Query psy6086
Match_columns 585
No_of_seqs 128 out of 244
Neff 4.6
Searched_HMMs 13730
Date Fri Aug 16 17:16:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6086.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6086hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7la_ e.57.1.1 (A:) Vacuolar 100.0 5E-119 4E-123 941.4 37.6 372 2-577 5-388 (388)
2 d1u7la_ e.57.1.1 (A:) Vacuolar 100.0 1.1E-48 8.3E-53 408.6 16.4 162 311-472 98-259 (388)
3 d1ng7a_ a.178.1.1 (A:) Soluble 66.1 2.5 0.00018 32.0 3.6 28 408-466 18-45 (60)
4 d1w1oa1 d.58.32.4 (A:246-534) 21.7 1.3E+02 0.0094 28.4 8.5 92 403-498 153-273 (289)
5 d1ng7a_ a.178.1.1 (A:) Soluble 20.6 16 0.0012 27.3 1.3 15 259-273 31-45 (60)
6 d2ivya1 d.58.58.1 (A:2-89) Hyp 16.3 43 0.0031 26.3 3.0 43 498-540 15-58 (88)
7 d1fxka_ a.2.5.1 (A:) Prefoldin 13.2 2.8E+02 0.02 21.4 8.1 42 333-374 60-101 (107)
8 d1bjta_ e.11.1.1 (A:) DNA topo 13.1 2.1E+02 0.016 30.0 8.5 23 279-301 707-729 (760)
9 d1seta1 a.2.7.1 (A:1-110) Sery 12.0 3E+02 0.022 21.1 8.2 40 255-299 7-46 (110)
10 d1fxka_ a.2.5.1 (A:) Prefoldin 11.5 1.6E+02 0.012 22.9 5.4 41 140-180 60-100 (107)
No 1
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=5.1e-119 Score=941.42 Aligned_cols=372 Identities=34% Similarity=0.583 Sum_probs=335.1
Q ss_pred ccEEEEeeCCCCChH-------HHHHHHhhhhccCCCCCccccccCCCCCCcChhhhhhcccccCCCCcccccccccccc
Q psy6086 2 SEYWLISAPGDKTCQ-------QTWENLNNVTSKQNNLSENYKFHIPDLKVGTLDQLVGLSDDLGKLDTFVDSVTVGTLD 74 (585)
Q Consensus 2 ~~ywLvS~P~~~~~~-------~~~~~L~~~~~~~~~~s~~~~f~iP~lKvGTLDsLv~lSDd~~~~~~~~~~~~~~~~~ 74 (585)
++|||||+|.+++++ ++| +.+.+++ +.+.+++|+||+|||||||+||+||||
T Consensus 5 ~~y~lvSlP~~~~~~~~~~~~~~~~--l~~~~~~--~~~~~~~f~IP~lKvGTLDsLv~lsDe----------------- 63 (388)
T d1u7la_ 5 NDFILISLPQNAQPVTAPGSKTDSW--FNETLIG--GRAFVSDFKIPEFKIGSLDTLIVESEE----------------- 63 (388)
T ss_dssp CEEEEEEEETTCCCTTSTTCCHHHH--HHHTGGG--GTSEEEECCCCCCBCSCGGGHHHHHHH-----------------
T ss_pred cceEEEECCCCCCCCCCchhhHHHH--HHhcccC--CCceeeecCCCCCCcccHHHHHHHHHH-----------------
Confidence 689999999876543 344 3333332 235788999999999999999999999
Q ss_pred cccccccchhhhhhhHHHHHHHHHHHHHhhhhhhHHHhhhhhhcCCcCHHhhhhhcccccccCCCCCCHHHHHHHHHHHH
Q psy6086 75 QLVGLSDDLGKLDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMANNNELGNYITQFQWDMAKYPIKQSLRNIADIINKQI 154 (585)
Q Consensus 75 ~~~~~~~~L~K~D~~ve~v~~Ki~~~~~~v~e~~~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKYp~~~~L~elv~~i~k~v 154 (585)
|+|+|++||++++||+++++++.++. +++.+++++||+|+++||++|+||+||||.++||+||+++|++++
T Consensus 64 --------L~KlD~~ve~vv~Kv~~~~~~l~~~~-~~~~~~l~v~~~~~~~yl~~F~Wd~aKyp~~~~l~elv~~i~~~~ 134 (388)
T d1u7la_ 64 --------LSKVDNQIGASIGKIIEILQGLNETS-TNAYRTLPINNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNES 134 (388)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHTTSSC-SSSCCSCCBTTBCHHHHHHTCCCCTTTSCTTSBHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHhccc-hhhhheEeECCccHHHHhhheecccccCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999987654 566678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccCcccCCCCCccccCCcceEEEEEecCCChHHHHHhhhhcCCccc
Q psy6086 155 GQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIV 234 (585)
Q Consensus 155 ~~id~dlK~k~s~Yn~~K~~L~~~~RK~~GnL~~rsL~dvV~~edfV~dSEyLtTllVvVPk~~~kewl~~YEtLt~~VV 234 (585)
++||+|+|+|+++||++|++|++++||++|||++|||+|||+|||||+|||||||++|||||++++||+++||+|++|||
T Consensus 135 ~~id~dlk~k~~~Yn~~K~~l~~~~RK~~G~L~~r~L~diV~~ed~V~dSEyLtTllVvVPk~~~~dwl~~YEtL~~~VV 214 (388)
T d1u7la_ 135 SQLDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVV 214 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTTSCCTTTCCGGGSCCSCSSEEEEEEEEEGGGHHHHHHHGGGSSTTBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeccHHhhCCHHHhccccccceEEEEEeecccHHHHHHHHhhhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccCCCceeEEEEEecccHHHHHHHHHHCCCeeeecccCHHHHHhchHHHHHHHHHHhhhcCcccCCCCCCCcc
Q psy6086 235 PRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQFGYATNSLPFLSSD 314 (585)
Q Consensus 235 PRSs~~I~eD~e~~Ly~VtlFKk~~deF~~~aRekkfiVRdF~ydee~~~~~~~e~~~l~~~~k~~~~~~t~s~~~~~~~ 314 (585)
||||++|++|+||+||+||+|||++|||+++|||+||+||||.|+|+++++.++|++++++++++||
T Consensus 215 PrSs~~i~~D~e~~L~~VtlFkk~~~eF~~~aRE~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~------------- 281 (388)
T d1u7la_ 215 PASASVIAEDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLR------------- 281 (388)
T ss_dssp TTCCEEEEECSSEEEEEEEEEGGGHHHHHHHHHHTTCEEECCCCCHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred CChhhhceecCCeeEEEEEEEhhhHHHHHHHHHHcCcccccccCCHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccccccCCCccchHHHHHHHHHHHHhhHHHHHHhHHHhhhhHHhHhhhhhhccCCcccccccccccccccc
Q psy6086 315 ELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFI 394 (585)
Q Consensus 315 ~~~~yi~~f~Wd~~ky~~~~~l~~~v~~i~~~v~~l~~~lk~~~~~Y~~~k~~~~~~~rk~~GnL~~~~L~~iv~~e~~~ 394 (585)
T Consensus 282 -------------------------------------------------------------------------------- 281 (388)
T d1u7la_ 282 -------------------------------------------------------------------------------- 281 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEEEEeeCcchhHHHHhhhhhccccccCccccccccCcceeeeeeehhhhhHHHHHHHHhhhhccccccCCCc
Q psy6086 395 LDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILPHS 474 (585)
Q Consensus 395 ~dte~L~t~~V~Vpk~~~~df~~sye~l~~~VVP~S~~~i~~D~~~~Ly~V~ifk~~~~~f~~~~re~~~~~r~f~~~~~ 474 (585)
T Consensus 282 -------------------------------------------------------------------------------- 281 (388)
T d1u7la_ 282 -------------------------------------------------------------------------------- 281 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchhHHHHHHHHHhcCCCCCCCCCCC----
Q psy6086 475 FGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRLRDVLQQLYGHLDSSAQGGSQ---- 550 (585)
Q Consensus 475 ~~~L~r~~~~~fse~f~awiHlKalRvFVESVLRYGLP~~f~a~~i~p~~k~~kkl~~~L~~~~~~l~~~~~~~~~---- 550 (585)
+.|+|||++||||+|++|||||||||||||||||||||+|++++++|++|+++|++++|.+.||||++++.+.+.
T Consensus 282 -~~L~r~~~~~fse~f~~wiHiKalRvFVESVLRYGLP~~F~~~li~p~~k~~kklr~~L~~~f~~L~~~~~~~~~~~~~ 360 (388)
T d1u7la_ 282 -VQLVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPHFNIKIIAVPPKNLSKCKSELIDAFGFLGGNAFMKDKKGKI 360 (388)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEEECTTCHHHHHHHHHHHHGGGGCTTCC-------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhcCCCccceEEEEeeCCchHHHHHHHHHHHhhccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876321
Q ss_pred -CCCCCCCCCCCCCCCcccceEEEEEee
Q psy6086 551 -HHDSVEIPGLGFGQADYFPYVYYKINI 577 (585)
Q Consensus 551 -~~~~~~~~~~~~~~~~~~pyV~~~i~~ 577 (585)
.++....++.+++|+||||||+|+|++
T Consensus 361 ~~~d~~~~~~~~~~~~ey~PyV~~~i~l 388 (388)
T d1u7la_ 361 NKQDTSLHQYASLVDTEYEPFVMYIINL 388 (388)
T ss_dssp -----------------CCSSEEEEEEC
T ss_pred CCCcccccccccccCCcccceEEEEecC
Confidence 122333344566899999999999986
No 2
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=1.1e-48 Score=408.64 Aligned_cols=162 Identities=36% Similarity=0.681 Sum_probs=160.0
Q ss_pred CCcchhhhhhhhhccccccCCCccchHHHHHHHHHHHHhhHHHHHHhHHHhhhhHHhHhhhhhhccCCcccccccccccc
Q psy6086 311 LSSDELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKK 390 (585)
Q Consensus 311 ~~~~~~~~yi~~f~Wd~~ky~~~~~l~~~v~~i~~~v~~l~~~lk~~~~~Y~~~k~~~~~~~rk~~GnL~~~~L~~iv~~ 390 (585)
.+..++++||++|+||++|||.++||+|+++.|++++.+||+|+|.|+++||++|.++++++||++|||++|||++||++
T Consensus 98 v~~~~~~~yl~~F~Wd~aKyp~~~~l~elv~~i~~~~~~id~dlk~k~~~Yn~~K~~l~~~~RK~~G~L~~r~L~diV~~ 177 (388)
T d1u7la_ 98 INNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDIVKP 177 (388)
T ss_dssp BTTBCHHHHHHTCCCCTTTSCTTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTTSCCTTTCCG
T ss_pred ECCccHHHHhhheecccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeccHHhhCCH
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceEEEEEEeeCcchhHHHHhhhhhccccccCccccccccCcceeeeeeehhhhhHHHHHHHHhhhhcccccc
Q psy6086 391 EHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFI 470 (585)
Q Consensus 391 e~~~~dte~L~t~~V~Vpk~~~~df~~sye~l~~~VVP~S~~~i~~D~~~~Ly~V~ifk~~~~~f~~~~re~~~~~r~f~ 470 (585)
||+|+|||||+|++|||||++++||+++||+|++||||||+++|.+|+||+||+||+||+++++|+++|||+||++|+|.
T Consensus 178 ed~V~dSEyLtTllVvVPk~~~~dwl~~YEtL~~~VVPrSs~~i~~D~e~~L~~VtlFkk~~~eF~~~aRE~kf~vRdF~ 257 (388)
T d1u7la_ 178 EDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFN 257 (388)
T ss_dssp GGSCCSCSSEEEEEEEEEGGGHHHHHHHGGGSSTTBCTTCCEEEEECSSEEEEEEEEEGGGHHHHHHHHHHTTCEEECCC
T ss_pred HHhccccccceEEEEEeecccHHHHHHHHhhhcCcccCChhhhceecCCeeEEEEEEEhhhHHHHHHHHHHcCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q psy6086 471 LP 472 (585)
Q Consensus 471 ~~ 472 (585)
|+
T Consensus 258 y~ 259 (388)
T d1u7la_ 258 YS 259 (388)
T ss_dssp CC
T ss_pred CC
Confidence 96
No 3
>d1ng7a_ a.178.1.1 (A:) Soluble domain of poliovirus core protein 3a {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=66.14 E-value=2.5 Score=31.98 Aligned_cols=28 Identities=18% Similarity=0.400 Sum_probs=24.5
Q ss_pred eCcchhHHHHhhhhhccccccCccccccccCcceeeeeeehhhhhHHHHHHHHhhhhcc
Q psy6086 408 PRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYAL 466 (585)
Q Consensus 408 pk~~~~df~~sye~l~~~VVP~S~~~i~~D~~~~Ly~V~ifk~~~~~f~~~~re~~~~~ 466 (585)
|-....|.|+|+.+ ++.++.|++|||++
T Consensus 18 pP~aI~DLLkSVDS-------------------------------eEVReYCk~kgWii 45 (60)
T d1ng7a_ 18 PPECINDLLQAVDS-------------------------------QEVRDYCEKKGWIV 45 (60)
T ss_dssp SSTTTHHHHHHHCC-------------------------------HHHHHHHHHHTCCC
T ss_pred CChHHHHHHHhcCc-------------------------------HHHHHHHHHCCeee
Confidence 55667888888888 89999999999999
No 4
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]}
Probab=21.70 E-value=1.3e+02 Score=28.36 Aligned_cols=92 Identities=15% Similarity=0.362 Sum_probs=56.4
Q ss_pred EEEEeeCcchhHHHHhhhh-hcc--------cccc--Ccc-----ccccccCcceeeeeeehhhh------------hHH
Q psy6086 403 LLVVVPRNQVTEWVQNYEK-LTA--------MIVP--RSS-----QLVSQDQDFALYTVTLFKKV------------QDE 454 (585)
Q Consensus 403 ~~V~Vpk~~~~df~~sye~-l~~--------~VVP--~S~-----~~i~~D~~~~Ly~V~ifk~~------------~~~ 454 (585)
+=+-||++.+.+|.+..-. +.+ .|-| +|- --++.||+ +-|-|-++++. .++
T Consensus 153 lNlfvP~s~I~~F~~~Vf~~il~~~~~~GpiLvYP~~~~kwd~~~s~v~Pdee-vfylvalL~sa~~~~~~~~l~~qN~~ 231 (289)
T d1w1oa1 153 LNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSED-VFYAVSLLFSSVAPNDLARLQEQNRR 231 (289)
T ss_dssp EEEEEEGGGHHHHHHHHTTTTTTTSCCCSCEEEEEEEGGGSCTTSSCCCCSSS-EEEEEEECCCC---CHHHHHHHHHHH
T ss_pred eEEecchhHHHHHHHHHHHhhccccCCCCeEEEEEccccccCCCccccCCCCC-EEEEEEEecCCCCcchHHHHHHHHHH
Confidence 3478999999999876543 211 0111 111 12346666 55888888766 344
Q ss_pred HHHHHHhhhhccccccCCCccchHHHHHHhhhhHH-HHHHHHHHH
Q psy6086 455 FRHHAREKKYALNSFILPHSFGPLVRWLKVNFSEC-FCAWIHVKA 498 (585)
Q Consensus 455 f~~~~re~~~~~r~f~~~~~~~~L~r~~~~~fse~-f~awiHlKa 498 (585)
+.+.|+..|..++..--. ...-..| +.||+.. ...|.+.|+
T Consensus 232 il~~c~~aG~~~k~yl~~--~~t~~dW-~~HFG~~kW~~F~~~K~ 273 (289)
T d1w1oa1 232 ILRFCDLAGIQYKTYLAR--HTDRSDW-VRHFGAAKWNRFVEMKN 273 (289)
T ss_dssp HHHHHHHTTCCCEESSCC--CSSHHHH-HHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcceEeCCC--CCCHHHH-HHHcCcchHHHHHHHHh
Confidence 556777777766544211 1333478 6799975 999998886
No 5
>d1ng7a_ a.178.1.1 (A:) Soluble domain of poliovirus core protein 3a {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=20.63 E-value=16 Score=27.28 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=13.7
Q ss_pred HHHHHHHHHHCCCee
Q psy6086 259 QDEFRHHAREKKFIV 273 (585)
Q Consensus 259 ~deF~~~aRekkfiV 273 (585)
-+|.++-||+|||+|
T Consensus 31 SeEVReYCk~kgWii 45 (60)
T d1ng7a_ 31 SQEVRDYCEKKGWIV 45 (60)
T ss_dssp CHHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHCCeee
Confidence 478999999999999
No 6
>d2ivya1 d.58.58.1 (A:2-89) Hypothetical protein SSO1404 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=16.32 E-value=43 Score=26.29 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCC-CCCceEEEEecCCCchhHHHHHHHHHhcC
Q psy6086 498 ALRVFVESVLRYGL-PVNFQAMLLHPNKKNTKRLRDVLQQLYGH 540 (585)
Q Consensus 498 alRvFVESVLRYGL-P~~f~a~~i~p~~k~~kkl~~~L~~~~~~ 540 (585)
..+=...-+.+||| ++++..|...-.+...++|+..|..+...
T Consensus 15 rr~kv~k~l~~yGl~rvQ~SVFeg~l~~~~~~~l~~~l~~~i~~ 58 (88)
T d2ivya1 15 LRNRVAEFLKKKGLDRIQYSVFMGDLNSSRLKDVEAGLKIIGNR 58 (88)
T ss_dssp HHHHHHHHHHHTTCEEEETTEEEEEECHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhCCcceEeeEEEEEeCHHHHHHHHHHHHHHhcc
Confidence 33444566789999 89999999999889999999999998864
No 7
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=13.19 E-value=2.8e+02 Score=21.39 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=32.4
Q ss_pred ccchHHHHHHHHHHHHhhHHHHHHhHHHhhhhHHhHhhhhhh
Q psy6086 333 KQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKK 374 (585)
Q Consensus 333 ~~~l~~~v~~i~~~v~~l~~~lk~~~~~Y~~~k~~~~~~~rk 374 (585)
.++..++...+.+.+..|+.+++........+..+++.++.+
T Consensus 60 ~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~ 101 (107)
T d1fxka_ 60 RVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888777777777777766654
No 8
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.07 E-value=2.1e+02 Score=29.98 Aligned_cols=23 Identities=9% Similarity=0.027 Sum_probs=14.2
Q ss_pred CHHHHHhchHHHHHHHHHHhhhc
Q psy6086 279 NEEELAAGKNEITKLVTDKKKQF 301 (585)
Q Consensus 279 dee~~~~~~~e~~~l~~~~k~~~ 301 (585)
..+++++.++|++++.++.+.+.
T Consensus 707 T~eei~kL~~E~~~l~~Ei~~L~ 729 (760)
T d1bjta_ 707 TKERYQKLLKQKQEKETELENLL 729 (760)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666665554
No 9
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=12.01 E-value=3e+02 Score=21.13 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=25.1
Q ss_pred ecccHHHHHHHHHHCCCeeeecccCHHHHHhchHHHHHHHHHHhh
Q psy6086 255 FKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKK 299 (585)
Q Consensus 255 FKk~~deF~~~aRekkfiVRdF~ydee~~~~~~~e~~~l~~~~k~ 299 (585)
+|...+.|+.+++.+|+-+ +-+.+.+.-+++.++.++...
T Consensus 7 ir~n~e~v~~~l~~R~~~~-----~ld~i~~ld~~rr~l~~~~e~ 46 (110)
T d1seta1 7 LRQEPEVFHRAIREKGVAL-----DLEALLALDREVQELKKRLQE 46 (110)
T ss_dssp HHHCHHHHHHHHHHTTCCC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHcCCcc-----CHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999998743 345555555555544444433
No 10
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=11.53 E-value=1.6e+02 Score=22.93 Aligned_cols=41 Identities=12% Similarity=0.227 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6086 140 KQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEK 180 (585)
Q Consensus 140 ~~~L~elv~~i~k~v~~id~dlK~k~s~Yn~~K~~L~~~~R 180 (585)
.++..++...+.+.+..|+..++.-......+...+..++.
T Consensus 60 ~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~ 100 (107)
T d1fxka_ 60 RVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777666666666665555543
Done!