Query psy6086
Match_columns 585
No_of_seqs 128 out of 244
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 17:15:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u7l_A Vacuolar ATP synthase s 100.0 3E-122 1E-126 972.2 36.3 374 2-577 9-392 (392)
2 1u7l_A Vacuolar ATP synthase s 100.0 8.3E-49 2.9E-53 413.7 16.4 162 311-472 102-263 (392)
3 3rrk_A V-type ATPase 116 kDa s 95.5 1.1 3.9E-05 45.7 20.3 259 246-536 13-307 (357)
4 3rrk_A V-type ATPase 116 kDa s 91.6 11 0.00039 38.2 19.0 134 145-299 99-244 (357)
5 1ng7_A Poliovirus 3A-N, genome 33.5 15 0.00052 29.4 1.4 22 447-468 25-47 (60)
6 2a2f_X Exocyst complex compone 26.3 24 0.00083 36.4 1.8 106 86-194 13-124 (325)
7 3htk_A Structural maintenance 21.9 1.5E+02 0.005 22.6 5.1 37 335-371 2-38 (60)
8 2p22_C Protein SRN2; endosome, 18.0 59 0.002 31.2 2.5 24 34-57 25-49 (192)
9 2zqm_A Prefoldin beta subunit 16.8 2.5E+02 0.0084 23.6 6.0 41 140-180 65-112 (117)
10 3okq_A BUD site selection prot 16.4 5E+02 0.017 23.9 8.1 68 83-174 16-83 (141)
No 1
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1
Probab=100.00 E-value=3e-122 Score=972.24 Aligned_cols=374 Identities=33% Similarity=0.562 Sum_probs=343.0
Q ss_pred ccEEEEeeCCCCChH----HHHHH-HhhhhccCCCCCccccccCCCCCCcChhhhhhcccccCCCCcccccccccccccc
Q psy6086 2 SEYWLISAPGDKTCQ----QTWEN-LNNVTSKQNNLSENYKFHIPDLKVGTLDQLVGLSDDLGKLDTFVDSVTVGTLDQL 76 (585)
Q Consensus 2 ~~ywLvS~P~~~~~~----~~~~~-L~~~~~~~~~~s~~~~f~iP~lKvGTLDsLv~lSDd~~~~~~~~~~~~~~~~~~~ 76 (585)
++|||||+|.++++. ++|+. |+..+++ +.+.+++|+||+|||||||+||+||||
T Consensus 9 ~~y~LvSlP~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~f~IP~lkvGTLDsLv~lsDd------------------- 67 (392)
T 1u7l_A 9 NDFILISLPQNAQPVTAPGSKTDSWFNETLIG--GRAFVSDFKIPEFKIGSLDTLIVESEE------------------- 67 (392)
T ss_dssp CEEEEEEEETTCCCTTSTTCCHHHHHHHTGGG--GTSEEEECCCCCCBCSCGGGHHHHHHH-------------------
T ss_pred CceEEEEccCCCCCCccHHHHHHHHHHhhccC--CCCccccccCCCCCccCHHHHHHHHHH-------------------
Confidence 579999999876555 89998 8876663 367889999999999999999999999
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHhhhhhhHHHhhhhhhcCCcCHHhhhhhcccccccCCCCCCHHHHHHHHHHHHHH
Q psy6086 77 VGLSDDLGKLDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMANNNELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQ 156 (585)
Q Consensus 77 ~~~~~~L~K~D~~ve~v~~Ki~~~~~~v~e~~~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKYp~~~~L~elv~~i~k~v~~ 156 (585)
|+|+|++||++++||+++++++++++++++.+++ +||+|+++||++|+||+||||.++||+||+++|++++++
T Consensus 68 ------L~Kld~~ve~v~~Ki~~~~~~~~~~~~~~~~~~l-vn~~~~~~yl~~F~Wd~aKyp~~~~L~elv~~i~~~v~~ 140 (392)
T 1u7l_A 68 ------LSKVDNQIGASIGKIIEILQGLNETSTNAYRTLP-INNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQ 140 (392)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCSCC-BTTBCHHHHHHTCCCCTTTSCTTSBHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHh-cCCCCHHHHHhhceeccccCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888888888 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccccccCcccCCCCCccccCCcceEEEEEecCCChHHHHHhhhhcCCccccC
Q psy6086 157 IEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPR 236 (585)
Q Consensus 157 id~dlK~k~s~Yn~~K~~L~~~~RK~~GnL~~rsL~dvV~~edfV~dSEyLtTllVvVPk~~~kewl~~YEtLt~~VVPR 236 (585)
||+|+|+|+++||++|++|++++||++|||++|||++||+|||||+|||||||++|||||++++||+++||||++|||||
T Consensus 141 id~dlk~k~~~Yn~~K~~l~~~~RK~~GnL~~rsL~~iV~~edfv~dSEyL~TllVvVPk~~~~dwl~~YEtL~~~VVPr 220 (392)
T 1u7l_A 141 LDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPA 220 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTTSCCTTTCCGGGSCCSCSSEEEEEEEEEGGGHHHHHHHGGGSSTTBCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCceeeeeHHHhcCHHHccCccccceEEEEEEeCccHHHHHHHHhhcCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCceeEEEEEecccHHHHHHHHHHCCCeeeecccCHHHHHhchHHHHHHHHHHhhhcCcccCCCCCCCcchh
Q psy6086 237 SSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQFGYATNSLPFLSSDEL 316 (585)
Q Consensus 237 Ss~~I~eD~e~~Ly~VtlFKk~~deF~~~aRekkfiVRdF~ydee~~~~~~~e~~~l~~~~k~~~~~~t~s~~~~~~~~~ 316 (585)
||++|++|+||+||+||||||+++||+++|||+||+||||+|||+.+++.++|+++++++++++|
T Consensus 221 Ss~~i~~D~ey~L~~VtlFkk~~~eF~~~~Re~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~--------------- 285 (392)
T 1u7l_A 221 SASVIAEDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLR--------------- 285 (392)
T ss_dssp CCEEEEECSSEEEEEEEEEGGGHHHHHHHHHHTTCEEECCCCCHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred hhhhhhcCCCceEEEEEEEhhhHHHHHHHHHHcCCccccCcCCHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccCCCccchHHHHHHHHHHHHhhHHHHHHhHHHhhhhHHhHhhhhhhccCCcccccccccccccccccc
Q psy6086 317 GNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILD 396 (585)
Q Consensus 317 ~~yi~~f~Wd~~ky~~~~~l~~~v~~i~~~v~~l~~~lk~~~~~Y~~~k~~~~~~~rk~~GnL~~~~L~~iv~~e~~~~d 396 (585)
T Consensus 286 -------------------------------------------------------------------------------- 285 (392)
T 1u7l_A 286 -------------------------------------------------------------------------------- 285 (392)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEEeeCcchhHHHHhhhhhccccccCccccccccCcceeeeeeehhhhhHHHHHHHHhhhhccccccCCCccc
Q psy6086 397 SEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILPHSFG 476 (585)
Q Consensus 397 te~L~t~~V~Vpk~~~~df~~sye~l~~~VVP~S~~~i~~D~~~~Ly~V~ifk~~~~~f~~~~re~~~~~r~f~~~~~~~ 476 (585)
+
T Consensus 286 -------------------------------------------------------------------------------~ 286 (392)
T 1u7l_A 286 -------------------------------------------------------------------------------V 286 (392)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------H
Confidence 9
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchhHHHHHHHHHhcCCCCCCCCCCC-----C
Q psy6086 477 PLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRLRDVLQQLYGHLDSSAQGGSQ-----H 551 (585)
Q Consensus 477 ~L~r~~~~~fse~f~awiHlKalRvFVESVLRYGLP~~f~a~~i~p~~k~~kkl~~~L~~~~~~l~~~~~~~~~-----~ 551 (585)
.|+|||++||||+|++|||||||||||||||||||||+|++++++|++|+++|++++|.++||||++++.+.+. +
T Consensus 287 ~L~r~~~~~fse~f~awiHiKalRvFVESVLRYGLP~~F~a~li~p~~k~~kKlr~~L~~~f~~l~~~~~~~~~~~~~~~ 366 (392)
T 1u7l_A 287 QLVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPHFNIKIIAVPPKNLSKCKSELIDAFGFLGGNAFMKDKKGKINK 366 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEEECTTCHHHHHHHHHHHHGGGGCTTCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhcCCCCcceEEEEEeCCccHHHHHHHHHHHhcccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987665431 2
Q ss_pred CCCCCCCCCCCCCCcccceEEEEEee
Q psy6086 552 HDSVEIPGLGFGQADYFPYVYYKINI 577 (585)
Q Consensus 552 ~~~~~~~~~~~~~~~~~pyV~~~i~~ 577 (585)
+++...+|++++++||||||+|+|++
T Consensus 367 ~d~~~~~~~~~~~~ey~pyV~~~i~~ 392 (392)
T 1u7l_A 367 QDTSLHQYASLVDTEYEPFVMYIINL 392 (392)
T ss_dssp ---------------CCSSEEEEEEC
T ss_pred ccchhhccccCCCcccceeEEEEEeC
Confidence 33344557777899999999999975
No 2
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1
Probab=100.00 E-value=8.3e-49 Score=413.69 Aligned_cols=162 Identities=36% Similarity=0.681 Sum_probs=160.5
Q ss_pred CCcchhhhhhhhhccccccCCCccchHHHHHHHHHHHHhhHHHHHHhHHHhhhhHHhHhhhhhhccCCcccccccccccc
Q psy6086 311 LSSDELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKK 390 (585)
Q Consensus 311 ~~~~~~~~yi~~f~Wd~~ky~~~~~l~~~v~~i~~~v~~l~~~lk~~~~~Y~~~k~~~~~~~rk~~GnL~~~~L~~iv~~ 390 (585)
.+..++++||++|+||++|||.++||+||++.|++++.+||+|+|.|+++||++|.++++++||++|||++|||++||++
T Consensus 102 vn~~~~~~yl~~F~Wd~aKyp~~~~L~elv~~i~~~v~~id~dlk~k~~~Yn~~K~~l~~~~RK~~GnL~~rsL~~iV~~ 181 (392)
T 1u7l_A 102 INNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDIVKP 181 (392)
T ss_dssp BTTBCHHHHHHTCCCCTTTSCTTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTTSCCTTTCCG
T ss_pred cCCCCHHHHHhhceeccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeeeHHHhcCH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceEEEEEEeeCcchhHHHHhhhhhccccccCccccccccCcceeeeeeehhhhhHHHHHHHHhhhhcccccc
Q psy6086 391 EHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFI 470 (585)
Q Consensus 391 e~~~~dte~L~t~~V~Vpk~~~~df~~sye~l~~~VVP~S~~~i~~D~~~~Ly~V~ifk~~~~~f~~~~re~~~~~r~f~ 470 (585)
||||+|||||+|++|||||++++||+++||+|++||||||+++|.+|+||+||+||+||++.++|+++|||+||++|+|.
T Consensus 182 edfv~dSEyL~TllVvVPk~~~~dwl~~YEtL~~~VVPrSs~~i~~D~ey~L~~VtlFkk~~~eF~~~~Re~kf~vRdF~ 261 (392)
T 1u7l_A 182 EDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFN 261 (392)
T ss_dssp GGSCCSCSSEEEEEEEEEGGGHHHHHHHGGGSSTTBCTTCCEEEEECSSEEEEEEEEEGGGHHHHHHHHHHTTCEEECCC
T ss_pred HHccCccccceEEEEEEeCccHHHHHHHHhhcCCCccCChhhhhhcCCCceEEEEEEEhhhHHHHHHHHHHcCCccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q psy6086 471 LP 472 (585)
Q Consensus 471 ~~ 472 (585)
|+
T Consensus 262 y~ 263 (392)
T 1u7l_A 262 YS 263 (392)
T ss_dssp CC
T ss_pred CC
Confidence 96
No 3
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=95.55 E-value=1.1 Score=45.70 Aligned_cols=259 Identities=8% Similarity=-0.014 Sum_probs=149.7
Q ss_pred CceeEEEEEecccHHHHHHHHHHCCC-eeeecccCHHHHHhc----hHHHHHHHHHHhhhcCcccCCCCCCCcchhhhhh
Q psy6086 246 DFALYTVTLFKKVQDEFRHHAREKKF-IVREFVYNEEELAAG----KNEITKLVTDKKKQFGYATNSLPFLSSDELGNYI 320 (585)
Q Consensus 246 e~~Ly~VtlFKk~~deF~~~aRekkf-iVRdF~ydee~~~~~----~~e~~~l~~~~k~~~~~~t~s~~~~~~~~~~~yi 320 (585)
.=..++++++++..++......+.|. +++|..-+.+..+.. .++...+.....+.. .+.+++
T Consensus 13 kM~kv~l~~~~~~~~~vl~~L~~lg~vhi~d~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~-------------~~~~~L 79 (357)
T 3rrk_A 13 KMEKLIVAGPKRLARELLAELQKAGVVHIDPLRPDELGEYRLSPTEEAELKRWEAVVSQAE-------------QSLTVV 79 (357)
T ss_dssp -CEEEEEEECGGGHHHHHHHHHHHTCEEEEEECGGGGGGGCCCHHHHHHHHHHHHHHHHHH-------------HHHHHH
T ss_pred heEEEEEEeEHHHHHHHHHHHHHcCcEEEEeccccccccccCCccchHHHhHHHHHHHHHH-------------HHHHHh
Confidence 45788999999999999999999864 788875433221100 012222222222221 111222
Q ss_pred hhhcccc-ccCCC-ccchHHHHHHHHHHHHhhHHHHHHhHHHhhhhHHh---HhhhhhhccCCccccccccccccccccc
Q psy6086 321 TQFQWDM-AKYPI-KQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSN---LQNMEKKQTGSLLTRNLADLVKKEHFIL 395 (585)
Q Consensus 321 ~~f~Wd~-~ky~~-~~~l~~~v~~i~~~v~~l~~~lk~~~~~Y~~~k~~---~~~~~rk~~GnL~~~~L~~iv~~e~~~~ 395 (585)
..+.=.. ...+. ..-+++.+..|..++..+++.+......+..++.+ ++.+..-.. +|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~~------~ld---------- 143 (357)
T 3rrk_A 80 GLATVPSSKPFTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALAH------GLD---------- 143 (357)
T ss_dssp TCCCCCCSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------TTT----------
T ss_pred cccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhc------cCC----------
Confidence 2111000 00000 11244556677777777777777777777666666 555532210 221
Q ss_pred cccceEEEEEEe-eCcchhHHHHhhhhhccccccCccccccccCcceeeeeeehhhhhHHHHHHHHhhhhccccccC---
Q psy6086 396 DSEYLTTLLVVV-PRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFIL--- 471 (585)
Q Consensus 396 dte~L~t~~V~V-pk~~~~df~~sye~l~~~VVP~S~~~i~~D~~~~Ly~V~ifk~~~~~f~~~~re~~~~~r~f~~--- 471 (585)
-+-++--+...| |+.....|.+.....+.-++ ...+.++.+++.+-|..-+...++...+|+..||..=.+-.
T Consensus 144 ~~~~~g~~~g~ip~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~vv~~~~~~~~~v~~il~s~~f~~~~~p~~~~ 220 (357)
T 3rrk_A 144 ESPRLGVIPFLVAKPEELEAVRKALQEALADRF---VLEAEPLENQLAALVVVKRSELEAARSSLSRLGLAELRFPGAYG 220 (357)
T ss_dssp TCTTEEEEEEEESCHHHHHHHHHHHHHHHTTSC---EEEEEECSSSEEEEEEEEGGGHHHHHHHHHTTTCCBCCCCGGGG
T ss_pred ccceeeeeeEEecChhhHHHHHHHHHHhcCCeE---EEEeecCCCcEEEEEEEEHHHHHHHHHHHHHCCCeeccCCcccC
Confidence 134566666689 68888999887776533211 24557777877777777788899999999999998654321
Q ss_pred ----------------------CCccchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchhH
Q psy6086 472 ----------------------PHSFGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKR 529 (585)
Q Consensus 472 ----------------------~~~~~~L~r~~~~~fse~f~awiHlKalRvFVESVLRYGLP~~f~a~~i~p~~k~~kk 529 (585)
......|.++.+.+..++-..+-.+...+-.-+.....+---++...--|...+...+
T Consensus 221 ~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gWvp~~~~~~ 300 (357)
T 3rrk_A 221 AMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVADMAAGKYGAALMGWVPQKAKGK 300 (357)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEECTTTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcEEEEEEEeeHHHHHH
Confidence 1334556666665555555555555554444454444443334444445556777889
Q ss_pred HHHHHHH
Q psy6086 530 LRDVLQQ 536 (585)
Q Consensus 530 l~~~L~~ 536 (585)
+.+.|.+
T Consensus 301 ~~~~l~~ 307 (357)
T 3rrk_A 301 VEEALGR 307 (357)
T ss_dssp HHHTCCS
T ss_pred HHHHHHh
Confidence 9988887
No 4
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=91.62 E-value=11 Score=38.24 Aligned_cols=134 Identities=8% Similarity=-0.003 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhccc-ccccccCcccCCCCCccccCCcceEEEEEe-cCCCh
Q psy6086 145 NIADIINKQIGQIEADLKTKSSAYNNLKSN---LQNMEKKQTG-SLLTRNLADLVKKEHFILDSEYLTTLLVVV-PRNQV 219 (585)
Q Consensus 145 elv~~i~k~v~~id~dlK~k~s~Yn~~K~~---L~~~~RK~~G-nL~~rsL~dvV~~edfV~dSEyLtTllVvV-Pk~~~ 219 (585)
+.++.+..++..+++.+...-+....++.. +..+.-= + +|- -+-++--+...| |+...
T Consensus 99 ~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~--~~~ld---------------~~~~~g~~~g~ip~~~~~ 161 (357)
T 3rrk_A 99 AVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAAL--AHGLD---------------ESPRLGVIPFLVAKPEEL 161 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTTTT---------------TCTTEEEEEEEESCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh--hccCC---------------ccceeeeeeEEecChhhH
Confidence 334555555666666555555555555555 4444321 2 322 144566666789 68889
Q ss_pred HHHHHhhhhcCC-ccccCCccccccCCCceeEEEEEecccHHHHHHHHHHCCCeeeecc------cCHHHHHhchHHHHH
Q psy6086 220 TEWVQNYEKLTA-MIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFV------YNEEELAAGKNEITK 292 (585)
Q Consensus 220 kewl~~YEtLt~-~VVPRSs~~I~eD~e~~Ly~VtlFKk~~deF~~~aRekkfiVRdF~------ydee~~~~~~~e~~~ 292 (585)
..|....+..++ +++ ..+.+|.+++.+-|..-+...++....|+..+|..=++- --.+.+++.++++..
T Consensus 162 ~~~~~~l~~~~~~~~~----~~~~~~~~~~~~vv~~~~~~~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~ 237 (357)
T 3rrk_A 162 EAVRKALQEALADRFV----LEAEPLENQLAALVVVKRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARL 237 (357)
T ss_dssp HHHHHHHHHHHTTSCE----EEEEECSSSEEEEEEEEGGGHHHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEE----EEeecCCCcEEEEEEEEHHHHHHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHH
Confidence 999887776533 222 234566777666666667789999999999999766553 112334455555555
Q ss_pred HHHHHhh
Q psy6086 293 LVTDKKK 299 (585)
Q Consensus 293 l~~~~k~ 299 (585)
++++...
T Consensus 238 l~~~l~~ 244 (357)
T 3rrk_A 238 APEELVG 244 (357)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554433
No 5
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=33.46 E-value=15 Score=29.43 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=17.6
Q ss_pred ehhhhh-HHHHHHHHhhhhcccc
Q psy6086 447 LFKKVQ-DEFRHHAREKKYALNS 468 (585)
Q Consensus 447 ifk~~~-~~f~~~~re~~~~~r~ 468 (585)
++|++. .+.++.|+++||++-.
T Consensus 25 LLksvds~eV~~YC~~kGwIiP~ 47 (60)
T 1ng7_A 25 LLQAVDSQEVRDYCEKKGWIVNI 47 (60)
T ss_dssp HHHHHCCHHHHHHHHHHTCCCCC
T ss_pred HHHcCCCHHHHHHHHHCCceecc
Confidence 456665 7889999999999853
No 6
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=26.32 E-value=24 Score=36.38 Aligned_cols=106 Identities=16% Similarity=0.261 Sum_probs=66.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhHHHhhhhhhcCC-cCHHhhhhhccccc-----ccCCCCCCHHHHHHHHHHHHHHHHH
Q psy6086 86 LDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMANN-NELGNYITQFQWDM-----AKYPIKQSLRNIADIINKQIGQIEA 159 (585)
Q Consensus 86 ~D~~ve~v~~Ki~~~~~~v~e~~~~~~~~~l~v~~-~~~~~Yl~~F~Wd~-----aKYp~~~~L~elv~~i~k~v~~id~ 159 (585)
-|.+.+-++++.+..+.+++.++ ... .+.++. ...+..+..|.|.. ..||..-|-...+=.+...|.+.=+
T Consensus 13 ~d~Y~elLl~~~~~~f~~il~~D--~y~-Pm~V~~~eey~~v~~~~~~~~~~~~~~~fP~~lPFS~~vP~~c~~ir~fi~ 89 (325)
T 2a2f_X 13 RDHYNEVLLQRWVHVFREILDKE--QFL-PMVVQNTEEYECIIERFPFHSEQLENAPFPKKFPFSRMVPEVYHQAKEFMY 89 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--TTC-BCCCCCHHHHHHHHTTSCCCCCCCC----CCCSSSBTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CCC-eeeeCCHHHHHHHHhcCCCCCcccccCCCCcccCccHHHHHHHHHHHHHHH
Confidence 46889999999999999988654 333 344544 44777789999965 5688877777777666666665544
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccccccCccc
Q psy6086 160 DLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADL 194 (585)
Q Consensus 160 dlK~k~s~Yn~~K~~L~~~~RK~~GnL~~rsL~dv 194 (585)
+.=.=+..++.--+....+-||....|++|.+++.
T Consensus 90 ~~~~F~~~~~~~~~eidd~lrks~d~LL~~~v~~~ 124 (325)
T 2a2f_X 90 ACMKFAEELTLSPNEVAAMVRKAANLLLTRSFSGC 124 (325)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 44333333322334555566676777777655544
No 7
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=21.92 E-value=1.5e+02 Score=22.58 Aligned_cols=37 Identities=11% Similarity=0.310 Sum_probs=22.0
Q ss_pred chHHHHHHHHHHHHhhHHHHHHhHHHhhhhHHhHhhh
Q psy6086 335 SLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNM 371 (585)
Q Consensus 335 ~l~~~v~~i~~~v~~l~~~lk~~~~~Y~~~k~~~~~~ 371 (585)
|+.+-++.+...+..+.+.+.....+|..++.++..+
T Consensus 2 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 38 (60)
T 3htk_A 2 PFANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEI 38 (60)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666556666666665555555543
No 8
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=17.96 E-value=59 Score=31.25 Aligned_cols=24 Identities=8% Similarity=0.320 Sum_probs=20.2
Q ss_pred ccccccCC-CCCCcChhhhhhcccc
Q psy6086 34 ENYKFHIP-DLKVGTLDQLVGLSDD 57 (585)
Q Consensus 34 ~~~~f~iP-~lKvGTLDsLv~lSDd 57 (585)
++..|++| .|+--|.+.|-.+.++
T Consensus 25 ~~~~~~LP~~L~~LS~~eL~~LL~~ 49 (192)
T 2p22_C 25 KSKNIPLPEGINLLSSKEIIDLIQT 49 (192)
T ss_dssp -CCCCCCSSGGGSCTTHHHHHHHHH
T ss_pred cccCCCCCHHHHhCCHHHHHHHHhC
Confidence 45679999 6888899999999988
No 9
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=16.77 E-value=2.5e+02 Score=23.64 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhh
Q psy6086 140 KQSLRNIADIINKQIGQIEADLKTKS-------SAYNNLKSNLQNMEK 180 (585)
Q Consensus 140 ~~~L~elv~~i~k~v~~id~dlK~k~-------s~Yn~~K~~L~~~~R 180 (585)
.++..+....|.+....|+..++.-. ..+++++.+|.++..
T Consensus 65 ~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 65 KTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56777777777666666666665544 445555555555443
No 10
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=16.36 E-value=5e+02 Score=23.94 Aligned_cols=68 Identities=22% Similarity=0.288 Sum_probs=50.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhhhhHHHhhhhhhcCCcCHHhhhhhcccccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy6086 83 LGKLDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMANNNELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLK 162 (585)
Q Consensus 83 L~K~D~~ve~v~~Ki~~~~~~v~e~~~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKYp~~~~L~elv~~i~k~v~~id~dlK 162 (585)
=.|++.-.+.++.||.+ +.++.|+-+..+.. . .-+|.+.-++.+++++.....+|+
T Consensus 16 k~kL~~~sd~LvtkVDD-LQD~VE~LRkDV~~----R-------------------gvrP~~~ql~~v~kdi~~a~~eL~ 71 (141)
T 3okq_A 16 QTELGDLSDTLLSKVDD-LQDVIEIMRKDVAE----R-------------------RSQPAKKKLETVSKDLENAQADVL 71 (141)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----H-------------------CCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHH----c-------------------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35788888899999887 67777654444332 2 246888889999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy6086 163 TKSSAYNNLKSN 174 (585)
Q Consensus 163 ~k~s~Yn~~K~~ 174 (585)
......+..|-.
T Consensus 72 ~m~~~i~~ekP~ 83 (141)
T 3okq_A 72 KLQEFIDTEKPH 83 (141)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHcCch
Confidence 888777776643
Done!