Query psy6087
Match_columns 168
No_of_seqs 177 out of 332
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 17:17:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u7l_A Vacuolar ATP synthase s 100.0 1.1E-47 3.7E-52 342.1 10.8 117 2-120 158-274 (392)
2 1u7l_A Vacuolar ATP synthase s 99.8 2.8E-20 9.7E-25 165.7 6.5 55 114-168 200-254 (392)
3 1ng7_A Poliovirus 3A-N, genome 28.5 22 0.00076 23.7 1.3 15 90-104 32-46 (60)
4 4g0o_A Protein argonaute 5; MI 21.3 2.3E+02 0.008 20.4 6.0 79 77-155 11-111 (139)
5 2lci_A Protein OR36; structura 20.8 1.3E+02 0.0045 22.1 4.4 72 41-127 56-127 (134)
6 2vdw_A Vaccinia virus capping 20.2 48 0.0016 27.0 2.1 21 90-110 227-247 (302)
7 2l69_A Rossmann 2X3 fold prote 17.9 1.2E+02 0.004 22.4 3.5 37 89-126 15-51 (134)
8 1z63_A Helicase of the SNF2/RA 14.7 1.1E+02 0.0037 25.8 3.1 24 38-61 87-110 (500)
9 1v74_B Colicin D immunity prot 10.8 76 0.0026 22.5 0.7 22 104-125 65-86 (87)
10 3ujc_A Phosphoethanolamine N-m 10.7 3.9E+02 0.013 19.7 4.9 68 88-155 185-265 (266)
No 1
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1
Probab=100.00 E-value=1.1e-47 Score=342.06 Aligned_cols=117 Identities=42% Similarity=0.688 Sum_probs=111.5
Q ss_pred cccccccccCCCCCccccccccccCCCCccccCcceeEEEEEecCCCHHHHHHhhhhhcCccccCCccceeecCCeeeEE
Q psy6087 2 NFNTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYT 81 (168)
Q Consensus 2 ~~~~~~~~Rk~~GnL~~r~L~dvV~~e~~v~dsEyLtTl~V~VPk~~~~~w~~~YE~l~~~VVPrSs~~i~eD~e~~L~~ 81 (168)
|++++. ||++|||++|||++||+|||||+|||||||++|||||++++||+++||+|++|||||||++|++|+||+||+
T Consensus 158 ~l~~~~--RK~~GnL~~rsL~~iV~~edfv~dSEyL~TllVvVPk~~~~dwl~~YEtL~~~VVPrSs~~i~~D~ey~L~~ 235 (392)
T 1u7l_A 158 NLAAAE--RKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFN 235 (392)
T ss_dssp HHHHHH--HHTCSCTTTSCCTTTCCGGGSCCSCSSEEEEEEEEEGGGHHHHHHHGGGSSTTBCTTCCEEEEECSSEEEEE
T ss_pred HHHHHh--cccCCceeeeeHHHhcCHHHccCccccceEEEEEEeCccHHHHHHHHhhcCCCccCChhhhhhcCCCceEEE
Confidence 456666 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeechHHHHHHHHHhcCCeeEEEeechhhhhhhHHHH
Q psy6087 82 VTLFKKVQDEFRHHAREKKFIVREFVYNEEELRNQVTEW 120 (168)
Q Consensus 82 V~lFkk~v~~F~~~~re~kf~vRdF~y~ee~~~sskKEw 120 (168)
||||||++++|+++|||+||+||||+|+|+++++.++|.
T Consensus 236 VtlFkk~~~eF~~~~Re~kf~vRdF~y~ee~~~~~~~e~ 274 (392)
T 1u7l_A 236 VHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKEH 274 (392)
T ss_dssp EEEEGGGHHHHHHHHHHTTCEEECCCCCHHHHHHHHHHH
T ss_pred EEEEhhhHHHHHHHHHHcCCccccCcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999987666554
No 2
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1
Probab=99.80 E-value=2.8e-20 Score=165.75 Aligned_cols=55 Identities=35% Similarity=0.675 Sum_probs=53.8
Q ss_pred hhhHHHHHHhhhhhcCceecCCcccccccCCeeEEEEEEeeecHHHHHHHHhhcC
Q psy6087 114 RNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKN 168 (168)
Q Consensus 114 ~sskKEw~~~Ye~l~~~VVPrSs~~i~~d~e~~L~~V~lFkk~~~~F~~~~re~~ 168 (168)
++..+||+++||||++|||||||++|++|+||+||+||||||++++|+++|||+|
T Consensus 200 k~~~~dwl~~YEtL~~~VVPrSs~~i~~D~ey~L~~VtlFkk~~~eF~~~~Re~k 254 (392)
T 1u7l_A 200 KSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFKKNVQEFTTAAREKK 254 (392)
T ss_dssp GGGHHHHHHHGGGSSTTBCTTCCEEEEECSSEEEEEEEEEGGGHHHHHHHHHHTT
T ss_pred CccHHHHHHHHhhcCCCccCChhhhhhcCCCceEEEEEEEhhhHHHHHHHHHHcC
Confidence 6889999999999999999999999999999999999999999999999999986
No 3
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=28.45 E-value=22 Score=23.74 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCeeE
Q psy6087 90 DEFRHHAREKKFIVR 104 (168)
Q Consensus 90 ~~F~~~~re~kf~vR 104 (168)
++.++.|+++||++-
T Consensus 32 ~eV~~YC~~kGwIiP 46 (60)
T 1ng7_A 32 QEVRDYCEKKGWIVN 46 (60)
T ss_dssp HHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHCCceec
Confidence 688999999999985
No 4
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=21.32 E-value=2.3e+02 Score=20.42 Aligned_cols=79 Identities=9% Similarity=0.130 Sum_probs=46.6
Q ss_pred eeeEEEEEe---------echHHHHHHHHHhcCCeeEE---E---eechhhhhhhHHHHHHhh--hhhcCceecCCccc-
Q psy6087 77 FALYTVTLF---------KKVQDEFRHHAREKKFIVRE---F---VYNEEELRNQVTEWVQNY--EKLTAMIVPRSSQL- 138 (168)
Q Consensus 77 ~~L~~V~lF---------kk~v~~F~~~~re~kf~vRd---F---~y~ee~~~sskKEw~~~Y--e~l~~~VVPrSs~~- 138 (168)
-.-|.|+.| +.+++.|...|+..|+.+.+ + .-+++..+...++..+.+ -.|-=.|+|.....
T Consensus 11 l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~~~~~~~e~~l~~~~~~~~~~qlv~~ilp~~~~~Y 90 (139)
T 4g0o_A 11 VTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEHIEEALLDIHKRAPGLQLLIVILPDVTGSY 90 (139)
T ss_dssp ECSEEEEECCSSSCTTHHHHHHHHHHHHHHHHTCEECSSCSSCCEECCGGGHHHHHHHHHHHCTTCSEEEEECCSSSSCH
T ss_pred cCeEEEEEccCCCCHHHHHHHHHHHHHHHHHcCCccCCCCEEeeecCCchhHHHHHHHHHHhcCCCcEEEEEECCCCCcH
Confidence 445777777 35788999999999999873 1 123445555555555433 11222567775432
Q ss_pred ----ccccCCeeEEEEEEeee
Q psy6087 139 ----VSQDQDFALYTVTLFKK 155 (168)
Q Consensus 139 ----i~~d~e~~L~~V~lFkk 155 (168)
-..|-++++=|..+--+
T Consensus 91 ~~iK~~~~~~~gi~tQcv~~~ 111 (139)
T 4g0o_A 91 GKIKRICETELGIVSQCCQPR 111 (139)
T ss_dssp HHHHCCCCCCCCCCEEEECHH
T ss_pred HHHHHHHhccCCcceEEechh
Confidence 11455677777666443
No 5
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=20.76 E-value=1.3e+02 Score=22.14 Aligned_cols=72 Identities=26% Similarity=0.410 Sum_probs=46.9
Q ss_pred EEEecCCCHHHHHHhhhhhcCccccCCccceeecCCeeeEEEEEeechHHHHHHHHHhcCCeeEEEeechhhhhhhHHHH
Q psy6087 41 LVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELRNQVTEW 120 (168)
Q Consensus 41 ~V~VPk~~~~~w~~~YE~l~~~VVPrSs~~i~eD~e~~L~~V~lFkk~v~~F~~~~re~kf~vRdF~y~ee~~~sskKEw 120 (168)
++--.|+..++-+.---.|+--|. .+.+|.+ -.-.++|+.+....||-||.-.-|+++++ -..||
T Consensus 56 iisndkqllkemlelisklgykvf-----lllqdqd---------eneleefkrkiesqgyevrkvtddeealk-ivref 120 (134)
T 2lci_A 56 IISNDKQLLKEMLELISKLGYKVF-----LLLQDQD---------ENELEEFKRKIESQGYEVRKVTDDEEALK-IVREF 120 (134)
T ss_dssp EEESCHHHHHHHHHHHHHHTCCEE-----EEEECSC---------HHHHHHHHHHHHTTTCEEEEECCHHHHHH-HHHHH
T ss_pred EEcCcHHHHHHHHHHHHHhCceeE-----EEeecCc---------hhHHHHHHHHHHhCCeeeeecCChHHHHH-HHHHH
Confidence 333445555666655555543332 3345544 24579999999999999999988887764 46777
Q ss_pred HHhhhhh
Q psy6087 121 VQNYEKL 127 (168)
Q Consensus 121 ~~~Ye~l 127 (168)
.++--+|
T Consensus 121 mqkagsl 127 (134)
T 2lci_A 121 MQKAGSL 127 (134)
T ss_dssp HHHHHHH
T ss_pred HHhcccc
Confidence 7765444
No 6
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=20.17 E-value=48 Score=27.04 Aligned_cols=21 Identities=14% Similarity=0.128 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCeeEEEeech
Q psy6087 90 DEFRHHAREKKFIVREFVYNE 110 (168)
Q Consensus 90 ~~F~~~~re~kf~vRdF~y~e 110 (168)
+++...|++.||.+.+-.--.
T Consensus 227 ~el~~l~~~~Gl~lv~~~~f~ 247 (302)
T 2vdw_A 227 NDIVRVFNEYGFVLVDNVDFA 247 (302)
T ss_dssp HHHHHHHHHTTEEEEEEEEHH
T ss_pred HHHHHHHHHCCCEEEEecChH
Confidence 789999999999998764333
No 7
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=17.85 E-value=1.2e+02 Score=22.44 Aligned_cols=37 Identities=24% Similarity=0.504 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCeeEEEeechhhhhhhHHHHHHhhhh
Q psy6087 89 QDEFRHHAREKKFIVREFVYNEEELRNQVTEWVQNYEK 126 (168)
Q Consensus 89 v~~F~~~~re~kf~vRdF~y~ee~~~sskKEw~~~Ye~ 126 (168)
...|+.-.+.+||.||.- -+|.+++.+..|..++|..
T Consensus 15 lrkfkdiikkngfkvrtv-rspqelkdsieelvkkyna 51 (134)
T 2l69_A 15 LRKFKDIIKKNGFKVRTV-RSPQELKDSIEELVKKYNA 51 (134)
T ss_dssp HHHHHHHHHHTTCEEEEE-CSHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhcCceEEEe-cCHHHHHHHHHHHHHHhCC
Confidence 567999999999999975 5788888888888888854
No 8
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=14.72 E-value=1.1e+02 Score=25.84 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=21.0
Q ss_pred eEEEEEecCCCHHHHHHhhhhhcC
Q psy6087 38 TTLLVVVPRNQVTEWVQNYEKLTA 61 (168)
Q Consensus 38 tTl~V~VPk~~~~~w~~~YE~l~~ 61 (168)
..++|++|.+...+|.+..+..++
T Consensus 87 ~~~LIv~P~~l~~qw~~e~~~~~~ 110 (500)
T 1z63_A 87 TPSLVICPLSVLKNWEEELSKFAP 110 (500)
T ss_dssp SSEEEEECSTTHHHHHHHHHHHCT
T ss_pred CCEEEEccHHHHHHHHHHHHHHCC
Confidence 468899999999999999998864
No 9
>1v74_B Colicin D immunity protein; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: a.24.20.1 PDB: 1tfk_B* 1tfo_B
Probab=10.77 E-value=76 Score=22.47 Aligned_cols=22 Identities=9% Similarity=0.398 Sum_probs=19.4
Q ss_pred EEEeechhhhhhhHHHHHHhhh
Q psy6087 104 REFVYNEEELRNQVTEWVQNYE 125 (168)
Q Consensus 104 RdF~y~ee~~~sskKEw~~~Ye 125 (168)
++|.+|+++++...++.+++|.
T Consensus 65 ~~yElde~~Lr~ev~~~L~k~~ 86 (87)
T 1v74_B 65 ANYEIDDNGLKVEVRSILEKFK 86 (87)
T ss_dssp CTTCBCHHHHHHHHHHHHHHTT
T ss_pred cccccChHHHHHHHHHHHHHhc
Confidence 3789999999999999999886
No 10
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=10.73 E-value=3.9e+02 Score=19.74 Aligned_cols=68 Identities=6% Similarity=-0.071 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhcCCeeEEEeechhhhhhhHHHHHHhhhhhcCceecCCcc------------cc-cccCCeeEEEEEEee
Q psy6087 88 VQDEFRHHAREKKFIVREFVYNEEELRNQVTEWVQNYEKLTAMIVPRSSQ------------LV-SQDQDFALYTVTLFK 154 (168)
Q Consensus 88 ~v~~F~~~~re~kf~vRdF~y~ee~~~sskKEw~~~Ye~l~~~VVPrSs~------------~i-~~d~e~~L~~V~lFk 154 (168)
..+++...+++.||.+-+...-...+......|....+...+-+++.-+. .+ ....++.-|.+.+++
T Consensus 185 ~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~ 264 (266)
T 3ujc_A 185 TVEEYADILTACNFKNVVSKDLSDYWNQLLEVEHKYLHENKEEFLKLFSEKKFISLDDGWSRKIKDSKRKMQRWGYFKAT 264 (266)
T ss_dssp CHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHHHhCHHHHHHhcCHHHHHHHHHHHHHHHHHHHcCcccceEEEEe
Confidence 36789999999999988877777666666667766655443322221111 11 123456668888877
Q ss_pred e
Q psy6087 155 K 155 (168)
Q Consensus 155 k 155 (168)
|
T Consensus 265 K 265 (266)
T 3ujc_A 265 K 265 (266)
T ss_dssp C
T ss_pred C
Confidence 6
Done!