RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6087
(168 letters)
>gnl|CDD|217433 pfam03223, V-ATPase_C, V-ATPase subunit C.
Length = 371
Score = 172 bits (439), Expect = 2e-53
Identities = 57/107 (53%), Positives = 85/107 (79%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
+G+L R+LAD+VK E F+LDSEYLTT+LV VP+N V +++ +YE L+ M+VPRS+++++
Sbjct: 158 TGNLSVRSLADIVKPEDFVLDSEYLTTVLVAVPKNSVKDFLASYETLSDMVVPRSAKVIA 217
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELRNQVTE 119
+D ++AL+TVTLFKKV ++F+ REKKFIVR+F Y+EE + E
Sbjct: 218 EDDEYALFTVTLFKKVVEDFKTKCREKKFIVRDFKYSEELSEEEKRE 264
Score = 86.9 bits (216), Expect = 9e-21
Identities = 31/77 (40%), Positives = 51/77 (66%), Gaps = 10/77 (12%)
Query: 102 IVRE--FVYNEEELR--------NQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVT 151
IV+ FV + E L N V +++ +YE L+ M+VPRS++++++D ++AL+TVT
Sbjct: 169 IVKPEDFVLDSEYLTTVLVAVPKNSVKDFLASYETLSDMVVPRSAKVIAEDDEYALFTVT 228
Query: 152 LFKKVQDEFRHHAREKN 168
LFKKV ++F+ REK
Sbjct: 229 LFKKVVEDFKTKCREKK 245
>gnl|CDD|227456 COG5127, COG5127, Vacuolar H+-ATPase V1 sector, subunit C [Energy
production and conversion].
Length = 383
Score = 105 bits (263), Expect = 2e-27
Identities = 44/120 (36%), Positives = 73/120 (60%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
GSL +L +V++E + SE+LT + V VP+ V E+ ++YE L+ + P S++ V+
Sbjct: 157 RGSLSDISLGIIVEREDVVEGSEFLTVVYVAVPKALVPEFNRSYETLSPHVSPDSAEKVN 216
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELRNQVTEWVQNYEKLTAMIV 132
D+++ L+ V +FKK +++FR ARE+KF+VREF N + E + EK +AM
Sbjct: 217 SDEEYVLFKVYVFKKGEEDFRTMAREEKFMVREFDKNMVLSEEMIAERDRAAEKESAMEK 276
Score = 50.7 bits (121), Expect = 5e-08
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 105 EFVYNEEELR--------NQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKV 156
+ V E L V E+ ++YE L+ + P S++ V+ D+++ L+ V +FKK
Sbjct: 173 DVVEGSEFLTVVYVAVPKALVPEFNRSYETLSPHVSPDSAEKVNSDEEYVLFKVYVFKKG 232
Query: 157 QDEFRHHAREK 167
+++FR ARE+
Sbjct: 233 EEDFRTMAREE 243
>gnl|CDD|214481 smart00036, CNH, Domain found in NIK1-like kinases, mouse citron
and yeast ROM1, ROM2.
Length = 302
Score = 28.5 bits (64), Expect = 1.9
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 30 FILD-SEYLTTLLVVVPRNQVTE-WVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKK 87
++L+ S+ TL ++ R VT+ WV + MI + QL ++ L +K
Sbjct: 25 YVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQL------YSHPLSALVEK 78
Query: 88 VQDEFRHHAREKKFIVREF 106
+ +K ++ +
Sbjct: 79 KEALGSARLVIRKNVLTKI 97
>gnl|CDD|218325 pfam04913, Baculo_Y142, Baculovirus Y142 protein.
Length = 454
Score = 28.0 bits (63), Expect = 2.8
Identities = 15/80 (18%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 84 LFKKVQDEFRHHAREKKFIVREFVYN---EEELRNQVTEWVQN---YEKLTAMIVPRSSQ 137
+F ++++E ++ KFI R+++Y+ ++L + E++ Y+ +T S
Sbjct: 237 VFDEIRNELNTNSNYVKFIQRDYIYDANFPDDLLELLNEYMTKTSVYKFITKFAEEESLG 296
Query: 138 LVSQDQDFALYTVTLFKKVQ 157
+ Y V ++K+
Sbjct: 297 NSYSEIVIDRYAVDKYRKLL 316
>gnl|CDD|215467 PLN02866, PLN02866, phospholipase D.
Length = 1068
Score = 27.4 bits (61), Expect = 4.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 83 TLFKKVQDEFRHHAREKKFIVREFVYNEEELRNQVTEWVQN 123
TL+KK H KK R F+ E + QV EW+QN
Sbjct: 47 TLYKKASQVLYLHFALKK---RAFIEELHEKQEQVKEWLQN 84
>gnl|CDD|233736 TIGR02122, TRAP_TAXI, TRAP transporter solute receptor, TAXI
family. This family is one of at least three major
families of extracytoplasmic solute receptor (ESR) for
TRAP (Tripartite ATP-independent Periplasmic
Transporter) transporters. The others are the DctP
(TIGR00787) and SmoM (pfam03480) families. These
transporters are secondary (driven by an ion gradient)
but composed of three polypeptides, although in some
species the 4-TM and 12-TM integral membrane proteins
are fused. Substrates for this transporter family are
not fully characterized but, besides C4 dicarboxylates,
may include mannitol and other compounds [Transport and
binding proteins, Unknown substrate].
Length = 320
Score = 27.3 bits (61), Expect = 4.5
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 41 LVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLF 85
+V + +V + + Y ++P + QD+D V
Sbjct: 216 IVPISGEKVEKLREKYPFYRKGVIPAGTYP-GQDEDVPTLAVPAA 259
>gnl|CDD|224834 COG1923, Hfq, Uncharacterized host factor I protein [General
function prediction only].
Length = 77
Score = 25.4 bits (56), Expect = 5.4
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 86 KKVQDEFRHHAREKKFIVREFVYNEEELRNQVTEWVQNYEKL 127
+ +QD F + R++K V F+ N +L+ QV E N+ L
Sbjct: 5 QNLQDPFLNALRKEKIPVTIFLVNGFKLQGQV-ESFDNFVVL 45
>gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional.
Length = 387
Score = 26.6 bits (59), Expect = 7.3
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 10 SNPSGSLLTRN----LADLVKKE--HFILDSEY 36
+NP+G+LL+R+ L+ ++ H ++D Y
Sbjct: 175 ANPTGTLLSRDELAALSQALRARGGHLVVDEIY 207
>gnl|CDD|119142 pfam10622, Ehbp, Energy-converting hydrogenase B subunit P
(EhbP). Ehb (energy-converting hydrogenase B) is an
methanogenic archaeal enzyme that functions in one of
the metabolic pathways involved in methanol reduction
to methane. This family contains subunit P of Ehb.
Length = 78
Score = 25.1 bits (55), Expect = 7.6
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 9/41 (21%)
Query: 51 EWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDE 91
EW++ + +L ++VP V+ D DF + ++K V+++
Sbjct: 43 EWIEEHRELGLIVVP-----VNDDDDF----LGMWKMVKEK 74
Score = 25.1 bits (55), Expect = 7.6
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 9/41 (21%)
Query: 119 EWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDE 159
EW++ + +L ++VP V+ D DF + ++K V+++
Sbjct: 43 EWIEEHRELGLIVVP-----VNDDDDF----LGMWKMVKEK 74
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.131 0.375
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,439,008
Number of extensions: 745194
Number of successful extensions: 667
Number of sequences better than 10.0: 1
Number of HSP's gapped: 666
Number of HSP's successfully gapped: 20
Length of query: 168
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 78
Effective length of database: 6,945,742
Effective search space: 541767876
Effective search space used: 541767876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)