++++++++.++.... ..+.+.++=-+-....+++|+...+-.||+...+
T Consensus 82 ~~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~---~l~~~~~ld~~l~~~~~~~~~~~~~G~i~~~~~~ 158 (646)
T PRK05771 82 KSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIE---RLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLE 158 (646)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhcCCCCHHHhCCCCcEEEEEEEecchhhh
Confidence 3555665566666667777766666666666666666554311 1122222211111123578888888999997776
Q ss_pred HHHHhhhhcCCccccCCccccccCCCceeEEEEEecccHHHHHHHHHHCCCeeeec
Q psy6086 221 EWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREF 276 (585)
Q Consensus 221 ewl~~YEtLt~~VVPRSs~~I~eD~e~~Ly~VtlFKk~~deF~~~aRekkfiVRdF 276 (585)
. ..++....++ ..+.++.++.-+-|..-+...++....|+..+|.--++
T Consensus 159 ~--~~~~~~~~~~-----~~~~~~~~~~~~vvv~~~~~~~~~~~~l~~~~f~~~~~ 207 (646)
T PRK05771 159 E--LKLESDVENV-----EYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLEL 207 (646)
T ss_pred h--HHhhccCceE-----EEEEecCCcEEEEEEEEhhhHHHHHHHHHHCCCEEecC
Confidence 5 1222211122 23556777776666666778899999999977765444
No 9
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=86.50 E-value=2.1 Score=50.29 Aligned_cols=144 Identities=13% Similarity=0.114 Sum_probs=73.6
Q ss_pred ccceEE--EEEEeeCcchhHHHHhhhhhccc--cccCc-cccccccCc-----ceeeeeeehhhhhHHHHHHHHhhhhcc
Q psy6086 397 SEYLTT--LLVVVPRNQVTEWVQNYEKLTAM--IVPRS-SQLVSQDQD-----FALYTVTLFKKVQDEFRHHAREKKYAL 466 (585)
Q Consensus 397 te~L~t--~~V~Vpk~~~~df~~sye~l~~~--VVP~S-~~~i~~D~~-----~~Ly~V~ifk~~~~~f~~~~re~~~~~ 466 (585)
++++.. ++=+||+.....|.+...+.+.. .+-.+ .+.+..|.+ ++..-+..-+...++....|++.||..
T Consensus 138 ~~~~~~~f~~G~I~~~~~~~f~~~l~r~~~~N~fi~~~~Ie~~~~d~~e~~~k~v~vv~~~~~~~~~kv~~il~~~~f~~ 217 (759)
T PF01496_consen 138 SKFLNLGFIAGVIPREKIESFERILWRATRGNIFIRFSEIEEILEDPKEEVEKEVFVVFFSGKELEEKVKKILRSFGFER 217 (759)
T ss_dssp --------------HHHHHHHHHHHHHHHTT-----S------EEEE-EE-SSSEEEEEEEEGGGHHHHHHHHHTTT--B
T ss_pred ccceeeeEEEEEEehhhHHHHHHHHHHhccCCeEEEEEeeecccccccceeeeeeEEEEEEchhhHHHHHHHhhccCcee
Confidence 444443 67789999999999988877654 22211 244555544 554444556788999999999999986
Q ss_pred ccccC-----------------------CCccchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCC-CceEEEEec
Q psy6086 467 NSFIL-----------------------PHSFGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPV-NFQAMLLHP 522 (585)
Q Consensus 467 r~f~~-----------------------~~~~~~L~r~~~~~fse~f~awiHlKalRvFVESVLRYGLP~-~f~a~~i~p 522 (585)
-++-. ......+.++.+.+..++...+..++..+--.+..-..+--. ++...--+.
T Consensus 218 ~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~GWv 297 (759)
T PF01496_consen 218 YDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLRKEKEIYEALNKFASTETNVFILEGWV 297 (759)
T ss_dssp ----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---SEEEEEEE
T ss_pred cCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccEEEEEEec
Confidence 54321 133345555555555555555555555554445555555555 566666666
Q ss_pred CCCchhHHHHHHHHHhcC
Q psy6086 523 NKKNTKRLRDVLQQLYGH 540 (585)
Q Consensus 523 ~~k~~kkl~~~L~~~~~~ 540 (585)
.++..+++++.|.+..+.
T Consensus 298 P~~~~~~l~~~l~~~~~~ 315 (759)
T PF01496_consen 298 PEKDVEELKKALEEATDG 315 (759)
T ss_dssp -TTTHHHHHHT--SS-EE
T ss_pred cHHHHHHHHHHHHhhccc
Confidence 678899999999887654
No 10
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=83.54 E-value=4.6 Score=47.59 Aligned_cols=94 Identities=20% Similarity=0.279 Sum_probs=41.7
Q ss_pred CCcceE--EEEEecCCChHHHHHhhhhcCCc-cccCCc--cccccCCC----ceeEEEEE-ecccHHHHHHHHHHCCCee
Q psy6086 204 SEYLTT--LLVVVPRNQVTEWVQNYEKLTAM-IVPRSS--QLVSQDQD----FALYTVTL-FKKVQDEFRHHAREKKFIV 273 (585)
Q Consensus 204 SEyLtT--llVvVPk~~~kewl~~YEtLt~~-VVPRSs--~~I~eD~e----~~Ly~Vtl-FKk~~deF~~~aRekkfiV 273 (585)
++++.. ++=+||+.....|.+..++.+.- +.-+.+ ..+..|.. -..|-|.+ =++..++....|+..+|..
T Consensus 138 ~~~~~~~f~~G~I~~~~~~~f~~~l~r~~~~N~fi~~~~Ie~~~~d~~e~~~k~v~vv~~~~~~~~~kv~~il~~~~f~~ 217 (759)
T PF01496_consen 138 SKFLNLGFIAGVIPREKIESFERILWRATRGNIFIRFSEIEEILEDPKEEVEKEVFVVFFSGKELEEKVKKILRSFGFER 217 (759)
T ss_dssp --------------HHHHHHHHHHHHHHHTT-----S------EEEE-EE-SSSEEEEEEEEGGGHHHHHHHHHTTT--B
T ss_pred ccceeeeEEEEEEehhhHHHHHHHHHHhccCCeEEEEEeeecccccccceeeeeeEEEEEEchhhHHHHHHHhhccCcee
Confidence 444443 57789999999999998887654 221111 12233332 33443333 3678999999999999977
Q ss_pred eecccCH----HHHHhchHHHHHHHHHH
Q psy6086 274 REFVYNE----EELAAGKNEITKLVTDK 297 (585)
Q Consensus 274 RdF~yde----e~~~~~~~e~~~l~~~~ 297 (585)
=++.-++ +.+++.++++++++++.
T Consensus 218 ~~~p~~~~~p~e~~~~l~~~i~~l~~~~ 245 (759)
T PF01496_consen 218 YDLPEDEGTPEEAIKELEEEIEELEKEL 245 (759)
T ss_dssp ----GGGGG-HHHHHHHHHHHHHHHHHH
T ss_pred cCCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 6653322 33334444444444433
No 11
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=47.92 E-value=6.3 Score=34.86 Aligned_cols=11 Identities=64% Similarity=1.225 Sum_probs=9.8
Q ss_pred HHHHHHHhcCC
Q psy6086 501 VFVESVLRYGL 511 (585)
Q Consensus 501 vFVESVLRYGL 511 (585)
.|.|.||||||
T Consensus 16 t~~e~llRYGL 26 (85)
T PF06783_consen 16 TFFENLLRYGL 26 (85)
T ss_pred hHHHHHHHHHH
Confidence 48899999997
No 12
>COG5625 Predicted transcription regulator containing HTH domain [Transcription]
Probab=26.59 E-value=62 Score=29.86 Aligned_cols=37 Identities=30% Similarity=0.471 Sum_probs=30.5
Q ss_pred hccccccC---CCccchHHHHHHHHHHHHhhHHHHHHhHH
Q psy6086 323 FQWDMAKY---PIKQSLRNIADIINKQIGQIEADLKTKSS 359 (585)
Q Consensus 323 f~Wd~~ky---~~~~~l~~~v~~i~~~v~~l~~~lk~~~~ 359 (585)
=-|-...| |+-+||+++-+.|.+++..||.++|.-++
T Consensus 73 kgWvGYiya~~~P~k~leei~~~i~keiEelEk~~k~es~ 112 (113)
T COG5625 73 KGWVGYIYATTPPPKPLEEIEEEIMKEIEELEKEFKNESQ 112 (113)
T ss_pred ccceeeEecCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34777777 44688999999999999999999997654
No 13
>KOG4451|consensus
Probab=24.08 E-value=2.7e+02 Score=29.23 Aligned_cols=92 Identities=27% Similarity=0.433 Sum_probs=63.5
Q ss_pred cHHHHHHHHHHCCCeeeecccCHHHHHhchHHHHHHHHHHhhhcCcccCCCCCCCcchhhhhhhhhccccccCCCccchH
Q psy6086 258 VQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQFGYATNSLPFLSSDELGNYITQFQWDMAKYPIKQSLR 337 (585)
Q Consensus 258 ~~deF~~~aRekkfiVRdF~ydee~~~~~~~e~~~l~~~~k~~~~~~t~s~~~~~~~~~~~yi~~f~Wd~~ky~~~~~l~ 337 (585)
..+.|+..|| |.+.-|.+.|+-.++-+.|..-+-.++-.. ++
T Consensus 30 ~~ek~k~r~~---~ei~a~~~ee~~leey~~em~~lL~ekm~H-----------------------------------ve 71 (286)
T KOG4451|consen 30 FFEKFKERCR---FEICAFTWEEENLEEYELEMGVLLLEKMGH-----------------------------------VE 71 (286)
T ss_pred HHHHHHHHHH---HHHhhcchHHHHHHHHHHHHHHHHHHHHhh-----------------------------------HH
Confidence 3677888876 678889999988888888887766533221 22
Q ss_pred HHHHHHHHHHHhhHHHHHH--------------hHHHhhhhHHhHhhhhhhccCCccccccccccccc
Q psy6086 338 NIADIINKQIGQIEADLKT--------------KSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKE 391 (585)
Q Consensus 338 ~~v~~i~~~v~~l~~~lk~--------------~~~~Y~~~k~~~~~~~rk~~GnL~~~~L~~iv~~e 391 (585)
=+..|..+++-+|.+.|+ +.-.|-+.|...+.++|..-|==. |-|+.++|
T Consensus 72 -elr~iHadiN~men~ikq~k~~~~~~~~~~~r~~eey~~lk~h~d~lR~~~lgl~~---L~Dl~eee 135 (286)
T KOG4451|consen 72 -ELREIHADINEMENDIKQVKALEQHITSCNGRKGEEYMELKSHADELRQINLGLNT---LEDLTEEE 135 (286)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhcCccc---hhhHhhhh
Confidence 235567777777776664 455788999999999988777543 44455544
No 14
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.17 E-value=2.6e+02 Score=27.33 Aligned_cols=39 Identities=18% Similarity=0.396 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHhhHHHHHHhHHHhhhhHHhHhhhhhh
Q psy6086 336 LRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKK 374 (585)
Q Consensus 336 l~~~v~~i~~~v~~l~~~lk~~~~~Y~~~k~~~~~~~rk 374 (585)
.++-.+...+++.++.++++.+..++..+|+|.+++++.
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445567788999999999999999999999999988763
No 15
>COG4996 Predicted phosphatase [General function prediction only]
Probab=22.10 E-value=2.1e+02 Score=27.95 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=51.3
Q ss_pred hhhhhHHHHHHHHhhhhccccccCCCccchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEecCCCch
Q psy6086 448 FKKVQDEFRHHAREKKYALNSFILPHSFGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNT 527 (585)
Q Consensus 448 fk~~~~~f~~~~re~~~~~r~f~~~~~~~~L~r~~~~~fse~f~awiHlKalRvFVESVLRYGLP~~f~a~~i~p~~k~~ 527 (585)
+.+.+.++.+-+|..|+++..+.+- |. + .-+||||++ |+-.=|-..++.|++-|.
T Consensus 42 L~~~v~~~l~warnsG~i~~~~sWN-------------~~--~---kA~~aLral-------~~~~yFhy~ViePhP~K~ 96 (164)
T COG4996 42 LFPDVKETLKWARNSGYILGLASWN-------------FE--D---KAIKALRAL-------DLLQYFHYIVIEPHPYKF 96 (164)
T ss_pred EcHHHHHHHHHHHhCCcEEEEeecC-------------ch--H---HHHHHHHHh-------chhhhEEEEEecCCChhH
Confidence 4456788999999999999877653 11 1 235888886 777779999999999888
Q ss_pred hHHHHHHHHHhcC
Q psy6086 528 KRLRDVLQQLYGH 540 (585)
Q Consensus 528 kkl~~~L~~~~~~ 540 (585)
.-|-+.|..+=..
T Consensus 97 ~ML~~llr~i~~e 109 (164)
T COG4996 97 LMLSQLLREINTE 109 (164)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766543
No 16
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=21.96 E-value=4.6e+02 Score=27.34 Aligned_cols=38 Identities=13% Similarity=0.357 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy6086 148 DIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGS 185 (585)
Q Consensus 148 ~~i~k~v~~id~dlK~k~s~Yn~~K~~L~~~~RK~~Gn 185 (585)
.-|+.....-..++|.|..++....+.|..+.||..|+
T Consensus 108 kyi~a~~Kkyq~E~k~k~dsLeK~~seLKK~RRKsqg~ 145 (226)
T cd07645 108 KYMTATLKRYQTEHKNKLDSLEKSQADLKKIRRKSQGR 145 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 34555566677889999999999999999999998884
No 17
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=21.94 E-value=5e+02 Score=22.16 Aligned_cols=62 Identities=21% Similarity=0.310 Sum_probs=49.1
Q ss_pred HHHHHhchHHHHHHHHHHhhhcCcccCCCCCCCcchhhhhhhhhccccccCCCccchHHHHHHHHHHHHhhHHHHHHhHH
Q psy6086 280 EEELAAGKNEITKLVTDKKKQFGYATNSLPFLSSDELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSS 359 (585)
Q Consensus 280 ee~~~~~~~e~~~l~~~~k~~~~~~t~s~~~~~~~~~~~yi~~f~Wd~~ky~~~~~l~~~v~~i~~~v~~l~~~lk~~~~ 359 (585)
.+.+++.+.|-.+|...+-++ ..+++-+...+..+|..+.....
T Consensus 11 De~Ia~L~eEGekLSk~el~~------------------------------------~~~IKKLr~~~~e~e~~~~~l~~ 54 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKL------------------------------------NNTIKKLRAKIKELEKQIKELKK 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhh------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888877755444 58889999999999999999888
Q ss_pred HhhhhHHhHhhhhhhccC
Q psy6086 360 AYNNLKSNLQNMEKKQTG 377 (585)
Q Consensus 360 ~Y~~~k~~~~~~~rk~~G 377 (585)
.-+.+...++.++.+-.+
T Consensus 55 ~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 55 KLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 888888888888876543
Done!