RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6087
         (168 letters)



>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 388

 Score =  158 bits (402), Expect = 2e-48
 Identities = 49/118 (41%), Positives = 78/118 (66%), Gaps = 3/118 (2%)

Query: 13  SGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVS 72
           +G L  R+L D+VK E F+L+SE+LTT+LV VP++  +++ ++YE L+  +VP S+ +++
Sbjct: 163 TGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIA 222

Query: 73  QDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEE---ELRNQVTEWVQNYEKL 127
           +D ++ L+ V LFKK   EF   AREKKFI REF Y+EE   +L+ +        + L
Sbjct: 223 EDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSL 280



 Score = 83.7 bits (207), Expect = 4e-20
 Identities = 19/55 (34%), Positives = 36/55 (65%)

Query: 114 RNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKN 168
           ++  +++ ++YE L+  +VP S+ ++++D ++ L+ V LFKK   EF   AREK 
Sbjct: 196 KSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFKKNVQEFTTAAREKK 250


>g1gxs.1 c.69.1.5 (A:,B:) Hydroxynitrile lyase {Sorghum (Sorghum
           bicolor) [TaxId: 4558]}
          Length = 425

 Score = 25.5 bits (55), Expect = 3.3
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 47  NQVTEWVQNYEKLTAMIVPRSSQLVSQDQ 75
            +V  W   YE LT + V  +  LV   +
Sbjct: 377 REVGGWSVQYEGLTYVTVRGAGHLVPVHR 405



 Score = 25.5 bits (55), Expect = 3.3
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 115 NQVTEWVQNYEKLTAMIVPRSSQLVSQDQ 143
            +V  W   YE LT + V  +  LV   +
Sbjct: 377 REVGGWSVQYEGLTYVTVRGAGHLVPVHR 405


>g1wht.1 c.69.1.5 (A:,B:) Serine carboxypeptidase II {Wheat
           (Triticum vulgare) [TaxId: 4565]}
          Length = 409

 Score = 25.5 bits (55), Expect = 3.7
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 47  NQVTEWVQNYEKLTAMIVPRSSQLVSQDQ 75
            +V  W Q Y+ LT + V  +   V   +
Sbjct: 361 QEVGGWSQVYKGLTLVSVRGAGHEVPLHR 389



 Score = 25.5 bits (55), Expect = 3.7
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 115 NQVTEWVQNYEKLTAMIVPRSSQLVSQDQ 143
            +V  W Q Y+ LT + V  +   V   +
Sbjct: 361 QEVGGWSQVYKGLTLVSVRGAGHEVPLHR 389


>d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 452

 Score = 25.6 bits (55), Expect = 4.2
 Identities = 5/40 (12%), Positives = 18/40 (45%)

Query: 104 REFVYNEEELRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQ 143
           R ++    +   Q+  +V+ +  +  + +  +  +V  D+
Sbjct: 396 RPWLVKYGDSGEQIAGFVKEFSHIAFLTIKGAGHMVPTDK 435



 Score = 25.2 bits (54), Expect = 5.5
 Identities = 4/29 (13%), Positives = 14/29 (48%)

Query: 47  NQVTEWVQNYEKLTAMIVPRSSQLVSQDQ 75
            Q+  +V+ +  +  + +  +  +V  D+
Sbjct: 407 EQIAGFVKEFSHIAFLTIKGAGHMVPTDK 435


>d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 421

 Score = 25.1 bits (54), Expect = 5.8
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 47  NQVTEWVQNYEKLTAMIVPRSSQLVSQDQ 75
           ++V   V++Y+  T + V     +V  D 
Sbjct: 375 DEVAGEVKSYKHFTYLRVFNGGHMVPFDV 403



 Score = 25.1 bits (54), Expect = 5.8
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 115 NQVTEWVQNYEKLTAMIVPRSSQLVSQDQ 143
           ++V   V++Y+  T + V     +V  D 
Sbjct: 375 DEVAGEVKSYKHFTYLRVFNGGHMVPFDV 403


>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase
           AadK {Bacillus subtilis [TaxId: 1423]}
          Length = 135

 Score = 23.7 bits (51), Expect = 9.2
 Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 6/46 (13%)

Query: 109 NEEELRNQVTEWVQNYEKLTAMIV------PRSSQLVSQDQDFALY 148
           +E+E+ +   ++  N E++  + +              QD D + +
Sbjct: 3   SEQEMMDIFLDFALNDERIRLVTLEGSRTNRNIPPDNFQDYDISYF 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 602,966
Number of extensions: 25572
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 20
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)