BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6087
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V7N5|VATC_DROME V-type proton ATPase subunit C OS=Drosophila melanogaster GN=Vha44
PE=2 SV=5
Length = 836
Score = 166 bits (420), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 79/123 (64%), Positives = 101/123 (82%), Gaps = 3/123 (2%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
+GSLLTRNLADLVKKEHFILDSEYLTTLLV+VP+ +W+ NYEK+T MIVPRSSQL+
Sbjct: 607 TGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKVMANDWLTNYEKITDMIVPRSSQLIQ 666
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEEL---RNQVTEWVQNYEKLTA 129
+D D+ L+ VTLFKKV +EF+ HARE+KFIVR+FVYNEEEL +N++T+ + + +K
Sbjct: 667 EDADYCLFNVTLFKKVAEEFKLHARERKFIVRDFVYNEEELAAGKNEMTKLMTDKKKQFG 726
Query: 130 MIV 132
+V
Sbjct: 727 PLV 729
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 78/149 (52%), Gaps = 23/149 (15%)
Query: 19 RNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFA 78
RN+AD++ K+ +D + T N + +QN EK + +
Sbjct: 568 RNIADIISKQIGQIDGDLKTKSQAY---NNLKGNLQNLEK---------------KKTGS 609
Query: 79 LYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELRNQVTEWVQNYEKLTAMIVPRSSQL 138
L T L V+ E H + +++ V + + N +W+ NYEK+T MIVPRSSQL
Sbjct: 610 LLTRNLADLVKKE--HFILDSEYLTTLLVIVPKVMAN---DWLTNYEKITDMIVPRSSQL 664
Query: 139 VSQDQDFALYTVTLFKKVQDEFRHHAREK 167
+ +D D+ L+ VTLFKKV +EF+ HARE+
Sbjct: 665 IQEDADYCLFNVTLFKKVAEEFKLHARER 693
>sp|Q9U5N1|VATC_MANSE V-type proton ATPase subunit C OS=Manduca sexta PE=2 SV=1
Length = 385
Score = 163 bits (412), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/117 (65%), Positives = 98/117 (83%), Gaps = 3/117 (2%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
+GSLLTRNLADLVKKEHFILDSEYLTTLLV+VP++ +W NYEK+T MIVPRS+QL+
Sbjct: 157 TGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKSMFNDWNANYEKITDMIVPRSTQLIH 216
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEEL---RNQVTEWVQNYEK 126
QD D+ L+TVTLFKKV DEF+ HARE+KF+VREF YNE +L +N++T+ + + +K
Sbjct: 217 QDGDYGLFTVTLFKKVVDEFKLHARERKFVVREFAYNEADLVAGKNEITKLLTDKKK 273
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 43/54 (79%)
Query: 114 RNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREK 167
++ +W NYEK+T MIVPRS+QL+ QD D+ L+TVTLFKKV DEF+ HARE+
Sbjct: 190 KSMFNDWNANYEKITDMIVPRSTQLIHQDGDYGLFTVTLFKKVVDEFKLHARER 243
>sp|Q5XH14|VATC1_XENLA V-type proton ATPase subunit C 1 OS=Xenopus laevis GN=atp6v1c1 PE=2
SV=1
Length = 382
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 85/102 (83%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
+GSL+TR+LA++VKK+ F+LDSEYL TLLVVVP+N T+W++ YE L+ M+VPRSS ++S
Sbjct: 158 AGSLITRSLAEIVKKDDFVLDSEYLITLLVVVPKNNYTDWMKEYETLSEMVVPRSSNVLS 217
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELR 114
+DQD L VTLF+K D+FRH ARE KF+VR+F YNEEE++
Sbjct: 218 EDQDSYLCNVTLFRKAVDDFRHKARENKFVVRDFQYNEEEMK 259
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 40/53 (75%)
Query: 114 RNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHARE 166
+N T+W++ YE L+ M+VPRSS ++S+DQD L VTLF+K D+FRH ARE
Sbjct: 191 KNNYTDWMKEYETLSEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKARE 243
>sp|Q6P4Y9|VATC1_XENTR V-type proton ATPase subunit C 1 OS=Xenopus tropicalis GN=atp6v1c1
PE=2 SV=1
Length = 382
Score = 139 bits (350), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 83/102 (81%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
+GSL+TR+LA++VKK+ F+LDSEYL TLLVVVP+N +WV+ YE L M+VPRSS ++S
Sbjct: 158 AGSLITRSLAEIVKKDDFVLDSEYLITLLVVVPKNNYNDWVKQYETLAEMVVPRSSNVLS 217
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELR 114
+DQD L VTLF+K D+FRH ARE KF+VR+F YNEEE++
Sbjct: 218 EDQDSYLCNVTLFRKAVDDFRHKARENKFVVRDFQYNEEEMK 259
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 38/53 (71%)
Query: 114 RNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHARE 166
+N +WV+ YE L M+VPRSS ++S+DQD L VTLF+K D+FRH ARE
Sbjct: 191 KNNYNDWVKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKARE 243
>sp|Q5FVI6|VATC1_RAT V-type proton ATPase subunit C 1 OS=Rattus norvegicus GN=Atp6v1c1
PE=2 SV=1
Length = 382
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/102 (63%), Positives = 82/102 (80%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
+GSLLTR+LA++VKK+ F+LDSEYL TLLVVVP+ +W++ YE L M+VPRSS ++S
Sbjct: 158 AGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLS 217
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELR 114
+DQD L VTLFKK D+FRH ARE KFIVR+F YNEEE+R
Sbjct: 218 EDQDSYLCNVTLFKKAVDDFRHKARENKFIVRDFQYNEEEMR 259
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 36/48 (75%)
Query: 119 EWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHARE 166
+W++ YE L M+VPRSS ++S+DQD L VTLFKK D+FRH ARE
Sbjct: 196 DWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFKKAVDDFRHKARE 243
>sp|Q7T385|VTC1A_DANRE V-type proton ATPase subunit C 1-A OS=Danio rerio GN=atp6v1c1a PE=2
SV=1
Length = 383
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 81/102 (79%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
+GSLLTR+LAD+VKK+ F+LDSEYL TLLVVVP+ T+W + YE L M+VPRS+ L+
Sbjct: 158 AGSLLTRSLADIVKKDDFVLDSEYLITLLVVVPKTNYTDWQRTYETLAEMVVPRSTNLLF 217
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELR 114
+D D L+TVTLF+K D+FRH ARE KF VR+F YNEEE++
Sbjct: 218 EDHDSGLFTVTLFRKAIDDFRHKARENKFTVRDFQYNEEEMK 259
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 36/49 (73%)
Query: 118 TEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHARE 166
T+W + YE L M+VPRS+ L+ +D D L+TVTLF+K D+FRH ARE
Sbjct: 195 TDWQRTYETLAEMVVPRSTNLLFEDHDSGLFTVTLFRKAIDDFRHKARE 243
>sp|P21282|VATC1_BOVIN V-type proton ATPase subunit C 1 OS=Bos taurus GN=ATP6V1C1 PE=1
SV=3
Length = 382
Score = 135 bits (341), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 82/102 (80%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
+GSLLTR+LA++VKK+ F+LDSEYL TLLVVVP+ +W++ YE L M+VPRSS ++S
Sbjct: 158 AGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLS 217
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELR 114
+DQD L VTLF+K D+FRH ARE KFIVR+F YNEEE++
Sbjct: 218 EDQDSYLCNVTLFRKAVDDFRHKARENKFIVRDFQYNEEEMK 259
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 36/48 (75%)
Query: 119 EWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHARE 166
+W++ YE L M+VPRSS ++S+DQD L VTLF+K D+FRH ARE
Sbjct: 196 DWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKARE 243
>sp|Q9Z1G3|VATC1_MOUSE V-type proton ATPase subunit C 1 OS=Mus musculus GN=Atp6v1c1 PE=1
SV=4
Length = 382
Score = 135 bits (341), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 82/102 (80%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
+GSLLTR+LA++VKK+ F+LDSEYL TLLVVVP+ +W++ YE L M+VPRSS ++S
Sbjct: 158 AGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLS 217
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELR 114
+DQD L VTLF+K D+FRH ARE KFIVR+F YNEEE++
Sbjct: 218 EDQDSYLCNVTLFRKAVDDFRHKARENKFIVRDFQYNEEEMK 259
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 36/48 (75%)
Query: 119 EWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHARE 166
+W++ YE L M+VPRSS ++S+DQD L VTLF+K D+FRH ARE
Sbjct: 196 DWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKARE 243
>sp|Q5RDQ7|VATC1_PONAB V-type proton ATPase subunit C 1 OS=Pongo abelii GN=ATP6V1C1 PE=2
SV=1
Length = 382
Score = 135 bits (341), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 82/102 (80%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
+GSLLTR+LA++VKK+ F+LDSEYL TLLVVVP+ +W++ YE L M+VPRSS ++S
Sbjct: 158 AGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLS 217
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELR 114
+DQD L VTLF+K D+FRH ARE KFIVR+F YNEEE++
Sbjct: 218 EDQDSYLCNVTLFRKAVDDFRHKARENKFIVRDFQYNEEEMK 259
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 36/48 (75%)
Query: 119 EWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHARE 166
+W++ YE L M+VPRSS ++S+DQD L VTLF+K D+FRH ARE
Sbjct: 196 DWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKARE 243
>sp|Q4R5H9|VATC1_MACFA V-type proton ATPase subunit C 1 OS=Macaca fascicularis GN=ATP6V1C1
PE=2 SV=1
Length = 382
Score = 135 bits (341), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 82/102 (80%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
+GSLLTR+LA++VKK+ F+LDSEYL TLLVVVP+ +W++ YE L M+VPRSS ++S
Sbjct: 158 AGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLS 217
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELR 114
+DQD L VTLF+K D+FRH ARE KFIVR+F YNEEE++
Sbjct: 218 EDQDSYLCNVTLFRKAVDDFRHKARENKFIVRDFQYNEEEMK 259
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 36/48 (75%)
Query: 119 EWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHARE 166
+W++ YE L M+VPRSS ++S+DQD L VTLF+K D+FRH ARE
Sbjct: 196 DWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKARE 243
>sp|P21283|VATC1_HUMAN V-type proton ATPase subunit C 1 OS=Homo sapiens GN=ATP6V1C1 PE=1
SV=4
Length = 382
Score = 135 bits (341), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 82/102 (80%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
+GSLLTR+LA++VKK+ F+LDSEYL TLLVVVP+ +W++ YE L M+VPRSS ++S
Sbjct: 158 AGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLS 217
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELR 114
+DQD L VTLF+K D+FRH ARE KFIVR+F YNEEE++
Sbjct: 218 EDQDSYLCNVTLFRKAVDDFRHKARENKFIVRDFQYNEEEMK 259
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 36/48 (75%)
Query: 119 EWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHARE 166
+W++ YE L M+VPRSS ++S+DQD L VTLF+K D+FRH ARE
Sbjct: 196 DWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKARE 243
>sp|Q9XXU9|VATC_CAEEL V-type proton ATPase subunit C OS=Caenorhabditis elegans GN=vha-11
PE=2 SV=1
Length = 384
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 86/106 (81%)
Query: 14 GSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQ 73
GSLLT++LADLVK + F+L+SEYL T++VVVP+ V EW Q Y L++M+VP SS+L+++
Sbjct: 161 GSLLTKDLADLVKADDFVLNSEYLQTVIVVVPKISVKEWEQKYATLSSMVVPGSSKLLTE 220
Query: 74 DQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELRNQVTE 119
+ + ALYTVTLFKKV DEF++ ARE KFIVR+FVY+EE L+ TE
Sbjct: 221 EGEHALYTVTLFKKVIDEFKNTARENKFIVRDFVYDEETLKAGRTE 266
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 8/70 (11%)
Query: 105 EFVYNEEELRN--------QVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKV 156
+FV N E L+ V EW Q Y L++M+VP SS+L++++ + ALYTVTLFKKV
Sbjct: 176 DFVLNSEYLQTVIVVVPKISVKEWEQKYATLSSMVVPGSSKLLTEEGEHALYTVTLFKKV 235
Query: 157 QDEFRHHARE 166
DEF++ ARE
Sbjct: 236 IDEFKNTARE 245
>sp|Q612A4|VATC_CAEBR V-type proton ATPase subunit C OS=Caenorhabditis briggsae GN=vha-11
PE=3 SV=1
Length = 385
Score = 133 bits (334), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 86/107 (80%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
+GSLLT++LADLVK E F+L+SEYL T++VVVP+ V EW Y L++M+VP SS+L++
Sbjct: 161 TGSLLTKDLADLVKAEDFVLNSEYLQTIIVVVPKILVKEWETKYATLSSMVVPGSSKLLT 220
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELRNQVTE 119
++ + ALYTVTLFKKV DEF++ ARE KFIVR+FVY+EE L+ TE
Sbjct: 221 EEGEHALYTVTLFKKVIDEFKNIARENKFIVRDFVYDEETLKAGRTE 267
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 8/70 (11%)
Query: 105 EFVYNEEELRN--------QVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKV 156
+FV N E L+ V EW Y L++M+VP SS+L++++ + ALYTVTLFKKV
Sbjct: 177 DFVLNSEYLQTIIVVVPKILVKEWETKYATLSSMVVPGSSKLLTEEGEHALYTVTLFKKV 236
Query: 157 QDEFRHHARE 166
DEF++ ARE
Sbjct: 237 IDEFKNIARE 246
>sp|Q5XIY6|VTC1B_DANRE V-type proton ATPase subunit C 1-B OS=Danio rerio GN=atp6v1c1b PE=2
SV=1
Length = 381
Score = 133 bits (334), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 82/101 (81%)
Query: 14 GSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQ 73
GSLLTR+LAD+VKKE F+LDSEYLTTLLV+V + EW + YE L+ M+VPRS++L+ +
Sbjct: 159 GSLLTRSLADIVKKEDFVLDSEYLTTLLVIVSKTNYPEWQKTYETLSEMVVPRSTKLLFE 218
Query: 74 DQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELR 114
DQ+ L++VTLF K D+F+ ARE KF+VR+F+YNEEE++
Sbjct: 219 DQESGLFSVTLFTKAIDDFKQQARENKFMVRDFLYNEEEMK 259
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 36/48 (75%)
Query: 119 EWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHARE 166
EW + YE L+ M+VPRS++L+ +DQ+ L++VTLF K D+F+ ARE
Sbjct: 196 EWQKTYETLSEMVVPRSTKLLFEDQESGLFSVTLFTKAIDDFKQQARE 243
>sp|Q99L60|VATC2_MOUSE V-type proton ATPase subunit C 2 OS=Mus musculus GN=Atp6v1c2 PE=2
SV=1
Length = 427
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 77/97 (79%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
+G+L TR L+D+V KE F+LDSEYL TLLV+VP++ +W + YE L+ M+VPRS++L++
Sbjct: 157 TGNLFTRTLSDIVSKEDFVLDSEYLITLLVIVPKSSFAQWQKTYESLSDMVVPRSTKLIA 216
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYN 109
+D + L+TVTLF+KV ++F+ A+E KFIVREF Y+
Sbjct: 217 EDNEGGLFTVTLFRKVIEDFKVKAKENKFIVREFYYD 253
>sp|Q6AYE4|VATC2_RAT V-type proton ATPase subunit C 2 OS=Rattus norvegicus GN=Atp6v1c2
PE=2 SV=1
Length = 425
Score = 119 bits (298), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 77/97 (79%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
+G+L TR L+D+V KE F+LDSEYL TLLV+VP++ +W + YE L+ M+VPRS++L++
Sbjct: 157 TGNLFTRTLSDIVSKEDFVLDSEYLITLLVIVPKSSYVQWQKTYESLSDMVVPRSTKLIA 216
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYN 109
+D + L+TVTLF+KV ++F+ A+E KFIVREF Y+
Sbjct: 217 EDNEGGLFTVTLFRKVIEDFKVKAKENKFIVREFYYD 253
>sp|Q8NEY4|VATC2_HUMAN V-type proton ATPase subunit C 2 OS=Homo sapiens GN=ATP6V1C2 PE=2
SV=2
Length = 427
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 76/96 (79%)
Query: 14 GSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQ 73
G+L TR L+D+V KE F+LDSEYL TLLV+VP+ ++W + YE L+ M+VPRS++L+++
Sbjct: 158 GNLFTRTLSDIVSKEDFVLDSEYLVTLLVIVPKPNYSQWQKTYESLSDMVVPRSTKLITE 217
Query: 74 DQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYN 109
D++ L+TVTLF+KV ++F+ A+E KF VREF Y+
Sbjct: 218 DKEGGLFTVTLFRKVIEDFKTKAKENKFTVREFYYD 253
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 40/49 (81%)
Query: 118 TEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHARE 166
++W + YE L+ M+VPRS++L+++D++ L+TVTLF+KV ++F+ A+E
Sbjct: 194 SQWQKTYESLSDMVVPRSTKLITEDKEGGLFTVTLFRKVIEDFKTKAKE 242
>sp|Q9NDR5|VATC_ASCSS V-type proton ATPase subunit C 2 OS=Ascidia sydneiensis samea
GN=VATC PE=2 SV=1
Length = 384
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 72/100 (72%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
+GSLL RNL+ +VKK+ FI SEYL T++V VP EW +NYE L + P+SS+L++
Sbjct: 159 TGSLLLRNLSQIVKKDDFIDGSEYLRTVIVAVPVALFGEWEKNYESLADYVAPKSSRLLT 218
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEE 112
QD+++ L+ ++FKKV +EF+++ KF VREF +NE++
Sbjct: 219 QDEEYGLFATSIFKKVYEEFKYNCSRYKFFVREFNFNEQD 258
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 8/68 (11%)
Query: 105 EFVYNEEELRNQV--------TEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKV 156
+F+ E LR + EW +NYE L + P+SS+L++QD+++ L+ ++FKKV
Sbjct: 175 DFIDGSEYLRTVIVAVPVALFGEWEKNYESLADYVAPKSSRLLTQDEEYGLFATSIFKKV 234
Query: 157 QDEFRHHA 164
+EF+++
Sbjct: 235 YEEFKYNC 242
>sp|Q9SDS7|VATC_ARATH V-type proton ATPase subunit C OS=Arabidopsis thaliana GN=VHA-C
PE=1 SV=1
Length = 375
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 83/123 (67%), Gaps = 4/123 (3%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
SGSL R+L++LVK E I++SE+L TLL VVP+ +W+ YE LT +VPRSS+ +
Sbjct: 158 SGSLAVRDLSNLVKPED-IVESEHLVTLLAVVPKYSQKDWLACYETLTDYVVPRSSKKLF 216
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREF---VYNEEELRNQVTEWVQNYEKLTA 129
+D ++ALYTVTLF +V D FR AREK F VR+F V +E + ++ + VQ+ E L +
Sbjct: 217 EDNEYALYTVTLFTRVADNFRIAAREKGFQVRDFEQSVEAQETRKQELAKLVQDQESLRS 276
Query: 130 MIV 132
++
Sbjct: 277 SLL 279
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 36/50 (72%)
Query: 119 EWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKN 168
+W+ YE LT +VPRSS+ + +D ++ALYTVTLF +V D FR AREK
Sbjct: 195 DWLACYETLTDYVVPRSSKKLFEDNEYALYTVTLFTRVADNFRIAAREKG 244
>sp|Q9SCB9|VATC_HORVU V-type proton ATPase subunit C OS=Hordeum vulgare GN=VATC PE=1 SV=1
Length = 354
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
+GSL R+L++L+K E + SE+L TLL +VP+ +W+ +YE L +VPRSS+ +
Sbjct: 163 TGSLAVRDLSNLIKPEDMVT-SEHLVTLLSIVPKYSQKDWLASYESLDTFVVPRSSKKLY 221
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEE 111
+D ++ALYTVTLF KV D F+ HAREK F +R+F Y+ E
Sbjct: 222 EDNEYALYTVTLFAKVVDNFKVHAREKGFQIRDFEYSPE 260
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 37/50 (74%)
Query: 119 EWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKN 168
+W+ +YE L +VPRSS+ + +D ++ALYTVTLF KV D F+ HAREK
Sbjct: 200 DWLASYESLDTFVVPRSSKKLYEDNEYALYTVTLFAKVVDNFKVHAREKG 249
>sp|P31412|VATC_YEAST V-type proton ATPase subunit C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=VMA5 PE=1 SV=4
Length = 392
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 72/99 (72%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
+G L R+L D+VK E F+L+SE+LTT+LV VP++ +++ ++YE L+ +VP S+ +++
Sbjct: 167 TGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIA 226
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEE 111
+D ++ L+ V LFKK EF AREKKFI REF Y+EE
Sbjct: 227 EDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEE 265
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 105 EFVYNEEEL--------RNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKV 156
+FV N E L ++ +++ ++YE L+ +VP S+ ++++D ++ L+ V LFKK
Sbjct: 183 DFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFKKN 242
Query: 157 QDEFRHHAREK 167
EF AREK
Sbjct: 243 VQEFTTAAREK 253
>sp|Q9HDW6|VATC_SCHPO V-type proton ATPase subunit C OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=vma5 PE=1 SV=1
Length = 394
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
SG+L ++LA++V +E + S+YLT + + VP N +++ +YE LT +++PRS++ +
Sbjct: 163 SGNLSQKSLANIVHEEDVVHGSDYLTNVFIAVPLNLEKQFLNSYETLTDLVIPRSAKKLD 222
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELR 114
QD +F LYTV +FKK D F ARE K+ +REF + E+ LR
Sbjct: 223 QDSEFVLYTVVVFKKTADSFITKAREAKYTIREFTF-EQGLR 263
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 119 EWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHARE 166
+++ +YE LT +++PRS++ + QD +F LYTV +FKK D F ARE
Sbjct: 201 QFLNSYETLTDLVIPRSAKKLDQDSEFVLYTVVVFKKTADSFITKARE 248
>sp|P54648|VATC_DICDI V-type proton ATPase subunit C OS=Dictyostelium discoideum GN=vatC
PE=2 SV=1
Length = 368
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
SG+L R L DL+ ++ I+ ++Y TT VV+P+ E++ YE ++ ++ RS++ V+
Sbjct: 159 SGNLQVRTLNDLITADN-IVQTDYFTTAFVVIPKQSEKEFLACYETISDFVLGRSAKRVA 217
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREF 106
QD D+ LY+V LFKK + F+ EKK++VR+F
Sbjct: 218 QDNDYFLYSVILFKKFYENFKTKIIEKKWVVRDF 251
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 119 EWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREK 167
E++ YE ++ ++ RS++ V+QD D+ LY+V LFKK + F+ EK
Sbjct: 196 EFLACYETISDFVLGRSAKRVAQDNDYFLYSVILFKKFYENFKTKIIEK 244
>sp|Q1GIN9|NUOD_RUEST NADH-quinone oxidoreductase subunit D OS=Ruegeria sp. (strain
TM1040) GN=nuoD PE=3 SV=1
Length = 403
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
IV+ +P LL R L++ ++ + Y L V P NQ W EKLT +
Sbjct: 42 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 101
Query: 64 VPRSSQLV 71
VPR +QL+
Sbjct: 102 VPRRAQLI 109
>sp|A1B495|NUOD_PARDP NADH-quinone oxidoreductase subunit D OS=Paracoccus denitrificans
(strain Pd 1222) GN=nuoD PE=1 SV=1
Length = 412
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
IV+ ++P LL R L++ ++ + YL L V P NQ W E+LT +
Sbjct: 50 GEIVERADPHIGLLHRGTEKLMESRTYLQNLPYLDRLDYVAPMNQEHAWCLAIERLTGTV 109
Query: 64 VPRSSQLV 71
+PR + L+
Sbjct: 110 IPRRASLI 117
>sp|P29916|NQO4_PARDE NADH-quinone oxidoreductase subunit 4 OS=Paracoccus denitrificans
GN=nqo4 PE=1 SV=1
Length = 412
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
IV+ ++P LL R L++ ++ + YL L V P NQ W E+LT +
Sbjct: 50 GEIVERADPHIGLLHRGTEKLMESRTYLQNLPYLDRLDYVAPMNQEHAWCLAIERLTGTV 109
Query: 64 VPRSSQLV 71
+PR + L+
Sbjct: 110 IPRRASLI 117
>sp|A8LIT9|NUOD_DINSH NADH-quinone oxidoreductase subunit D OS=Dinoroseobacter shibae
(strain DFL 12) GN=nuoD PE=3 SV=1
Length = 404
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
IV+ +P LL R L++ ++ + Y L V P NQ W EKLT +
Sbjct: 43 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGTV 102
Query: 64 VPRSSQLV 71
VPR L+
Sbjct: 103 VPRRGSLI 110
>sp|O07310|NUOD_RHOCA NADH-quinone oxidoreductase subunit D OS=Rhodobacter capsulatus
GN=nuoD PE=3 SV=2
Length = 413
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
IV+ ++P LL R L++ ++ ++ Y L V P NQ W EKLT
Sbjct: 50 GEIVERADPHIGLLHRGTEKLMESRTYLQNTPYFDRLDYVAPMNQEHAWCLAIEKLTGTA 109
Query: 64 VPRSSQLV 71
VPR + ++
Sbjct: 110 VPRRASII 117
>sp|Q5LPR7|NUOD_RUEPO NADH-quinone oxidoreductase subunit D OS=Ruegeria pomeroyi (strain
ATCC 700808 / DSM 15171 / DSS-3) GN=nuoD PE=3 SV=1
Length = 405
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
IV+ +P LL R L++ ++ + Y L V P NQ W EKLT +
Sbjct: 44 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 103
Query: 64 VPRSSQLV 71
VPR + L+
Sbjct: 104 VPRRASLI 111
>sp|Q163Q5|NUOD_ROSDO NADH-quinone oxidoreductase subunit D OS=Roseobacter denitrificans
(strain ATCC 33942 / OCh 114) GN=nuoD PE=3 SV=1
Length = 407
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
IV+ +P LL R L++ ++ + Y L V P NQ W EKLT +
Sbjct: 44 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 103
Query: 64 VPRSSQLV 71
VPR + L+
Sbjct: 104 VPRRASLI 111
>sp|Q3J3F8|NUOD_RHOS4 NADH-quinone oxidoreductase subunit D OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=nuoD PE=3 SV=1
Length = 404
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
+V+ +P LL R L++ ++ + Y L V P NQ W E+LT +
Sbjct: 43 GEVVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIERLTGVA 102
Query: 64 VPRSSQLV 71
VPR + L+
Sbjct: 103 VPRRASLI 110
>sp|A3PIX1|NUOD_RHOS1 NADH-quinone oxidoreductase subunit D OS=Rhodobacter sphaeroides
(strain ATCC 17029 / ATH 2.4.9) GN=nuoD PE=3 SV=1
Length = 402
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
+V+ +P LL R L++ ++ + Y L V P NQ W E+LT +
Sbjct: 41 GEVVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIERLTGVA 100
Query: 64 VPRSSQLV 71
VPR + L+
Sbjct: 101 VPRRASLI 108
>sp|A4WU31|NUOD_RHOS5 NADH-quinone oxidoreductase subunit D OS=Rhodobacter sphaeroides
(strain ATCC 17025 / ATH 2.4.3) GN=nuoD PE=3 SV=1
Length = 402
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
+V+ +P LL R L++ ++ + Y L V P NQ W E+LT +
Sbjct: 41 GEVVERCDPHIGLLHRGTEKLMETRTYLQNLPYFDRLDYVAPMNQEHAWCLAIERLTGVQ 100
Query: 64 VPRSSQLV 71
VPR + L+
Sbjct: 101 VPRRASLI 108
>sp|B2ILG7|NUOD2_BEII9 NADH-quinone oxidoreductase subunit D 2 OS=Beijerinckia indica
subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)
GN=nuoD2 PE=3 SV=1
Length = 396
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
+V+ ++P LL R L++ ++ Y L V P NQ + EKL M
Sbjct: 32 GEVVERADPHIGLLHRGTEKLIEYRTYLQALPYFDRLDYVAPMNQEHAFCLAIEKLLQMP 91
Query: 64 VPRSSQLV 71
VPR QL+
Sbjct: 92 VPRRGQLI 99
>sp|Q6N5M5|NUOD_RHOPA NADH-quinone oxidoreductase subunit D OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=nuoD PE=3 SV=1
Length = 402
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
+V+ +P LL R L++++ ++ Y L V P NQ + EKL +
Sbjct: 38 GEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAVEKLLGIA 97
Query: 64 VPRSSQLV 71
VPR +QL+
Sbjct: 98 VPRRAQLI 105
>sp|B3Q7N3|NUOD_RHOPT NADH-quinone oxidoreductase subunit D OS=Rhodopseudomonas palustris
(strain TIE-1) GN=nuoD PE=3 SV=1
Length = 402
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
+V+ +P LL R L++++ ++ Y L V P NQ + EKL +
Sbjct: 38 GEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAVEKLLGIA 97
Query: 64 VPRSSQLV 71
VPR +QL+
Sbjct: 98 VPRRAQLI 105
>sp|Q1QL87|NUOD2_NITHX NADH-quinone oxidoreductase subunit D 2 OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=nuoD2 PE=3 SV=1
Length = 402
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
+V+ +P LL R L++++ ++ Y L V P NQ + EKL +
Sbjct: 38 GEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIA 97
Query: 64 VPRSSQLV 71
VPR QL+
Sbjct: 98 VPRRGQLI 105
>sp|Q07NM3|NUOD_RHOP5 NADH-quinone oxidoreductase subunit D OS=Rhodopseudomonas
palustris (strain BisA53) GN=nuoD PE=3 SV=1
Length = 396
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
+V+ +P LL R L++++ ++ Y L V P NQ + EKL +
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIA 91
Query: 64 VPRSSQLV 71
VPR +QL+
Sbjct: 92 VPRRAQLI 99
>sp|A1USX0|NUOD_BARBK NADH-quinone oxidoreductase subunit D OS=Bartonella bacilliformis
(strain ATCC 35685 / KC583) GN=nuoD PE=3 SV=1
Length = 396
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
+V+ +P LL R L++ + ++ YL L V P NQ +V EKL +
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAVEKLLGVE 91
Query: 64 VPRSSQLV 71
VP+ QL+
Sbjct: 92 VPKRGQLI 99
>sp|Q6G391|NUOD_BARHE NADH-quinone oxidoreductase subunit D OS=Bartonella henselae
(strain ATCC 49882 / Houston 1) GN=nuoD PE=3 SV=1
Length = 396
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
+V+ +P LL R L++ + ++ YL L V P NQ +V EKL +
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAIEKLLGVE 91
Query: 64 VPRSSQLV 71
VP+ QL+
Sbjct: 92 VPKRGQLI 99
>sp|B6JGW3|NUOD_OLICO NADH-quinone oxidoreductase subunit D OS=Oligotropha
carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)
GN=nuoD PE=3 SV=1
Length = 405
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
+V+ +P LL R L++++ ++ Y L V P NQ + EKL +
Sbjct: 41 GEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIT 100
Query: 64 VPRSSQLV 71
VPR QL+
Sbjct: 101 VPRRGQLI 108
>sp|A9W1N0|NUOD_METEP NADH-quinone oxidoreductase subunit D OS=Methylobacterium
extorquens (strain PA1) GN=nuoD PE=3 SV=1
Length = 396
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
+V+ +P LL R L++ + ++ + Y L V P NQ + E+L +
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEHKTYLQATPYFDRLDYVAPMNQEHAFCLAIERLAGIE 91
Query: 64 VPRSSQLV 71
VPR +QL+
Sbjct: 92 VPRRAQLI 99
>sp|Q135X7|NUOD_RHOPS NADH-quinone oxidoreductase subunit D OS=Rhodopseudomonas palustris
(strain BisB5) GN=nuoD PE=3 SV=1
Length = 416
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
+V+ +P LL R L++ + ++ Y L V P NQ + EKL +
Sbjct: 52 GEVVERVDPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVAPMNQEHAFCLAVEKLLGIA 111
Query: 64 VPRSSQLV 71
VPR +QL+
Sbjct: 112 VPRRAQLI 119
>sp|B1LUN4|NUOD_METRJ NADH-quinone oxidoreductase subunit D OS=Methylobacterium
radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)
GN=nuoD PE=3 SV=1
Length = 396
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
+V+ +P LL R L++ + ++ + Y L V P NQ + EKL +
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEYKTYLQATPYFDRLDYVSPMNQEHAFCLAIEKLAGIE 91
Query: 64 VPRSSQLV 71
VPR +QL+
Sbjct: 92 VPRRAQLI 99
>sp|Q3SRE6|NUOD_NITWN NADH-quinone oxidoreductase subunit D OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=nuoD PE=3 SV=1
Length = 402
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
+V+ +P LL R L++++ ++ Y L V P NQ + E+L +
Sbjct: 38 GEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAERLLGIA 97
Query: 64 VPRSSQLV 71
VPR QL+
Sbjct: 98 VPRRGQLI 105
>sp|Q89KI9|NUOD_BRAJA NADH-quinone oxidoreductase subunit D OS=Bradyrhizobium japonicum
(strain USDA 110) GN=nuoD PE=3 SV=1
Length = 398
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
IV +P LL R L++++ ++ Y L V P NQ + EKL +
Sbjct: 34 GEIVARVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIE 93
Query: 64 VPRSSQLV 71
VPR QL+
Sbjct: 94 VPRRGQLI 101
>sp|A9IUP7|NUOD_BART1 NADH-quinone oxidoreductase subunit D OS=Bartonella tribocorum
(strain CIP 105476 / IBS 506) GN=nuoD PE=3 SV=1
Length = 396
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
+V+ +P LL R L++ + ++ YL L V P NQ +V EKL +
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAIEKLLNIK 91
Query: 64 VPRSSQLV 71
VP+ QL+
Sbjct: 92 VPKRGQLI 99
>sp|Q215I0|NUOD_RHOPB NADH-quinone oxidoreductase subunit D OS=Rhodopseudomonas
palustris (strain BisB18) GN=nuoD PE=3 SV=1
Length = 396
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
IV+ +P LL R L++ + ++ Y L V P NQ + EKL +
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIEAKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLDIA 91
Query: 64 VPRSSQLV 71
VPR +QL+
Sbjct: 92 VPRRAQLI 99
>sp|B1ZA43|NUOD_METPB NADH-quinone oxidoreductase subunit D OS=Methylobacterium populi
(strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=nuoD
PE=3 SV=1
Length = 396
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
+V+ +P LL R L++ + ++ + Y L V P NQ + E+L +
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEHKTYLQATPYFDRLDYVSPMNQEHAFCLAIERLAGIE 91
Query: 64 VPRSSQLV 71
VPR +QL+
Sbjct: 92 VPRRAQLI 99
>sp|Q28T72|NUOD_JANSC NADH-quinone oxidoreductase subunit D OS=Jannaschia sp. (strain
CCS1) GN=nuoD PE=3 SV=1
Length = 412
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
I + +P LL R L++ ++ + Y L V NQ W E++T
Sbjct: 51 GEICERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVGTMNQEHAWCLAIERMTGTD 110
Query: 64 VPRSSQLV 71
VPR +QL+
Sbjct: 111 VPRRAQLI 118
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,224,318
Number of Sequences: 539616
Number of extensions: 2016167
Number of successful extensions: 6926
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 6791
Number of HSP's gapped (non-prelim): 161
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)