RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6086
         (585 letters)



>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 388

 Score =  364 bits (936), Expect = e-122
 Identities = 95/287 (33%), Positives = 156/287 (54%), Gaps = 24/287 (8%)

Query: 315 ELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKK 374
            +  Y+  FQW   K+ + +S++++  +I+ +  Q++AD++   + YN+ K+NL   E+K
Sbjct: 102 PVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERK 161

Query: 375 QTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLV 434
           +TG L  R+L D+VK E F+L+SE+LTT+LV VP++  +++ ++YE L+  +VP S+ ++
Sbjct: 162 KTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVI 221

Query: 435 SQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILP-------------------HSF 475
           ++D ++ L+ V LFKK   EF   AREKK+    F                         
Sbjct: 222 AEDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLR 281

Query: 476 GPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRLRDVLQ 535
             LVR  K  + + F  W H+KALRV+VESVLRYGLP +F   ++    KN  + +  L 
Sbjct: 282 VQLVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPHFNIKIIAVPPKNLSKCKSELI 341

Query: 536 QLYGHLDSSA-----QGGSQHHDSVEIPGLGFGQADYFPYVYYKINI 577
             +G L  +A     +G     D+           +Y P+V Y IN+
Sbjct: 342 DAFGFLGGNAFMKDKKGKINKQDTSLHQYASLVDTEYEPFVMYIINL 388



 Score =  359 bits (922), Expect = e-120
 Identities = 89/304 (29%), Positives = 157/304 (51%), Gaps = 29/304 (9%)

Query: 2   SEYWLISAPGDKTCQQTWENLNN---VTSKQNNLSENYKFHIPDLKVGTLDQLVGLSDDL 58
           +++ LIS P +        +  +     +     +    F IP+ K+G+LD L+  S++L
Sbjct: 5   NDFILISLPQNAQPVTAPGSKTDSWFNETLIGGRAFVSDFKIPEFKIGSLDTLIVESEEL 64

Query: 59  GKLDTFVDSVTVGTLDQLVGLSDDLGKLDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMA 118
            K+D  + +                            K+   L  + E         L  
Sbjct: 65  SKVDNQIGASI-------------------------GKIIEILQGLNETS-TNAYRTLPI 98

Query: 119 NNNELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNM 178
           NN  +  Y+  FQW   K+ + +S++++  +I+ +  Q++AD++   + YN+ K+NL   
Sbjct: 99  NNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAA 158

Query: 179 EKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSS 238
           E+K+TG L  R+L D+VK E F+L+SE+LTT+LV VP++  +++ ++YE L+  +VP S+
Sbjct: 159 ERKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASA 218

Query: 239 QLVSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKK 298
            ++++D ++ L+ V LFKK   EF   AREKKFI REF Y+EE +   K E     + ++
Sbjct: 219 SVIAEDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQ 278

Query: 299 KQFG 302
               
Sbjct: 279 SLRV 282


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0472    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,064,519
Number of extensions: 93966
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 6
Length of query: 585
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 495
Effective length of database: 1,171,896
Effective search space: 580088520
Effective search space used: 580088520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.6 bits)