RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6086
(585 letters)
>gnl|CDD|217433 pfam03223, V-ATPase_C, V-ATPase subunit C.
Length = 371
Score = 392 bits (1009), Expect = e-133
Identities = 152/303 (50%), Positives = 205/303 (67%), Gaps = 28/303 (9%)
Query: 4 YWLISAPGDKTCQ---QTWENLNNVTSKQNNLSENYKFHIPDLKVGTLDQLVGLSDDLGK 60
YWL+S P KT Q W+ L V+S +NLS KF+IPDLKVGTLD LV LSD+LGK
Sbjct: 1 YWLVSLPVLKTDSQANQIWKELLLVSSLGSNLSNVSKFNIPDLKVGTLDSLVTLSDELGK 60
Query: 61 LDTFVDSVTVGTLDQLVGLSDDLGKLDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMANN 120
LDT V+ V K+ L E+LEDQ KL+ L N+
Sbjct: 61 LDTQVEGVL-------------------------KKIERILRELLEDQGGKLSSTLRVND 95
Query: 121 NELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEK 180
L Y+T+FQWD AKYP KQSL+ + D+++K++ QI+ DL++KS+ YNN KSNL +E+
Sbjct: 96 VSLDQYLTRFQWDSAKYPTKQSLKELVDLLSKEVAQIDNDLRSKSAEYNNAKSNLAALER 155
Query: 181 KQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQL 240
KQTG+L R+LAD+VK E F+LDSEYLTT+LV VP+N V +++ +YE L+ M+VPRS+++
Sbjct: 156 KQTGNLSVRSLADIVKPEDFVLDSEYLTTVLVAVPKNSVKDFLASYETLSDMVVPRSAKV 215
Query: 241 VSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQ 300
+++D ++AL+TVTLFKKV ++F+ REKKFIVR+F Y+EE K E TKL TD+KKQ
Sbjct: 216 IAEDDEYALFTVTLFKKVVEDFKTKCREKKFIVRDFKYSEELSEEEKRERTKLATDEKKQ 275
Query: 301 FGY 303
G
Sbjct: 276 EGA 278
Score = 363 bits (934), Expect = e-121
Identities = 132/273 (48%), Positives = 189/273 (69%), Gaps = 20/273 (7%)
Query: 318 NYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTG 377
Y+T+FQWD AKYP KQSL+ + D+++K++ QI+ DL++KS+ YNN KSNL +E+KQTG
Sbjct: 100 QYLTRFQWDSAKYPTKQSLKELVDLLSKEVAQIDNDLRSKSAEYNNAKSNLAALERKQTG 159
Query: 378 SLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQD 437
+L R+LAD+VK E F+LDSEYLTT+LV VP+N V +++ +YE L+ M+VPRS++++++D
Sbjct: 160 NLSVRSLADIVKPEDFVLDSEYLTTVLVAVPKNSVKDFLASYETLSDMVVPRSAKVIAED 219
Query: 438 QDFALYTVTLFKKVQDEFRHHAREKKYALNSFILPHS-------------------FGPL 478
++AL+TVTLFKKV ++F+ REKK+ + F G L
Sbjct: 220 DEYALFTVTLFKKVVEDFKTKCREKKFIVRDFKYSEELSEEEKRERTKLATDEKKQEGAL 279
Query: 479 VRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRLRDVLQQLY 538
+R L+V FSE F AWIH+KALRVFVESVLRYGLP NFQA+L+ P+KK K++R +L QL+
Sbjct: 280 LRLLRVAFSEVFIAWIHLKALRVFVESVLRYGLPPNFQAVLIQPDKKKEKKVRKILNQLF 339
Query: 539 GHLDSSAQGGSQHHDSVEIPGLGFGQADYFPYV 571
G+L +A + + G +Y+PYV
Sbjct: 340 GYLGGNAASYDK-DGDIVDDPSLLGDEEYYPYV 371
>gnl|CDD|227456 COG5127, COG5127, Vacuolar H+-ATPase V1 sector, subunit C [Energy
production and conversion].
Length = 383
Score = 192 bits (490), Expect = 7e-56
Identities = 79/294 (26%), Positives = 140/294 (47%), Gaps = 27/294 (9%)
Query: 310 FLSSDELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQ 369
+ Y F+WD + +S+ +I+ + +I D + K+ ++ K +
Sbjct: 91 GIVYGSTPEYGDFFEWDRQSFVTNKSIEKAILLIDGEYRRISKDYREKAEEFDGAKRECE 150
Query: 370 NMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPR 429
+++K GSL +L +V++E + SE+LT + V VP+ V E+ ++YE L+ + P
Sbjct: 151 KLQRKTRGSLSDISLGIIVEREDVVEGSEFLTVVYVAVPKALVPEFNRSYETLSPHVSPD 210
Query: 430 SSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILPHSFGP------------ 477
S++ V+ D+++ L+ V +FKK +++FR ARE+K+ + F
Sbjct: 211 SAEKVNSDEEYVLFKVYVFKKGEEDFRTMAREEKFMVREFDKNMVLSEEMIAERDRAAEK 270
Query: 478 -------LVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRL 530
L+R+ V +E F WIH+K LRV+VESVLRYGLP F + KK+ ++
Sbjct: 271 ESAMEKILMRFAHVALTEVFRIWIHIKLLRVYVESVLRYGLPPEFMFFITRGEKKSESKV 330
Query: 531 RDVLQQLYGHLDSSAQGGSQHHDSVEIPGLGFGQ-------ADYFPYVYYKINI 577
+ L + +L S+ + D G +Y P+V + N
Sbjct: 331 KAQLIAIAKNLPSNRIVYEKEGD-NNDEGEILFAFAELSTDGEYEPFVLFVFNY 383
Score = 166 bits (421), Expect = 6e-46
Identities = 63/231 (27%), Positives = 114/231 (49%), Gaps = 3/231 (1%)
Query: 51 LVGLSDDLGKLDTFVDSVTVGTLDQLVGLSDDLGKLDTFVDSVTHKVAVYLGEVLEDQRD 110
L G + + + S +LD L+ S+ LGKLD + K+
Sbjct: 28 LYGGRSTVSRFL--LPSFKGVSLDGLINQSERLGKLDKQCEGAISKILKIFMGYCRSSNG 85
Query: 111 KLAENLMANNNELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNN 170
+ Y F+WD + +S+ +I+ + +I D + K+ ++
Sbjct: 86 DRVGKGI-VYGSTPEYGDFFEWDRQSFVTNKSIEKAILLIDGEYRRISKDYREKAEEFDG 144
Query: 171 LKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLT 230
K + +++K GSL +L +V++E + SE+LT + V VP+ V E+ ++YE L+
Sbjct: 145 AKRECEKLQRKTRGSLSDISLGIIVEREDVVEGSEFLTVVYVAVPKALVPEFNRSYETLS 204
Query: 231 AMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEE 281
+ P S++ V+ D+++ L+ V +FKK +++FR ARE+KF+VREF N
Sbjct: 205 PHVSPDSAEKVNSDEEYVLFKVYVFKKGEEDFRTMAREEKFMVREFDKNMV 255
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 33.6 bits (77), Expect = 0.35
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 17/83 (20%)
Query: 131 QWDMAKYPIKQSLRNIADIINKQ-----------------IGQIEADLKTKSSAYNNLKS 173
QW+ + P+ R++ + + I ++E++L+TK Y L
Sbjct: 358 QWEAHRTPLIDEYRSLKEKNRNKEDETQRQLDEIKKLRNKIEELESELQTKEQLYKQLLD 417
Query: 174 NLQNMEKKQTGSLLTRNLADLVK 196
+N K + S TR + +++K
Sbjct: 418 EYENAPKSVSRSAYTRRILEIIK 440
Score = 33.6 bits (77), Expect = 0.35
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 17/83 (20%)
Query: 324 QWDMAKYPIKQSLRNIADIINKQ-----------------IGQIEADLKTKSSAYNNLKS 366
QW+ + P+ R++ + + I ++E++L+TK Y L
Sbjct: 358 QWEAHRTPLIDEYRSLKEKNRNKEDETQRQLDEIKKLRNKIEELESELQTKEQLYKQLLD 417
Query: 367 NLQNMEKKQTGSLLTRNLADLVK 389
+N K + S TR + +++K
Sbjct: 418 EYENAPKSVSRSAYTRRILEIIK 440
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 31.4 bits (71), Expect = 1.6
Identities = 67/339 (19%), Positives = 122/339 (35%), Gaps = 67/339 (19%)
Query: 62 DTFVDSVTV--GTLDQLVGLSDDLGKLDTFVDSVTH-----KVAVYLGEVLEDQR----- 109
D F++S+ V G +D L+ S D + +D + + L +V++ R
Sbjct: 127 DVFLNSIFVGQGEMDSLI--SGDPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEISN 184
Query: 110 -DKLAENLMANNNELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAY 168
D L E L ++N EL N Q D + I K+I ++ + Y
Sbjct: 185 IDYLEEKLKSSNLELENIKKQIADDEKSH----------SITLKEIERLSIEYNNAMDDY 234
Query: 169 NNLKSNLQNM-----EKKQTGSLLTRNLADLVKKEHFI-----LDSEY--LTTLLVVVPR 216
NNLKS L + K + S + +DL + L+ + + V R
Sbjct: 235 NNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNR 294
Query: 217 NQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREF 276
N + + Y K I + L + D + Y HA KK V +
Sbjct: 295 NYIND----YFKYKNDIENKKQILSNIDAEINKY--------------HAIIKKLSVLQK 336
Query: 277 VYNE-EELAAGKNEITKLVTDKKKQFGYATNSLPFLSSDELGNYITQFQWDMAKYPIKQS 335
YN+ + + +++ + + + GY + +L S I + + +Y
Sbjct: 337 DYNDYIKKKSRYDDLNNQILELE---GYEMDYNSYLKS------IESLKKKIEEYSKNI- 386
Query: 336 LRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKK 374
++ I++ + E D N + LQ++ K
Sbjct: 387 -ERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSK 424
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 31.2 bits (70), Expect = 1.9
Identities = 42/201 (20%), Positives = 66/201 (32%), Gaps = 40/201 (19%)
Query: 241 VSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQ 300
+ + Q F V L +VQ R E+ K + + L T +K
Sbjct: 880 LQRRQQFEEQLVELSTEVQSLIR------------------EIKDAKEQDSPLETFLEK- 920
Query: 301 FGYATNSLPFLSSDELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSA 360
+SS E N Q + + K +K + DI NK + LK K +
Sbjct: 921 --DQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETE 978
Query: 361 YNNLKSNLQNMEK-------------------KQTGSLLTRNLADLVKKEHFILDSEYLT 401
N + + L+ EK K L NL ++ E L
Sbjct: 979 LNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELK 1038
Query: 402 TLLVVVPRNQVTEWVQNYEKL 422
L + + QV + Q ++KL
Sbjct: 1039 QHLKEMGQMQVLQMKQEHQKL 1059
>gnl|CDD|214481 smart00036, CNH, Domain found in NIK1-like kinases, mouse citron
and yeast ROM1, ROM2.
Length = 302
Score = 30.0 bits (68), Expect = 3.5
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 393 FILD-SEYLTTLLVVVPRNQVTE-WVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKK 450
++L+ S+ TL ++ R VT+ WV + MI + QL ++ L +K
Sbjct: 25 YVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQL------YSHPLSALVEK 78
Query: 451 VQDEFRHHAREKKYALNSFILPHSFG 476
+ +K L +P G
Sbjct: 79 KEALGSARLVIRKNVL--TKIPDVKG 102
Score = 28.9 bits (65), Expect = 7.5
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 200 FILD-SEYLTTLLVVVPRNQVTE-WVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKK 257
++L+ S+ TL ++ R VT+ WV + MI + QL ++ L +K
Sbjct: 25 YVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQL------YSHPLSALVEK 78
Query: 258 VQDEFRHHAREKKFIVREF 276
+ +K ++ +
Sbjct: 79 KEALGSARLVIRKNVLTKI 97
>gnl|CDD|145320 pfam02097, Filo_VP35, Filoviridae VP35.
Length = 321
Score = 29.5 bits (66), Expect = 4.5
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 281 EELAAGKNEITKLVTDKKKQFGYATNSLPFLSSDELGNYITQFQWDMAKYP----IKQSL 336
E+L GK +T + D + + + Q Q D + +K++L
Sbjct: 12 EQLMTGKIPVTDVFGDIENKPEKLYKRRKPKGTVGTRTSSKQTQTDDIIWDLLEEVKKTL 71
Query: 337 RNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKK 390
++ +N+Q IE+ ++ +LK +Q+M K T S L R+ A++V K
Sbjct: 72 ASLLSAVNRQTSAIESLESRVTTLERSLKP-VQDMGK--TISSLNRSCAEMVAK 122
Score = 29.5 bits (66), Expect = 4.8
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 139 IKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKK 197
+K++L ++ +N+Q IE+ ++ +LK +Q+M K T S L R+ A++V K
Sbjct: 67 VKKTLASLLSAVNRQTSAIESLESRVTTLERSLKP-VQDMGK--TISSLNRSCAEMVAK 122
>gnl|CDD|203795 pfam07889, DUF1664, Protein of unknown function (DUF1664). The
members of this family are hypothetical plant proteins
of unknown function. The region featured in this family
is approximately 100 amino acids long.
Length = 125
Score = 28.1 bits (63), Expect = 6.1
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 104 VLEDQRDKLAENLMANNNELGNYITQFQW--DMAKYPIKQSLRNIADIINKQIGQIEADL 161
+ Q +K++E++ A L I D K + + + +I + I D+
Sbjct: 46 SVGKQLEKVSESIAAAKKHLSQRIDNLDDKLDEQKEISESTRDEVTEIRED-LSNIGEDV 104
Query: 162 KTKSSAYNNLKSNLQNMEKKQ 182
K+ A L+ L ++E KQ
Sbjct: 105 KSVHQAVEGLEGKLDSIEYKQ 125
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)
domain. Putative methyl transferase, based on outlier
plant homologues.
Length = 124
Score = 28.1 bits (63), Expect = 6.9
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 100 YLGEVLEDQRDKLAENLMANNNELGNYITQFQWDMAKYPIKQSLRNIADIIN 151
Y+GE++ + + + Y+ D+ + N+A IN
Sbjct: 30 YVGEIITSEEAEERPKAYDTDGAKAFYLFDIDSDLCIDA--RRKGNLARFIN 79
>gnl|CDD|235758 PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 543
Score = 29.2 bits (66), Expect = 8.3
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 135 AKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYN--NLKSNLQNMEKKQTGSLLTRNLA 192
AK + + + + I +I++++K + + N +L L+ + RN
Sbjct: 400 AKNAENNEFKKVNRSVEEDIARIKSEIKFLNGSINPYDLIDELKKTMWDYVS--IVRNEK 457
Query: 193 DLVKKEHFILD-SEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLV 241
L K I + E L L V + +L MI+ ++LV
Sbjct: 458 GLKKALEEINELKEKLKDLKVNGIVD-----FNKALELENMIL--VAELV 500
Score = 29.2 bits (66), Expect = 8.3
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 328 AKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYN--NLKSNLQNMEKKQTGSLLTRNLA 385
AK + + + + I +I++++K + + N +L L+ + RN
Sbjct: 400 AKNAENNEFKKVNRSVEEDIARIKSEIKFLNGSINPYDLIDELKKTMWDYVS--IVRNEK 457
Query: 386 DLVKKEHFILD-SEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLV 434
L K I + E L L V + +L MI+ ++LV
Sbjct: 458 GLKKALEEINELKEKLKDLKVNGIVD-----FNKALELENMIL--VAELV 500
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.382
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,071,156
Number of extensions: 2810560
Number of successful extensions: 2672
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2652
Number of HSP's successfully gapped: 56
Length of query: 585
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 483
Effective length of database: 6,413,494
Effective search space: 3097717602
Effective search space used: 3097717602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.7 bits)