RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6087
(168 letters)
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein;
HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP:
e.57.1.1
Length = 392
Score = 148 bits (374), Expect = 7e-44
Identities = 48/107 (44%), Positives = 74/107 (69%)
Query: 13 SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
+G L R+L D+VK E F+L+SE+LTT+LV VP++ +++ ++YE L+ +VP S+ +++
Sbjct: 167 TGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIA 226
Query: 73 QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELRNQVTE 119
+D ++ L+ V LFKK EF AREKKFI REF Y+EE + E
Sbjct: 227 EDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKE 273
Score = 78.5 bits (193), Expect = 6e-18
Identities = 19/55 (34%), Positives = 36/55 (65%)
Query: 114 RNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKN 168
++ +++ ++YE L+ +VP S+ ++++D ++ L+ V LFKK EF AREK
Sbjct: 200 KSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFKKNVQEFTTAAREKK 254
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.004
Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 21/162 (12%)
Query: 12 PSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWV-----QNYEKLTAMIVPR 66
P L + ++ + + + L L+ V ++V NY+ L + I
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 67 SSQLVSQDQDFALYTVTLFKKVQDEFRHH-AREKKFI-VREFVYNEEELRNQVTEWVQNY 124
Q + + L+ Q +++ +R + ++ +R+ + ELR + V
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL---ELRPA--KNVLID 156
Query: 125 -----EK--LTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDE 159
K + + S V DF ++ + L E
Sbjct: 157 GVLGSGKTWVALDVC--LSYKVQCKMDFKIFWLNLKNCNSPE 196
Score = 28.7 bits (63), Expect = 1.2
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 4 NTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMI 63
+ W+ L T L L + +I D++ LV N + +++ E +I
Sbjct: 509 HDSTAWNASGSILNT--LQQLKFYKPYICDNDPKYERLV----NAILDFLPKIE--ENLI 560
Query: 64 VPRSSQLVS---QDQDFALYTVTLFKKVQ 89
+ + L+ +D A++ K+VQ
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEA-HKQVQ 588
Score = 27.1 bits (59), Expect = 3.5
Identities = 29/216 (13%), Positives = 61/216 (28%), Gaps = 76/216 (35%)
Query: 2 NFNTIVQWSNPSGSLLTRNLADLVKKEHFILDSEYLTTL---LVVVPRN-----QVTE-- 51
T W + + LT + + L+ + L V P + +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNV----LEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 52 WVQNYEKLTAMIVP--RSSQLVSQDQDFALYTV-----TLFKKVQDEFRHHAR--EKKFI 102
W + ++V LV + + ++ L K+++E+ H + I
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 103 VREF-------------VYN----------------------------EEELRNQVTEW- 120
+ F Y+ E+++R+ T W
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 121 -----------VQNYEKLTAMIVPRSSQLVSQDQDF 145
++ Y+ P+ +LV+ DF
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase,
kynurenine aminotransferase, MJ0684, cytoplasm; HET:
LLP; 2.20A {Methanococcus jannaschii}
Length = 370
Score = 30.9 bits (71), Expect = 0.16
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 10 SNPSGSLLTRNLADLVKKEHFILDS 34
SNP G ++ R + + + + S
Sbjct: 164 SNPLGEVIDREIYEFAYENIPYIIS 188
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.29
Identities = 36/217 (16%), Positives = 68/217 (31%), Gaps = 76/217 (35%)
Query: 6 IVQW-SNPSGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQ---------- 54
I++W NPS + D +YL ++ + P V +
Sbjct: 215 ILEWLENPSNTP----------------DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 55 NYEKLTAMIVPRSSQLVSQD-------------QDF---ALYTVT-LFK---KVQDEFRH 94
+L + + + + SQ + F +T LF + + + +
Sbjct: 259 TPGELRSYL--KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 95 HAREKKFIVREFVYNEEE-------LRNQVTEWVQNYEKLTAMIVPRSSQ----LVSQDQ 143
+ I+ + + N E + N E VQ+Y T +P Q LV+ +
Sbjct: 317 TSLPPS-ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 144 DF-------ALYTVTL-FKKV-------QDEFRHHAR 165
+ +LY + L +K Q R
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum}
SCOP: c.67.1.1
Length = 388
Score = 26.7 bits (60), Expect = 3.6
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 15/52 (28%)
Query: 10 SNPSGSLLTRN----LADLVKK-----------EHFILDSEYLTTLLVVVPR 46
SNP+G + T + +A + + E + D ++ P
Sbjct: 173 SNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPE 224
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature
dependence O substrate recognition; HET: PLP; 1.80A
{Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A*
1dju_A*
Length = 389
Score = 26.7 bits (60), Expect = 4.6
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Query: 10 SNPSGSLLTRN----LADLVKKEHFILDS----EYLT 38
NP+G++LT+ +AD V + I+ S E+
Sbjct: 170 CNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFI 206
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PLP; 2.10A
{Eubacterium rectale}
Length = 398
Score = 26.4 bits (59), Expect = 4.6
Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 8/38 (21%)
Query: 10 SNPSGSLLTR----NLADLVKKEHFILDSEYLTTLLVV 43
+NPSG++ + L+DL++K+ E + ++
Sbjct: 182 NNPSGTVYSEETIKKLSDLLEKK----SKEIGRPIFII 215
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP;
1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A*
1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Length = 385
Score = 25.6 bits (57), Expect = 9.2
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 16/51 (31%)
Query: 10 SNPSGSLLTRN----LADLVKK-----------EHFILDSEYLTTLLVVVP 45
+NP+G++ + LA L + EH + + E+ + V P
Sbjct: 174 NNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEH-FSPGRVAP 223
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.131 0.375
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,520,126
Number of extensions: 130270
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 21
Length of query: 168
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 81
Effective length of database: 4,272,666
Effective search space: 346085946
Effective search space used: 346085946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)