BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6088
(289 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q29076|PO2F1_PIG POU domain, class 2, transcription factor 1 OS=Sus scrofa GN=POU2F1
PE=2 SV=1
Length = 745
Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 111/151 (73%), Positives = 127/151 (84%), Gaps = 7/151 (4%)
Query: 140 TPARLLDP--DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF 197
TP R+ P +E +DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF
Sbjct: 270 TPKRIDTPSLEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF 329
Query: 198 EALNLSFKNMCKLKPLLQKWLSDA-----DSTTANPSCLSNPLTTPEAIGRRRKKRTSIE 252
EALNLSFKNMCKLKPLL+KWL+DA DS +PS L++P E + RRRKKRTSIE
Sbjct: 330 EALNLSFKNMCKLKPLLEKWLNDAENLSSDSALCSPSALNSPGLGVEGLNRRRKKRTSIE 389
Query: 253 TSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
T++RVALEK+FL+N KPTSEEI+++AD L M
Sbjct: 390 TNIRVALEKSFLENQKPTSEEITMIADQLNM 420
>sp|P16143|PO2F1_XENLA POU domain, class 2, transcription factor 1 OS=Xenopus laevis
GN=pou2f1 PE=1 SV=3
Length = 758
Score = 228 bits (582), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 112/151 (74%), Positives = 127/151 (84%), Gaps = 7/151 (4%)
Query: 140 TPARLLDP--DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF 197
TP R+ P +E +DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF
Sbjct: 284 TPKRIDTPSLEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF 343
Query: 198 EALNLSFKNMCKLKPLLQKWLSDA-----DSTTANPSCLSNPLTTPEAIGRRRKKRTSIE 252
EALNLSFKNMCKLKPLL+KWL+DA DST N S L++P E + RRRKKRTSIE
Sbjct: 344 EALNLSFKNMCKLKPLLEKWLNDAENITSDSTLTNQSVLNSPGHGMEGLNRRRKKRTSIE 403
Query: 253 TSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
T++RVALEK+FL+N KPTSEEI+++AD L M
Sbjct: 404 TNIRVALEKSFLENQKPTSEEITMIADQLNM 434
>sp|Q28BL7|PO2F1_XENTR POU domain, class 2, transcription factor 1 OS=Xenopus tropicalis
GN=pou2f1 PE=2 SV=1
Length = 757
Score = 228 bits (580), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 111/151 (73%), Positives = 128/151 (84%), Gaps = 7/151 (4%)
Query: 140 TPARLLDP--DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF 197
TP R+ P +E +DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF
Sbjct: 284 TPKRIDTPSLEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF 343
Query: 198 EALNLSFKNMCKLKPLLQKWLSDA-----DSTTANPSCLSNPLTTPEAIGRRRKKRTSIE 252
EALNLSFKNMCKLKPLL+KWL+DA DS+ +N S L++P E + RRRKKRTSIE
Sbjct: 344 EALNLSFKNMCKLKPLLEKWLNDAENITSDSSLSNQSVLNSPGHGMEGLNRRRKKRTSIE 403
Query: 253 TSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
T++RVALEK+FL+N KPTSEEI+++AD L M
Sbjct: 404 TNIRVALEKSFLENQKPTSEEITMIADQLNM 434
>sp|P15143|PO2F1_CHICK POU domain, class 2, transcription factor 1 OS=Gallus gallus
GN=POU2F1 PE=2 SV=1
Length = 739
Score = 220 bits (561), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 110/151 (72%), Positives = 129/151 (85%), Gaps = 7/151 (4%)
Query: 140 TPARLLDP--DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF 197
TP R+ P +E +DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF
Sbjct: 264 TPKRIDTPSLEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF 323
Query: 198 EALNLSFKNMCKLKPLLQKWLSDADS-----TTANPSCLSNPLTTPEAIGRRRKKRTSIE 252
EALNLSFKNMCKLKPLL+KWL+DA++ T ++PS L++P E + RRRKKRTSIE
Sbjct: 324 EALNLSFKNMCKLKPLLEKWLNDAENLSSDSTLSSPSALNSPGQGIEGVNRRRKKRTSIE 383
Query: 253 TSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
T++RVALEK+FL+N KPTSEEI+++AD L M
Sbjct: 384 TNIRVALEKSFLENQKPTSEEITMIADQLNM 414
>sp|P42571|PO2F3_RAT POU domain, class 2, transcription factor 3 OS=Rattus norvegicus
GN=Pou2f3 PE=2 SV=1
Length = 430
Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/139 (76%), Positives = 121/139 (87%), Gaps = 4/139 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
DE TDLEELE+FAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM
Sbjct: 176 DEPTDLEELEKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 235
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTP---EAIGRRRKKRTSIETSVRVALEKAFL 264
CKLKPLL+KWL+DA+S+ A+PS S P + P E GR+RKKRTSIET++R+ LEK F
Sbjct: 236 CKLKPLLEKWLNDAESSPADPSA-STPSSYPTLSEVFGRKRKKRTSIETNIRLTLEKRFQ 294
Query: 265 QNPKPTSEEISVLADNLCM 283
NPKP+SEEIS++A+ L M
Sbjct: 295 DNPKPSSEEISMIAEQLSM 313
>sp|Q9UKI9|PO2F3_HUMAN POU domain, class 2, transcription factor 3 OS=Homo sapiens
GN=POU2F3 PE=2 SV=3
Length = 436
Score = 218 bits (554), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/139 (74%), Positives = 122/139 (87%), Gaps = 4/139 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
DE +DLEELE+FAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM
Sbjct: 183 DEPSDLEELEKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 242
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTP---EAIGRRRKKRTSIETSVRVALEKAFL 264
CKLKPLL+KWL+DA+S+ ++PS +S P + P E GR+RKKRTSIET++R+ LEK F
Sbjct: 243 CKLKPLLEKWLNDAESSPSDPS-VSTPSSYPSLSEVFGRKRKKRTSIETNIRLTLEKRFQ 301
Query: 265 QNPKPTSEEISVLADNLCM 283
NPKP+SEEIS++A+ L M
Sbjct: 302 DNPKPSSEEISMIAEQLSM 320
>sp|P25425|PO2F1_MOUSE POU domain, class 2, transcription factor 1 OS=Mus musculus
GN=Pou2f1 PE=2 SV=3
Length = 770
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/151 (70%), Positives = 129/151 (85%), Gaps = 7/151 (4%)
Query: 140 TPARLLDP--DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF 197
TP R+ P +E +DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF
Sbjct: 271 TPKRIDTPSLEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF 330
Query: 198 EALNLSFKNMCKLKPLLQKWLSDADS-----TTANPSCLSNPLTTPEAIGRRRKKRTSIE 252
EALNLSFKNMCKLKPLL+KWL+DA++ T ++PS L++P E + RRRKKRTSIE
Sbjct: 331 EALNLSFKNMCKLKPLLEKWLNDAENLSSDSTASSPSALNSPGLGAEGLNRRRKKRTSIE 390
Query: 253 TSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
T++RVALEK+F++N KPTSE+I+++A+ L M
Sbjct: 391 TNIRVALEKSFMENQKPTSEDITLIAEQLNM 421
>sp|P31362|PO2F3_MOUSE POU domain, class 2, transcription factor 3 OS=Mus musculus
GN=Pou2f3 PE=2 SV=2
Length = 431
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/139 (74%), Positives = 120/139 (86%), Gaps = 4/139 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
DE TDLEELE+FAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM
Sbjct: 176 DEPTDLEELEKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 235
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTP---EAIGRRRKKRTSIETSVRVALEKAFL 264
CKLKPLL+KWL+D +S+ ++PS S P + P E GR+RKKRTSIET++R+ LEK F
Sbjct: 236 CKLKPLLEKWLNDPESSPSDPSA-STPSSYPTLSEVFGRKRKKRTSIETNIRLTLEKRFQ 294
Query: 265 QNPKPTSEEISVLADNLCM 283
NPKP+SEEIS++A+ L M
Sbjct: 295 DNPKPSSEEISMIAEQLSM 313
>sp|P14859|PO2F1_HUMAN POU domain, class 2, transcription factor 1 OS=Homo sapiens
GN=POU2F1 PE=1 SV=2
Length = 743
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/149 (71%), Positives = 125/149 (83%), Gaps = 5/149 (3%)
Query: 140 TPARLLDP--DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF 197
TP R+ P +E +DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF
Sbjct: 270 TPKRIDTPSLEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF 329
Query: 198 EALNLSFKNMCKLKPLLQKWLSDADSTTANPSCLSNPLTTP---EAIGRRRKKRTSIETS 254
EALNLSFKNMCKLKPLL+KWL+DA++ +++ S S E + RRRKKRTSIET+
Sbjct: 330 EALNLSFKNMCKLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETN 389
Query: 255 VRVALEKAFLQNPKPTSEEISVLADNLCM 283
+RVALEK+FL+N KPTSEEI+++AD L M
Sbjct: 390 IRVALEKSFLENQKPTSEEITMIADQLNM 418
>sp|P31368|PDM1_DROME Protein nubbin OS=Drosophila melanogaster GN=nub PE=2 SV=1
Length = 601
Score = 214 bits (544), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 104/132 (78%), Positives = 111/132 (84%), Gaps = 6/132 (4%)
Query: 158 QFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKW 217
QFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKW
Sbjct: 431 QFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKW 490
Query: 218 LSDADST------TANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTS 271
L DAD T +P+ L ++TPE IGRRRKKRTSIET++R ALEKAFL N KPTS
Sbjct: 491 LDDADRTIQATGGVFDPAALQATVSTPEIIGRRRKKRTSIETTIRGALEKAFLANQKPTS 550
Query: 272 EEISVLADNLCM 283
EEI+ LAD L M
Sbjct: 551 EEITQLADRLSM 562
>sp|Q29013|PO2F2_PIG POU domain, class 2, transcription factor 2 OS=Sus scrofa GN=POU2F2
PE=2 SV=1
Length = 478
Score = 212 bits (539), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/143 (74%), Positives = 121/143 (84%), Gaps = 6/143 (4%)
Query: 147 PDETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKN 206
P+E +DLEELEQFA+TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKN
Sbjct: 194 PEEASDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKN 253
Query: 207 MCKLKPLLQKWLSDA-----DSTTANPSCLSNPLTTPEAI-GRRRKKRTSIETSVRVALE 260
MCKLKPLL+KWL+DA DS+ +P+ LS P + + GRRRKKRTSIET+VR ALE
Sbjct: 254 MCKLKPLLEKWLNDAETMSVDSSLPSPNQLSRPSLGFDGLPGRRRKKRTSIETNVRFALE 313
Query: 261 KAFLQNPKPTSEEISVLADNLCM 283
K+FL N KPTSEEI ++A+ L M
Sbjct: 314 KSFLANQKPTSEEILLIAEQLHM 336
>sp|P09086|PO2F2_HUMAN POU domain, class 2, transcription factor 2 OS=Homo sapiens
GN=POU2F2 PE=1 SV=3
Length = 479
Score = 212 bits (539), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/143 (74%), Positives = 122/143 (85%), Gaps = 6/143 (4%)
Query: 147 PDETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKN 206
P+E +DLEELEQFA+TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKN
Sbjct: 194 PEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKN 253
Query: 207 MCKLKPLLQKWLSDA-----DSTTANPSCLSNPLTTPEAI-GRRRKKRTSIETSVRVALE 260
MCKLKPLL+KWL+DA DS+ +P+ LS+P + + GRRRKKRTSIET+VR ALE
Sbjct: 254 MCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFALE 313
Query: 261 KAFLQNPKPTSEEISVLADNLCM 283
K+FL N KPTSEEI ++A+ L M
Sbjct: 314 KSFLANQKPTSEEILLIAEQLHM 336
>sp|Q00196|PO2F2_MOUSE POU domain, class 2, transcription factor 2 OS=Mus musculus
GN=Pou2f2 PE=2 SV=4
Length = 463
Score = 211 bits (538), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/143 (74%), Positives = 122/143 (85%), Gaps = 6/143 (4%)
Query: 147 PDETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKN 206
P+E +DLEELEQFA+TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKN
Sbjct: 178 PEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKN 237
Query: 207 MCKLKPLLQKWLSDA-----DSTTANPSCLSNPLTTPEAI-GRRRKKRTSIETSVRVALE 260
MCKLKPLL+KWL+DA DS+ +P+ LS+P + + GRRRKKRTSIET+VR ALE
Sbjct: 238 MCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIETNVRFALE 297
Query: 261 KAFLQNPKPTSEEISVLADNLCM 283
K+FL N KPTSEEI ++A+ L M
Sbjct: 298 KSFLANQKPTSEEILLIAEQLHM 320
>sp|P31503|PO2F1_RAT POU domain, class 2, transcription factor 1 (Fragment) OS=Rattus
norvegicus GN=Pou2f1 PE=2 SV=2
Length = 632
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 132/280 (47%), Positives = 168/280 (60%), Gaps = 55/280 (19%)
Query: 59 SASQQNASSSAANSPTGLPPQAQFFLQNQVQQA--------------------------- 91
SASQQ++++ A S + P Q L +Q A
Sbjct: 28 SASQQHSAAGATISASAATPMTQIPLSQPIQIAQDLQQLQQLQQQNLNLQQFVLVHPTTN 87
Query: 92 -------VAQAAQQ----------LQQLQKQSHHHHQKLSPQSQQSGNTTPPSSNI-RVP 133
++Q Q L QL +QS + + P + T P+ I P
Sbjct: 88 LQPAQFIISQTPQGQQGLLQAQNLLTQLPQQSQANLLQPQPSITLTSQPTTPTRTIAATP 147
Query: 134 AHHIKQ---TPARLLDP--DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGND 188
+ Q TP R+ P +E +DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGND
Sbjct: 148 IQTLPQSQTTPKRIDTPSLEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGND 207
Query: 189 FSQTTISRFEALNLSFKNMCKLKPLLQKWLSDADS-----TTANPSCLSNPLTTPEAIGR 243
FSQTTISRFEALNLSFKNMCKLKPLL+KWL+DA++ T ++PS L++P E + R
Sbjct: 208 FSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAENLSSDSTASSPSALNSPGLGAEGLNR 267
Query: 244 RRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
RRKKRTSIET++RVALEK+F++N KPTSE+I+++A+ L M
Sbjct: 268 RRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNM 307
>sp|P31369|PDM2A_DROME POU domain protein 2, isoform A OS=Drosophila melanogaster GN=pdm2
PE=1 SV=1
Length = 498
Score = 204 bits (520), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 105/136 (77%), Positives = 115/136 (84%), Gaps = 9/136 (6%)
Query: 158 QFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKW 217
QFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKW
Sbjct: 296 QFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKW 355
Query: 218 LSDADSTTA-------NPSCLSNPL-TTPEAI-GRRRKKRTSIETSVRVALEKAFLQNPK 268
L DADST A N + +++ L +TPE+I GRRRKKRTSIET+VR LEKAFL N K
Sbjct: 356 LEDADSTVAKSGGGVFNINTMTSTLSSTPESILGRRRKKRTSIETTVRTTLEKAFLMNCK 415
Query: 269 PTSEEISVLADNLCMN 284
PTSEEIS L++ L M+
Sbjct: 416 PTSEEISQLSERLNMD 431
>sp|Q9VK71|PDM2B_DROME POU domain protein 2, isoform B OS=Drosophila melanogaster GN=pdm2
PE=2 SV=2
Length = 893
Score = 204 bits (518), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 105/136 (77%), Positives = 115/136 (84%), Gaps = 9/136 (6%)
Query: 158 QFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKW 217
QFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKW
Sbjct: 691 QFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKW 750
Query: 218 LSDADSTTA-------NPSCLSNPL-TTPEAI-GRRRKKRTSIETSVRVALEKAFLQNPK 268
L DADST A N + +++ L +TPE+I GRRRKKRTSIET+VR LEKAFL N K
Sbjct: 751 LEDADSTVAKSGGGVFNINTMTSTLSSTPESILGRRRKKRTSIETTVRTTLEKAFLMNCK 810
Query: 269 PTSEEISVLADNLCMN 284
PTSEEIS L++ L M+
Sbjct: 811 PTSEEISQLSERLNMD 826
>sp|Q24705|PDM2_DROVI POU domain protein 2 (Fragment) OS=Drosophila virilis GN=pdm2 PE=2
SV=1
Length = 471
Score = 198 bits (503), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 100/136 (73%), Positives = 113/136 (83%), Gaps = 9/136 (6%)
Query: 158 QFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKW 217
QFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKW
Sbjct: 267 QFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKW 326
Query: 218 LSDADSTTANP--------SCLSNPLTTPEAI-GRRRKKRTSIETSVRVALEKAFLQNPK 268
L DADS+ A + +N +TPE+I GRRRKKRTSIET++R ALE+AF+ N K
Sbjct: 327 LEDADSSVAKSAGGVFNINTMTTNLSSTPESILGRRRKKRTSIETTIRGALEQAFVLNCK 386
Query: 269 PTSEEISVLADNLCMN 284
PTSEEI+ L++ L M+
Sbjct: 387 PTSEEINQLSERLHMD 402
>sp|P56224|P3F3A_DANRE POU domain, class 3, transcription factor 3-A OS=Danio rerio
GN=pou3f3a PE=2 SV=2
Length = 438
Score = 183 bits (465), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/134 (67%), Positives = 106/134 (79%), Gaps = 4/134 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
++T ++LEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 242 EDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 301
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNP 267
CKLKPLL KWL +ADSTT +P+ + A GR+RKKRTSIE SV+ ALE FL+ P
Sbjct: 302 CKLKPLLNKWLEEADSTTGSPTSIDK----IAAQGRKRKKRTSIEVSVKGALESHFLKCP 357
Query: 268 KPTSEEISVLADNL 281
KP+++EI+ LADNL
Sbjct: 358 KPSAQEITSLADNL 371
>sp|P16241|CF1A_DROME POU domain protein CF1A OS=Drosophila melanogaster GN=vvl PE=2 SV=5
Length = 427
Score = 182 bits (463), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/134 (65%), Positives = 106/134 (79%), Gaps = 4/134 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
++T ++LE FAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 212 EDTPTSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 271
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNP 267
CKLKPLLQKWL +ADSTT +P+ + A GR+RKKRTSIE SV+ ALE+ F + P
Sbjct: 272 CKLKPLLQKWLEEADSTTGSPTSIDK----IAAQGRKRKKRTSIEVSVKGALEQHFHKQP 327
Query: 268 KPTSEEISVLADNL 281
KP+++EI+ LAD+L
Sbjct: 328 KPSAQEITSLADSL 341
>sp|P31364|P3F4A_XENLA POU domain, class 3, transcription factor 4-A OS=Xenopus laevis
GN=pou3f4-a PE=2 SV=2
Length = 361
Score = 182 bits (461), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/156 (59%), Positives = 112/156 (71%), Gaps = 9/156 (5%)
Query: 126 PSSNIRVPAHHIKQTPARLLDPDETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLY 185
P+ ++ + +HH + +ET +ELEQFAK FKQRRIKLGFTQ DVGLA+G LY
Sbjct: 169 PNDHVDLGSHHCQDH-----SDEETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLY 223
Query: 186 GNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRR 245
GN FSQTTI RFEAL LSFKNMCKLKPLL KWL +ADS+T NP+ + A GR+R
Sbjct: 224 GNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSTGNPTSIDK----IAAQGRKR 279
Query: 246 KKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNL 281
KKRTSIE SV+ LE FL+ PKP + EI+ LAD+L
Sbjct: 280 KKRTSIEVSVKGVLETHFLKCPKPAALEITSLADSL 315
>sp|P79745|P3F3B_DANRE POU domain, class 3, transcription factor 3-B OS=Danio rerio
GN=pou3f3b PE=1 SV=1
Length = 443
Score = 181 bits (460), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/134 (65%), Positives = 105/134 (78%), Gaps = 4/134 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
++T ++LE FAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 238 EDTPTSDDLEHFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 297
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNP 267
CKLKPLL KWL +ADS+T +P+ + A GR+RKKRTSIE SV+ ALE FL+ P
Sbjct: 298 CKLKPLLNKWLEEADSSTGSPTSIDK----IAAQGRKRKKRTSIEVSVKGALESHFLKCP 353
Query: 268 KPTSEEISVLADNL 281
KP+++EI+ LADNL
Sbjct: 354 KPSAQEITSLADNL 367
>sp|P62516|PO3F4_RAT POU domain, class 3, transcription factor 4 OS=Rattus norvegicus
GN=Pou3f4 PE=2 SV=1
Length = 361
Score = 181 bits (459), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 90/134 (67%), Positives = 104/134 (77%), Gaps = 4/134 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
+ET +ELEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 186 EETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 245
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNP 267
CKLKPLL KWL +ADS+T +P+ + A GR+RKKRTSIE SV+ LE FL+ P
Sbjct: 246 CKLKPLLNKWLEEADSSTGSPTSIDK----IAAQGRKRKKRTSIEVSVKGVLETHFLKCP 301
Query: 268 KPTSEEISVLADNL 281
KP ++EIS LAD+L
Sbjct: 302 KPAAQEISSLADSL 315
>sp|P62515|PO3F4_MOUSE POU domain, class 3, transcription factor 4 OS=Mus musculus
GN=Pou3f4 PE=2 SV=1
Length = 361
Score = 181 bits (459), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 90/134 (67%), Positives = 104/134 (77%), Gaps = 4/134 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
+ET +ELEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 186 EETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 245
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNP 267
CKLKPLL KWL +ADS+T +P+ + A GR+RKKRTSIE SV+ LE FL+ P
Sbjct: 246 CKLKPLLNKWLEEADSSTGSPTSIDK----IAAQGRKRKKRTSIEVSVKGVLETHFLKCP 301
Query: 268 KPTSEEISVLADNL 281
KP ++EIS LAD+L
Sbjct: 302 KPAAQEISSLADSL 315
>sp|Q812B1|PO3F4_MESAU POU domain, class 3, transcription factor 4 OS=Mesocricetus auratus
GN=Pou3f4 PE=2 SV=1
Length = 361
Score = 181 bits (459), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 90/134 (67%), Positives = 104/134 (77%), Gaps = 4/134 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
+ET +ELEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 186 EETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 245
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNP 267
CKLKPLL KWL +ADS+T +P+ + A GR+RKKRTSIE SV+ LE FL+ P
Sbjct: 246 CKLKPLLNKWLEEADSSTGSPTSIDK----IAAQGRKRKKRTSIEVSVKGVLETHFLKCP 301
Query: 268 KPTSEEISVLADNL 281
KP ++EIS LAD+L
Sbjct: 302 KPAAQEISSLADSL 315
>sp|P79746|PO3F2_DANRE POU domain, class 3, transcription factor 2 OS=Danio rerio
GN=pou3f2 PE=1 SV=1
Length = 378
Score = 181 bits (458), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 89/134 (66%), Positives = 104/134 (77%), Gaps = 4/134 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
++T ++LEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 200 EDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 259
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNP 267
CKLKPLL KWL +ADST+ +P+ L A GR+RKKRTSIE SV+ ALE FL+ P
Sbjct: 260 CKLKPLLNKWLEEADSTSGSPTSLDK----IAAQGRKRKKRTSIEVSVKGALESHFLKCP 315
Query: 268 KPTSEEISVLADNL 281
KP + EI+ LAD+L
Sbjct: 316 KPAASEITSLADSL 329
>sp|Q17237|SGF3_BOMMO Silk gland factor 3 OS=Bombyx mori GN=SGF3 PE=2 SV=1
Length = 351
Score = 180 bits (457), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 94/155 (60%), Positives = 114/155 (73%), Gaps = 6/155 (3%)
Query: 127 SSNIRVPAHHIKQTPARLLDPDETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYG 186
+S+ R P HH R ++T ++LE FAK FKQRRIKLGFTQ DVGLA+G LYG
Sbjct: 130 TSSPRDPLHHHAME--RDQPEEDTPTSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYG 187
Query: 187 NDFSQTTISRFEALNLSFKNMCKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRK 246
N FSQTTI RFEAL LSFKNMCKLKPLLQKWL +ADSTT +P+ + A GR+RK
Sbjct: 188 NVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGSPTSIDKIA----AQGRKRK 243
Query: 247 KRTSIETSVRVALEKAFLQNPKPTSEEISVLADNL 281
KRTSIE SV+ ALE+ F + PKP+++EI+ LAD+L
Sbjct: 244 KRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSL 278
>sp|Q63262|PO3F3_RAT POU domain, class 3, transcription factor 3 OS=Rattus norvegicus
GN=Pou3f3 PE=1 SV=2
Length = 497
Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/134 (65%), Positives = 106/134 (79%), Gaps = 4/134 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
++T ++LEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 311 EDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 370
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNP 267
CKLKPLL KWL +ADS+T +P+ + A GR+RKKRTSIE SV+ ALE FL+ P
Sbjct: 371 CKLKPLLNKWLEEADSSTGSPTSIDK----IAAQGRKRKKRTSIEVSVKGALESHFLKCP 426
Query: 268 KPTSEEISVLADNL 281
KP+++EI+ LAD+L
Sbjct: 427 KPSAQEITNLADSL 440
>sp|P49335|PO3F4_HUMAN POU domain, class 3, transcription factor 4 OS=Homo sapiens
GN=POU3F4 PE=1 SV=2
Length = 361
Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/134 (66%), Positives = 103/134 (76%), Gaps = 4/134 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
+ET +ELEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFE L LSFKNM
Sbjct: 186 EETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEGLQLSFKNM 245
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNP 267
CKLKPLL KWL +ADS+T +P+ + A GR+RKKRTSIE SV+ LE FL+ P
Sbjct: 246 CKLKPLLNKWLEEADSSTGSPTSIDK----IAAQGRKRKKRTSIEVSVKGVLETHFLKCP 301
Query: 268 KPTSEEISVLADNL 281
KP ++EIS LAD+L
Sbjct: 302 KPAAQEISSLADSL 315
>sp|P31361|PO3F3_MOUSE POU domain, class 3, transcription factor 3 OS=Mus musculus
GN=Pou3f3 PE=2 SV=2
Length = 497
Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/134 (65%), Positives = 106/134 (79%), Gaps = 4/134 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
++T ++LEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 311 EDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 370
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNP 267
CKLKPLL KWL +ADS+T +P+ + A GR+RKKRTSIE SV+ ALE FL+ P
Sbjct: 371 CKLKPLLNKWLEEADSSTGSPTSIDK----IAAQGRKRKKRTSIEVSVKGALESHFLKCP 426
Query: 268 KPTSEEISVLADNL 281
KP+++EI+ LAD+L
Sbjct: 427 KPSAQEITNLADSL 440
>sp|P20264|PO3F3_HUMAN POU domain, class 3, transcription factor 3 OS=Homo sapiens
GN=POU3F3 PE=2 SV=2
Length = 500
Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/134 (65%), Positives = 106/134 (79%), Gaps = 4/134 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
++T ++LEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 314 EDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 373
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNP 267
CKLKPLL KWL +ADS+T +P+ + A GR+RKKRTSIE SV+ ALE FL+ P
Sbjct: 374 CKLKPLLNKWLEEADSSTGSPTSIDK----IAAQGRKRKKRTSIEVSVKGALESHFLKCP 429
Query: 268 KPTSEEISVLADNL 281
KP+++EI+ LAD+L
Sbjct: 430 KPSAQEITNLADSL 443
>sp|A1L0Z1|PO3F4_XENTR POU domain, class 3, transcription factor 4 OS=Xenopus tropicalis
GN=pou3f4 PE=2 SV=1
Length = 360
Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 113/173 (65%), Gaps = 14/173 (8%)
Query: 119 QSGNTTPPSSNIRVPAHHIKQTPARLLD----------PDETTDLEELEQFAKTFKQRRI 168
G T PP S H + + P D +ET +ELEQFAK FKQRRI
Sbjct: 146 HGGLTPPPPSGTTQSLHPVLREPVDHGDLGSHHCQDHSDEETPTSDELEQFAKQFKQRRI 205
Query: 169 KLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLSDADSTTANP 228
KLGFTQ DVGLA+G LYGN FSQ TI RFEAL LSFKNMCKLKPLL KWL +ADS+T +P
Sbjct: 206 KLGFTQADVGLALGTLYGNVFSQATICRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSP 265
Query: 229 SCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNL 281
+ + A GR+RKKRTSIE SV+ LE FL+ PKP ++EIS LAD+L
Sbjct: 266 TSIDK----IAAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSL 314
>sp|Q6DJN3|P3F4B_XENLA POU domain, class 3, transcription factor 4-B OS=Xenopus laevis
GN=pou3f4-b PE=2 SV=1
Length = 356
Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/134 (67%), Positives = 103/134 (76%), Gaps = 4/134 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
+ET +ELEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 181 EETPTSDELEQFAKLFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 240
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNP 267
CKLKPLL KWL +ADS+T +P+ + A GR+RKKRTSIE SV+ LE FL+ P
Sbjct: 241 CKLKPLLNKWLEEADSSTGSPTSIDK----IAAQGRKRKKRTSIEVSVKGVLETHFLKCP 296
Query: 268 KPTSEEISVLADNL 281
KP + EIS LAD+L
Sbjct: 297 KPAALEISSLADSL 310
>sp|P70030|P3F2B_XENLA POU domain, class 3, transcription factor 2-B OS=Xenopus laevis
GN=pou3f2-b PE=2 SV=1
Length = 385
Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/134 (64%), Positives = 105/134 (78%), Gaps = 4/134 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
++T ++LEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 204 EDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 263
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNP 267
CKLKPLL KWL +ADS++ +P+ + A GR+RKKRTSIE SV+ ALE FL+ P
Sbjct: 264 CKLKPLLNKWLEEADSSSGSPTSIDK----IAAQGRKRKKRTSIEVSVKGALESHFLKCP 319
Query: 268 KPTSEEISVLADNL 281
KP ++EI+ LAD+L
Sbjct: 320 KPAAQEITSLADSL 333
>sp|P31360|PO3F2_MOUSE POU domain, class 3, transcription factor 2 OS=Mus musculus
GN=Pou3f2 PE=2 SV=1
Length = 445
Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/134 (64%), Positives = 106/134 (79%), Gaps = 4/134 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
++T ++LEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 264 EDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 323
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNP 267
CKLKPLL KWL +ADS++ +P+ + A GR+RKKRTSIE SV+ ALE FL+ P
Sbjct: 324 CKLKPLLNKWLEEADSSSGSPTSIDK----IAAQGRKRKKRTSIEVSVKGALESHFLKCP 379
Query: 268 KPTSEEISVLADNL 281
KP+++EI+ LAD+L
Sbjct: 380 KPSAQEITSLADSL 393
>sp|P20265|PO3F2_HUMAN POU domain, class 3, transcription factor 2 OS=Homo sapiens
GN=POU3F2 PE=1 SV=4
Length = 443
Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/134 (64%), Positives = 106/134 (79%), Gaps = 4/134 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
++T ++LEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 262 EDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 321
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNP 267
CKLKPLL KWL +ADS++ +P+ + A GR+RKKRTSIE SV+ ALE FL+ P
Sbjct: 322 CKLKPLLNKWLEEADSSSGSPTSIDK----IAAQGRKRKKRTSIEVSVKGALESHFLKCP 377
Query: 268 KPTSEEISVLADNL 281
KP+++EI+ LAD+L
Sbjct: 378 KPSAQEITSLADSL 391
>sp|P31363|P3F1A_XENLA POU domain, class 3, transcription factor 1-A OS=Xenopus laevis
GN=pou3f1-a PE=2 SV=2
Length = 375
Score = 179 bits (453), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/128 (67%), Positives = 100/128 (78%), Gaps = 4/128 (3%)
Query: 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPL 213
++LEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNMCKLKPL
Sbjct: 200 DDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPL 259
Query: 214 LQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEE 273
L KWL + DSTT +P+ L A GR+RKKRTSIE V+ ALE FL+ PKP++ E
Sbjct: 260 LNKWLEETDSTTGSPTNLDK----IAAQGRKRKKRTSIEVGVKGALENHFLKCPKPSAHE 315
Query: 274 ISVLADNL 281
I+ LAD+L
Sbjct: 316 ITSLADSL 323
>sp|Q561L5|P3F1B_XENLA POU domain, class 3, transcription factor 1-B OS=Xenopus laevis
GN=pou3f1-b PE=2 SV=1
Length = 375
Score = 179 bits (453), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/128 (67%), Positives = 100/128 (78%), Gaps = 4/128 (3%)
Query: 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPL 213
++LEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNMCKLKPL
Sbjct: 200 DDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPL 259
Query: 214 LQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEE 273
L KWL + DSTT +P+ L A GR+RKKRTSIE V+ ALE FL+ PKP++ E
Sbjct: 260 LNKWLEETDSTTGSPTNLDK----IAAQGRKRKKRTSIEVGVKGALENHFLKCPKPSAHE 315
Query: 274 ISVLADNL 281
I+ LAD+L
Sbjct: 316 ITSLADSL 323
>sp|Q4QQQ7|PO3F1_XENTR POU domain, class 3, transcription factor 1 OS=Xenopus tropicalis
GN=pou3f1 PE=2 SV=1
Length = 375
Score = 178 bits (452), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/128 (67%), Positives = 100/128 (78%), Gaps = 4/128 (3%)
Query: 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPL 213
++LEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNMCKLKPL
Sbjct: 200 DDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPL 259
Query: 214 LQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEE 273
L KWL + DSTT +P+ L A GR+RKKRTSIE V+ ALE FL+ PKP++ E
Sbjct: 260 LNKWLEETDSTTGSPTNLDK----IAAQGRKRKKRTSIEVGVKGALENHFLKCPKPSAHE 315
Query: 274 ISVLADNL 281
I+ LAD+L
Sbjct: 316 ITSLADSL 323
>sp|P56222|PO3F2_RAT POU domain, class 3, transcription factor 2 OS=Rattus norvegicus
GN=Pou3f2 PE=2 SV=1
Length = 445
Score = 178 bits (452), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/134 (64%), Positives = 106/134 (79%), Gaps = 4/134 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
++T ++LEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 264 EDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 323
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNP 267
CKLKPLL KWL +ADS++ +P+ + + GR+RKKRTSIE SV+ ALE FL+ P
Sbjct: 324 CKLKPLLNKWLEEADSSSGSPTSIDKIASQ----GRKRKKRTSIEVSVKGALESHFLKCP 379
Query: 268 KPTSEEISVLADNL 281
KP+++EI+ LAD+L
Sbjct: 380 KPSAQEITSLADSL 393
>sp|P31365|P3F2A_XENLA POU domain, class 3, transcription factor 2-A OS=Xenopus laevis
GN=pou3f2-a PE=2 SV=2
Length = 382
Score = 178 bits (451), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/134 (64%), Positives = 105/134 (78%), Gaps = 4/134 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
++T ++LEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNM
Sbjct: 201 EDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNM 260
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNP 267
CKLKPLL KWL +ADS++ +P+ + A GR+RKKRTSIE SV+ ALE FL+ P
Sbjct: 261 CKLKPLLNKWLEEADSSSGSPTSIDK----IAAQGRKRKKRTSIEVSVKGALESHFLKCP 316
Query: 268 KPTSEEISVLADNL 281
KP++ EI+ LAD+L
Sbjct: 317 KPSAPEITSLADSL 330
>sp|Q03052|PO3F1_HUMAN POU domain, class 3, transcription factor 1 OS=Homo sapiens
GN=POU3F1 PE=2 SV=3
Length = 451
Score = 174 bits (442), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 85/128 (66%), Positives = 100/128 (78%), Gaps = 4/128 (3%)
Query: 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPL 213
++LEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNMCKLKPL
Sbjct: 253 DDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPL 312
Query: 214 LQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEE 273
L KWL + DS++ +P+ L A GR+RKKRTSIE V+ ALE FL+ PKP++ E
Sbjct: 313 LNKWLEETDSSSGSPTNLDK----IAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHE 368
Query: 274 ISVLADNL 281
I+ LAD+L
Sbjct: 369 ITGLADSL 376
>sp|Q90482|PO3F1_DANRE POU domain, class 3, transcription factor 1 OS=Danio rerio
GN=pou3f1 PE=2 SV=1
Length = 368
Score = 174 bits (442), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 85/128 (66%), Positives = 97/128 (75%), Gaps = 4/128 (3%)
Query: 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPL 213
++LEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNMCKLKPL
Sbjct: 193 DDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPL 252
Query: 214 LQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEE 273
L KWL + DS T +P+ L A GR+RKKRTSIE V+ ALE FL+ PKP++ E
Sbjct: 253 LNKWLEETDSNTGSPTNLDK----IAAQGRKRKKRTSIEVGVKGALENHFLKCPKPSAHE 308
Query: 274 ISVLADNL 281
I+ LA L
Sbjct: 309 ITTLAGTL 316
>sp|P21952|PO3F1_MOUSE POU domain, class 3, transcription factor 1 OS=Mus musculus
GN=Pou3f1 PE=1 SV=1
Length = 449
Score = 174 bits (441), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 85/128 (66%), Positives = 100/128 (78%), Gaps = 4/128 (3%)
Query: 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPL 213
++LEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNMCKLKPL
Sbjct: 251 DDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPL 310
Query: 214 LQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEE 273
L KWL + DS++ +P+ L A GR+RKKRTSIE V+ ALE FL+ PKP++ E
Sbjct: 311 LNKWLEETDSSSGSPTNLDK----IAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHE 366
Query: 274 ISVLADNL 281
I+ LAD+L
Sbjct: 367 ITGLADSL 374
>sp|P20267|PO3F1_RAT POU domain, class 3, transcription factor 1 OS=Rattus norvegicus
GN=Pou3f1 PE=2 SV=2
Length = 451
Score = 174 bits (441), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 85/128 (66%), Positives = 100/128 (78%), Gaps = 4/128 (3%)
Query: 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPL 213
++LEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNMCKLKPL
Sbjct: 253 DDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPL 312
Query: 214 LQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEE 273
L KWL + DS++ +P+ L A GR+RKKRTSIE V+ ALE FL+ PKP++ E
Sbjct: 313 LNKWLEETDSSSGSPTNLDK----IAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHE 368
Query: 274 ISVLADNL 281
I+ LAD+L
Sbjct: 369 ITGLADSL 376
>sp|P31370|POU1_DUGJA POU domain protein 1 OS=Dugesia japonica GN=POU1 PE=2 SV=1
Length = 559
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/138 (59%), Positives = 105/138 (76%), Gaps = 7/138 (5%)
Query: 149 ETTDL---EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFK 205
+T DL ++LEQFAK FKQRRIKLG+TQ DVGLA+G LYGN FSQTTI RFEAL LSFK
Sbjct: 257 KTEDLPSSDDLEQFAKMFKQRRIKLGYTQADVGLALGTLYGNVFSQTTICRFEALQLSFK 316
Query: 206 NMCKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQ 265
NMCKL+PLLQKWL +ADS++ +P+ A R+RKKRTSIE +V+ LE +F++
Sbjct: 317 NMCKLRPLLQKWLHEADSSSESPT----NFDKISAQSRKRKKRTSIEANVKSILESSFMK 372
Query: 266 NPKPTSEEISVLADNLCM 283
KP++++IS LA+ L +
Sbjct: 373 LSKPSAQDISSLAEKLSL 390
>sp|P20268|HM06_CAEEL Homeobox protein ceh-6 OS=Caenorhabditis elegans GN=ceh-6 PE=2 SV=3
Length = 380
Score = 162 bits (410), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/136 (61%), Positives = 99/136 (72%), Gaps = 2/136 (1%)
Query: 146 DPDETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFK 205
D E T ++LE FAK FKQRRIKLG+TQ DVG+A+G LYGN FSQTTI RFEAL LSFK
Sbjct: 185 DDSEQTCPDDLEGFAKQFKQRRIKLGYTQADVGVALGTLYGNIFSQTTICRFEALQLSFK 244
Query: 206 NMCKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQ 265
NMCKLKPLL KWL +ADSTT +P+ +T GR+RKKRTSIE +V+ LE F
Sbjct: 245 NMCKLKPLLFKWLEEADSTTGSPNSTFEKMTG--QAGRKRKKRTSIEVNVKSRLEFHFQS 302
Query: 266 NPKPTSEEISVLADNL 281
N KP ++EI+ +A L
Sbjct: 303 NQKPNAQEITQVAMEL 318
>sp|Q29087|PO3F3_PIG POU domain, class 3, transcription factor 3 (Fragment) OS=Sus
scrofa GN=POU3F3 PE=2 SV=1
Length = 131
Score = 161 bits (407), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 79/119 (66%), Positives = 94/119 (78%), Gaps = 4/119 (3%)
Query: 163 FKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLSDAD 222
F QRR+KLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKNMCKLKPLL KWL +AD
Sbjct: 1 FTQRRMKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEAD 60
Query: 223 STTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNL 281
S+T +P+ + A GR+RKKRTSIE SV+ ALE FL+ PKP+++EI+ LAD+L
Sbjct: 61 SSTGSPT----SIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITNLADSL 115
>sp|P20912|PO2F3_XENLA POU domain, class 2, transcription factor 3 (Fragment) OS=Xenopus
laevis GN=pou2f3 PE=3 SV=1
Length = 111
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 91/113 (80%), Gaps = 6/113 (5%)
Query: 174 QGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLSDADS----TTANPS 229
QGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLL+KWL+DA+S T PS
Sbjct: 1 QGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAESAPSDTALTPS 60
Query: 230 CLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLC 282
+N E GR+RKKRTSIET++R+ LEK F NPKP+SEEIS++A+ L
Sbjct: 61 --ANYAQLSEMFGRKRKKRTSIETNIRLTLEKRFQDNPKPSSEEISMIAEQLV 111
>sp|Q5TM49|PO5F1_MACMU POU domain, class 5, transcription factor 1 OS=Macaca mulatta
GN=POU5F1 PE=1 SV=1
Length = 360
Score = 145 bits (365), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 102/155 (65%), Gaps = 9/155 (5%)
Query: 132 VPAHHIKQTPARLL-DPDETTDLE----ELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYG 186
VP +K +L +P+E+ D++ ELEQFAK KQ+RI LG+TQ DVGL +G L+G
Sbjct: 117 VPTGAVKLEKEKLEQNPEESQDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFG 176
Query: 187 NDFSQTTISRFEALNLSFKNMCKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRK 246
FSQTTI RFEAL LSFKNMCKL+PLLQKW+ +AD N L + R++
Sbjct: 177 KVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEAD----NNENLQEICKAETLVQARKR 232
Query: 247 KRTSIETSVRVALEKAFLQNPKPTSEEISVLADNL 281
KRTSIE VR +LE FLQ PKPT ++IS +A L
Sbjct: 233 KRTSIENRVRGSLENLFLQCPKPTLQQISHIAQQL 267
>sp|Q01860|PO5F1_HUMAN POU domain, class 5, transcription factor 1 OS=Homo sapiens
GN=POU5F1 PE=1 SV=1
Length = 360
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/140 (55%), Positives = 95/140 (67%), Gaps = 8/140 (5%)
Query: 146 DPDETTDLE----ELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALN 201
+P+E+ D++ ELEQFAK KQ+RI LG+TQ DVGL +G L+G FSQTTI RFEAL
Sbjct: 132 NPEESQDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQ 191
Query: 202 LSFKNMCKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEK 261
LSFKNMCKL+PLLQKW+ +AD N L + R++KRTSIE VR LE
Sbjct: 192 LSFKNMCKLRPLLQKWVEEAD----NNENLQEICKAETLVQARKRKRTSIENRVRGNLEN 247
Query: 262 AFLQNPKPTSEEISVLADNL 281
FLQ PKPT ++IS +A L
Sbjct: 248 LFLQCPKPTLQQISHIAQQL 267
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.124 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,777,453
Number of Sequences: 539616
Number of extensions: 3807726
Number of successful extensions: 23085
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 447
Number of HSP's that attempted gapping in prelim test: 15889
Number of HSP's gapped (non-prelim): 3954
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)