RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6086
(585 letters)
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein;
HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP:
e.57.1.1
Length = 392
Score = 338 bits (869), Expect = e-112
Identities = 95/290 (32%), Positives = 158/290 (54%), Gaps = 24/290 (8%)
Query: 312 SSDELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNM 371
++ + Y+ FQW K+ + +S++++ +I+ + Q++AD++ + YN+ K+NL
Sbjct: 103 NNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAA 162
Query: 372 EKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSS 431
E+K+TG L R+L D+VK E F+L+SE+LTT+LV VP++ +++ ++YE L+ +VP S+
Sbjct: 163 ERKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASA 222
Query: 432 QLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILP------------------- 472
++++D ++ L+ V LFKK EF AREKK+ F
Sbjct: 223 SVIAEDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQ 282
Query: 473 HSFGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRLRD 532
LVR K + + F W H+KALRV+VESVLRYGLP +F ++ KN + +
Sbjct: 283 SLRVQLVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPHFNIKIIAVPPKNLSKCKS 342
Query: 533 VLQQLYGHLDSSA-----QGGSQHHDSVEIPGLGFGQADYFPYVYYKINI 577
L +G L +A +G D+ +Y P+V Y IN+
Sbjct: 343 ELIDAFGFLGGNAFMKDKKGKINKQDTSLHQYASLVDTEYEPFVMYIINL 392
Score = 329 bits (844), Expect = e-108
Identities = 89/305 (29%), Positives = 156/305 (51%), Gaps = 29/305 (9%)
Query: 1 MSEYWLISAPGDKTCQQTWENL---NNVTSKQNNLSENYKFHIPDLKVGTLDQLVGLSDD 57
+++ LIS P + + + + F IP+ K+G+LD L+ S++
Sbjct: 8 ANDFILISLPQNAQPVTAPGSKTDSWFNETLIGGRAFVSDFKIPEFKIGSLDTLIVESEE 67
Query: 58 LGKLDTFVDSVTVGTLDQLVGLSDDLGKLDTFVDSVTHKVAVYLGEVLEDQRDKLAENLM 117
L K+D + + K+ L L + L
Sbjct: 68 LSKVDNQIGASI-------------------------GKIIEILQG-LNETSTNAYRTLP 101
Query: 118 ANNNELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQN 177
NN + Y+ FQW K+ + +S++++ +I+ + Q++AD++ + YN+ K+NL
Sbjct: 102 INNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAA 161
Query: 178 MEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRS 237
E+K+TG L R+L D+VK E F+L+SE+LTT+LV VP++ +++ ++YE L+ +VP S
Sbjct: 162 AERKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPAS 221
Query: 238 SQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDK 297
+ ++++D ++ L+ V LFKK EF AREKKFI REF Y+EE + K E + +
Sbjct: 222 ASVIAEDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLE 281
Query: 298 KKQFG 302
+
Sbjct: 282 QSLRV 286
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 79.1 bits (194), Expect = 2e-15
Identities = 79/537 (14%), Positives = 160/537 (29%), Gaps = 132/537 (24%)
Query: 73 LDQLVGLSDDLGK----LDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMANNNE----LG 124
+D ++ D + T + V ++ EVL L + +
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 125 NYITQFQWDMAKYPIKQSLRNIADIINK-QIGQIEADLKTKSSAYNNLKSN----LQNME 179
YI Q + L N + K + +++ LK + + L+ + +
Sbjct: 111 MYIEQ----------RDRLYNDNQVFAKYNVSRLQPYLKLRQALL-ELRPAKNVLIDGV- 158
Query: 180 KKQTG-SLLTRN-LADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRS 237
+G + + + + +L + N ++ +KL I P
Sbjct: 159 -LGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 238 SQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKF-----IVREFVYNEEELAAGKNEITK 292
+ + L ++ Q E R + K + ++ V N + A
Sbjct: 214 TSRSDHSSNIKLRIHSI----QAELRRLLKSKPYENCLLVLLN-VQNAKAWNAFNLSCKI 268
Query: 293 LVTDKKKQFGYATNSLPF-----LSSDELGNYITQFQWD--MAKY--PIKQSLRNIADII 343
L+T + KQ T+ L +S D +T + + KY Q L
Sbjct: 269 LLTTRFKQ---VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 344 NKQ-IGQIEADLKTKSSAYNNLK-SNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLT 401
N + + I ++ + ++N K N + SL L ++ F
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--NVLEPAEYRKMF-------- 375
Query: 402 TLLVVVPRN-----QVTE--WVQNYEKLTAMIVP--RSSQLVSQDQDFALYTV-----TL 447
L V P + + W + ++V LV + + ++ L
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 448 FKKVQDEFRHHAR-------EKKYALNSFILPHSFG-------------------PLVRW 481
K+++E+ H K + + I P+ L R
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 482 LKVNFSECFCAWIHVKALRVFVESVLRY-GLPVNFQAMLLHPNKKNTKRLRDVLQQL 537
+ ++F ++ K +R+ N +L + LQQL
Sbjct: 496 VFLDFR-----FLEQK---------IRHDSTAWNASGSIL-----------NTLQQL 527
Score = 65.6 bits (159), Expect = 3e-11
Identities = 78/527 (14%), Positives = 153/527 (29%), Gaps = 168/527 (31%)
Query: 148 DIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYL 207
DI++ + K ++Q+M K L + ++ + + + L
Sbjct: 20 DILSVFEDAFVDNFDCK---------DVQDMPK---SILSKEEIDHIIMSKDAVSGTLRL 67
Query: 208 TTLLVVVPRNQVTEWV-----QNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEF 262
L+ V ++V NY+ L + I Q + + L+ Q
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 263 RHH-AREKKFI-VREFVYN---EEELA------AGKNEITKLVTDKKKQFGYATNSLPFL 311
+++ +R + ++ +R+ + + + +GK T + D S
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK---TWVALD-------VCLSYKVQ 177
Query: 312 SSDELGNYITQFQW-DMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQN 370
+ + W ++ S + +++ K + QI+ + ++S +N+K + +
Sbjct: 178 CKMDFKIF-----WLNLKNC---NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 371 MEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAM----- 425
++ + + Y LLV+ N VQN + A
Sbjct: 230 IQAE---------------LRRLLKSKPYENCLLVL--LN-----VQNAKAWNAFNLSCK 267
Query: 426 --IVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFI------LPH---S 474
+ R Q V+ A T E K L ++ LP +
Sbjct: 268 ILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTP--DEVKSLLLKYLDCRPQDLPREVLT 324
Query: 475 FGPLV----------------RWLKVN-------------------FSECFCAWIHVKAL 499
P W VN + + F L
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF------DRL 378
Query: 500 RVFVESVLRYGLPVNFQAML---------------LHP-------NKKNTKRLRDVLQQL 537
VF S +P +++ LH K++T + + +L
Sbjct: 379 SVFPPSAH---IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 538 YGHLDSSAQGGSQHH----DSVEIPGLGFGQADYFP-----YVYYKI 575
L++ H D IP F D P Y Y I
Sbjct: 436 KVKLENEYA----LHRSIVDHYNIP-KTFDSDDLIPPYLDQYFYSHI 477
Score = 60.6 bits (146), Expect = 1e-09
Identities = 74/490 (15%), Positives = 160/490 (32%), Gaps = 127/490 (25%)
Query: 4 YWL----ISAPGD--KTCQQTWENLNNVTSKQNNLSENYKFHIPDLKVGTLDQLVG---- 53
+WL ++P + Q+ ++ + +++ S N K I ++ L
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 54 -----LSD--DLGKLDTFVD---SVTVGTLDQLVGLSDDLGKLDTFVDSVTHKVAVYLGE 103
L + + + F + + + T + V +D L + TH +
Sbjct: 245 NCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQV--TDFLS-----AATTTHISLDHHSM 296
Query: 104 VL-EDQRDKLAENLMANNNELGNYITQFQWDMAKYPIKQSLRNIADIINKQ-IGQIEADL 161
L D+ ++L+ Y+ Q L N + + I +
Sbjct: 297 TLTPDE----VKSLLLK------YLDC---------RPQDLPREVLTTNPRRLSIIAESI 337
Query: 162 KTKSSAYNNLK-SNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRN--- 217
+ + ++N K N + SL L ++ F L V P +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSL--NVLEPAEYRKMF--------DRLSVFPPSAHI 387
Query: 218 --QVTE--WVQNYEKLTAMIVP--RSSQLVSQDQDFALYTV-----TLFKKVQDEFRHHA 266
+ W + ++V LV + + ++ L K+++E+ H
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH- 446
Query: 267 REKKFIVREFVYNEEELAAGKNEITKLVTDKKKQFGYATNSLPF-LSSDELGNYITQFQW 325
+ + YN + +++ D Y + + L + E +T F+
Sbjct: 447 --RSIVDH---YNIPK-TFDSDDLIPPYLD-----QYFYSHIGHHLKNIEHPERMTLFR- 494
Query: 326 DMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLA 385
+ R +E ++ S+A+N +GS+L L
Sbjct: 495 --MVF---LDFR-----------FLEQKIRHDSTAWN------------ASGSILN-TLQ 525
Query: 386 DLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS---QDQDFAL 442
L + +I D++ LV N + +++ E +I + + L+ +D A+
Sbjct: 526 QLKFYKPYICDNDPKYERLV----NAILDFLPKIE--ENLICSKYTDLLRIALMAEDEAI 579
Query: 443 YTVTLFKKVQ 452
+ K+VQ
Sbjct: 580 FEEA-HKQVQ 588
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.003
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 287 KNEITKLVTDKKKQFGYATNSLPFLS 312
K + KL K YA +S P L+
Sbjct: 19 KQALKKLQASLKL---YADDSAPALA 41
Score = 31.5 bits (70), Expect = 0.36
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 16/42 (38%)
Query: 524 KKNTKRLRDVLQQLYGHLDSSAQGGSQHHDSVEIPGLGFGQA 565
K+ K+L+ L +LY D SA P L +A
Sbjct: 19 KQALKKLQASL-KLYA--DDSA------------PALAI-KA 44
Score = 28.8 bits (63), Expect = 3.4
Identities = 9/37 (24%), Positives = 11/37 (29%), Gaps = 16/37 (43%)
Query: 449 KKVQDEFRHHAREKKYALNSFILPHSFGPLVRWLKVN 485
KK+Q K YA S P L +
Sbjct: 23 KKLQASL------KLYA------DDS-APA---LAIK 43
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.014
Identities = 35/188 (18%), Positives = 59/188 (31%), Gaps = 48/188 (25%)
Query: 423 TAMIVPRS-----SQLVSQDQDFA--LYTVTLFKKVQDEFRH----HAREKKYALNSFIL 471
++VP + SQL Q+Q F L T DE + Y ++S +
Sbjct: 18 HVLLVPTASFFIASQL--QEQ-FNKILPEPTEGFAADDEPTTPAELVGKFLGY-VSSLVE 73
Query: 472 PHSFGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVN-FQAMLLHPNKKNTKRL 530
P G + L + L F L G ++ A LL N +
Sbjct: 74 PSKVGQFDQVLNL-------------CLTEFENCYLE-GNDIHALAAKLLQENDTTLVKT 119
Query: 531 RDVLQQLYGHLDSSAQGGSQHHDS-----VEIPGLGF-----GQ---ADYFP-----YVY 572
+++++ + + + +S V GQ DYF Y
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 573 YKINIDML 580
Y + + L
Sbjct: 180 YHVLVGDL 187
Score = 35.8 bits (82), Expect = 0.050
Identities = 73/428 (17%), Positives = 129/428 (30%), Gaps = 158/428 (36%)
Query: 158 EADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLT-----TLLV 212
A+L K Y + S ++ + Q +L L F ++ YL L
Sbjct: 57 PAELVGKFLGY--VSSLVEPSKVGQFDQVLNLCL------TEF--ENCYLEGNDIHALAA 106
Query: 213 VVPRNQVT------EWVQNYEKLTAMIV---PRSSQLVSQDQDFALYTVTLFKKVQDEFR 263
+ + T E ++NY +TA I+ P + S LF+ V +
Sbjct: 107 KLLQENDTTLVKTKELIKNY--ITARIMAKRPFDKKSNS----------ALFRAVGEG-- 152
Query: 264 HHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQFGYATNSLPFLSSDELGN-YITQ 322
+A+ L A FG N+ + +EL + Y T
Sbjct: 153 -NAQ---------------LVA--------------IFGGQGNTDDYF--EELRDLYQT- 179
Query: 323 FQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTR 382
Y L + D+I L + L + EK T L
Sbjct: 180 -------YH---VL--VGDLIK----FSAETL-------SELIRTTLDAEKVFTQGL--- 213
Query: 383 NLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQ----------NYEKLTAMIVPRSSQ 432
N+ + ++ D +YL ++ + P V + +L + + + +
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL--KGAT 271
Query: 433 LVSQDQDFALYTVTLFKKVQ--DEFRHHAREKKYALNSFILPHSFGPLVRWLKVNFSECF 490
SQ L T + + F R+ A+ L F
Sbjct: 272 GHSQG----LVTAVAIAETDSWESFFVSVRK---AI-------------TVL---F---- 304
Query: 491 CAWIHVKALRVF-----VESVLRYGLPVNFQA---ML----LHPNKKNTKRLRDVLQQLY 538
+I V+ + S+L L N ML L ++++D + +
Sbjct: 305 --FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL-----TQEQVQDYVNKTN 357
Query: 539 GHLDSSAQ 546
HL + Q
Sbjct: 358 SHLPAGKQ 365
Score = 34.6 bits (79), Expect = 0.11
Identities = 77/477 (16%), Positives = 141/477 (29%), Gaps = 176/477 (36%)
Query: 58 LGKLDTFVDSVTVGTLDQLVGLSDDLGKLDTFVDSV-----THKVAVYLGEVLEDQRDKL 112
LG + + V+ VG DQ++ L L F + H +A L L++ L
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLC-----LTEFENCYLEGNDIHALAAKL---LQENDTTL 116
Query: 113 AENLMANNNELGNYITQFQWDMAKYPIKQ----SLRNIADIINKQI-----GQ--IEA-- 159
+ NYIT MAK P + +L N Q+ GQ +
Sbjct: 117 V----KTKELIKNYITARI--MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 160 -DLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHF------IL---------- 202
+L+ Y+ L +L K + L+ + + E IL
Sbjct: 171 EELRDLYQTYHVLVGDL----IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 203 DSEYLTTLLVVVPRNQVTEWVQ----------NYEKLTAMIVPRSSQLVSQD-------- 244
D +YL ++ + P V + +L + + + + SQ
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL--KGATGHSQGLVTAVAIA 284
Query: 245 -----QDF---ALYTVT-LFK---KVQDEFRHHAREKKFIVREFVYNEEELAA------G 286
+ F +T LF + + + + + I+ + + N E + +
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS-ILEDSLENNEGVPSPMLSISN 343
Query: 287 --KNEITKLVTDKKKQFGYATN-SLP-----FLSSDELGNYITQF--------------- 323
+ ++ V TN LP +S L N
Sbjct: 344 LTQEQVQDYVN--------KTNSHLPAGKQVEIS---LVNGAKNLVVSGPPQSLYGLNLT 392
Query: 324 --------QWDMAKYPIKQ-----------------S--LRNIADIINKQIGQIEADLKT 356
D ++ P + S L +D+INK + +
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 357 KSSA---YNNLK-SNLQNMEKKQTGSLLTRNLADLVKKE-------------HFILD 396
K Y+ S+L+ + ++ + D + + H ILD
Sbjct: 453 KDIQIPVYDTFDGSDLRVLS-----GSISERIVDCIIRLPVKWETTTQFKATH-ILD 503
Score = 30.0 bits (67), Expect = 2.9
Identities = 50/279 (17%), Positives = 84/279 (30%), Gaps = 116/279 (41%)
Query: 1 MSEY---------WLISAPGDKTCQQTWENL---------NNVTS--------KQNNLSE 34
M Y W ++ + NN + K + E
Sbjct: 1633 MDLYKTSKAAQDVW------NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 35 NY---KFH-IPDLKVGTLDQLVGLSDDLGKLDTFVDSVTVGTLDQ---------LVGLS- 80
NY F I D K+ T +++ TF G L L+ +
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSY-TFRSEK--GLLSATQFTQPALTLMEKAA 1743
Query: 81 -DDL---GKLDTFVDSVT--HKVAVYLGE---------VL--ED------QRDKLAENLM 117
+DL G + D+ H LGE V+ E R + +
Sbjct: 1744 FEDLKSKGLIPA--DATFAGHS----LGEYAALASLADVMSIESLVEVVFYRGMTMQVAV 1797
Query: 118 ANNNELG--NYITQFQWDM-AKYPIK-------QSLRNIADIINK--------------- 152
+ ELG NY M A P + ++L+ + + + K
Sbjct: 1798 PRD-ELGRSNY------GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN 1850
Query: 153 -QI---GQIEADLKTKSSAYNNLKS-NLQNMEKKQTGSL 186
Q G + A L T ++ N +K + +E +++ SL
Sbjct: 1851 QQYVAAGDLRA-LDTVTNVLNFIKLQKIDIIELQKSLSL 1888
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 36.6 bits (85), Expect = 0.020
Identities = 13/98 (13%), Positives = 33/98 (33%)
Query: 274 REFVYNEEELAAGKNEITKLVTDKKKQFGYATNSLPFLSSDELGNYITQFQWDMAKYPIK 333
R + E N +K V KKK ++ + + + +
Sbjct: 47 RRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCV 106
Query: 334 QSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNM 371
L+ ++ ++ Q+ + + + + L N+ N+
Sbjct: 107 LQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNI 144
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 32.0 bits (73), Expect = 0.53
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 3/98 (3%)
Query: 274 REFVYNEEELAAGKNEITKLVTDKKKQFGYATNSLPFLSSDELGNYITQFQWDMAKYPIK 333
R + + L KN +K + +K K+ S E D
Sbjct: 44 RRCRFRADNLNKLKNLCSKTIGEKMKK---KEPVGDDESVPENVLSFDDLTADALANLKV 100
Query: 334 QSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNM 371
++ + +I++ I + +A+ + + N+
Sbjct: 101 SQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNL 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.382
Gapped
Lambda K H
0.267 0.0489 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,613,552
Number of extensions: 500813
Number of successful extensions: 955
Number of sequences better than 10.0: 1
Number of HSP's gapped: 940
Number of HSP's successfully gapped: 20
Length of query: 585
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 486
Effective length of database: 3,937,614
Effective search space: 1913680404
Effective search space used: 1913680404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.5 bits)