Query psy6088
Match_columns 289
No_of_seqs 201 out of 365
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 17:18:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xsd_C POU domain, class 3, tr 100.0 3E-48 1E-52 333.7 10.3 139 147-289 6-144 (164)
2 3l1p_A POU domain, class 5, tr 100.0 2.1E-48 7.1E-53 330.9 6.1 135 150-289 6-141 (155)
3 1au7_A Protein PIT-1, GHF-1; c 100.0 1.4E-47 4.8E-52 323.4 10.3 132 152-289 1-132 (146)
4 3d1n_I POU domain, class 6, tr 100.0 3E-46 1E-50 315.3 6.4 138 151-289 1-138 (151)
5 1e3o_C Octamer-binding transcr 100.0 8.7E-45 3E-49 309.7 10.9 142 148-289 1-146 (160)
6 1ic8_A Hepatocyte nuclear fact 99.6 2.1E-16 7.3E-21 139.8 5.0 120 155-282 27-153 (194)
7 2h8r_A Hepatocyte nuclear fact 99.3 4.2E-12 1.4E-16 114.8 7.6 118 157-282 30-180 (221)
8 2vi6_A Homeobox protein nanog; 99.1 3.4E-11 1.2E-15 86.9 3.1 47 242-288 1-47 (62)
9 2h1k_A IPF-1, pancreatic and d 99.0 9.5E-11 3.3E-15 85.0 3.5 47 242-288 1-47 (63)
10 2d5v_A Hepatocyte nuclear fact 99.0 8.9E-11 3E-15 99.4 3.7 131 150-288 3-141 (164)
11 2hdd_A Protein (engrailed home 99.0 1E-10 3.4E-15 84.2 3.2 47 243-289 2-48 (61)
12 1bw5_A ISL-1HD, insulin gene e 99.0 1.3E-10 4.4E-15 84.8 3.7 46 243-288 2-47 (66)
13 2cra_A Homeobox protein HOX-B1 99.0 1.4E-10 4.8E-15 85.6 4.0 48 242-289 5-52 (70)
14 2da2_A Alpha-fetoprotein enhan 99.0 1.6E-10 5.5E-15 85.0 4.1 48 242-289 5-52 (70)
15 1yz8_P Pituitary homeobox 2; D 99.0 5.7E-11 1.9E-15 87.3 1.3 48 242-289 1-48 (68)
16 1ig7_A Homeotic protein MSX-1; 99.0 1.8E-10 6.2E-15 81.8 3.9 44 245-288 1-44 (58)
17 2dmu_A Homeobox protein goosec 99.0 1.7E-10 5.8E-15 85.1 3.8 48 242-289 5-52 (70)
18 1akh_A Protein (mating-type pr 99.0 1.2E-10 4.2E-15 83.4 2.9 48 242-289 3-50 (61)
19 2djn_A Homeobox protein DLX-5; 99.0 2.4E-10 8.1E-15 84.4 4.0 48 242-289 5-52 (70)
20 1puf_A HOX-1.7, homeobox prote 99.0 2.7E-10 9.4E-15 85.7 4.3 48 242-289 11-58 (77)
21 2da1_A Alpha-fetoprotein enhan 99.0 1.6E-10 5.4E-15 85.1 2.9 48 242-289 5-52 (70)
22 3rkq_A Homeobox protein NKX-2. 99.0 2.6E-10 8.9E-15 80.3 3.7 46 244-289 2-47 (58)
23 2da3_A Alpha-fetoprotein enhan 99.0 2.3E-10 8E-15 85.9 3.4 48 242-289 15-62 (80)
24 1b8i_A Ultrabithorax, protein 99.0 3E-10 1E-14 86.5 4.0 49 241-289 17-65 (81)
25 1wh5_A ZF-HD homeobox family p 99.0 3.5E-10 1.2E-14 86.5 4.1 48 242-289 15-66 (80)
26 2dms_A Homeobox protein OTX2; 99.0 3.5E-10 1.2E-14 85.5 4.0 48 242-289 5-52 (80)
27 1jgg_A Segmentation protein EV 99.0 3E-10 1E-14 81.4 3.5 44 245-288 2-45 (60)
28 2cue_A Paired box protein PAX6 99.0 3.6E-10 1.2E-14 85.6 4.0 48 242-289 5-52 (80)
29 2dmq_A LIM/homeobox protein LH 99.0 3.7E-10 1.3E-14 85.1 4.1 48 242-289 5-52 (80)
30 2l7z_A Homeobox protein HOX-A1 99.0 3.9E-10 1.3E-14 84.2 4.2 48 242-289 5-52 (73)
31 2dmt_A Homeobox protein BARH-l 99.0 3.3E-10 1.1E-14 85.8 3.8 48 242-289 15-62 (80)
32 2kt0_A Nanog, homeobox protein 99.0 3.8E-10 1.3E-14 85.7 4.0 48 242-289 20-67 (84)
33 1ftt_A TTF-1 HD, thyroid trans 99.0 3.4E-10 1.2E-14 83.3 3.5 45 244-288 2-46 (68)
34 1zq3_P PRD-4, homeotic bicoid 98.9 4.1E-10 1.4E-14 82.9 3.7 45 244-288 2-46 (68)
35 2k40_A Homeobox expressed in E 98.9 4.5E-10 1.5E-14 82.2 3.8 45 244-288 1-45 (67)
36 2m0c_A Homeobox protein arista 98.9 5.6E-10 1.9E-14 82.7 4.0 48 242-289 7-54 (75)
37 1nk2_P Homeobox protein VND; h 98.9 5.7E-10 2E-14 83.9 4.0 48 242-289 7-54 (77)
38 2e1o_A Homeobox protein PRH; D 98.9 6.6E-10 2.3E-14 82.0 4.0 47 243-289 6-52 (70)
39 1ahd_P Antennapedia protein mu 98.9 3.6E-10 1.2E-14 83.3 2.6 46 244-289 2-47 (68)
40 1fjl_A Paired protein; DNA-bin 98.9 7.7E-10 2.6E-14 83.8 3.8 48 242-289 16-63 (81)
41 2r5y_A Homeotic protein sex co 98.9 7.5E-10 2.6E-14 85.2 3.6 48 242-289 26-73 (88)
42 2da4_A Hypothetical protein DK 98.9 4.1E-10 1.4E-14 85.2 1.7 48 242-289 6-57 (80)
43 1wi3_A DNA-binding protein SAT 98.9 8.5E-10 2.9E-14 84.2 3.4 47 243-289 6-53 (71)
44 3a01_A Homeodomain-containing 98.9 1E-09 3.5E-14 85.7 3.9 48 242-289 15-62 (93)
45 1wh7_A ZF-HD homeobox family p 98.9 8.7E-10 3E-14 84.7 3.3 47 242-289 15-66 (80)
46 3nar_A ZHX1, zinc fingers and 98.8 1.3E-09 4.3E-14 85.4 3.5 49 241-289 22-70 (96)
47 1b72_A Protein (homeobox prote 98.8 1.3E-09 4.6E-14 85.3 3.4 48 242-289 32-79 (97)
48 1puf_B PRE-B-cell leukemia tra 98.8 3.6E-09 1.2E-13 78.5 3.7 45 244-288 1-48 (73)
49 1x2n_A Homeobox protein pknox1 98.8 5.1E-09 1.7E-13 77.7 4.4 47 242-288 5-54 (73)
50 1mnm_C Protein (MAT alpha-2 tr 98.8 4E-09 1.4E-13 81.0 3.9 47 242-288 25-74 (87)
51 1du6_A PBX1, homeobox protein 98.8 4E-09 1.4E-13 76.3 3.3 45 244-288 3-50 (64)
52 2hi3_A Homeodomain-only protei 98.7 5.1E-09 1.8E-13 77.9 3.7 45 245-289 3-48 (73)
53 1uhs_A HOP, homeodomain only p 98.7 6.2E-09 2.1E-13 77.2 3.6 45 245-289 2-47 (72)
54 3a02_A Homeobox protein arista 98.7 5.1E-09 1.8E-13 75.0 2.9 42 247-288 2-43 (60)
55 2ly9_A Zinc fingers and homeob 98.7 7.2E-09 2.4E-13 76.9 3.8 46 243-288 5-50 (74)
56 1b72_B Protein (PBX1); homeodo 98.7 6.1E-09 2.1E-13 79.5 3.5 44 245-288 2-48 (87)
57 2cuf_A FLJ21616 protein; homeo 98.7 8.8E-09 3E-13 80.3 3.7 47 242-288 5-66 (95)
58 2ecc_A Homeobox and leucine zi 98.7 1.4E-08 5E-13 78.0 4.6 43 246-288 5-47 (76)
59 2dmn_A Homeobox protein TGIF2L 98.7 1.5E-08 5.2E-13 77.6 4.5 46 243-288 6-54 (83)
60 2dn0_A Zinc fingers and homeob 98.7 1E-08 3.5E-13 76.9 3.1 47 243-289 7-53 (76)
61 2da6_A Hepatocyte nuclear fact 98.6 1.9E-08 6.4E-13 81.3 4.5 40 242-281 4-43 (102)
62 1k61_A Mating-type protein alp 98.6 1.8E-08 6.2E-13 71.9 3.4 42 247-288 1-45 (60)
63 3a03_A T-cell leukemia homeobo 98.6 1.6E-08 5.6E-13 71.7 2.9 41 249-289 2-42 (56)
64 1le8_B Mating-type protein alp 98.6 2.7E-08 9.4E-13 75.9 3.4 45 244-288 2-49 (83)
65 2da5_A Zinc fingers and homeob 98.6 3.1E-08 1.1E-12 74.3 3.6 44 246-289 9-52 (75)
66 1lfb_A Liver transcription fac 98.6 3.2E-08 1.1E-12 79.0 3.7 39 242-280 7-45 (99)
67 2da7_A Zinc finger homeobox pr 98.5 2.5E-08 8.5E-13 76.2 2.6 36 254-289 15-50 (71)
68 2e19_A Transcription factor 8; 98.3 4E-07 1.4E-11 66.9 3.7 43 247-289 6-48 (64)
69 2cqx_A LAG1 longevity assuranc 98.3 1.2E-07 4.2E-12 71.0 0.8 43 247-289 11-54 (72)
70 3nau_A Zinc fingers and homeob 98.2 5.3E-07 1.8E-11 67.9 3.0 37 252-288 12-48 (66)
71 2ecb_A Zinc fingers and homeob 98.2 7.4E-07 2.5E-11 70.0 3.7 40 250-289 17-56 (89)
72 2dmp_A Zinc fingers and homeob 98.2 7.4E-07 2.5E-11 69.1 3.5 39 251-289 20-58 (89)
73 2l9r_A Homeobox protein NKX-3. 98.1 2.1E-06 7.1E-11 64.3 3.2 40 250-289 10-49 (69)
74 3k2a_A Homeobox protein MEIS2; 97.9 8.2E-06 2.8E-10 60.1 3.6 39 250-288 4-45 (67)
75 1x2m_A LAG1 longevity assuranc 97.8 7.3E-06 2.5E-10 61.0 2.4 35 255-289 11-46 (64)
76 1mh3_A Maltose binding-A1 home 97.6 1.4E-05 4.8E-10 73.1 1.1 46 244-289 365-410 (421)
77 2lk2_A Homeobox protein TGIF1; 97.1 0.00026 8.7E-09 55.9 3.0 39 250-288 11-52 (89)
78 3eus_A DNA-binding protein; st 96.8 0.0016 5.3E-08 48.5 4.8 51 154-210 10-62 (86)
79 3g5g_A Regulatory protein; tra 96.8 0.0015 5.1E-08 50.4 4.7 56 154-215 24-81 (99)
80 1y7y_A C.AHDI; helix-turn-heli 96.6 0.0023 7.9E-08 44.8 4.6 53 152-210 7-61 (74)
81 2ef8_A C.ECOT38IS, putative tr 96.6 0.0045 1.5E-07 44.5 6.2 51 154-210 6-58 (84)
82 4ghj_A Probable transcriptiona 96.5 0.0032 1.1E-07 49.6 5.0 53 151-209 29-81 (101)
83 2ewt_A BLDD, putative DNA-bind 96.5 0.0056 1.9E-07 42.7 5.8 55 154-212 4-60 (71)
84 3f6w_A XRE-family like protein 96.4 0.0047 1.6E-07 44.6 5.2 62 154-221 10-76 (83)
85 3s8q_A R-M controller protein; 96.4 0.0041 1.4E-07 44.9 4.7 55 154-214 7-63 (82)
86 2wiu_B HTH-type transcriptiona 96.3 0.0041 1.4E-07 45.2 4.6 53 156-214 10-64 (88)
87 3kz3_A Repressor protein CI; f 96.3 0.0048 1.6E-07 44.7 4.7 52 153-210 7-60 (80)
88 2b5a_A C.BCLI; helix-turn-heli 96.1 0.0084 2.9E-07 42.3 4.9 54 155-214 7-62 (77)
89 2kpj_A SOS-response transcript 96.1 0.014 4.7E-07 43.6 6.3 64 154-223 5-73 (94)
90 1adr_A P22 C2 repressor; trans 96.0 0.0088 3E-07 42.0 4.8 60 157-222 4-68 (76)
91 3qq6_A HTH-type transcriptiona 95.8 0.01 3.5E-07 43.3 4.4 52 158-215 10-64 (78)
92 3b7h_A Prophage LP1 protein 11 95.8 0.013 4.5E-07 41.4 4.8 53 157-215 6-61 (78)
93 1lmb_3 Protein (lambda repress 95.7 0.013 4.4E-07 43.1 4.8 56 153-214 12-69 (92)
94 1zug_A Phage 434 CRO protein; 95.6 0.0067 2.3E-07 42.0 2.8 38 158-201 3-40 (71)
95 2r1j_L Repressor protein C2; p 95.5 0.018 6E-07 39.4 4.6 50 157-212 4-55 (68)
96 3vk0_A NHTF, transcriptional r 95.5 0.023 7.8E-07 44.1 5.8 55 155-215 18-74 (114)
97 1x57_A Endothelial differentia 95.5 0.016 5.6E-07 42.7 4.7 47 158-210 13-61 (91)
98 2o38_A Hypothetical protein; a 95.4 0.014 4.6E-07 46.9 4.3 54 155-214 37-93 (120)
99 1r69_A Repressor protein CI; g 95.4 0.0091 3.1E-07 41.1 2.8 37 159-201 2-38 (69)
100 3fmy_A HTH-type transcriptiona 95.2 0.0099 3.4E-07 42.9 2.7 35 160-200 13-47 (73)
101 2k9q_A Uncharacterized protein 95.2 0.014 4.8E-07 41.8 3.4 58 159-222 3-65 (77)
102 2a6c_A Helix-turn-helix motif; 95.2 0.038 1.3E-06 40.5 5.8 52 153-210 13-67 (83)
103 3op9_A PLI0006 protein; struct 95.2 0.019 6.6E-07 44.1 4.3 58 157-220 8-70 (114)
104 2wus_R RODZ, putative uncharac 95.1 0.014 4.8E-07 46.5 3.5 43 154-202 3-45 (112)
105 2ppx_A AGR_C_3184P, uncharacte 95.1 0.01 3.5E-07 45.0 2.4 59 158-222 30-92 (99)
106 3ivp_A Putative transposon-rel 95.0 0.02 7E-07 44.8 3.9 54 156-215 10-65 (126)
107 2l49_A C protein; P2 bacteriop 94.8 0.016 5.3E-07 43.2 2.8 48 159-212 5-54 (99)
108 4ich_A Transcriptional regulat 94.8 0.0056 1.9E-07 54.2 0.4 124 154-286 26-155 (311)
109 3f52_A CLP gene regulator (CLG 94.6 0.039 1.4E-06 42.5 4.7 62 156-223 26-93 (117)
110 1b0n_A Protein (SINR protein); 94.1 0.041 1.4E-06 41.4 3.8 56 159-220 2-63 (111)
111 2xi8_A Putative transcription 94.0 0.012 4.2E-07 40.0 0.5 48 161-214 4-53 (66)
112 3o9x_A Uncharacterized HTH-typ 94.0 0.028 9.7E-07 44.5 2.7 33 162-200 75-107 (133)
113 1y9q_A Transcriptional regulat 93.9 0.069 2.4E-06 44.4 5.0 56 154-215 7-64 (192)
114 2jvl_A TRMBF1; coactivator, he 93.9 0.058 2E-06 41.8 4.3 38 157-200 33-72 (107)
115 3cec_A Putative antidote prote 93.6 0.073 2.5E-06 40.2 4.3 51 158-214 18-70 (104)
116 3lfp_A CSP231I C protein; tran 93.5 0.057 1.9E-06 40.5 3.5 50 159-214 2-57 (98)
117 3mlf_A Transcriptional regulat 93.5 0.0079 2.7E-07 47.1 -1.3 52 157-214 22-75 (111)
118 2bnm_A Epoxidase; oxidoreducta 93.5 0.083 2.8E-06 43.9 4.8 56 154-215 6-64 (198)
119 3kxa_A NGO0477 protein, putati 93.5 0.029 9.8E-07 46.0 2.0 53 157-215 67-121 (141)
120 2eby_A Putative HTH-type trans 93.4 0.089 3E-06 40.2 4.5 51 158-214 10-63 (113)
121 3bs3_A Putative DNA-binding pr 93.1 0.031 1.1E-06 39.2 1.4 47 159-211 11-59 (76)
122 3u3w_A Transcriptional activat 93.0 0.089 3E-06 45.0 4.4 59 157-222 4-67 (293)
123 3t76_A VANU, transcriptional r 92.6 0.12 4E-06 39.4 4.2 47 160-212 26-73 (88)
124 3omt_A Uncharacterized protein 92.6 0.11 3.6E-06 36.6 3.6 49 160-214 10-60 (73)
125 2qfc_A PLCR protein; TPR, HTH, 92.6 0.057 1.9E-06 46.3 2.6 47 157-210 4-52 (293)
126 3fym_A Putative uncharacterize 92.5 0.038 1.3E-06 44.5 1.3 39 157-201 2-40 (130)
127 2ofy_A Putative XRE-family tra 92.4 0.15 5.1E-06 36.9 4.3 62 153-222 11-78 (86)
128 2awi_A PRGX; repressor, pherom 91.7 0.12 4E-06 47.1 3.7 50 159-215 4-55 (317)
129 3bdn_A Lambda repressor; repre 91.2 0.22 7.6E-06 42.4 4.7 51 155-211 14-66 (236)
130 3trb_A Virulence-associated pr 91.0 0.26 9E-06 38.4 4.6 50 160-215 15-67 (104)
131 2ict_A Antitoxin HIGA; helix-t 90.6 0.23 7.8E-06 36.6 3.8 57 159-221 9-71 (94)
132 1jhg_A Trp operon repressor; c 90.4 0.45 1.6E-05 38.0 5.5 59 151-221 36-96 (101)
133 3bd1_A CRO protein; transcript 88.9 0.15 5E-06 36.7 1.5 42 162-210 3-45 (79)
134 2p5t_A Putative transcriptiona 87.6 0.11 3.6E-06 42.6 0.0 36 159-200 2-37 (158)
135 3r1f_A ESX-1 secretion-associa 84.8 1.2 4.1E-05 36.3 4.9 57 158-215 7-72 (135)
136 3pxp_A Helix-turn-helix domain 83.6 0.65 2.2E-05 42.9 3.2 53 157-215 5-66 (292)
137 2auw_A Hypothetical protein NE 83.2 0.57 1.9E-05 40.5 2.5 45 151-201 74-127 (170)
138 3qwg_A ESX-1 secretion-associa 82.8 1.3 4.5E-05 35.6 4.3 56 158-214 5-69 (123)
139 2rgt_A Fusion of LIM/homeobox 74.2 0.076 2.6E-06 44.2 -5.7 28 243-270 135-162 (169)
140 2l1p_A DNA-binding protein SAT 68.6 4.2 0.00014 31.8 3.4 51 165-223 26-78 (83)
141 2fjr_A Repressor protein CI; g 63.4 4.5 0.00015 33.1 2.9 58 157-222 8-69 (189)
142 1rzs_A Antirepressor, regulato 63.0 4 0.00014 28.5 2.2 25 168-198 7-31 (61)
143 1iuf_A Centromere ABP1 protein 62.3 13 0.00044 30.0 5.5 85 168-281 27-114 (144)
144 1nr3_A MTH0916, DNA-binding pr 57.5 2 6.9E-05 33.8 -0.2 25 170-200 4-28 (122)
145 1jhf_A LEXA repressor; LEXA SO 57.3 7.9 0.00027 32.2 3.5 37 157-199 9-48 (202)
146 2pij_A Prophage PFL 6 CRO; tra 57.1 5.5 0.00019 27.1 2.1 29 163-198 6-34 (67)
147 1xwr_A Regulatory protein CII; 56.7 5.4 0.00018 31.5 2.2 36 171-214 23-58 (97)
148 1neq_A DNA-binding protein NER 52.9 8 0.00027 28.2 2.4 30 164-199 15-44 (74)
149 1zs4_A Regulatory protein CII; 50.1 9.5 0.00033 29.5 2.6 40 166-214 20-59 (83)
150 4e1p_A Protein LSR2; anti-para 49.9 9.1 0.00031 28.1 2.3 24 200-223 34-57 (61)
151 4e1r_A Protein LSR2; anti-para 40.5 15 0.00051 28.8 2.3 24 200-223 59-82 (86)
152 1iuf_A Centromere ABP1 protein 39.7 40 0.0014 27.0 4.9 42 245-286 6-51 (144)
153 4fqn_A Malcavernin; helical do 36.6 27 0.00094 27.9 3.3 37 150-188 28-64 (98)
154 2ys9_A Homeobox and leucine zi 36.3 13 0.00045 28.1 1.3 38 252-289 14-51 (70)
155 2glo_A Brinker CG9653-PA; prot 33.0 13 0.00045 25.3 0.8 40 248-288 3-42 (59)
156 1b4a_A Arginine repressor; hel 32.4 18 0.0006 30.3 1.7 27 172-199 20-46 (149)
157 3v4g_A Arginine repressor; vib 30.6 32 0.0011 29.9 3.0 37 156-196 35-72 (180)
158 3frw_A Putative Trp repressor 25.4 52 0.0018 26.5 3.2 40 151-196 37-77 (107)
159 1uxc_A FRUR (1-57), fructose r 24.4 65 0.0022 22.9 3.3 21 173-199 2-22 (65)
160 2elh_A CG11849-PA, LD40883P; s 24.2 43 0.0015 24.4 2.4 40 244-288 16-55 (87)
161 3me5_A Cytosine-specific methy 24.1 32 0.0011 33.7 2.1 33 169-201 27-59 (482)
162 1k78_A Paired box protein PAX5 22.8 2E+02 0.0068 22.2 6.2 29 248-276 88-116 (149)
163 3fx7_A Putative uncharacterize 22.5 53 0.0018 25.9 2.7 22 150-171 5-26 (94)
164 3lap_A Arginine repressor; arg 22.4 33 0.0011 29.4 1.6 23 173-196 36-58 (170)
165 1r71_A Transcriptional repress 21.5 73 0.0025 27.1 3.6 25 170-200 51-75 (178)
166 1vz0_A PARB, chromosome partit 20.7 1.4E+02 0.0049 25.9 5.5 39 169-220 132-170 (230)
167 1pdn_C Protein (PRD paired); p 20.2 1.9E+02 0.0066 20.9 5.4 34 250-283 75-108 (128)
No 1
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=100.00 E-value=3e-48 Score=333.66 Aligned_cols=139 Identities=61% Similarity=0.950 Sum_probs=111.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhcccchHHHHhhhHHHHHHHHHhhcCCC
Q psy6088 147 PDETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLSDADSTTA 226 (289)
Q Consensus 147 ~ee~~dl~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLqLSfKNmcKLkPLLekWLeEAE~~~~ 226 (289)
.++.++++|||+||+.||+|||+|||||+|||+|||.+||++||||||||||+|+|||||||||+|+|++||+|+|....
T Consensus 6 ~~~~~~~~~l~~fa~~fk~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l~ls~kn~~klkPlL~~wl~eae~~~~ 85 (164)
T 2xsd_C 6 DEDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSSSG 85 (164)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHHCC---
T ss_pred cccccchhHHHHHHHHHHHHHhhcCCcccccccccccccCCCcCcchhhhhhccCCCHHHHHHcchhHHHHHhhhccccC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999997643
Q ss_pred CCCCCCCCCCChhhhcccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 227 NPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 227 n~~~l~~~l~~~e~~~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.+..+ .......++||+||+|+..|+..||++|..|+||+..+|.+||..|||++++|+
T Consensus 86 ~~~~~----~~~~~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 144 (164)
T 2xsd_C 86 SPTNL----DKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVR 144 (164)
T ss_dssp ------------------------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCccc----ccccccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhh
Confidence 32221 111234588889999999999999999999999999999999999999998874
No 2
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=100.00 E-value=2.1e-48 Score=330.94 Aligned_cols=135 Identities=51% Similarity=0.809 Sum_probs=118.7
Q ss_pred CCCHHHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhcccchHHHHhhhHHHHHHHHHhhcCCCCCC
Q psy6088 150 TTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLSDADSTTANPS 229 (289)
Q Consensus 150 ~~dl~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLqLSfKNmcKLkPLLekWLeEAE~~~~n~~ 229 (289)
..+.+|||+||+.||+|||+|||||+|||.|||.+||++||||||||||+|+|||||||||||+|++||+|+|+..+ ..
T Consensus 6 ~~~~~~l~~fa~~fk~~ri~lg~tq~~vg~al~~l~G~~~Sqtti~rfE~l~ls~~nm~kLkPlL~~Wl~eae~~~~-~~ 84 (155)
T 3l1p_A 6 KALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQLSLKNMSKLRPLLEKWVEEADNNEN-LQ 84 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTTCHH-HH
T ss_pred hhhHHHHHHHHHHHHhhhheecccHHHHHHHHHhhcCcccccccccccccccCChhhHhhcchHHHHHhhhhhcccC-cc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999995421 11
Q ss_pred CCCCCCCChhhh-cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 230 CLSNPLTTPEAI-GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 230 ~l~~~l~~~e~~-~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
... ..+.. +++||+||.|+..++..||++|..|+||+..+|.+||..|||++++|+
T Consensus 85 ~~~----~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~ 141 (155)
T 3l1p_A 85 EIS----KSETLVQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVR 141 (155)
T ss_dssp HSS----CC---CCCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred ccc----cccccccCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhhee
Confidence 111 11222 478889999999999999999999999999999999999999998874
No 3
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=100.00 E-value=1.4e-47 Score=323.41 Aligned_cols=132 Identities=47% Similarity=0.731 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhcccchHHHHhhhHHHHHHHHHhhcCCCCCCCC
Q psy6088 152 DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLSDADSTTANPSCL 231 (289)
Q Consensus 152 dl~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLqLSfKNmcKLkPLLekWLeEAE~~~~n~~~l 231 (289)
+++|||+||+.||+|||+|||||+|||.|||.+||++||||||||||+|||||||||||||+|++||+|+|......
T Consensus 1 ~~~~l~~fa~~~k~~ri~lg~tQ~~vg~al~~l~g~~~Sqtti~rfe~l~ls~knm~kLkPlL~~wl~e~e~~~~~~--- 77 (146)
T 1au7_A 1 GMRALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVGALY--- 77 (146)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHCCC--------
T ss_pred CccHHHHHHHHHHHHHHhccCcHHhhhhhcchhccCCCCcchHHHHhccCCChHHHHhcchHHHHHHHHhhcccCcc---
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999753221
Q ss_pred CCCCCChhhhcccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 232 SNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 232 ~~~l~~~e~~~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
... .....++||+||+|+..|+..||++|..|+||+..+|.+||..|||++++|+
T Consensus 78 ~~~---~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 132 (146)
T 1au7_A 78 NEK---VGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 132 (146)
T ss_dssp --------------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred Ccc---cCCCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhch
Confidence 111 1123477889999999999999999999999999999999999999998874
No 4
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=100.00 E-value=3e-46 Score=315.30 Aligned_cols=138 Identities=38% Similarity=0.573 Sum_probs=119.0
Q ss_pred CCHHHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhcccchHHHHhhhHHHHHHHHHhhcCCCCCCC
Q psy6088 151 TDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLSDADSTTANPSC 230 (289)
Q Consensus 151 ~dl~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLqLSfKNmcKLkPLLekWLeEAE~~~~n~~~ 230 (289)
+|++|||+||+.||+|||+|||||+|||.|||.+||++|||+||||||+|+|||||||||||+|++||+|+|.....+..
T Consensus 1 ~~~~~~~~fa~~f~~~ri~lg~tQ~~vg~al~~l~g~~~Sqsti~rfe~l~ls~kn~~klkPll~~Wl~e~e~~~~~~~~ 80 (151)
T 3d1n_I 1 INMEEIREFAKNFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQ 80 (151)
T ss_dssp -CHHHHHHHHHHHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHCST
T ss_pred CCHHHHHHHHHHHHHHHhhcCCCcccHHHhhccccCCCCCccccccccCCCCChhHHHHhchhHHHHHHHHHhccccCcc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999964221111
Q ss_pred CCCCCCChhhhcccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 231 LSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 231 l~~~l~~~e~~~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
....... ...+++||+||.|+..|+..||++|..|+||+..++.+||..|||++++|+
T Consensus 81 ~~~~~~~-~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 138 (151)
T 3d1n_I 81 NLMEFVG-GEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVR 138 (151)
T ss_dssp THHHHHC-SSCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred cccccCC-CCCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhH
Confidence 0000000 112478889999999999999999999999999999999999999998874
No 5
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=100.00 E-value=8.7e-45 Score=309.71 Aligned_cols=142 Identities=71% Similarity=1.053 Sum_probs=115.6
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhcccchHHHHhhhHHHHHHHHHhhcCCCC
Q psy6088 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLSDADSTTAN 227 (289)
Q Consensus 148 ee~~dl~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLqLSfKNmcKLkPLLekWLeEAE~~~~n 227 (289)
||++|++|||+||+.||.+||+|||||+|||.++|.+||++|||+||||||+|+|||||||||||+|++||+|+|.....
T Consensus 1 ~~~~~~~~~~~~~~~~k~~r~~lg~tQ~~vg~~lg~l~g~~~sq~ti~rfE~l~lS~knm~klkPlL~~WL~e~e~~~~~ 80 (160)
T 1e3o_C 1 EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDAEANLSS 80 (160)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHhhccccCCCcCccccccccccCCChHHHHhcchhHHHHHHhhhccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999965321
Q ss_pred CCCCCC--CCC--ChhhhcccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 228 PSCLSN--PLT--TPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 228 ~~~l~~--~l~--~~e~~~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
...... ... ..+...++||+||+|+..|+..||++|..|+||+..+|.+||..|||++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 146 (160)
T 1e3o_C 81 DSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIR 146 (160)
T ss_dssp -----------------------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCcCCCCCCCCCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhh
Confidence 111100 011 11233588999999999999999999999999999999999999999998874
No 6
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.62 E-value=2.1e-16 Score=139.79 Aligned_cols=120 Identities=17% Similarity=0.208 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhcccchHHHHhhhHHHHHHHHHhhcCC-------CC
Q psy6088 155 ELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLSDADSTT-------AN 227 (289)
Q Consensus 155 ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLqLSfKNmcKLkPLLekWLeEAE~~~-------~n 227 (289)
+...|++.+|..++..|+||.+|+..+| +||++||||++....+++++ ++.|..|+....+.. .+
T Consensus 27 ~p~~l~~~Ik~~l~~~gitQ~~lA~~~G------iSqs~ISr~l~~~~~~~~~k--raaly~W~~~~~~~i~~~~~~~~~ 98 (194)
T 1ic8_A 27 DPWRVAKMVKSYLQQHNIPQREVVDTTG------LNQSHLSQHLNKGTPMKTQK--RAALYTWYVRKQREVAQQFTHAGQ 98 (194)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHC------CCHHHHHHHHHSBCCCCHHH--HHHHHHHHHHHTTTTHHHHCCC--
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHhC------CChHHHHHHHhcCccccccc--cccchhhHHHhhhhhhccccCCCC
Confidence 4557899999999999999999999984 89999999999888777765 578899998775421 00
Q ss_pred CCCCCCCCCChhhhcccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcC
Q psy6088 228 PSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLC 282 (289)
Q Consensus 228 ~~~l~~~l~~~e~~~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~ 282 (289)
+....+.........++||.||.|+..++..||++|..++||+..+|++||..+|
T Consensus 99 ~~~~~~~~~~~~~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~ 153 (194)
T 1ic8_A 99 GGLIEEPTGDELPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECN 153 (194)
T ss_dssp ------------------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHH
T ss_pred CCCCCCCcccccccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC
Confidence 0010000000011236788999999999999999999999999999999999999
No 7
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.29 E-value=4.2e-12 Score=114.77 Aligned_cols=118 Identities=18% Similarity=0.166 Sum_probs=82.7
Q ss_pred HHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhcccchHHHHhhhHHHHHHHHHhhc----CC-----CC
Q psy6088 157 EQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLSDADS----TT-----AN 227 (289)
Q Consensus 157 E~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLqLSfKNmcKLkPLLekWLeEAE~----~~-----~n 227 (289)
..|++..|..|+..|+||.+|+..+ ..||++|||||+.. +....-| +.-+-.|+....+ .. .+
T Consensus 30 ~~~~~~Ik~~r~~~gltQ~evA~~t------GISqS~ISq~e~~g-~~~t~~k-~a~~y~Wy~~~~~e~~~~~~~~~~~~ 101 (221)
T 2h8r_A 30 WRAAKMIKGYMQQHNIPQREVVDVT------GLNQSHLSQHLNKG-TPMKTQK-RAALYTWYVRKQREILRQFNQTVQSS 101 (221)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHH------TCCHHHHHHHHTTC-CCCCHHH-HHHHHHHHHHHHHHHHHTTTTCC---
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHh------CCCHHHHHHHHhCC-CchhHHH-HHHHHHHHHHHhhhhhhccccccccc
Confidence 4788999999999999999999887 47899999999843 3233333 3666778775311 10 00
Q ss_pred --CCCCC-------------C----CC----CChhh-hcccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcC
Q psy6088 228 --PSCLS-------------N----PL----TTPEA-IGRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLC 282 (289)
Q Consensus 228 --~~~l~-------------~----~l----~~~e~-~~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~ 282 (289)
..+.. . +. +..+. ..++||.||.|+..++..||++|..++||+..++++||+.+|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n 180 (221)
T 2h8r_A 102 GNMTDKSSQDQLLFLFPEFSQQSHGPGQSDDACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECN 180 (221)
T ss_dssp ----------------------------------------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred ccccccccccchhhhhhhhhccccCCCCCcccccccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHC
Confidence 00000 0 00 00011 236788999999999999999999999999999999999988
No 8
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.10 E-value=3.4e-11 Score=86.95 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=39.1
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCcccc
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVV 288 (289)
|++||+||.|+..++..||++|..|+||+..++.+||..|||++.+|
T Consensus 1 g~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV 47 (62)
T 2vi6_A 1 GTKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQV 47 (62)
T ss_dssp -------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHh
Confidence 46788999999999999999999999999999999999999999876
No 9
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.04 E-value=9.5e-11 Score=84.96 Aligned_cols=47 Identities=26% Similarity=0.241 Sum_probs=41.9
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCcccc
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVV 288 (289)
|.+||+||.|+..|+..||++|..|+||+..++.+||..|||++.+|
T Consensus 1 g~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV 47 (63)
T 2h1k_A 1 GSNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHI 47 (63)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHh
Confidence 35678999999999999999999999999999999999999998876
No 10
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.03 E-value=8.9e-11 Score=99.42 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhcccchHHHHhhh-HH--HHHHHHHhhcC--
Q psy6088 150 TTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLK-PL--LQKWLSDADST-- 224 (289)
Q Consensus 150 ~~dl~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLqLSfKNmcKLk-PL--LekWLeEAE~~-- 224 (289)
..|..++. +..|.--..-+++|+-++... -+.||.++|.+=+---.++++.+-+ |+ +..||.+.+..
T Consensus 3 ~~dt~~i~---~~i~~~l~~~~i~q~~fa~~i-----lg~sq~~ls~~l~~pkpw~~l~~g~~~y~rm~~WL~~pe~~r~ 74 (164)
T 2d5v_A 3 EINTKEVA---QRITTELKRYSIPQAIFAQRV-----LCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRM 74 (164)
T ss_dssp CCCHHHHH---HHHHHHHHHTTCCHHHHHHHH-----TSCCHHHHHHHHHSCCCGGGCSTTHHHHHHHHHHHHSCHHHHH
T ss_pred ccCHHHHH---HHHHHHHHHcCCchHHHHHHH-----hcCCchhHHHHcCCCCCHHHHcccchHHHHHHHHHhccchhhh
Confidence 34555554 333333333455666665422 1247777776544332333322111 22 56799766422
Q ss_pred --CC-CCCCCCCCCCChhhhcccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCcccc
Q psy6088 225 --TA-NPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 225 --~~-n~~~l~~~l~~~e~~~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVV 288 (289)
.. ................++||+||.|+..|+..||++|..++||+..++.+||..|||++.+|
T Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV 141 (164)
T 2d5v_A 75 SALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTV 141 (164)
T ss_dssp HHTTC--------------------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred hhhhcccccccccccCCcCCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHh
Confidence 00 00000000000111236788999999999999999999999999999999999999999876
No 11
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.03 E-value=1e-10 Score=84.21 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=40.5
Q ss_pred ccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 243 RRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 243 RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.+||+||.|+..|+..||.+|..|+||+..++.+||..|||++.+|+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIK 48 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 35789999999999999999999999999999999999999998773
No 12
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.03 E-value=1.3e-10 Score=84.83 Aligned_cols=46 Identities=15% Similarity=0.254 Sum_probs=43.8
Q ss_pred ccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCcccc
Q psy6088 243 RRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 243 RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVV 288 (289)
++||+||.|+..|+..||.+|..|+||+..++.+||..+||++.+|
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 47 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVI 47 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHH
Confidence 4688999999999999999999999999999999999999999876
No 13
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.03 E-value=1.4e-10 Score=85.65 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=44.9
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
+++||+||.|+..|+..||.+|..|+||+..++.+||..|||++.+|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQIT 52 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhh
Confidence 467889999999999999999999999999999999999999998873
No 14
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.02 E-value=1.6e-10 Score=85.04 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=45.0
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
+++||+||.|+..|+..||.+|..|+||+..++.+||..|||++.+|+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIV 52 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhH
Confidence 467889999999999999999999999999999999999999998773
No 15
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.01 E-value=5.7e-11 Score=87.34 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=45.2
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
|++||+||.|+..|+..||.+|..|+||+..++.+||..|||++.+|+
T Consensus 1 g~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (68)
T 1yz8_P 1 GSQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVR 48 (68)
T ss_dssp CCSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 467899999999999999999999999999999999999999998763
No 16
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.01 E-value=1.8e-10 Score=81.78 Aligned_cols=44 Identities=27% Similarity=0.325 Sum_probs=42.3
Q ss_pred CCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCcccc
Q psy6088 245 RKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 245 RRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVV 288 (289)
||+||.|+..|+..||++|..|+||+..++.+||..+||++.+|
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 44 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQV 44 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHh
Confidence 57899999999999999999999999999999999999999876
No 17
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.7e-10 Score=85.09 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=44.8
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
+.+||+||.|+..|+..||++|..|+||+..++.+||..|||++.+|+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVE 52 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHee
Confidence 356889999999999999999999999999999999999999998873
No 18
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.00 E-value=1.2e-10 Score=83.41 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=37.5
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.++||+||.|+..++..||.+|..++||+..++.+||..+||++.+|+
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~ 50 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVR 50 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 367889999999999999999999999999999999999999998773
No 19
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=2.4e-10 Score=84.45 Aligned_cols=48 Identities=23% Similarity=0.206 Sum_probs=44.8
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
+++||+||.|+..|+..||++|..|+||+..++.+||..|||++.+|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVK 52 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 366889999999999999999999999999999999999999998773
No 20
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=98.99 E-value=2.7e-10 Score=85.66 Aligned_cols=48 Identities=27% Similarity=0.224 Sum_probs=45.0
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.++||+||.|+..|+..||.+|..++||+..++.+||..|||++.+|+
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 58 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 467889999999999999999999999999999999999999998873
No 21
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=98.99 E-value=1.6e-10 Score=85.11 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=44.9
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.++||+||.|+..|+..||++|..|+||+..++.+||..|||++.+|+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIK 52 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 367889999999999999999999999999999999999999998873
No 22
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=98.98 E-value=2.6e-10 Score=80.33 Aligned_cols=46 Identities=26% Similarity=0.261 Sum_probs=43.2
Q ss_pred cCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 244 RRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 244 kRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
+||+||.|+..++..||.+|..++||+..++.+||..|||++.+|+
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVK 47 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHH
Confidence 4678999999999999999999999999999999999999988763
No 23
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=98.97 E-value=2.3e-10 Score=85.86 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=45.3
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.++||+||.|+..|+..||.+|..++||+..++.+||..|||++.+|+
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~ 62 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQ 62 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhH
Confidence 477889999999999999999999999999999999999999998873
No 24
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=98.97 E-value=3e-10 Score=86.49 Aligned_cols=49 Identities=24% Similarity=0.247 Sum_probs=40.5
Q ss_pred hcccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 241 IGRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 241 ~~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.+++||+||.|+..|+..||++|..|+||+..++.+||..|||++.+|+
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 65 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIK 65 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 3577889999999999999999999999999999999999999998873
No 25
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=98.96 E-value=3.5e-10 Score=86.53 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=45.3
Q ss_pred cccCCCCccccHHHHHHHHHHHhh----CCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQ----NPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~q----npkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.++||+||.|+..|+..||++|.. ++||+..++.+||..|||++.+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~Vk 66 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLK 66 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCccccc
Confidence 477889999999999999999999 999999999999999999998873
No 26
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.96 E-value=3.5e-10 Score=85.49 Aligned_cols=48 Identities=19% Similarity=0.150 Sum_probs=45.0
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.++||+||.|+..|+..||++|..|+||+..++.+||..|||++.+|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQ 52 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhh
Confidence 367889999999999999999999999999999999999999998873
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=98.96 E-value=3e-10 Score=81.44 Aligned_cols=44 Identities=25% Similarity=0.215 Sum_probs=41.7
Q ss_pred CCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCcccc
Q psy6088 245 RKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 245 RRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVV 288 (289)
||+||.|+..|+..||++|..|+||+..++.+||..|||++.+|
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 45 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTI 45 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHH
Confidence 67899999999999999999999999999999999999999876
No 28
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.96 E-value=3.6e-10 Score=85.60 Aligned_cols=48 Identities=23% Similarity=0.205 Sum_probs=44.8
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
+++||+||.|+..|+..||++|..|+||+..++.+||..|||++.+|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQ 52 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhh
Confidence 367889999999999999999999999999999999999999998873
No 29
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=3.7e-10 Score=85.09 Aligned_cols=48 Identities=17% Similarity=0.283 Sum_probs=44.8
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.++||+||.|+..|+..||++|..++||+..++.+||..|||++.+|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 52 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhh
Confidence 366889999999999999999999999999999999999999998873
No 30
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=98.96 E-value=3.9e-10 Score=84.16 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=45.1
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.++||+||.|+..|+..||++|..|+||+..++.+||..|||++.+|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVT 52 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHH
Confidence 467889999999999999999999999999999999999999998873
No 31
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=3.3e-10 Score=85.78 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=45.1
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.++||+||.|+..|+..||++|..|+||+..++.+||..|||++.+|+
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 62 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVK 62 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHee
Confidence 467889999999999999999999999999999999999999998873
No 32
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=98.95 E-value=3.8e-10 Score=85.74 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=45.4
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.++||+||.|+..|+..||++|..++||+..++.+||..|||++.+|+
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 67 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVK 67 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 578889999999999999999999999999999999999999998873
No 33
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=98.95 E-value=3.4e-10 Score=83.32 Aligned_cols=45 Identities=24% Similarity=0.275 Sum_probs=43.1
Q ss_pred cCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCcccc
Q psy6088 244 RRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 244 kRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVV 288 (289)
+||+||.|+..++..||.+|..|+||+..++.+||..|||++.+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV 46 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQV 46 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHh
Confidence 578999999999999999999999999999999999999999876
No 34
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=98.94 E-value=4.1e-10 Score=82.89 Aligned_cols=45 Identities=27% Similarity=0.371 Sum_probs=43.0
Q ss_pred cCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCcccc
Q psy6088 244 RRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 244 kRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVV 288 (289)
+||+||.|+..|+..||++|..++||+..++..||..|||++.+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 46 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQV 46 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHh
Confidence 577999999999999999999999999999999999999998876
No 35
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=98.94 E-value=4.5e-10 Score=82.16 Aligned_cols=45 Identities=24% Similarity=0.297 Sum_probs=42.8
Q ss_pred cCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCcccc
Q psy6088 244 RRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 244 kRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVV 288 (289)
.||+||.|+..|+..||++|..|+||+..++.+||..|||++.+|
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 45 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRI 45 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHh
Confidence 367899999999999999999999999999999999999998876
No 36
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.93 E-value=5.6e-10 Score=82.67 Aligned_cols=48 Identities=23% Similarity=0.276 Sum_probs=45.2
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
+++||+||.|+..++..||.+|..++||+..++.+||..|||++.+|+
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 54 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 54 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHH
Confidence 577889999999999999999999999999999999999999988763
No 37
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=98.93 E-value=5.7e-10 Score=83.90 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=44.9
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.++||+||.|+..|+..||++|..|+||+..++.+||..|||++.+|+
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 54 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVK 54 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHH
Confidence 467889999999999999999999999999999999999999998763
No 38
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.92 E-value=6.6e-10 Score=82.04 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=44.1
Q ss_pred ccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 243 RRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 243 RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
++||+||.|+..|+..||++|..|+||+..++.+||..|||++.+|+
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVK 52 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhh
Confidence 56778999999999999999999999999999999999999998763
No 39
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=98.92 E-value=3.6e-10 Score=83.30 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=43.3
Q ss_pred cCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 244 RRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 244 kRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
+||+||.|+..|+..||.+|..|+||+..++.+||..|||++.+|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 47 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhh
Confidence 4779999999999999999999999999999999999999998763
No 40
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=98.90 E-value=7.7e-10 Score=83.80 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=44.6
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.++||+||.|+..|+..||++|..++||+..++.+||..|||++.+|+
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 63 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 63 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHH
Confidence 467889999999999999999999999999999999999999998763
No 41
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=98.89 E-value=7.5e-10 Score=85.19 Aligned_cols=48 Identities=25% Similarity=0.265 Sum_probs=41.5
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
+++||+||.|+..|+..||++|..|+||+..++.+||..|||++.+|+
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 73 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 73 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhh
Confidence 467889999999999999999999999999999999999999998873
No 42
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=4.1e-10 Score=85.15 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=45.2
Q ss_pred cccCCCCccccHHHHHHHHHHHhhC----CCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQN----PKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qn----pkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.++||+||.|+..|+..||++|..+ +||+..++.+||.+|||++.+|+
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~ 57 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVR 57 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhh
Confidence 4678899999999999999999999 99999999999999999998873
No 43
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.88 E-value=8.5e-10 Score=84.25 Aligned_cols=47 Identities=19% Similarity=0.150 Sum_probs=44.8
Q ss_pred ccCCCCccccHHHHHHHHHHHhh-CCCCCHHHHHHHHhhcCCCccccC
Q psy6088 243 RRRKKRTSIETSVRVALEKAFLQ-NPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 243 RkRRkRTsfs~~Qk~~LEk~F~q-npkPS~~Ei~~LA~~L~LekeVVR 289 (289)
++||.||+|+.+|+..|+.+|.. ++||+.++|..||.+|||+++||+
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~Iq 53 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTII 53 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 66889999999999999999999 999999999999999999999874
No 44
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=98.87 E-value=1e-09 Score=85.73 Aligned_cols=48 Identities=31% Similarity=0.301 Sum_probs=45.1
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.++||+||.|+..|+..||++|..|+||+..++.+||..|||++.+|+
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 62 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVK 62 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHH
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcc
Confidence 467889999999999999999999999999999999999999998873
No 45
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=98.87 E-value=8.7e-10 Score=84.67 Aligned_cols=47 Identities=13% Similarity=0.192 Sum_probs=44.0
Q ss_pred cccCCCCccccHHHHHHHHHHHhh-----CCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQ-----NPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~q-----npkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.++||+||.|+..|+..|| .|.. ++||+..++.+||.+|||++.+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVk 66 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLK 66 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCccc
Confidence 4778899999999999999 8999 999999999999999999998873
No 46
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=98.84 E-value=1.3e-09 Score=85.41 Aligned_cols=49 Identities=18% Similarity=0.113 Sum_probs=42.1
Q ss_pred hcccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 241 IGRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 241 ~~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
..+.||+||.|+..|+..||++|..++||+..++.+||..|||++.+|+
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 70 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIV 70 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHee
Confidence 3466789999999999999999999999999999999999999988763
No 47
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=98.83 E-value=1.3e-09 Score=85.28 Aligned_cols=48 Identities=25% Similarity=0.207 Sum_probs=41.5
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
+++||+||.|+..|+..||++|..|+||+..++.+||..|||++.+|+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 79 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVK 79 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhH
Confidence 577889999999999999999999999999999999999999998873
No 48
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=98.77 E-value=3.6e-09 Score=78.48 Aligned_cols=45 Identities=29% Similarity=0.440 Sum_probs=42.5
Q ss_pred cCCCCccccHHHHHHHHHHH---hhCCCCCHHHHHHHHhhcCCCcccc
Q psy6088 244 RRKKRTSIETSVRVALEKAF---LQNPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 244 kRRkRTsfs~~Qk~~LEk~F---~qnpkPS~~Ei~~LA~~L~LekeVV 288 (289)
.||+||.|+..++..||.+| ..+|||+..++..||..+||++.+|
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV 48 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQV 48 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHH
Confidence 36789999999999999999 9999999999999999999998876
No 49
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.77 E-value=5.1e-09 Score=77.68 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=43.8
Q ss_pred cccCCCCccccHHHHHHHHHHHhh---CCCCCHHHHHHHHhhcCCCcccc
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQ---NPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~q---npkPS~~Ei~~LA~~L~LekeVV 288 (289)
+++||+||.|+..++..||++|.. +|||+..++.+||..+||++.+|
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV 54 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQV 54 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 367889999999999999999987 99999999999999999998876
No 50
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=98.76 E-value=4e-09 Score=80.97 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=44.5
Q ss_pred cccCCCCccccHHHHHHHHHHHhh---CCCCCHHHHHHHHhhcCCCcccc
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQ---NPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~q---npkPS~~Ei~~LA~~L~LekeVV 288 (289)
+++||+||.|+..++..||++|.. +|||+..++.+||..+||++.+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV 74 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQI 74 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHH
Confidence 467888999999999999999999 99999999999999999998876
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.75 E-value=4e-09 Score=76.31 Aligned_cols=45 Identities=22% Similarity=0.317 Sum_probs=42.6
Q ss_pred cCCCCccccHHHHHHHHHHH---hhCCCCCHHHHHHHHhhcCCCcccc
Q psy6088 244 RRKKRTSIETSVRVALEKAF---LQNPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 244 kRRkRTsfs~~Qk~~LEk~F---~qnpkPS~~Ei~~LA~~L~LekeVV 288 (289)
.||+||.|+..++..||.+| ..+|||+..++.+||..+||++.+|
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV 50 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQV 50 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHH
Confidence 46789999999999999999 9999999999999999999998876
No 52
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.74 E-value=5.1e-09 Score=77.94 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=42.2
Q ss_pred CCCCccccHHHHHHHHHHHhh-CCCCCHHHHHHHHhhcCCCccccC
Q psy6088 245 RKKRTSIETSVRVALEKAFLQ-NPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 245 RRkRTsfs~~Qk~~LEk~F~q-npkPS~~Ei~~LA~~L~LekeVVR 289 (289)
+|+||.|+..|+..||++|.. ++||+..++.+||..+||++.+|+
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~ 48 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 48 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 578999999999999999995 999999999999999999998773
No 53
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.72 E-value=6.2e-09 Score=77.17 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=42.0
Q ss_pred CCCCccccHHHHHHHHHHHhh-CCCCCHHHHHHHHhhcCCCccccC
Q psy6088 245 RKKRTSIETSVRVALEKAFLQ-NPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 245 RRkRTsfs~~Qk~~LEk~F~q-npkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.|+||.|+..|+..||++|.. ++||+..++.+||..|||++.+|+
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~ 47 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 47 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 468999999999999999996 999999999999999999998763
No 54
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=98.72 E-value=5.1e-09 Score=74.96 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=38.1
Q ss_pred CCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCcccc
Q psy6088 247 KRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 247 kRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVV 288 (289)
.||.|+..|+..||++|..++||+..++.+||..+||++.+|
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 43 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARI 43 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHH
Confidence 589999999999999999999999999999999999998876
No 55
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.71 E-value=7.2e-09 Score=76.93 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=43.2
Q ss_pred ccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCcccc
Q psy6088 243 RRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 243 RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVV 288 (289)
..++.||.|+..|+..||+.|..++||+..++.+||..|||++.+|
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 50 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEI 50 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHe
Confidence 3467899999999999999999999999999999999999998876
No 56
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=98.71 E-value=6.1e-09 Score=79.51 Aligned_cols=44 Identities=30% Similarity=0.454 Sum_probs=41.5
Q ss_pred CCCCccccHHHHHHHHHHH---hhCCCCCHHHHHHHHhhcCCCcccc
Q psy6088 245 RKKRTSIETSVRVALEKAF---LQNPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 245 RRkRTsfs~~Qk~~LEk~F---~qnpkPS~~Ei~~LA~~L~LekeVV 288 (289)
||+||.|+..++..||.+| ..++||+..++.+||..+||++.+|
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV 48 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQV 48 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHH
Confidence 6789999999999999999 9999999999999999999998876
No 57
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.69 E-value=8.8e-09 Score=80.33 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=44.1
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcC---------------CCcccc
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLC---------------MNISLT 288 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~---------------LekeVV 288 (289)
.++||+||.|+..++..||++|..++||+..++.+||+.|| |++.+|
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV 66 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKV 66 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHH
Confidence 36788999999999999999999999999999999999999 988776
No 58
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.68 E-value=1.4e-08 Score=77.98 Aligned_cols=43 Identities=14% Similarity=0.028 Sum_probs=40.2
Q ss_pred CCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCcccc
Q psy6088 246 KKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 246 RkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVV 288 (289)
++|+.|+.+|+..||+.|..|+|||..++.+||+.+||++.+|
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qI 47 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEI 47 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHh
Confidence 3566799999999999999999999999999999999999887
No 59
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=98.67 E-value=1.5e-08 Score=77.56 Aligned_cols=46 Identities=13% Similarity=0.254 Sum_probs=43.2
Q ss_pred ccCCCCccccHHHHHHHHHHHhh---CCCCCHHHHHHHHhhcCCCcccc
Q psy6088 243 RRRKKRTSIETSVRVALEKAFLQ---NPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 243 RkRRkRTsfs~~Qk~~LEk~F~q---npkPS~~Ei~~LA~~L~LekeVV 288 (289)
++||+||.|+..++..||.+|.. +|||+..++.+||..+||++.+|
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV 54 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQI 54 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHh
Confidence 67889999999999999999988 69999999999999999998876
No 60
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1e-08 Score=76.85 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=43.0
Q ss_pred ccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 243 RRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 243 RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
...+.||.|+..|+..||++|..|+||+..++.+||..|||++.+|+
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~ 53 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVR 53 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhh
Confidence 34557999999999999999999999999999999999999988763
No 61
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.9e-08 Score=81.35 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=38.7
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhc
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNL 281 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L 281 (289)
.++||.||.|++.++..||++|..++||+..+|++||+.|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~l 43 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEEC 43 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999
No 62
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=98.62 E-value=1.8e-08 Score=71.94 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=40.2
Q ss_pred CCccccHHHHHHHHHHHhh---CCCCCHHHHHHHHhhcCCCcccc
Q psy6088 247 KRTSIETSVRVALEKAFLQ---NPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 247 kRTsfs~~Qk~~LEk~F~q---npkPS~~Ei~~LA~~L~LekeVV 288 (289)
|||.|+..++..||++|.. +|||+..++.+||..+||++.+|
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV 45 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQI 45 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHH
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHH
Confidence 5899999999999999999 99999999999999999998876
No 63
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=98.61 E-value=1.6e-08 Score=71.65 Aligned_cols=41 Identities=32% Similarity=0.322 Sum_probs=37.4
Q ss_pred ccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 249 TSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 249 Tsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
|+|+..|+..||+.|..|+||+..++.+||..+||++.+|+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 42 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVK 42 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhh
Confidence 78999999999999999999999999999999999998763
No 64
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=98.57 E-value=2.7e-08 Score=75.89 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=40.1
Q ss_pred cCCCCccccHHHHHHHHHHHhh---CCCCCHHHHHHHHhhcCCCcccc
Q psy6088 244 RRKKRTSIETSVRVALEKAFLQ---NPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 244 kRRkRTsfs~~Qk~~LEk~F~q---npkPS~~Ei~~LA~~L~LekeVV 288 (289)
|+|+||.|+..++..||.+|.. +|||+..++.+||..+||++.+|
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV 49 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQI 49 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHc
Confidence 4567788999999999999999 99999999999999999998876
No 65
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=3.1e-08 Score=74.26 Aligned_cols=44 Identities=30% Similarity=0.308 Sum_probs=40.5
Q ss_pred CCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 246 KKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 246 RkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
+||+-|+..|+..||++|..|+||+..++.+||..|||++.+|+
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREID 52 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhh
Confidence 45677999999999999999999999999999999999998763
No 66
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=98.56 E-value=3.2e-08 Score=78.96 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=32.9
Q ss_pred cccCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhh
Q psy6088 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADN 280 (289)
Q Consensus 242 ~RkRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~ 280 (289)
.++||+||.|+..++..||++|..++||+..++.+||+.
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~ 45 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEE 45 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 367889999999999999999999999999999999999
No 67
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=2.5e-08 Score=76.24 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 254 SVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 254 ~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
+++..||+||..|+||+.+||..||+.+||+++|||
T Consensus 15 ~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVr 50 (71)
T 2da7_A 15 DHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVK 50 (71)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 589999999999999999999999999999999986
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=4e-07 Score=66.91 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=38.8
Q ss_pred CCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 247 KRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 247 kRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.+......|+..||++|..|+||+..+|.+||.+|||++++|+
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVq 48 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVK 48 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcC
Confidence 4455678999999999999999999999999999999998874
No 69
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.29 E-value=1.2e-07 Score=71.05 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=37.5
Q ss_pred CCccccHHHHHHHHHHH-hhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 247 KRTSIETSVRVALEKAF-LQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 247 kRTsfs~~Qk~~LEk~F-~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
+|+.++..++..||++| ..++||+..++.+||..|||++.+|+
T Consensus 11 ~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVq 54 (72)
T 2cqx_A 11 DSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQ 54 (72)
T ss_dssp CCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcc
Confidence 34445566899999999 99999999999999999999998873
No 70
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=98.22 E-value=5.3e-07 Score=67.87 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCcccc
Q psy6088 252 ETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 252 s~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVV 288 (289)
+..|+..||+.|..|+|||..|+.+||..+||++++|
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qV 48 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEI 48 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHh
Confidence 4789999999999999999999999999999999887
No 71
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.21 E-value=7.4e-07 Score=69.99 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=38.1
Q ss_pred cccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 250 SIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 250 sfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.|+..|+..||+.|..|+||+..++.+||..|||++.+|+
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVk 56 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREID 56 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCe
Confidence 7899999999999999999999999999999999998873
No 72
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=7.4e-07 Score=69.06 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=37.3
Q ss_pred ccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 251 IETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 251 fs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
|+..|+..||++|..|+||+..++.+||..|||++.+|+
T Consensus 20 ~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~ 58 (89)
T 2dmp_A 20 KTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREID 58 (89)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhcc
Confidence 899999999999999999999999999999999998873
No 73
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.05 E-value=2.1e-06 Score=64.34 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=36.9
Q ss_pred cccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 250 SIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 250 sfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
..+..++..||+.|..++||+..++.+||.+|||++.+|+
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVq 49 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVK 49 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhhee
Confidence 3478999999999999999999999999999999998873
No 74
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=97.88 E-value=8.2e-06 Score=60.07 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=35.8
Q ss_pred cccHHHHHHHHHHHh---hCCCCCHHHHHHHHhhcCCCcccc
Q psy6088 250 SIETSVRVALEKAFL---QNPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 250 sfs~~Qk~~LEk~F~---qnpkPS~~Ei~~LA~~L~LekeVV 288 (289)
.|+..++..||.+|. .+|||+..++.+||..+||++.+|
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV 45 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQV 45 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHh
Confidence 689999999999999 999999999999999999998876
No 75
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.82 E-value=7.3e-06 Score=60.96 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=32.4
Q ss_pred HHHHHHHHH-hhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 255 VRVALEKAF-LQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 255 Qk~~LEk~F-~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
++..||++| ..++||+..+|.+||.+|||++++|+
T Consensus 11 ~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVk 46 (64)
T 1x2m_A 11 PNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQ 46 (64)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHH
Confidence 699999999 56999999999999999999999873
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=97.58 E-value=1.4e-05 Score=73.05 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=42.6
Q ss_pred cCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 244 RRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 244 kRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.++.|+.|+..++..||+.|..++||+..+|.+||.++||++.+|+
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~ 410 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVR 410 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhh
Confidence 4567889999999999999999999999999999999999998873
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=97.10 E-value=0.00026 Score=55.90 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=36.3
Q ss_pred cccHHHHHHHHHHHhh---CCCCCHHHHHHHHhhcCCCcccc
Q psy6088 250 SIETSVRVALEKAFLQ---NPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 250 sfs~~Qk~~LEk~F~q---npkPS~~Ei~~LA~~L~LekeVV 288 (289)
-|+..++..|+.+|.. +||||.+++.+||.++||++.+|
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV 52 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQV 52 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHH
Confidence 4788999999999988 99999999999999999998776
No 78
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=96.77 E-value=0.0016 Score=48.46 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhh
Q psy6088 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKL 210 (289)
Q Consensus 154 ~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKL 210 (289)
.+.+.|++.+|..|...|+||.+++..+| .|++||+|+|+= ..++..+.+|
T Consensus 10 ~~~~~~g~~l~~~R~~~gltq~elA~~~g------is~~~is~~E~G~~~p~~~~l~~i 62 (86)
T 3eus_A 10 PEHVYLCQRLRQARLDAGLTQADLAERLD------KPQSFVAKVETRERRLDVIEFAKW 62 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHTT------CCHHHHHHHHTTSSCCBHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhC------cCHHHHHHHHCCCCCCCHHHHHHH
Confidence 45567999999999999999999998886 588999999974 4566655554
No 79
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=96.75 E-value=0.0015 Score=50.44 Aligned_cols=56 Identities=27% Similarity=0.299 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhHHHH
Q psy6088 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKPLLQ 215 (289)
Q Consensus 154 ~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkPLLe 215 (289)
+..+.|++.+|..|...|+||.+++..+| .|++||+|+|+= ..++..+.+|--.|.
T Consensus 24 ~~~~~ig~~lr~~R~~~gltq~elA~~~g------is~~~is~iE~G~~~ps~~~l~~ia~~l~ 81 (99)
T 3g5g_A 24 FLLSKVSFVIKKIRLEKGMTQEDLAYKSN------LDRTYISGIERNSRNLTIKSLELIMKGLE 81 (99)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHTTCSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 56689999999999999999999998876 578999999984 677777777755443
No 80
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=96.64 E-value=0.0023 Score=44.81 Aligned_cols=53 Identities=23% Similarity=0.419 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhh
Q psy6088 152 DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKL 210 (289)
Q Consensus 152 dl~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKL 210 (289)
+.+.+..|++.+|..|...|+||.+++..+| .|+++|+|+|+= ..+...+.++
T Consensus 7 ~~~~~~~~~~~l~~~r~~~g~s~~~lA~~~g------is~~~i~~~e~g~~~~~~~~l~~l 61 (74)
T 1y7y_A 7 HYADLVKFGQRLRELRTAKGLSQETLAFLSG------LDRSYVGGVERGQRNVSLVNILKL 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHTTCSCCBHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHCCCCCCCHHHHHHH
Confidence 3467789999999999999999999999886 678999999974 3455554444
No 81
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=96.63 E-value=0.0045 Score=44.45 Aligned_cols=51 Identities=20% Similarity=0.397 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhh
Q psy6088 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKL 210 (289)
Q Consensus 154 ~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKL 210 (289)
.+...|++.+|..|...|+||.+++..+| .|++||+|+|+= ..++..+.++
T Consensus 6 ~~~~~~~~~l~~~r~~~glsq~~lA~~~g------is~~~i~~~e~g~~~~~~~~l~~~ 58 (84)
T 2ef8_A 6 HRYRCLVQLLTKLRKEASLSQSELAIFLG------LSQSDISKIESFERRLDALELFEL 58 (84)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHTTSSCCBHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhC------CCHHHHHHHHcCCCCCCHHHHHHH
Confidence 46788999999999999999999999887 578999999984 4554444443
No 82
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=96.49 E-value=0.0032 Score=49.63 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhcccchHHHHh
Q psy6088 151 TDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCK 209 (289)
Q Consensus 151 ~dl~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLqLSfKNmcK 209 (289)
....-.+++.+.+|..|...|+||.+++..+| .|++||+|+|+=+.++....+
T Consensus 29 ~~~~l~~~lG~~ir~~R~~~glTQ~eLA~~~g------vs~~~is~~E~G~~~~~~l~~ 81 (101)
T 4ghj_A 29 TAAALAEEIGDRLKQARLNRDLTQSEVAEIAG------IARKTVLNAEKGKVQLDIMIA 81 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT------SCHHHHHHHHTTCCBHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcC------CCHHHHHHHHCCCCCHHHHHH
Confidence 33455678999999999999999999999876 588999999987776654433
No 83
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=96.49 E-value=0.0056 Score=42.69 Aligned_cols=55 Identities=13% Similarity=0.229 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhH
Q psy6088 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKP 212 (289)
Q Consensus 154 ~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkP 212 (289)
+..+.|++.+|..|...|+||.+++..+|. ..|++||+|+|+= ..+...+.+|--
T Consensus 4 ~~~~~~g~~l~~~r~~~glsq~~lA~~~g~----~is~~~i~~~e~g~~~~~~~~l~~la~ 60 (71)
T 2ewt_A 4 EYAKQLGAKLRAIRTQQGLSLHGVEEKSQG----RWKAVVVGSYERGDRAVTVQRLAELAD 60 (71)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHTTT----SSCHHHHHHHHHTCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCC----cCCHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 456789999999999999999999887643 4788999999974 466666555533
No 84
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=96.41 E-value=0.0047 Score=44.59 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhHHHH---HHHHHh
Q psy6088 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKPLLQ---KWLSDA 221 (289)
Q Consensus 154 ~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkPLLe---kWLeEA 221 (289)
++...|++.+|..|...|+||.+++..+| .|++||+|+|+= ..+...+.+|--.|. .||-+.
T Consensus 10 ~~~~~~~~~l~~~R~~~gltq~elA~~~g------is~~~is~~e~g~~~~~~~~l~~l~~~l~~~~~~l~~~ 76 (83)
T 3f6w_A 10 ARYQALLDLLLEARSAAGITQKELAARLG------RPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLSK 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHT------SCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 45678999999999999999999999886 578999999974 467777777765554 355443
No 85
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=96.38 E-value=0.0041 Score=44.95 Aligned_cols=55 Identities=27% Similarity=0.294 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhHHH
Q psy6088 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKPLL 214 (289)
Q Consensus 154 ~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkPLL 214 (289)
+..+.|++.+|..|...|+||.+++..+| .|++||+|+|+= ..+...+.+|--.|
T Consensus 7 ~~~~~~g~~lk~~R~~~glsq~~lA~~~g------is~~~i~~~e~g~~~~~~~~l~~ia~~l 63 (82)
T 3s8q_A 7 FLLSKVSFVIKKIRLEKGMTQEDLAYKSN------LDRTYISGIERNSRNLTIKSLELIMKGL 63 (82)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHTTCCCCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhC------cCHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999999886 478999999985 57777777775544
No 86
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=96.34 E-value=0.0041 Score=45.18 Aligned_cols=53 Identities=32% Similarity=0.433 Sum_probs=41.5
Q ss_pred HHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhh--cccchHHHHhhhHHH
Q psy6088 156 LEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA--LNLSFKNMCKLKPLL 214 (289)
Q Consensus 156 LE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEa--LqLSfKNmcKLkPLL 214 (289)
...|++.+|..|...|+||.+++..+| .|++||+|+|+ -..+...+.+|--.|
T Consensus 10 ~~~~~~~l~~~r~~~glsq~~lA~~~g------is~~~i~~~e~g~~~~~~~~l~~i~~~l 64 (88)
T 2wiu_B 10 PTQLANAMKLVRQQNGWTQSELAKKIG------IKQATISNFENNPDNTTLTTFFKILQSL 64 (88)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHHCGGGCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhC------CCHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 457899999999999999999998886 57899999997 445555555544333
No 87
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=96.31 E-value=0.0048 Score=44.75 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhcc--cchHHHHhh
Q psy6088 153 LEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALN--LSFKNMCKL 210 (289)
Q Consensus 153 l~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLq--LSfKNmcKL 210 (289)
.++...|...+|..|...|+||.+++..+| .|++||+++|+=. .+...+.+|
T Consensus 7 ~~~~~~l~~~l~~~r~~~gltq~~lA~~~g------vs~~~is~~e~g~~~~~~~~~~~i 60 (80)
T 3kz3_A 7 LEDARRLKAIWEKKKNELGLSYESVADKMG------MGQSAVAALFNGINALNAYNAALL 60 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHTT------SCHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHhC------cCHHHHHHHHcCCCCCCHHHHHHH
Confidence 456678999999999999999999999987 4889999999754 344444444
No 88
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=96.06 E-value=0.0084 Score=42.30 Aligned_cols=54 Identities=30% Similarity=0.388 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhHHH
Q psy6088 155 ELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKPLL 214 (289)
Q Consensus 155 ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkPLL 214 (289)
-...|++.+|..|...|+||.+++..+| .|++||+|+|+= ..+...+.+|--.|
T Consensus 7 ~~~~~~~~l~~~r~~~glsq~~lA~~~g------is~~~i~~~e~g~~~~~~~~l~~la~~l 62 (77)
T 2b5a_A 7 IKRKFGRTLKKIRTQKGVSQEELADLAG------LHRTYISEVERGDRNISLINIHKICAAL 62 (77)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHTTCSCCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHC------CCHHHHHHHHCCCCCCCHHHHHHHHHHh
Confidence 3567999999999999999999999886 578999999974 56777766665544
No 89
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=96.06 E-value=0.014 Score=43.64 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhHHHH---HHHHHhhc
Q psy6088 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKPLLQ---KWLSDADS 223 (289)
Q Consensus 154 ~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkPLLe---kWLeEAE~ 223 (289)
+....|++.+|..|...|+||.+++..+| .|++||+|+|+= ..+...+.+|--+|. .||...+.
T Consensus 5 ~~~~~~~~~lk~~r~~~glsq~~lA~~~g------is~~~is~~e~G~~~p~~~~l~~ia~~l~v~~~~l~~~~~ 73 (94)
T 2kpj_A 5 KQKAIFSENLNSYIAKSEKTQLEIAKSIG------VSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIEDKK 73 (94)
T ss_dssp HHHHHHHHHHHHHHTTSSSCHHHHHHHHT------CCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHSCSC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHhCCCCCCHHHHHHHHHHHCcCHHHHhcCCC
Confidence 45678999999999999999999998886 578999999974 456777777766664 47665543
No 90
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=96.01 E-value=0.0088 Score=41.96 Aligned_cols=60 Identities=28% Similarity=0.417 Sum_probs=46.1
Q ss_pred HHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhHHHH---HHHHHhh
Q psy6088 157 EQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKPLLQ---KWLSDAD 222 (289)
Q Consensus 157 E~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkPLLe---kWLeEAE 222 (289)
+.|++.+|..|...|+||.+++..+| .|++||+|+|+= ..+...+.+|--.|. .||-..+
T Consensus 4 ~~~~~~l~~~r~~~gls~~~lA~~~g------is~~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~~l~~~~ 68 (76)
T 1adr_A 4 QLMGERIRARRKKLKIRQAALGKMVG------VSNVAISQWERSETEPNGENLLALSKALQCSPDYLLKGD 68 (76)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHT------SCHHHHHHHHTTSSCCCHHHHHHHHHHTTSCHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHhcCC
Confidence 35889999999999999999999886 678999999983 456666666655543 5666544
No 91
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=95.78 E-value=0.01 Score=43.31 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=44.6
Q ss_pred HHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc---ccchHHHHhhhHHHH
Q psy6088 158 QFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL---NLSFKNMCKLKPLLQ 215 (289)
Q Consensus 158 ~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL---qLSfKNmcKLkPLLe 215 (289)
.|...+|..|...|+||.+++..+| .|+++|+|+|+= ..+...+.+|-=+|.
T Consensus 10 ~~~~~ik~~R~~~gltq~elA~~~g------is~~~is~~E~G~~~~p~~~~l~~ia~~l~ 64 (78)
T 3qq6_A 10 MIGQRIKQYRKEKGYSLSELAEKAG------VAKSYLSSIERNLQTNPSIQFLEKVSAVLD 64 (78)
T ss_dssp THHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHTTSCCCCBHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCCCCCHHHHHHHHHHHC
Confidence 6889999999999999999999887 488999999975 688888888766664
No 92
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=95.76 E-value=0.013 Score=41.39 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=44.0
Q ss_pred HHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc---ccchHHHHhhhHHHH
Q psy6088 157 EQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL---NLSFKNMCKLKPLLQ 215 (289)
Q Consensus 157 E~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL---qLSfKNmcKLkPLLe 215 (289)
+.|++.+|..|...|+||.+++..+| .|++||+|+|+= ..+...+.+|--.|.
T Consensus 6 ~~~~~~l~~~r~~~g~sq~~lA~~~g------is~~~i~~~e~g~~~~~~~~~l~~ia~~l~ 61 (78)
T 3b7h_A 6 EFVSEHLMELITQQNLTINRVATLAG------LNQSTVNAMFEGRSKRPTITTIRKVCGTLG 61 (78)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHCTTCCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCCCCCHHHHHHHHHHcC
Confidence 57899999999999999999998876 578999999975 467777777766553
No 93
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=95.71 E-value=0.013 Score=43.05 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhHHH
Q psy6088 153 LEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKPLL 214 (289)
Q Consensus 153 l~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkPLL 214 (289)
....+.+.+.+|..|...|+||.+++..+| .|++||+|+|+= ..+...+.+|--.|
T Consensus 12 ~~~~~~l~~~l~~~R~~~glsq~~lA~~~g------is~~~is~~e~g~~~~~~~~l~~ia~~l 69 (92)
T 1lmb_3 12 LEDARRLKAIYEKKKNELGLSQESVADKMG------MGQSGVGALFNGINALNAYNAALLAKIL 69 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHT------SCHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 344566777888889999999999998876 578999999984 45656655554443
No 94
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=95.64 E-value=0.0067 Score=42.03 Aligned_cols=38 Identities=32% Similarity=0.426 Sum_probs=33.2
Q ss_pred HHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhcc
Q psy6088 158 QFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALN 201 (289)
Q Consensus 158 ~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLq 201 (289)
.|++.+|..|...|+||.+++..+| .|++||+|+|+=.
T Consensus 3 ~~~~~l~~~r~~~glsq~~lA~~~g------is~~~i~~~e~g~ 40 (71)
T 1zug_A 3 TLSERLKKRRIALKMTQTELATKAG------VKQQSIQLIEAGV 40 (71)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHT------SCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhC------CCHHHHHHHHcCC
Confidence 5788999999999999999998876 6789999999743
No 95
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=95.54 E-value=0.018 Score=39.41 Aligned_cols=50 Identities=26% Similarity=0.382 Sum_probs=39.1
Q ss_pred HHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhH
Q psy6088 157 EQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKP 212 (289)
Q Consensus 157 E~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkP 212 (289)
+.|++.+|..|...|+||.+++..+| .|++||+|+|+= ..+...+.++--
T Consensus 4 ~~~~~~l~~~r~~~g~s~~~lA~~~g------is~~~i~~~e~g~~~~~~~~l~~i~~ 55 (68)
T 2r1j_L 4 QLMGERIRARRKKLKIRQAALGKMVG------VSNVAISQWERSETEPNGENLLALSK 55 (68)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHT------SCHHHHHHHHTTSSCCBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHC------CCHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 45889999999999999999998886 678999999974 345555555433
No 96
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=95.53 E-value=0.023 Score=44.07 Aligned_cols=55 Identities=22% Similarity=0.337 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhHHHH
Q psy6088 155 ELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKPLLQ 215 (289)
Q Consensus 155 ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkPLLe 215 (289)
-.+.|++.+|..|...|+||.+++..+| .|++||+|+|+= ..+...+.+|-=.|.
T Consensus 18 ~~~~~g~~lr~~R~~~gltq~elA~~~g------is~~~is~~E~G~~~p~~~~l~~ia~~l~ 74 (114)
T 3vk0_A 18 LRAVLAYNMRLFRVNKGWSQEELARQCG------LDRTYVSAVERKRWNIALSNIEKMAAALG 74 (114)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 3478999999999999999999998876 478999999974 467777777655554
No 97
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=95.52 E-value=0.016 Score=42.74 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=38.0
Q ss_pred HHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhh
Q psy6088 158 QFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKL 210 (289)
Q Consensus 158 ~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKL 210 (289)
.|++.+|..|...|+||.+++..+| .|++||+++|+= ..+...+.+|
T Consensus 13 ~~~~~l~~~r~~~glsq~~lA~~~g------is~~~is~~e~g~~~p~~~~l~~l 61 (91)
T 1x57_A 13 EVGKVIQQGRQSKGLTQKDLATKIN------EKPQVIADYESGRAIPNNQVLGKI 61 (91)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHT------SCHHHHHHHHHTCSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCCCCHHHHHHH
Confidence 5889999999999999999998886 678999999984 3455544444
No 98
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=95.43 E-value=0.014 Score=46.92 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc---ccchHHHHhhhHHH
Q psy6088 155 ELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL---NLSFKNMCKLKPLL 214 (289)
Q Consensus 155 ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL---qLSfKNmcKLkPLL 214 (289)
-...|+..+|..|...|+||.+++..+| .|+++|+|+|+= +.++..++++--.|
T Consensus 37 ~~~~lg~~L~~~R~~~glTQ~eLA~~lG------is~~~Is~iE~G~~~~~s~~~l~~ia~~L 93 (120)
T 2o38_A 37 TKLRLAYALNAVIDRARLSQAAAAARLG------INQPKVSALRNYKLEGFSVERLMTLLNAL 93 (120)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHTTCCTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 3457889999999999999999998876 689999999984 55666655554333
No 99
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=95.42 E-value=0.0091 Score=41.13 Aligned_cols=37 Identities=27% Similarity=0.513 Sum_probs=32.5
Q ss_pred HHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhcc
Q psy6088 159 FAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALN 201 (289)
Q Consensus 159 FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLq 201 (289)
|++.+|..|...|+||.+++..+| .|++||+++|+=.
T Consensus 2 ~~~~l~~~r~~~glsq~~lA~~~g------is~~~i~~~e~g~ 38 (69)
T 1r69_A 2 ISSRVKSKRIQLGLNQAELAQKVG------TTQQSIEQLENGK 38 (69)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHT------SCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCC
Confidence 778899999999999999999886 6789999999753
No 100
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=95.25 E-value=0.0099 Score=42.93 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=29.9
Q ss_pred HHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc
Q psy6088 160 AKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL 200 (289)
Q Consensus 160 Ak~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL 200 (289)
++.+|..|..+|+||.+++..+| +|++||+|+|+=
T Consensus 13 g~~lr~~R~~~gltq~elA~~~g------vs~~tis~~E~G 47 (73)
T 3fmy_A 13 PEFIVKVRKKLSLTQKEASEIFG------GGVNAFSRYEKG 47 (73)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHC------SCTTHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHhC------cCHHHHHHHHcC
Confidence 45678889999999999999886 478999999975
No 101
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=95.24 E-value=0.014 Score=41.81 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=43.9
Q ss_pred HHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhHHHH---HHHHHhh
Q psy6088 159 FAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKPLLQ---KWLSDAD 222 (289)
Q Consensus 159 FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkPLLe---kWLeEAE 222 (289)
|++.+|..|...|+||.+++..+| .|++||+|+|+= ..+...+.+|--.|. .||-+-+
T Consensus 3 ~~~~lk~~r~~~glsq~~lA~~~g------is~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l~~~~ 65 (77)
T 2k9q_A 3 LSNELKVERIRLSLTAKSVAEEMG------ISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNALFDRI 65 (77)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHT------SCHHHHHHHHTCCSCCHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhC------CCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHHHhCcc
Confidence 678899999999999999998876 578999999974 356666666655542 4655544
No 102
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=95.20 E-value=0.038 Score=40.48 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhcc---cchHHHHhh
Q psy6088 153 LEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALN---LSFKNMCKL 210 (289)
Q Consensus 153 l~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLq---LSfKNmcKL 210 (289)
......|++.+|..|...|+||.+++..+| .|++||+|+|+=. .+++.+.+|
T Consensus 13 ~~~~~~~~~~l~~~r~~~glsq~elA~~~g------is~~~is~~e~g~~~~~~~~~l~~l 67 (83)
T 2a6c_A 13 MKMRSQLLIVLQEHLRNSGLTQFKAAELLG------VTQPRVSDLMRGKIDLFSLESLIDM 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCHHHHHHHHT------SCHHHHHHHHTTCGGGCCHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCCCCCHHHHHHH
Confidence 455678999999999999999999998876 5789999999743 455544443
No 103
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=95.19 E-value=0.019 Score=44.07 Aligned_cols=58 Identities=12% Similarity=0.261 Sum_probs=46.2
Q ss_pred HHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhh--cccchHHHHhhhHHHHH---HHHH
Q psy6088 157 EQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA--LNLSFKNMCKLKPLLQK---WLSD 220 (289)
Q Consensus 157 E~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEa--LqLSfKNmcKLkPLLek---WLeE 220 (289)
+.|++.+|..|...|+||.+++..+| .|++||+|+|+ -..+...+.+|--+|.. ||-.
T Consensus 8 ~~~~~~l~~~r~~~glsq~~lA~~~g------is~~~i~~~e~g~~~p~~~~l~~la~~l~v~~~~l~~ 70 (114)
T 3op9_A 8 HQFAENLSRLKKEHGLKNHQIAELLN------VQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVG 70 (114)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHT------SCHHHHHHHHHTSSCCCHHHHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHhc
Confidence 35889999999999999999998886 48899999998 45777777777655543 5543
No 104
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=95.14 E-value=0.014 Score=46.47 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhccc
Q psy6088 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNL 202 (289)
Q Consensus 154 ~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLqL 202 (289)
+.+..|.+.+|..|...|+||.+|+..+| +|+++|+++|+=..
T Consensus 3 ~~~~~lG~~Lr~~R~~~glSq~eLA~~~g------is~~~is~iE~G~~ 45 (112)
T 2wus_R 3 EKWKELGETFRKKREERRITLLDASLFTN------INPSKLKRIEEGDL 45 (112)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHSS------CCHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHCCCC
Confidence 45778999999999999999999999875 67889999997543
No 105
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=95.08 E-value=0.01 Score=45.00 Aligned_cols=59 Identities=15% Similarity=0.037 Sum_probs=40.2
Q ss_pred HHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccch--HHHHhhhHHHHHHHHHhh
Q psy6088 158 QFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSF--KNMCKLKPLLQKWLSDAD 222 (289)
Q Consensus 158 ~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSf--KNmcKLkPLLekWLeEAE 222 (289)
.|++.+|..|...|+||.+++..+| +|++||+|+|+= ..+. ..+|++.-+=-.||.+.-
T Consensus 30 ~~~~~lk~~R~~~glsq~elA~~lg------vs~~~is~~E~G~~~p~~~~~~l~~~l~~~~~~l~~~~ 92 (99)
T 2ppx_A 30 PRMPRIKIIRRALKLTQEEFSARYH------IPLGTLRDWEQGRSEPDQPARAYLKIIAVDPEGTAAAL 92 (99)
T ss_dssp --CCHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHTTSSCCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhC------cCHHHHHHHHcCCCCCCHHHHHHHHHHCcCHHHHHHHH
Confidence 5888999999999999999998886 578999999973 2332 233333333234665543
No 106
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=94.95 E-value=0.02 Score=44.80 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=44.0
Q ss_pred HHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhHHHH
Q psy6088 156 LEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKPLLQ 215 (289)
Q Consensus 156 LE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkPLLe 215 (289)
+..|++.+|..|...|+||.+++..+| +|++||+++|+= ..+...+.+|--+|.
T Consensus 10 ~~~~g~~lk~~R~~~glsq~~lA~~~g------is~~~is~~E~g~~~p~~~~l~~ia~~l~ 65 (126)
T 3ivp_A 10 FRALGLAIKEARKKQGLTREQVGAMIE------IDPRYLTNIENKGQHPSLQVLYDLVSLLN 65 (126)
T ss_dssp THHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHHSCCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhC------cCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 457889999999999999999999876 578999999974 467777776655554
No 107
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=94.82 E-value=0.016 Score=43.16 Aligned_cols=48 Identities=13% Similarity=0.098 Sum_probs=37.6
Q ss_pred HHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhh--cccchHHHHhhhH
Q psy6088 159 FAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA--LNLSFKNMCKLKP 212 (289)
Q Consensus 159 FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEa--LqLSfKNmcKLkP 212 (289)
|++.+|..|...|+||.+++..+| .|++||+|+|+ -..+...+.+|--
T Consensus 5 ~~~~l~~~r~~~gltq~~lA~~~g------is~~~is~~e~g~~~p~~~~l~~ia~ 54 (99)
T 2l49_A 5 ISEKIVLMRKSEYLSRQQLADLTG------VPYGTLSYYESGRSTPPTDVMMNILQ 54 (99)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHHC------CCHHHHHHHTTTSSCCCHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 678889999999999999998876 67899999998 3455555555433
No 108
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=94.82 E-value=0.0056 Score=54.19 Aligned_cols=124 Identities=10% Similarity=0.132 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhh--cccchHHHHhhhHHHHH---HHHHhhcCCCCC
Q psy6088 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA--LNLSFKNMCKLKPLLQK---WLSDADSTTANP 228 (289)
Q Consensus 154 ~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEa--LqLSfKNmcKLkPLLek---WLeEAE~~~~n~ 228 (289)
++-+.|.+.+|..|...|+||.+++..+| .|++||+|+|+ -..|...+.+|--.|.. ||-..+......
T Consensus 26 ~~~~~~~~~l~~~r~~~g~t~~~la~~~g------~s~~~is~~e~g~~~p~~~~l~~ia~~l~~~~~~l~~~~~~~~~~ 99 (311)
T 4ich_A 26 SESDELRRRVRGLIHSRPGAQREFAAAIG------LDESKLSKSLNGTRRFSPHELVRIAEHSGVTVNWLINGRDDARTV 99 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchHHHHHHHHHHHHHCCCCHHHHHHHhC------CCHHHHHHHHcCCCCCCHHHHHHHHHHHCCChhhhhcCCCccccc
Confidence 33467999999999999999999998876 57899999997 45677777777666654 554333221111
Q ss_pred CCCCCCCCChhhhccc-CCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCcc
Q psy6088 229 SCLSNPLTTPEAIGRR-RKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNIS 286 (289)
Q Consensus 229 ~~l~~~l~~~e~~~Rk-RRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~Leke 286 (289)
.....+. .....++ ++++..--...+.+..+.|....|- .--+.+||+..|+++.
T Consensus 100 ~~~~~~~--~~~~~~~~~~~~~~~r~~il~aa~~l~~~~G~~-~~T~~~IA~~AGvs~g 155 (311)
T 4ich_A 100 AAVPAPT--ARSRSAPAGEPQSEARRRILETAWRLIARRGYH-NVRIHDIASELGTSNA 155 (311)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHHHCGG-GCCHHHHHHHHTCCHH
T ss_pred cCCCCcc--cccCCCCCccchhhHHHHHHHHHHHHHHHcCCc-cCCHHHHHHHhCCCch
Confidence 0000000 0001111 1111112234555666777776553 2345566777777653
No 109
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=94.60 E-value=0.039 Score=42.48 Aligned_cols=62 Identities=19% Similarity=0.166 Sum_probs=49.7
Q ss_pred HHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhHHHH----HHHHHhhc
Q psy6088 156 LEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKPLLQ----KWLSDADS 223 (289)
Q Consensus 156 LE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkPLLe----kWLeEAE~ 223 (289)
.+.|++.+|..|...|+||.+++..+| +|+++|+|+|+= +.+...+.+|--.|. .||.+.+.
T Consensus 26 ~~~~g~~l~~~R~~~glsq~~lA~~~g------is~~~is~~E~g~~~~~~~~l~~la~~l~v~~~~l~~~~~~ 93 (117)
T 3f52_A 26 REALGAALRSFRADKGVTLRELAEASR------VSPGYLSELERGRKEVSSELLASVCHALGASVADVLIEAAG 93 (117)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHTT------SCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCHHHHHhcccc
Confidence 468999999999999999999999887 588999999964 578888877765553 46665543
No 110
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=94.12 E-value=0.041 Score=41.43 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=45.0
Q ss_pred HHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc---ccchHHHHhhhHHHH---HHHHH
Q psy6088 159 FAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL---NLSFKNMCKLKPLLQ---KWLSD 220 (289)
Q Consensus 159 FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL---qLSfKNmcKLkPLLe---kWLeE 220 (289)
|++.+|..|...|+||.+++..+| .|++||+|+|+= ..+...+.+|--.|. .||-.
T Consensus 2 ~~~~l~~~r~~~gltq~~lA~~~g------is~~~i~~~e~g~~~~p~~~~l~~ia~~l~v~~~~l~~ 63 (111)
T 1b0n_A 2 IGQRIKQYRKEKGYSLSELAEKAG------VAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLD 63 (111)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHHC
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHHHHhc
Confidence 577899999999999999999887 578999999975 677777777766663 46654
No 111
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=93.96 E-value=0.012 Score=39.97 Aligned_cols=48 Identities=25% Similarity=0.242 Sum_probs=36.1
Q ss_pred HHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhHHH
Q psy6088 161 KTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKPLL 214 (289)
Q Consensus 161 k~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkPLL 214 (289)
+.+|..|...|+||.+++..+| .|++||+|+|+= ..+...+.++--.|
T Consensus 4 ~~l~~~r~~~g~s~~~lA~~~g------is~~~i~~~e~g~~~~~~~~l~~i~~~l 53 (66)
T 2xi8_A 4 NNLKLIREKKKISQSELAALLE------VSRQTINGIEKNKYNPSLQLALKIAYYL 53 (66)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHT------SCHHHHHHHHTTSCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4577888999999999998886 678999999973 45555555554433
No 112
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=93.95 E-value=0.028 Score=44.48 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=28.3
Q ss_pred HHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc
Q psy6088 162 TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL 200 (289)
Q Consensus 162 ~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL 200 (289)
.+|.-|.++|+||.+++..+| +|++||+|+|+=
T Consensus 75 ~l~~~R~~~glsq~~la~~~g------~s~~~i~~~E~g 107 (133)
T 3o9x_A 75 FIVKVRKKLSLTQKEASEIFG------GGVNAFSRYEKG 107 (133)
T ss_dssp HHHHHHHHTTCCHHHHHHHHC------SCTTHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHC------CCHHHHHHHHCC
Confidence 366778999999999999886 478899999985
No 113
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=93.88 E-value=0.069 Score=44.35 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhHHHH
Q psy6088 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKPLLQ 215 (289)
Q Consensus 154 ~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkPLLe 215 (289)
+-...|++.+|..|...|+||.+++..+| .|++||+|+|+= +.+.+.+.+|--.|.
T Consensus 7 ~~~~~~~~~l~~~r~~~gltq~~lA~~~g------is~~~is~~e~g~~~p~~~~l~~ia~~l~ 64 (192)
T 1y9q_A 7 MFKSQIANQLKNLRKSRGLSLDATAQLTG------VSKAMLGQIERGESSPTIATLWKIASGLE 64 (192)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHS------SCHHHHHHHHTTCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 34567999999999999999999998876 678999999974 567777777766654
No 114
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=93.86 E-value=0.058 Score=41.75 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=33.8
Q ss_pred HHHHHHHhhhhh--hcccchhHHhhhhhhccCCCCcchhhhhhhhc
Q psy6088 157 EQFAKTFKQRRI--KLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL 200 (289)
Q Consensus 157 E~FAk~FKqrRI--kLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL 200 (289)
..|++.+|..|. ..|+||.+++..+| .|++||+++|+=
T Consensus 33 ~~~g~~lk~~R~~~~~glsq~elA~~~g------is~~~is~~E~G 72 (107)
T 2jvl_A 33 KEVGKAIEQGRQKFEPTMTQAELGKEIG------ETAATVASYERG 72 (107)
T ss_dssp HHHHHHHHHHHTTSSSCCCHHHHHHHHT------CCHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcC
Confidence 568999999999 99999999998876 577899999974
No 115
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=93.62 E-value=0.073 Score=40.21 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=40.0
Q ss_pred HHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhHHH
Q psy6088 158 QFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKPLL 214 (289)
Q Consensus 158 ~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkPLL 214 (289)
.+++.+|..|...|+||.+++..+| .|++||+|+|+= ..+...+.+|--.|
T Consensus 18 ~~g~~l~~~r~~~gltq~~lA~~~g------is~~~is~~e~g~~~~~~~~l~~l~~~l 70 (104)
T 3cec_A 18 HPGEVIADILDDLDINTANFAEILG------VSNQTIQEVINGQRSITVDIAIRLGKAL 70 (104)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHT------SCHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCcCCCHHHHHHHHHHH
Confidence 3567788889999999999999886 578999999973 56777766665444
No 116
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=93.50 E-value=0.057 Score=40.50 Aligned_cols=50 Identities=20% Similarity=0.478 Sum_probs=39.0
Q ss_pred HHHHHhhhhhhcccchhHHhhhhhhccCCCCcchh----hhhhhhc--ccchHHHHhhhHHH
Q psy6088 159 FAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT----ISRFEAL--NLSFKNMCKLKPLL 214 (289)
Q Consensus 159 FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTT----IcRFEaL--qLSfKNmcKLkPLL 214 (289)
|++.+|..|...|+||.+++..+| .|.+| |+++|+= ..+...+.+|--+|
T Consensus 2 ~g~~lk~~R~~~glsq~~lA~~~g------is~~~~~~~is~~E~g~~~p~~~~l~~la~~l 57 (98)
T 3lfp_A 2 LIRRLKDARLRAGISQEKLGVLAG------IDEASASARMNQYEKGKHAPDFEMANRLAKVL 57 (98)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHTT------CCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhC------CCcchhhhHHHHHHCCCCCCCHHHHHHHHHHH
Confidence 567899999999999999999886 57788 9999985 45666655554333
No 117
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=93.49 E-value=0.0079 Score=47.13 Aligned_cols=52 Identities=27% Similarity=0.305 Sum_probs=39.9
Q ss_pred HHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhHHH
Q psy6088 157 EQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKPLL 214 (289)
Q Consensus 157 E~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkPLL 214 (289)
..+++.+|..|...|+||.+++..+| +|++||+|+|+= +.+...+.+|--+|
T Consensus 22 ~~~g~~Lk~~R~~~gltq~elA~~~g------is~~~is~~E~G~~~ps~~~l~~ia~~l 75 (111)
T 3mlf_A 22 SNAMKTLKELRTDYGLTQKELGDLFK------VSSRTIQNMEKDSTNIKDSLLSKYMSAF 75 (111)
T ss_dssp CSSCEEHHHHHHHTTCCHHHHHHHHT------SCHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHCCCCCCCHHHHHHHHHHh
Confidence 45678889999999999999998875 588999999984 45655555554333
No 118
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=93.48 E-value=0.083 Score=43.87 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc---ccchHHHHhhhHHHH
Q psy6088 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL---NLSFKNMCKLKPLLQ 215 (289)
Q Consensus 154 ~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL---qLSfKNmcKLkPLLe 215 (289)
+....|++.+|..|...|+||.+++..+| .|.+||+|+|+= ..+.+.+.||--.|.
T Consensus 6 ~~~~~~g~~l~~~r~~~g~s~~~la~~~g------is~~~ls~~e~g~~~~p~~~~l~~ia~~l~ 64 (198)
T 2bnm_A 6 TASTGFAELLKDRREQVKMDHAALASLLG------ETPETVAAWENGEGGELTLTQLGRIAHVLG 64 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHTTTCTTCBHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 34567999999999999999999998876 578999999984 567777777755553
No 119
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=93.47 E-value=0.029 Score=46.03 Aligned_cols=53 Identities=36% Similarity=0.436 Sum_probs=41.8
Q ss_pred HHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhHHHH
Q psy6088 157 EQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKPLLQ 215 (289)
Q Consensus 157 E~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkPLLe 215 (289)
..|++.+|..|...|+||.+++..+| .|+++|+|+|+= +.++..+.+|-=.|.
T Consensus 67 ~~~g~~L~~~R~~~glTq~elA~~lG------is~s~is~~E~G~~~ps~~~l~~la~~lg 121 (141)
T 3kxa_A 67 KAGGETFVSLRMKKGFTQSELATAAG------LPQPYLSRIENSKQSLQDKTVQKLANALG 121 (141)
T ss_dssp HHSSCCHHHHHHHTTCCHHHHHHHTT------CCHHHHHHHHHTCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 33455667889999999999998876 588999999984 678888777765553
No 120
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=93.39 E-value=0.089 Score=40.21 Aligned_cols=51 Identities=8% Similarity=0.071 Sum_probs=41.1
Q ss_pred HHHHHHhh-hhhhcccchhHHhhhhhhccCCCCcchhhhhhhh--cccchHHHHhhhHHH
Q psy6088 158 QFAKTFKQ-RRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA--LNLSFKNMCKLKPLL 214 (289)
Q Consensus 158 ~FAk~FKq-rRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEa--LqLSfKNmcKLkPLL 214 (289)
.|++.+|. .|...|+||.+++..+| .|++||+|+|+ -..+...+.+|--+|
T Consensus 10 ~~g~~l~~~~r~~~glsq~~lA~~~g------is~~~is~~e~g~~~~~~~~l~~la~~l 63 (113)
T 2eby_A 10 TPGDILLYEYLEPLDLKINELAELLH------VHRNSVSALINNNRKLTTEMAFRLAKVF 63 (113)
T ss_dssp CHHHHHHHHTTTTTTCCHHHHHHHHT------SCHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 37788887 89999999999999886 57899999997 456777777775555
No 121
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=93.09 E-value=0.031 Score=39.21 Aligned_cols=47 Identities=23% Similarity=0.160 Sum_probs=36.3
Q ss_pred HHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhh
Q psy6088 159 FAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLK 211 (289)
Q Consensus 159 FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLk 211 (289)
|++.+|..|...|+||.+++..+| .|++||+|+|+= ..+...+.++-
T Consensus 11 ~~~~l~~~r~~~g~s~~~lA~~~g------is~~~i~~~e~g~~~~~~~~l~~ia 59 (76)
T 3bs3_A 11 MLNRIKVVLAEKQRTNRWLAEQMG------KSENTISRWCSNKSQPSLDMLVKVA 59 (76)
T ss_dssp CCBCHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCCCCHHHHHHHH
Confidence 567788889999999999999886 578999999973 34555544443
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=93.02 E-value=0.089 Score=45.04 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=46.3
Q ss_pred HHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhHHHH---HHHHHhh
Q psy6088 157 EQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKPLLQ---KWLSDAD 222 (289)
Q Consensus 157 E~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkPLLe---kWLeEAE 222 (289)
+.|.+.+|..|...|+||.+++..+ .|++||+|+|+= ..|...+.+|--.|. .||-+.+
T Consensus 4 ~~~g~~i~~~R~~~~~tq~~la~~~-------~s~~~~s~~e~g~~~~~~~~l~~i~~~l~~~~~~~~~~~ 67 (293)
T 3u3w_A 4 EKLGSEIKKIRVLRGLTQKQLSENI-------CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVL 67 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHTTT-------SCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHh-------CCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHhCCC
Confidence 4688999999999999999998764 589999999974 577777777766555 3555443
No 123
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=92.62 E-value=0.12 Score=39.44 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=35.9
Q ss_pred HHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc-ccchHHHHhhhH
Q psy6088 160 AKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL-NLSFKNMCKLKP 212 (289)
Q Consensus 160 Ak~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL-qLSfKNmcKLkP 212 (289)
.+.+|..|...|+||.+++..+| .|++||+|+|+= .+++..+.||--
T Consensus 26 ~~rLk~lR~~~glTq~eLA~~~G------iS~~tis~iE~G~~~s~~~l~kIa~ 73 (88)
T 3t76_A 26 YNKLWKLLIDRDMKKGELREAVG------VSKSTFAKLGKNENVSLTVLLAICE 73 (88)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHT------CCHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCcCHHHHHHHHH
Confidence 35778889999999999999876 578999999973 346555555533
No 124
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=92.58 E-value=0.11 Score=36.62 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=38.0
Q ss_pred HHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhHHH
Q psy6088 160 AKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKPLL 214 (289)
Q Consensus 160 Ak~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkPLL 214 (289)
.+.+|..|...|+||.+++..+| .|.+||+|+|+= ..++..+.+|--+|
T Consensus 10 ~~~l~~~r~~~glsq~~lA~~~g------is~~~is~~e~g~~~~~~~~l~~ia~~l 60 (73)
T 3omt_A 10 FNRLKSVLAEKGKTNLWLTETLD------KNKTTVSKWCTNDVQPSLETLFDIAEAL 60 (73)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHTT------CCHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34577888899999999998876 588999999984 56777766664444
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=92.56 E-value=0.057 Score=46.26 Aligned_cols=47 Identities=23% Similarity=0.313 Sum_probs=37.2
Q ss_pred HHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhh
Q psy6088 157 EQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKL 210 (289)
Q Consensus 157 E~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKL 210 (289)
..|.+.+|..|...|+||.+++..+ .|++||+|+|+= ..|...+.+|
T Consensus 4 ~~~g~~i~~~r~~~~~tq~~la~~~-------~s~~~is~~e~g~~~~~~~~l~~l 52 (293)
T 2qfc_A 4 EKLGSEIKKIRVLRGLTQKQLSENI-------CHQSEVSRIESGAVYPSMDILQGI 52 (293)
T ss_dssp HHHHHHHHHHHHHHTCCTTTTTTTT-------SCHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH-------cCHHHHHHHHCCCCCCCHHHHHHH
Confidence 4689999999999999999988764 489999999973 3455555544
No 126
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=92.48 E-value=0.038 Score=44.49 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=34.2
Q ss_pred HHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhcc
Q psy6088 157 EQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALN 201 (289)
Q Consensus 157 E~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLq 201 (289)
+.|.+.+|..|...|+||.|++..+| .|.++|++.|+=+
T Consensus 2 ~~~G~~lr~~R~~~gltq~elA~~~g------is~~~is~iE~g~ 40 (130)
T 3fym_A 2 KTVGEALKGRRERLGMTLTELEQRTG------IKREMLVHIENNE 40 (130)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHC------CCHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHCCC
Confidence 35788999999999999999999876 4789999999865
No 127
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=92.36 E-value=0.15 Score=36.88 Aligned_cols=62 Identities=16% Similarity=0.240 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc---ccchHHHHhhhHHHH---HHHHHhh
Q psy6088 153 LEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL---NLSFKNMCKLKPLLQ---KWLSDAD 222 (289)
Q Consensus 153 l~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL---qLSfKNmcKLkPLLe---kWLeEAE 222 (289)
.+..+.|++.+|..|... ||.+++..+| +|++||+|+|+= ..+++.+.+|--.|. .||-+.+
T Consensus 11 ~~~~~~~g~~l~~~R~~~--sq~~lA~~~g------is~~~is~~E~g~~~~p~~~~l~~ia~~l~v~~~~l~~~~ 78 (86)
T 2ofy_A 11 LERGQRLGELLRSARGDM--SMVTVAFDAG------ISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVV 78 (86)
T ss_dssp HHHHHHHHHHHHHHHTTS--CHHHHHHHHT------CCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHC--CHHHHHHHhC------CCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHHhccc
Confidence 455677899999998888 9999888775 578999999984 567777777755553 4665443
No 128
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain, transcription; 2.25A {Enterococcus faecalis} SCOP: a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A 2grl_A 2grm_A
Probab=91.67 E-value=0.12 Score=47.08 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=40.8
Q ss_pred HHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhHHHH
Q psy6088 159 FAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKPLLQ 215 (289)
Q Consensus 159 FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkPLLe 215 (289)
+.+.+|..|...|+||.+|+.. . .|++||+|||+= +.|...+.++--.|.
T Consensus 4 ig~~lk~~R~~~gltq~~la~~------~-is~~~is~~E~g~~~~~~~~l~~i~~~l~ 55 (317)
T 2awi_A 4 IGSVLKQIRQELNYHQIDLYSG------I-MSKSVYIKVEADSRPISVEELSKFSERLG 55 (317)
T ss_dssp HHHHHHHHHHHTTCCHHHHHTT------T-SCHHHHHHHHTTCSCCBHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHH------h-cCHHHHHHHHCCCCCCCHHHHHHHHHHcC
Confidence 6789999999999999999864 2 899999999974 677777777755544
No 129
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=91.21 E-value=0.22 Score=42.39 Aligned_cols=51 Identities=20% Similarity=0.323 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhh
Q psy6088 155 ELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLK 211 (289)
Q Consensus 155 ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLk 211 (289)
....|.+.+|..|...|+||.+++..+| .|++||+++|+= ..+.+.+.+|-
T Consensus 14 ~~~~~~~~l~~~r~~~g~t~~~lA~~~g------is~~~i~~~~~g~~~p~~~~l~~ia 66 (236)
T 3bdn_A 14 DARRLKAIYEKKKNELGLSQESVADKMG------MGQSGVGALFNGINALNAYNAALLA 66 (236)
T ss_dssp HHHHHHHHHHHHTTTTTCCSHHHHHHHT------SCHHHHHHHTTTTSCCCHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCCCCHHHHHHHH
Confidence 3457999999999999999999998875 488999999974 45556666653
No 130
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=90.99 E-value=0.26 Score=38.37 Aligned_cols=50 Identities=2% Similarity=0.094 Sum_probs=39.3
Q ss_pred HHHHhh-hhhhcccchhHHhhhhhhccCCCCcchhhhhhhh--cccchHHHHhhhHHHH
Q psy6088 160 AKTFKQ-RRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA--LNLSFKNMCKLKPLLQ 215 (289)
Q Consensus 160 Ak~FKq-rRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEa--LqLSfKNmcKLkPLLe 215 (289)
.+.+|. .|-..|+||.+++..+| +|++||+++|+ -.+|...+.+|--+|.
T Consensus 15 G~~Lk~~lr~~~gltq~eLA~~lG------is~~~is~ie~G~~~~s~~~~~kla~~lg 67 (104)
T 3trb_A 15 GEILAEELGFLDKMSANQLAKHLA------IPTNRVTAILNGARSITADTALRLAKFFG 67 (104)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHT------SCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 456665 58889999999999887 58899999998 3578888888755553
No 131
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=90.63 E-value=0.23 Score=36.64 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=42.7
Q ss_pred HHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc--ccchHHHHhhhHHH----HHHHHHh
Q psy6088 159 FAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMCKLKPLL----QKWLSDA 221 (289)
Q Consensus 159 FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL--qLSfKNmcKLkPLL----ekWLeEA 221 (289)
|++.+|..|...|+||.+++..+| .|.+||++.|+= ..+...+.+|--.| .-||...
T Consensus 9 ~g~~l~~~r~~~gltq~~lA~~~g------is~~~is~~e~g~~~~~~~~~~~i~~~l~v~~~~~l~~~ 71 (94)
T 2ict_A 9 PGDIIQESLDELNVSLREFARAME------IAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQ 71 (94)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHT------CCHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHhC------CCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 567888889999999999999886 577899999863 46666666664444 3487643
No 132
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=90.35 E-value=0.45 Score=38.00 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHhhhh-hhcc-cchhHHhhhhhhccCCCCcchhhhhhhhcccchHHHHhhhHHHHHHHHHh
Q psy6088 151 TDLEELEQFAKTFKQRR-IKLG-FTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLSDA 221 (289)
Q Consensus 151 ~dl~ELE~FAk~FKqrR-IkLG-~TQaDVG~ALg~lyG~~fSQTTIcRFEaLqLSfKNmcKLkPLLekWLeEA 221 (289)
-+.+|.+.++..|.--+ +.-| .||.+|...|| .|.+||+|- + +...++++-+..||+.-
T Consensus 36 LT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lG------iS~stISRi-~-----r~L~~l~~~~k~~l~~~ 96 (101)
T 1jhg_A 36 LTPDEREALGTRVRIIEELLRGEMSQRELKNELG------AGIATITRG-S-----NSLKAAPVELRQWLEEV 96 (101)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHC------CCHHHHHHH-H-----HHHHHSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHC------CChhhhhHH-H-----HHHHHccHHHHHHHHHH
Confidence 34678888888887554 2247 99999998876 478999998 2 57888999999999864
No 133
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=88.90 E-value=0.15 Score=36.73 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=31.0
Q ss_pred HHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhcc-cchHHHHhh
Q psy6088 162 TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALN-LSFKNMCKL 210 (289)
Q Consensus 162 ~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLq-LSfKNmcKL 210 (289)
.+|..|...| ||.+++..+| .|++||+++|+=. .....+.+|
T Consensus 3 ~l~~~r~~~g-sq~~lA~~lg------vs~~~is~~e~g~~~p~~~l~~i 45 (79)
T 3bd1_A 3 AIDIAINKLG-SVSALAASLG------VRQSAISNWRARGRVPAERCIDI 45 (79)
T ss_dssp HHHHHHHHHS-SHHHHHHHHT------CCHHHHHHHHHHTCCCGGGHHHH
T ss_pred HHHHHHHHhC-CHHHHHHHHC------CCHHHHHHHHHCCCCCHHHHHHH
Confidence 4677788899 9999999886 5789999999743 333444443
No 134
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.62 E-value=0.11 Score=42.60 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhc
Q psy6088 159 FAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL 200 (289)
Q Consensus 159 FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL 200 (289)
|++.+|..|...|+||.+++..+| .|.+||+|+|+=
T Consensus 2 ig~~lk~~R~~~gltq~elA~~lg------is~~~vs~~e~G 37 (158)
T 2p5t_A 2 IGKNIKSLRKTHDLTQLEFARIVG------ISRNSLSRYENG 37 (158)
T ss_dssp ------------------------------------------
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHC------cCHHHHHHHHCC
Confidence 577889999999999999998876 567899999863
No 135
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=84.79 E-value=1.2 Score=36.28 Aligned_cols=57 Identities=21% Similarity=0.181 Sum_probs=43.7
Q ss_pred HHHHHHhhhhh------hcccchhHHhhhhhhccCCCCcchhhhhhhh---cccchHHHHhhhHHHH
Q psy6088 158 QFAKTFKQRRI------KLGFTQGDVGLAMGKLYGNDFSQTTISRFEA---LNLSFKNMCKLKPLLQ 215 (289)
Q Consensus 158 ~FAk~FKqrRI------kLG~TQaDVG~ALg~lyG~~fSQTTIcRFEa---LqLSfKNmcKLkPLLe 215 (289)
.|++.++.-|- .-++||.+|+.++|. .|..+|.++|+.+|+ -+-|...+.||--++.
T Consensus 7 ~~~~RL~~L~~~~~~~~~~~~T~~elA~~~~~-~G~~is~s~is~~E~G~r~~Ps~~~l~~iA~~f~ 72 (135)
T 3r1f_A 7 TFAARLNRLFDTVYPPGRGPHTSAEVIAALKA-EGITMSAPYLSQLRSGNRTNPSGATMAALANFFR 72 (135)
T ss_dssp CHHHHHHHHHHHCCCTTSCCCCHHHHHHHHHT-TTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcccCCCCCCHHHHHHHHcc-cCCCcCHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 36666665555 347999999999994 488899999999996 3678877777755554
No 136
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=83.63 E-value=0.65 Score=42.88 Aligned_cols=53 Identities=23% Similarity=0.230 Sum_probs=42.3
Q ss_pred HHHHHHHhhhhhh------cccchhHHhhhhhhccCCCCcchhhhhhhhc---ccchHHHHhhhHHHH
Q psy6088 157 EQFAKTFKQRRIK------LGFTQGDVGLAMGKLYGNDFSQTTISRFEAL---NLSFKNMCKLKPLLQ 215 (289)
Q Consensus 157 E~FAk~FKqrRIk------LG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL---qLSfKNmcKLkPLLe 215 (289)
..|.+.+|..|.. .|+||.+|+..+| .|+++|+|+|.= +.|...+.+|--.|.
T Consensus 5 ~~lG~~Lr~lR~~~~~~~~~gLtqeelA~~~g------vS~~~is~iE~G~~~~ps~~~l~~lA~aL~ 66 (292)
T 3pxp_A 5 AAFGKLVQALRREHRDEKGRVWTQEVLAERTQ------LPKRTIERIENGSLAHLDADILLRLADALE 66 (292)
T ss_dssp HHHHHHHHHHHHTCBCTTSCBCCHHHHHHHHT------CCHHHHHHHHHTCCSCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCccCcCCCCHHHHHHHHC------cCHHHHHHHHCCCCCCCCHHHHHHHHHhcC
Confidence 4688999999999 9999999998876 588999999973 567666666654443
No 137
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=83.25 E-value=0.57 Score=40.54 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=36.9
Q ss_pred CCHHHHHHHHH---------HHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhcc
Q psy6088 151 TDLEELEQFAK---------TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALN 201 (289)
Q Consensus 151 ~dl~ELE~FAk---------~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLq 201 (289)
.+.++|-.-++ .||.-|...|+||.+++..|| +|++||+++|+=.
T Consensus 74 iaPd~LY~~~~~~~~~~s~~~lk~lR~~~glTQ~elA~~LG------vsr~tis~yE~G~ 127 (170)
T 2auw_A 74 FGRDNVYAWAKEQAGEVSHEMFGDWMHRNNLSLTTAAEALG------ISRRMVSYYRTAH 127 (170)
T ss_dssp BCHHHHHHHHHHHTTCCCHHHHHHHHHHTTCCHHHHHHHHT------SCHHHHHHHHTTS
T ss_pred CCHHHHHHhhhhhccCCCcHHHHHHHHHcCCCHHHHHHHhC------CCHHHHHHHHcCC
Confidence 78888765553 478889999999999999886 4789999999853
No 138
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=82.83 E-value=1.3 Score=35.62 Aligned_cols=56 Identities=21% Similarity=0.175 Sum_probs=40.2
Q ss_pred HHHHHHhhhhh------hcccchhHHhhhhhhccCCCCcchhhhhhhh---cccchHHHHhhhHHH
Q psy6088 158 QFAKTFKQRRI------KLGFTQGDVGLAMGKLYGNDFSQTTISRFEA---LNLSFKNMCKLKPLL 214 (289)
Q Consensus 158 ~FAk~FKqrRI------kLG~TQaDVG~ALg~lyG~~fSQTTIcRFEa---LqLSfKNmcKLkPLL 214 (289)
.||+.++.-|- .=++||.+|+.++|. .|..+|.++|+.+|+ -+-|...+.||--++
T Consensus 5 ~~a~RL~~L~~~~~~~~~~~lT~~elA~~~~~-~G~~iS~s~is~iE~G~r~~Ps~~~l~~iA~~f 69 (123)
T 3qwg_A 5 TFAARLNRLFDTVYPPGRGPHTSAEVIAALKA-EGITMSAPYLSQLRSGNRTNPSGATMAALANFF 69 (123)
T ss_dssp CHHHHHHHHHHHSSCTTTCSCCHHHHHHHHHH-TTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhccCCCCCCCHHHHHHHHcc-cCCCcCHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 35555544443 226999999999994 588899999999996 367777766664443
No 139
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=74.24 E-value=0.076 Score=44.22 Aligned_cols=28 Identities=11% Similarity=0.062 Sum_probs=21.5
Q ss_pred ccCCCCccccHHHHHHHHHHHhhCCCCC
Q psy6088 243 RRRKKRTSIETSVRVALEKAFLQNPKPT 270 (289)
Q Consensus 243 RkRRkRTsfs~~Qk~~LEk~F~qnpkPS 270 (289)
..||.||.|+..|+..|+..|..+|||+
T Consensus 135 ~~~rprt~~~~~q~~~l~~~f~~~~~~~ 162 (169)
T 2rgt_A 135 GGSGGGTPMVAASPERHDGGLQANPVEV 162 (169)
T ss_dssp ------EEEECCCCEECCSSCCCCCCCC
T ss_pred CCcCCCCcccHHHHHHHHHHHhCCCCcc
Confidence 4467999999999999999999999997
No 140
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=68.62 E-value=4.2 Score=31.75 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=36.7
Q ss_pred hhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhcc--cchHHHHhhhHHHHHHHHHhhc
Q psy6088 165 QRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALN--LSFKNMCKLKPLLQKWLSDADS 223 (289)
Q Consensus 165 qrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLq--LSfKNmcKLkPLLekWLeEAE~ 223 (289)
.|+|.-|++|.+++...| .||+||+..|+=. .|+. .++--.|.+|..+-..
T Consensus 26 LK~il~GikQ~eLAK~iG------IsqsTLSaIenG~~~PsL~--~kIAk~fg~w~~~~~~ 78 (83)
T 2l1p_A 26 LKDLLKDMNQSSLAKECP------LSQSMISSIVNSTYYANVS--AAKCQEFGRWYKHFKK 78 (83)
T ss_dssp HHHHHTTSCHHHHHHHSS------SCHHHHHHHHTCSSCCCCC--SHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHcC------CCHHHHHHHHcCCCCCCch--HHHHHHHHHHHHHHHH
Confidence 333333999999877754 6899999999744 3444 6777789999987654
No 141
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=63.38 E-value=4.5 Score=33.08 Aligned_cols=58 Identities=5% Similarity=-0.008 Sum_probs=39.2
Q ss_pred HHHHHHHhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhhcccc-hHHHHhhhHHH---HHHHHHhh
Q psy6088 157 EQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLS-FKNMCKLKPLL---QKWLSDAD 222 (289)
Q Consensus 157 E~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLqLS-fKNmcKLkPLL---ekWLeEAE 222 (289)
+.|.+.+|..|-.. ||.+++..+| .|++||++.|+=.-. .+.+.++--.| -.||..-+
T Consensus 8 ~~~~~rl~~~r~~~--tq~elA~~~G------is~~~i~~~e~g~~~p~~~l~~ia~~~~v~~~~l~~g~ 69 (189)
T 2fjr_A 8 VDVLDRICEAYGFS--QKIQLANHFD------IASSSLSNRYTRGAISYDFAAHCALETGANLQWLLTGE 69 (189)
T ss_dssp HHHHHHHHHHHTCS--SHHHHHHHTT------CCHHHHHHHHHSSSCCHHHHHHHHHHHCCCHHHHHHCC
T ss_pred HHHHHHHHHHHhhc--CHHHHHHHhC------cCHHHHHHHHhCCCCCHHHHHHHHHHHCCCHHHHhcCC
Confidence 46778888887655 9999988876 588999999974322 34454554333 35887543
No 142
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=63.01 E-value=4 Score=28.48 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=20.8
Q ss_pred hhcccchhHHhhhhhhccCCCCcchhhhhhh
Q psy6088 168 IKLGFTQGDVGLAMGKLYGNDFSQTTISRFE 198 (289)
Q Consensus 168 IkLG~TQaDVG~ALg~lyG~~fSQTTIcRFE 198 (289)
|..|.||.+++..|| .|++||++.|
T Consensus 7 i~~~~tq~~lA~~lG------vs~~~Vs~we 31 (61)
T 1rzs_A 7 IDHFGTQRAVAKALG------ISDAAVSQWK 31 (61)
T ss_dssp HHHHSSHHHHHHHHT------CCHHHHHHCC
T ss_pred HHHcCCHHHHHHHhC------CCHHHHHHHH
Confidence 344569999999987 5789999999
No 143
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=62.34 E-value=13 Score=29.98 Aligned_cols=85 Identities=20% Similarity=0.180 Sum_probs=53.0
Q ss_pred hhcccchhHHhhhhhhccCCCCcchhhhhhhhcccchHHHHhhhHHHHHHHHHhhcCCCCCCCCCCCCCChhhhcccCCC
Q psy6088 168 IKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKK 247 (289)
Q Consensus 168 IkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLqLSfKNmcKLkPLLekWLeEAE~~~~n~~~l~~~l~~~e~~~RkRRk 247 (289)
..-+.||.||+.=....||...|++||+|.=+ | + +++|+..+.+ ...++|+
T Consensus 27 ~~~~~~q~~la~wa~~~f~~~is~stis~ilk------~----k---~~~l~~~~~~----------------~~~~kr~ 77 (144)
T 1iuf_A 27 LQNRSGQQDLIEWFREKFGKDISQPSVSQILS------S----K---YSYLDNTVEK----------------PWDVKRN 77 (144)
T ss_dssp SSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHH------H----H---HHHTTTSCSS----------------SSSSSCC
T ss_pred hCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHh------h----H---HHHhhhcccc----------------cccccCC
Confidence 45678999998855667866689999998632 2 1 2233322210 0123446
Q ss_pred CccccHHHHHHHHHHHhh---CCCCCHHHHHHHHhhc
Q psy6088 248 RTSIETSVRVALEKAFLQ---NPKPTSEEISVLADNL 281 (289)
Q Consensus 248 RTsfs~~Qk~~LEk~F~q---npkPS~~Ei~~LA~~L 281 (289)
|.+-.++.-.+|-.+|.. +...|...|.+=|..+
T Consensus 78 r~~~~~~le~~L~~Wi~~~~~~~~it~~~I~~kA~~i 114 (144)
T 1iuf_A 78 RPPKYPLLEAALFEWQVQQGDDATLSGETIKRAAAIL 114 (144)
T ss_dssp CCCSCHHHHHHHHHHHHHTCTTCCCSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 777777888888888877 4446777766555543
No 144
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=57.45 E-value=2 Score=33.75 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=21.5
Q ss_pred cccchhHHhhhhhhccCCCCcchhhhhhhhc
Q psy6088 170 LGFTQGDVGLAMGKLYGNDFSQTTISRFEAL 200 (289)
Q Consensus 170 LG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL 200 (289)
.|+||.+++..+| .|++||+++|+=
T Consensus 4 ~glTQ~eLA~~~G------vs~~~is~~E~G 28 (122)
T 1nr3_A 4 RGWSQKKIARELK------TTRQNVSAIERK 28 (122)
T ss_dssp CSCSSCSTHHHHH------HCCSSSCCHHHH
T ss_pred cCCCHHHHHHHhC------CCHHHHHHHHcC
Confidence 7999999999987 467899999974
No 145
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=57.26 E-value=7.9 Score=32.22 Aligned_cols=37 Identities=11% Similarity=0.290 Sum_probs=30.5
Q ss_pred HHHHHHHhhhhhhccc--chhHHhhhhhhccCCCCc-chhhhhhhh
Q psy6088 157 EQFAKTFKQRRIKLGF--TQGDVGLAMGKLYGNDFS-QTTISRFEA 199 (289)
Q Consensus 157 E~FAk~FKqrRIkLG~--TQaDVG~ALg~lyG~~fS-QTTIcRFEa 199 (289)
..|.+.+|..|-..|+ ||.+++..+| +| ++||.+.|.
T Consensus 9 ~~i~~~i~~~~~~~g~~ps~~elA~~lg------iss~~tv~~~~~ 48 (202)
T 1jhf_A 9 QEVFDLIRDHISQTGMPPTRAEIAQRLG------FRSPNAAEEHLK 48 (202)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHTT------CSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHhC------CCChHHHHHHHH
Confidence 4678888888889999 9999998886 45 788988765
No 146
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=57.10 E-value=5.5 Score=27.13 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=23.8
Q ss_pred HhhhhhhcccchhHHhhhhhhccCCCCcchhhhhhh
Q psy6088 163 FKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE 198 (289)
Q Consensus 163 FKqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFE 198 (289)
++..|...| |+.+++..|| .||++|++.|
T Consensus 6 l~~~~~~~g-s~~~~A~~lg------is~~~vs~~~ 34 (67)
T 2pij_A 6 LSKYLEEHG-TQSALAAALG------VNQSAISQMV 34 (67)
T ss_dssp HHHHHHHTC-CHHHHHHHHT------SCHHHHHHHH
T ss_pred HHHHHHHcC-CHHHHHHHHC------cCHHHHHHHH
Confidence 455677889 9999988875 6789999998
No 147
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=56.73 E-value=5.4 Score=31.46 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=28.5
Q ss_pred ccchhHHhhhhhhccCCCCcchhhhhhhhcccchHHHHhhhHHH
Q psy6088 171 GFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLL 214 (289)
Q Consensus 171 G~TQaDVG~ALg~lyG~~fSQTTIcRFEaLqLSfKNmcKLkPLL 214 (289)
+.+|.+|..++|.- .+||+|++. . -+..+|++.-+|
T Consensus 23 ~~gq~~vA~~iGV~------~StISR~k~-~-~~~~~~~lLa~l 58 (97)
T 1xwr_A 23 MLGTEKTAEAVGVD------KSQISRWKR-D-WIPKFSMLLAVL 58 (97)
T ss_dssp HHCHHHHHHHHTCC------TTTHHHHHH-H-HHHHHHHHHHHH
T ss_pred HHhHHHHHHHhCCC------HHHHHHHHh-h-hHHHHHHHHHHH
Confidence 78999999998865 589999887 2 246788887776
No 148
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=52.87 E-value=8 Score=28.25 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=23.3
Q ss_pred hhhhhhcccchhHHhhhhhhccCCCCcchhhhhhhh
Q psy6088 164 KQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA 199 (289)
Q Consensus 164 KqrRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEa 199 (289)
|..|-+-|+||.+++..+| +|.+||++.|.
T Consensus 15 ~~~l~~~glT~~~LA~~~G------vs~stls~~~~ 44 (74)
T 1neq_A 15 IAGLKKRKLSLSALSRQFG------YAPTTLANALE 44 (74)
T ss_dssp HHHHHTTSCCHHHHHHHHS------SCHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHC------cCHHHHHHHHc
Confidence 3334467999999988876 57899999877
No 149
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=50.10 E-value=9.5 Score=29.50 Aligned_cols=40 Identities=20% Similarity=0.401 Sum_probs=29.9
Q ss_pred hhhhcccchhHHhhhhhhccCCCCcchhhhhhhhcccchHHHHhhhHHH
Q psy6088 166 RRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLL 214 (289)
Q Consensus 166 rRIkLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLqLSfKNmcKLkPLL 214 (289)
.||.. ++|.+|..++| .+.+||+|+.. +. |.+||+|--+|
T Consensus 20 ~~La~-~gQ~~vAe~~G------vdeStISR~k~-~~-~~~~~~lLa~L 59 (83)
T 1zs4_A 20 NKIAM-LGTEKTAEAVG------VDKSQISRWKR-DW-IPKFSMLLAVL 59 (83)
T ss_dssp HHHHH-HCHHHHHHHHT------SCHHHHHHHHH-HT-HHHHHHHHHHH
T ss_pred HHHHH-HhhHHHHHHhC------CCHHHHhhhhh-hH-HHHHHHHHHHh
Confidence 34444 78999999887 46799999877 22 56888887776
No 150
>4e1p_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 1.73A {Mycobacterium tuberculosis}
Probab=49.95 E-value=9.1 Score=28.14 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.6
Q ss_pred cccchHHHHhhhHHHHHHHHHhhc
Q psy6088 200 LNLSFKNMCKLKPLLQKWLSDADS 223 (289)
Q Consensus 200 LqLSfKNmcKLkPLLekWLeEAE~ 223 (289)
++||-+|+-||+-.|..|++-+-+
T Consensus 34 IDLs~~nA~~lr~~L~~yi~~arr 57 (61)
T 4e1p_A 34 IDLSTKNATKLRGDLKQWVAAGRR 57 (61)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSEE
T ss_pred EECCHHHHHHHHHHHHHHHHhhee
Confidence 899999999999999999986644
No 151
>4e1r_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 2.04A {Mycobacterium tuberculosis}
Probab=40.55 E-value=15 Score=28.83 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.6
Q ss_pred cccchHHHHhhhHHHHHHHHHhhc
Q psy6088 200 LNLSFKNMCKLKPLLQKWLSDADS 223 (289)
Q Consensus 200 LqLSfKNmcKLkPLLekWLeEAE~ 223 (289)
+|||-+|+-||+-.|..|++-+-+
T Consensus 59 IDLS~~NA~kLR~aLapyI~aaRR 82 (86)
T 4e1r_A 59 IDLSTKNATKLRGDLKQWVAAGRR 82 (86)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSEE
T ss_pred EECCHHHHHHHHHHHHHHHHhhee
Confidence 799999999999999999986654
No 152
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=39.68 E-value=40 Score=27.04 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=32.2
Q ss_pred CCCCccccHHHHHHHHHHH-hhCCCCCHHHHHHHH-hhc--CCCcc
Q psy6088 245 RKKRTSIETSVRVALEKAF-LQNPKPTSEEISVLA-DNL--CMNIS 286 (289)
Q Consensus 245 RRkRTsfs~~Qk~~LEk~F-~qnpkPS~~Ei~~LA-~~L--~Leke 286 (289)
+|+|++++..++..+-.++ ..++..+-.++..=| +.+ +++..
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~s 51 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQP 51 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSS
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHH
Confidence 5689999999999999999 889999987765532 255 44443
No 153
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=36.62 E-value=27 Score=27.92 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHhhhhhhcccchhHHhhhhhhccCCC
Q psy6088 150 TTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGND 188 (289)
Q Consensus 150 ~~dl~ELE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~ 188 (289)
.-+..|+.+||..+++.|. |..-.+.+.-|-.|||..
T Consensus 28 ~L~~~ElqqFA~Llr~YR~--G~~I~~Fc~kLl~LyG~~ 64 (98)
T 4fqn_A 28 KLSSQEIQQFAALLHEYRN--GASIHEFCINLRQLYGDS 64 (98)
T ss_dssp TSCHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHCGG
T ss_pred hcChHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHhchH
Confidence 4567999999999999887 567889999999999964
No 154
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.29 E-value=13 Score=28.07 Aligned_cols=38 Identities=11% Similarity=0.088 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCccccC
Q psy6088 252 ETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289 (289)
Q Consensus 252 s~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVVR 289 (289)
.+.-+..|+.||.......-+++..|..+.+|+-+.||
T Consensus 14 ~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvk 51 (70)
T 2ys9_A 14 PPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVL 51 (70)
T ss_dssp CCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHH
T ss_pred CCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHH
Confidence 33456789999999999999999999999999876653
No 155
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=32.96 E-value=13 Score=25.33 Aligned_cols=40 Identities=5% Similarity=0.098 Sum_probs=26.4
Q ss_pred CccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCcccc
Q psy6088 248 RTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 248 RTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVV 288 (289)
|..|+.+.+.....++... ++....+.++|.++|+....|
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl 42 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQI 42 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHH
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHH
Confidence 4468888888775555433 332234779999999976543
No 156
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=32.42 E-value=18 Score=30.28 Aligned_cols=27 Identities=26% Similarity=0.191 Sum_probs=20.3
Q ss_pred cchhHHhhhhhhccCCCCcchhhhhhhh
Q psy6088 172 FTQGDVGLAMGKLYGNDFSQTTISRFEA 199 (289)
Q Consensus 172 ~TQaDVG~ALg~lyG~~fSQTTIcRFEa 199 (289)
.||.+....|... |...||.||+|+=+
T Consensus 20 ~tq~eL~~~L~~~-G~~VtqaTisRDL~ 46 (149)
T 1b4a_A 20 ETQDELVDRLREA-GFNVTQATVSRDIK 46 (149)
T ss_dssp CSHHHHHHHHHHT-TCCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHc-CCCcCHHHHHHHHH
Confidence 4788888887655 77888888888644
No 157
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=30.56 E-value=32 Score=29.92 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhhhhcccchhHHhhhhhhccCCCC-cchhhhh
Q psy6088 156 LEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDF-SQTTISR 196 (289)
Q Consensus 156 LE~FAk~FKqrRIkLG~TQaDVG~ALg~lyG~~f-SQTTIcR 196 (289)
++.+-+-.+.+.|. ||.++-..|... |... +|.||||
T Consensus 35 ~~~I~eiI~~~~I~---TQeEL~~~L~~~-Gi~viTQATvSR 72 (180)
T 3v4g_A 35 VRAFKALLKEERFG---SQGEIVEALKQE-GFENINQSKVSR 72 (180)
T ss_dssp HHHHHHHHHHTCCC---SHHHHHHHHHHT-TCTTCCHHHHHH
T ss_pred HHHHHHHHhhCCcC---CHHHHHHHHHHC-CCcccCHHHHHH
Confidence 34444555777776 999999999877 8887 9999998
No 158
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=25.44 E-value=52 Score=26.49 Aligned_cols=40 Identities=28% Similarity=0.310 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHhhhhh-hcccchhHHhhhhhhccCCCCcchhhhh
Q psy6088 151 TDLEELEQFAKTFKQRRI-KLGFTQGDVGLAMGKLYGNDFSQTTISR 196 (289)
Q Consensus 151 ~dl~ELE~FAk~FKqrRI-kLG~TQaDVG~ALg~lyG~~fSQTTIcR 196 (289)
-.++|++.+|..++-.+. .=|.|+.++...+| .|-+||+|
T Consensus 37 ~T~~E~~alaqR~~Ia~lL~~G~SyreIa~~tG------~StaTIsR 77 (107)
T 3frw_A 37 CTINELLSLSQRFEVAKMLTDKRTYLDISEKTG------ASTATISR 77 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHC------CCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHC------ccHHHHHH
Confidence 346899999999976655 34999999977765 35689999
No 159
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=24.40 E-value=65 Score=22.87 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=14.9
Q ss_pred chhHHhhhhhhccCCCCcchhhhhhhh
Q psy6088 173 TQGDVGLAMGKLYGNDFSQTTISRFEA 199 (289)
Q Consensus 173 TQaDVG~ALg~lyG~~fSQTTIcRFEa 199 (289)
|+.||...+| +|.+||+|+.+
T Consensus 2 T~~diA~~aG------VS~sTVSrvLn 22 (65)
T 1uxc_A 2 KLDEIARLAG------VSRTTASYVIN 22 (65)
T ss_dssp CHHHHHHHHT------SCHHHHHHHHH
T ss_pred CHHHHHHHHC------cCHHHHHHHHc
Confidence 6677776654 57788888875
No 160
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=24.18 E-value=43 Score=24.43 Aligned_cols=40 Identities=8% Similarity=0.093 Sum_probs=25.9
Q ss_pred cCCCCccccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCCCcccc
Q psy6088 244 RRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMNISLT 288 (289)
Q Consensus 244 kRRkRTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~LekeVV 288 (289)
+|++|..++.+.+...-+.+... . + +.+||+.+|+.+..|
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~g-~-s---~~~iA~~~gIs~sTl 55 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHDG-E-S---KASVARDIGVPESTL 55 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHT-C-C---HHHHHHHHTCCHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC-C-C---HHHHHHHHCcCHHHH
Confidence 34456688888876555555432 2 2 667899999976543
No 161
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=24.14 E-value=32 Score=33.67 Aligned_cols=33 Identities=12% Similarity=0.017 Sum_probs=28.5
Q ss_pred hcccchhHHhhhhhhccCCCCcchhhhhhhhcc
Q psy6088 169 KLGFTQGDVGLAMGKLYGNDFSQTTISRFEALN 201 (289)
Q Consensus 169 kLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLq 201 (289)
.-.|||.++...|+...+..+|-.||.|||+=.
T Consensus 27 ~~~~~~~~~a~~l~~~~~~~~~~~~~~rw~~~~ 59 (482)
T 3me5_A 27 LQIYDVKMLVAQLNGVGENHWSAAILKRALAND 59 (482)
T ss_dssp HTTSCHHHHHHHHHHTCSSCCCHHHHHHHHC--
T ss_pred HHHcCHHHHHHHHHhhccCCCCHHHHHHHHcCC
Confidence 336999999999999999999999999999863
No 162
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=22.82 E-value=2e+02 Score=22.18 Aligned_cols=29 Identities=21% Similarity=0.046 Sum_probs=22.6
Q ss_pred CccccHHHHHHHHHHHhhCCCCCHHHHHH
Q psy6088 248 RTSIETSVRVALEKAFLQNPKPTSEEISV 276 (289)
Q Consensus 248 RTsfs~~Qk~~LEk~F~qnpkPS~~Ei~~ 276 (289)
+..++.+.+..+......++.-+..+|..
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~ 116 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFAWEIRD 116 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCcchhHHHHHH
Confidence 34678888899999998888888776644
No 163
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=22.53 E-value=53 Score=25.94 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHhhhhhhcc
Q psy6088 150 TTDLEELEQFAKTFKQRRIKLG 171 (289)
Q Consensus 150 ~~dl~ELE~FAk~FKqrRIkLG 171 (289)
-.|++|++.||+.+++-+=.|+
T Consensus 5 ~~dpeElr~Fa~~L~~F~d~Lq 26 (94)
T 3fx7_A 5 QMDTEEVREFVGHLERFKELLR 26 (94)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999998876653
No 164
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=22.44 E-value=33 Score=29.37 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=14.2
Q ss_pred chhHHhhhhhhccCCCCcchhhhh
Q psy6088 173 TQGDVGLAMGKLYGNDFSQTTISR 196 (289)
Q Consensus 173 TQaDVG~ALg~lyG~~fSQTTIcR 196 (289)
||.++-..|... |...+|.||||
T Consensus 36 tQeEL~~~L~~~-Gi~vTQATlSR 58 (170)
T 3lap_A 36 SQNELAALLAAE-GIEVTQATLSR 58 (170)
T ss_dssp SHHHHHHHHHHT-TCCCCHHHHHH
T ss_pred CHHHHHHHHHHc-CCCcCchhHHH
Confidence 666666666554 66666666665
No 165
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=21.50 E-value=73 Score=27.10 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=18.1
Q ss_pred cccchhHHhhhhhhccCCCCcchhhhhhhhc
Q psy6088 170 LGFTQGDVGLAMGKLYGNDFSQTTISRFEAL 200 (289)
Q Consensus 170 LG~TQaDVG~ALg~lyG~~fSQTTIcRFEaL 200 (289)
.|+|+.+|+..+|+ |.++|+|+=+|
T Consensus 51 ~G~t~eeiA~~lG~------s~s~V~~~LrL 75 (178)
T 1r71_A 51 KGKKKGDIAKEIGK------SPAFITQHVTL 75 (178)
T ss_dssp TTCCHHHHHHHHTC------CHHHHHHHHGG
T ss_pred cCCCHHHHHHHHCc------CHHHHHHHHHH
Confidence 39999999988773 56677765443
No 166
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=20.73 E-value=1.4e+02 Score=25.89 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=28.5
Q ss_pred hcccchhHHhhhhhhccCCCCcchhhhhhhhcccchHHHHhhhHHHHHHHHH
Q psy6088 169 KLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLSD 220 (289)
Q Consensus 169 kLG~TQaDVG~ALg~lyG~~fSQTTIcRFEaLqLSfKNmcKLkPLLekWLeE 220 (289)
..|+|+.+|+..+| .|.++|.|.-+|- +|-|-+...+.+
T Consensus 132 ~~g~t~~~iA~~lG------~s~~~V~~~l~l~-------~l~~~v~~~l~~ 170 (230)
T 1vz0_A 132 EMGLTQEEVARRVG------KARSTVANALRLL-------QLPPEALEALER 170 (230)
T ss_dssp HTTCCHHHHHHHHT------CCHHHHHHHHHGG-------GSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHC------cCHHHHHHHHHHH-------cCCHHHHHHHHc
Confidence 67999999988876 4788998877662 455666666654
No 167
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=20.15 E-value=1.9e+02 Score=20.87 Aligned_cols=34 Identities=15% Similarity=-0.050 Sum_probs=23.3
Q ss_pred cccHHHHHHHHHHHhhCCCCCHHHHHHHHhhcCC
Q psy6088 250 SIETSVRVALEKAFLQNPKPTSEEISVLADNLCM 283 (289)
Q Consensus 250 sfs~~Qk~~LEk~F~qnpkPS~~Ei~~LA~~L~L 283 (289)
.++++.+..+.+....+|.-+..+|...-.+.|+
T Consensus 75 ~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~ 108 (128)
T 1pdn_C 75 IATPEIENRIEEYKRSSPGMFSWEIREKLIREGV 108 (128)
T ss_dssp SSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSS
T ss_pred cCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCC
Confidence 5667778888888888888887776543322265
Done!