Query psy6087
Match_columns 168
No_of_seqs 177 out of 332
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 17:16:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03223 V-ATPase_C: V-ATPase 100.0 6.8E-47 1.5E-51 336.1 9.9 117 2-120 147-263 (371)
2 KOG2909|consensus 100.0 1.4E-44 3.1E-49 317.7 7.1 128 2-131 150-277 (381)
3 COG5127 Vacuolar H+-ATPase V1 100.0 4.9E-34 1.1E-38 248.9 5.4 127 2-130 148-274 (383)
4 PF03223 V-ATPase_C: V-ATPase 99.8 7.6E-20 1.6E-24 163.2 6.1 55 114-168 189-243 (371)
5 KOG2909|consensus 99.7 4.8E-18 1.1E-22 150.4 4.9 64 105-168 175-246 (381)
6 COG5127 Vacuolar H+-ATPase V1 99.3 2.2E-12 4.7E-17 113.7 4.6 55 114-168 190-244 (383)
7 PF04913 Baculo_Y142: Baculovi 40.7 9.5 0.00021 35.9 0.1 44 85-129 238-281 (453)
8 PF05679 CHGN: Chondroitin N-a 34.9 3.1E+02 0.0067 25.7 9.1 118 17-167 228-365 (499)
9 KOG1016|consensus 34.7 69 0.0015 33.1 4.9 42 15-66 296-337 (1387)
10 PF08727 P3A: Poliovirus 3A pr 23.8 42 0.00091 23.2 1.0 16 90-105 30-45 (57)
11 PF00176 SNF2_N: SNF2 family N 22.1 1.2E+02 0.0027 24.5 3.7 23 39-61 60-82 (299)
No 1
>PF03223 V-ATPase_C: V-ATPase subunit C; InterPro: IPR004907 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C subunit that is part of the V1 complex, and is localised to the interface between the V1 and V0 complexes []. This subunit does not show any homology with F-ATPase subunits. The C subunit plays an essential role in controlling the assembly of V-ATPase, acting as a flexible stator that holds together the catalytic (V1) and membrane (V0) sectors of the enzyme []. The release of subunit C from the ATPase complex results in the dissociation of the V1 and V0 subcomplexes, which is an important mechanism in controlling V-ATPase activity in cells. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033180 proton-transporting V-type ATPase, V1 domain; PDB: 1U7L_A.
Probab=100.00 E-value=6.8e-47 Score=336.14 Aligned_cols=117 Identities=55% Similarity=0.939 Sum_probs=91.8
Q ss_pred cccccccccCCCCCccccccccccCCCCccccCcceeEEEEEecCCCHHHHHHhhhhhcCccccCCccceeecCCeeeEE
Q psy6087 2 NFNTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYT 81 (168)
Q Consensus 2 ~~~~~~~~Rk~~GnL~~r~L~dvV~~e~~v~dsEyLtTl~V~VPk~~~~~w~~~YE~l~~~VVPrSs~~i~eD~e~~L~~ 81 (168)
+++++. ||++|||++|||++||+|+|||+|||||||++|||||++++||+++||+|++|||||||++|++|+||+||+
T Consensus 147 ~l~~~~--RK~~GnL~~rsL~~iV~~ed~v~dSEyL~Tl~VvVPk~~~~ewl~~YEtL~~~VVPrSs~~i~eD~ey~L~~ 224 (371)
T PF03223_consen 147 NLQALE--RKQTGNLSVRSLSDIVKPEDFVLDSEYLTTLLVVVPKNSVKEWLKSYETLTDMVVPRSSKKIAEDSEYVLFS 224 (371)
T ss_dssp HHHHHH--HHT-S-TTTS--TTT--GGGS--S-SSEEEEEEEEEGGGHHHHHHHGGGSSTTB-TT--EEEEE-SSEEEEE
T ss_pred HHHHHh--hhccCccccccHHhhCCHHhcccccccceEEEEEechhhHHHHHHHHhccCCccCCChHHhhhcCCCeEEEE
Confidence 356666 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeechHHHHHHHHHhcCCeeEEEeechhhhhhhHHHH
Q psy6087 82 VTLFKKVQDEFRHHAREKKFIVREFVYNEEELRNQVTEW 120 (168)
Q Consensus 82 V~lFkk~v~~F~~~~re~kf~vRdF~y~ee~~~sskKEw 120 (168)
|||||+++++|+++|||+||+||||+|+|+.++..++|.
T Consensus 225 VtlFkk~~~eF~~~~re~kf~vRdF~y~ee~~~~~~~e~ 263 (371)
T PF03223_consen 225 VTLFKKVVDEFKNKCREKKFIVRDFKYDEEESEEEKEER 263 (371)
T ss_dssp EEEEGGGHHHHHHHHHHTT-EEE-----HHHHHHHHHHH
T ss_pred EEEEeccHHHHHHHHHHcCCeeeecccCHHHHHHHHHHH
Confidence 999999999999999999999999999999887655444
No 2
>KOG2909|consensus
Probab=100.00 E-value=1.4e-44 Score=317.68 Aligned_cols=128 Identities=52% Similarity=0.846 Sum_probs=121.2
Q ss_pred cccccccccCCCCCccccccccccCCCCccccCcceeEEEEEecCCCHHHHHHhhhhhcCccccCCccceeecCCeeeEE
Q psy6087 2 NFNTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYT 81 (168)
Q Consensus 2 ~~~~~~~~Rk~~GnL~~r~L~dvV~~e~~v~dsEyLtTl~V~VPk~~~~~w~~~YE~l~~~VVPrSs~~i~eD~e~~L~~ 81 (168)
|+|+|. ||++|||++|||++||+|||||+|||||+||+|||||.+++||+++||||++||||||+++|.||.||.||+
T Consensus 150 nl~nle--rK~~GsL~~rsL~~IVk~edfvl~SEyL~tllVvVPK~~~~df~~~YEtlsd~VvPrSskki~eD~Ey~Lf~ 227 (381)
T KOG2909|consen 150 NLQNLE--RKKTGSLSTRSLADIVKKEDFVLDSEYLTTLLVVVPKALVKDFLKSYETLSDMVVPRSSKKINEDAEYVLFT 227 (381)
T ss_pred HHHHHh--hhccCChhhhhHHHhCCchhhccchhhheeEEEEeeccchHHHHHHHHhhccccchhhhhhcccccceEEEE
Confidence 678888 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeechHHHHHHHHHhcCCeeEEEeechhhhhhhHHHHHHhhhhhcCce
Q psy6087 82 VTLFKKVQDEFRHHAREKKFIVREFVYNEEELRNQVTEWVQNYEKLTAMI 131 (168)
Q Consensus 82 V~lFkk~v~~F~~~~re~kf~vRdF~y~ee~~~sskKEw~~~Ye~l~~~V 131 (168)
|+||||.+|+|+++|||+||+||||.|+++.++..++|+-..-+....|-
T Consensus 228 V~lFkk~~edFr~~ArE~kF~vRdF~y~ee~~e~~k~E~~ra~~~~k~~~ 277 (381)
T KOG2909|consen 228 VTLFKKVAEDFRTKAREKKFIVRDFDYNEEEIETEKAEMDRAATDKKSMR 277 (381)
T ss_pred EEEeehhHHHHHHHHHHcCCceeeccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877665554443
No 3
>COG5127 Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion]
Probab=100.00 E-value=4.9e-34 Score=248.94 Aligned_cols=127 Identities=35% Similarity=0.545 Sum_probs=121.0
Q ss_pred cccccccccCCCCCccccccccccCCCCccccCcceeEEEEEecCCCHHHHHHhhhhhcCccccCCccceeecCCeeeEE
Q psy6087 2 NFNTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYT 81 (168)
Q Consensus 2 ~~~~~~~~Rk~~GnL~~r~L~dvV~~e~~v~dsEyLtTl~V~VPk~~~~~w~~~YE~l~~~VVPrSs~~i~eD~e~~L~~ 81 (168)
++++|+ ||++|||+.+||++||+++|++.+|||||+++|||||+...+|+++||||++.|+|+|+.++++|.||.||+
T Consensus 148 ~~~~~q--rk~~G~Ls~~sL~~IV~~eDvv~gse~Lt~v~vaVpk~l~~~F~~syeTls~~V~p~sa~kv~~D~EyvLf~ 225 (383)
T COG5127 148 ECEKLQ--RKTRGSLSDISLGIIVEREDVVEGSEFLTVVYVAVPKALVPEFNRSYETLSPHVSPDSAEKVNSDEEYVLFK 225 (383)
T ss_pred HHHHHH--hhccCChhhhhHhhhcCchhhccchhhheeeEEEehhhhhHHHHhhhhhcCcccChhHHhhhcCccceEEEE
Confidence 456677 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeechHHHHHHHHHhcCCeeEEEeechhhhhhhHHHHHHhhhhhcCc
Q psy6087 82 VTLFKKVQDEFRHHAREKKFIVREFVYNEEELRNQVTEWVQNYEKLTAM 130 (168)
Q Consensus 82 V~lFkk~v~~F~~~~re~kf~vRdF~y~ee~~~sskKEw~~~Ye~l~~~ 130 (168)
|.+|||-+++|.++|||+||+||||.|+++..+.++.|+-..-+..+.|
T Consensus 226 V~vfkk~~~~f~t~are~kf~vref~~~~~l~e~~~~e~d~Aa~ke~~m 274 (383)
T COG5127 226 VYVFKKGEEDFRTMAREEKFMVREFDKNMVLSEEMIAERDRAAEKESAM 274 (383)
T ss_pred EEEEecChHHHHHHHHhcCcchhhcchhhhhHHHHHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999998877776665
No 4
>PF03223 V-ATPase_C: V-ATPase subunit C; InterPro: IPR004907 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C subunit that is part of the V1 complex, and is localised to the interface between the V1 and V0 complexes []. This subunit does not show any homology with F-ATPase subunits. The C subunit plays an essential role in controlling the assembly of V-ATPase, acting as a flexible stator that holds together the catalytic (V1) and membrane (V0) sectors of the enzyme []. The release of subunit C from the ATPase complex results in the dissociation of the V1 and V0 subcomplexes, which is an important mechanism in controlling V-ATPase activity in cells. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033180 proton-transporting V-type ATPase, V1 domain; PDB: 1U7L_A.
Probab=99.79 E-value=7.6e-20 Score=163.23 Aligned_cols=55 Identities=53% Similarity=0.992 Sum_probs=49.7
Q ss_pred hhhHHHHHHhhhhhcCceecCCcccccccCCeeEEEEEEeeecHHHHHHHHhhcC
Q psy6087 114 RNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKN 168 (168)
Q Consensus 114 ~sskKEw~~~Ye~l~~~VVPrSs~~i~~d~e~~L~~V~lFkk~~~~F~~~~re~~ 168 (168)
++..+||+++||+|++|||||||++|++|+||+||+||||||++++|+++|||+|
T Consensus 189 k~~~~ewl~~YEtL~~~VVPrSs~~i~eD~ey~L~~VtlFkk~~~eF~~~~re~k 243 (371)
T PF03223_consen 189 KNSVKEWLKSYETLTDMVVPRSSKKIAEDSEYVLFSVTLFKKVVDEFKNKCREKK 243 (371)
T ss_dssp GGGHHHHHHHGGGSSTTB-TT--EEEEE-SSEEEEEEEEEGGGHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHhccCCccCCChHHhhhcCCCeEEEEEEEEeccHHHHHHHHHHcC
Confidence 5889999999999999999999999999999999999999999999999999986
No 5
>KOG2909|consensus
Probab=99.71 E-value=4.8e-18 Score=150.35 Aligned_cols=64 Identities=47% Similarity=0.870 Sum_probs=58.8
Q ss_pred EEeechhhh--------hhhHHHHHHhhhhhcCceecCCcccccccCCeeEEEEEEeeecHHHHHHHHhhcC
Q psy6087 105 EFVYNEEEL--------RNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKN 168 (168)
Q Consensus 105 dF~y~ee~~--------~sskKEw~~~Ye~l~~~VVPrSs~~i~~d~e~~L~~V~lFkk~~~~F~~~~re~~ 168 (168)
||..+.|.+ +...+||+++||||++|||||||++|++|.||.||+||||||.+|+|+++|||+|
T Consensus 175 dfvl~SEyL~tllVvVPK~~~~df~~~YEtlsd~VvPrSskki~eD~Ey~Lf~V~lFkk~~edFr~~ArE~k 246 (381)
T KOG2909|consen 175 DFVLDSEYLTTLLVVVPKALVKDFLKSYETLSDMVVPRSSKKINEDAEYVLFTVTLFKKVAEDFRTKAREKK 246 (381)
T ss_pred hhccchhhheeEEEEeeccchHHHHHHHHhhccccchhhhhhcccccceEEEEEEEeehhHHHHHHHHHHcC
Confidence 666665544 5889999999999999999999999999999999999999999999999999987
No 6
>COG5127 Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion]
Probab=99.29 E-value=2.2e-12 Score=113.68 Aligned_cols=55 Identities=35% Similarity=0.675 Sum_probs=53.3
Q ss_pred hhhHHHHHHhhhhhcCceecCCcccccccCCeeEEEEEEeeecHHHHHHHHhhcC
Q psy6087 114 RNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKN 168 (168)
Q Consensus 114 ~sskKEw~~~Ye~l~~~VVPrSs~~i~~d~e~~L~~V~lFkk~~~~F~~~~re~~ 168 (168)
.+...||+++||||++.|+|+|+++|++|.||.||+|.+|||-.++|+++|||.|
T Consensus 190 k~l~~~F~~syeTls~~V~p~sa~kv~~D~EyvLf~V~vfkk~~~~f~t~are~k 244 (383)
T COG5127 190 KALVPEFNRSYETLSPHVSPDSAEKVNSDEEYVLFKVYVFKKGEEDFRTMAREEK 244 (383)
T ss_pred hhhhHHHHhhhhhcCcccChhHHhhhcCccceEEEEEEEEecChHHHHHHHHhcC
Confidence 5889999999999999999999999999999999999999999999999999976
No 7
>PF04913 Baculo_Y142: Baculovirus Y142 protein; InterPro: IPR006997 This is a family of Baculovirus proteins of unknown function.
Probab=40.72 E-value=9.5 Score=35.88 Aligned_cols=44 Identities=23% Similarity=0.551 Sum_probs=35.3
Q ss_pred eechHHHHHHHHHhcCCeeEEEeechhhhhhhHHHHHHhhhhhcC
Q psy6087 85 FKKVQDEFRHHAREKKFIVREFVYNEEELRNQVTEWVQNYEKLTA 129 (168)
Q Consensus 85 Fkk~v~~F~~~~re~kf~vRdF~y~ee~~~sskKEw~~~Ye~l~~ 129 (168)
|-.+-.||.+....-+|+=|||.||. ..-...-|.++.|.|-|.
T Consensus 238 Fd~i~~El~~~~~~IkfIQRDYIyDA-~FP~dLLe~L~~Y~s~TS 281 (453)
T PF04913_consen 238 FDEIEKELNSNSSYIKFIQRDYIYDA-NFPDDLLELLNEYMSDTS 281 (453)
T ss_pred HHHHHHHHhcCCceEEEEeeceEecC-CCCHHHHHHHHHhccCCc
Confidence 44557788888888899999999999 666666666699988776
No 8
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=34.88 E-value=3.1e+02 Score=25.68 Aligned_cols=118 Identities=20% Similarity=0.324 Sum_probs=61.2
Q ss_pred cccccccc--cCCCCccccCcceeEEEEEecCCCH-----HHHHHhhhhhcCccccCCccceeecCCeeeEEEEEeechH
Q psy6087 17 LTRNLADL--VKKEHFILDSEYLTTLLVVVPRNQV-----TEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQ 89 (168)
Q Consensus 17 ~~r~L~dv--V~~e~~v~dsEyLtTl~V~VPk~~~-----~~w~~~YE~l~~~VVPrSs~~i~eD~e~~L~~V~lFkk~v 89 (168)
+.|+++.+ + |...+ ++- +++-+|||-... ..|++.||.++ +..| +...-.|++|-.-.
T Consensus 228 l~rp~~~~~~~-~~~~~--~~~-~~V~iIvPl~~r~~~~~~~Fl~~~~~~~----------l~~~-~~~~L~vV~~~~~~ 292 (499)
T PF05679_consen 228 LQRPFGPLEIV-PMPYV--TES-TRVHIIVPLSGREADWFRRFLENFEKVC----------LETD-DNVFLTVVLFYDPS 292 (499)
T ss_pred EEcccCceeEe-ccccc--cCC-CEEEEEEEecCccHHHHHHHHHHHHHHh----------cccC-CceEEEEEEecCcc
Confidence 34555543 3 55554 333 889999998777 55677888753 1123 44555666665422
Q ss_pred HHHHHHHHhcCCeeEEEeechhhhhhhHHHHHHhhhhhcCceecCC-------------cccccccCCeeEEEEEEeeec
Q psy6087 90 DEFRHHAREKKFIVREFVYNEEELRNQVTEWVQNYEKLTAMIVPRS-------------SQLVSQDQDFALYTVTLFKKV 156 (168)
Q Consensus 90 ~~F~~~~re~kf~vRdF~y~ee~~~sskKEw~~~Ye~l~~~VVPrS-------------s~~i~~d~e~~L~~V~lFkk~ 156 (168)
+.= +...+++...+..+.|-.-.=-++|.+ ++++.. +--||-..+-=-+
T Consensus 293 ~~~----------------~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~~--d~L~f~~Dvd~~f 354 (499)
T PF05679_consen 293 DSD----------------SISQIKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFPP--DSLLFFCDVDMVF 354 (499)
T ss_pred cch----------------hHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCCC--CcEEEEEeCCccc
Confidence 100 000134445555555522222344444 122222 3344444454566
Q ss_pred HHHHHHHHhhc
Q psy6087 157 QDEFRHHAREK 167 (168)
Q Consensus 157 ~~~F~~~~re~ 167 (168)
-.+|.++||.|
T Consensus 355 ~~~fL~rcR~n 365 (499)
T PF05679_consen 355 TSDFLNRCRMN 365 (499)
T ss_pred CHHHHHHHHHh
Confidence 78999999975
No 9
>KOG1016|consensus
Probab=34.68 E-value=69 Score=33.14 Aligned_cols=42 Identities=29% Similarity=0.653 Sum_probs=28.5
Q ss_pred CccccccccccCCCCccccCcceeEEEEEecCCCHHHHHHhhhhhcCccccC
Q psy6087 15 SLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPR 66 (168)
Q Consensus 15 nL~~r~L~dvV~~e~~v~dsEyLtTl~V~VPk~~~~~w~~~YE~l~~~VVPr 66 (168)
+|.+-+..||. +------|+|++||-+-...|++.|- |-.|+
T Consensus 296 TlQVisF~dif------lRhT~AKtVL~ivPiNTlQNWlsEfn----mWiP~ 337 (1387)
T KOG1016|consen 296 TLQVISFSDIF------LRHTKAKTVLVIVPINTLQNWLSEFN----MWIPK 337 (1387)
T ss_pred eeEEeehhHHH------hhcCccceEEEEEehHHHHHHHHHhh----hhcCC
Confidence 45555555553 22223468999999999999999885 44554
No 10
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=23.77 E-value=42 Score=23.16 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCCeeEE
Q psy6087 90 DEFRHHAREKKFIVRE 105 (168)
Q Consensus 90 ~~F~~~~re~kf~vRd 105 (168)
++...-|+++||++.+
T Consensus 30 ~eV~~YC~~~GWIip~ 45 (57)
T PF08727_consen 30 PEVREYCEEQGWIIPA 45 (57)
T ss_dssp HHHHHHHHHHT--TT-
T ss_pred HHHHHHHHHCCccccC
Confidence 5788999999999876
No 11
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=22.11 E-value=1.2e+02 Score=24.48 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=19.2
Q ss_pred EEEEEecCCCHHHHHHhhhhhcC
Q psy6087 39 TLLVVVPRNQVTEWVQNYEKLTA 61 (168)
Q Consensus 39 Tl~V~VPk~~~~~w~~~YE~l~~ 61 (168)
..+|++|++....|....+..++
T Consensus 60 ~~LIv~P~~l~~~W~~E~~~~~~ 82 (299)
T PF00176_consen 60 KTLIVVPSSLLSQWKEEIEKWFD 82 (299)
T ss_dssp -EEEEE-TTTHHHHHHHHHHHSG
T ss_pred ceeEeeccchhhhhhhhhccccc
Confidence 38999999999999999999883
Done!