RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6088
(289 letters)
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 169 bits (430), Expect = 4e-53
Identities = 100/140 (71%), Positives = 120/140 (85%), Gaps = 4/140 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
+E +DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM
Sbjct: 1 EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 60
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTPEA----IGRRRKKRTSIETSVRVALEKAF 263
KLKPLL+KWL+DA++ ++ S LS+P + RRRKKRTSIET++RVALEK+F
Sbjct: 61 SKLKPLLEKWLNDAEANLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSF 120
Query: 264 LQNPKPTSEEISVLADNLCM 283
++N KPTSE+I+++A+ L M
Sbjct: 121 MENQKPTSEDITLIAEQLNM 140
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 160 bits (407), Expect = 1e-49
Identities = 85/138 (61%), Positives = 103/138 (74%), Gaps = 4/138 (2%)
Query: 147 PDETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKN 206
++ ++LEQFAK FKQRRIKLGFTQ DVGLA+G LYGN FSQTTI RFEAL LSFKN
Sbjct: 6 DEDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKN 65
Query: 207 MCKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQN 266
MCKLKPLL KWL + DS++ +P+ L A GR+RKKRTSIE V+ ALE FL+
Sbjct: 66 MCKLKPLLNKWLEETDSSSGSPTNLDK----IAAQGRKRKKRTSIEVGVKGALESHFLKC 121
Query: 267 PKPTSEEISVLADNLCMN 284
PKP++ EI+ LAD+L +
Sbjct: 122 PKPSAHEITGLADSLQLE 139
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 153 bits (387), Expect = 1e-46
Identities = 52/132 (39%), Positives = 76/132 (57%), Gaps = 1/132 (0%)
Query: 152 DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLK 211
++EE+ +FAK FK RR+ LG TQ VG AM G +SQ+ ISRFE L+++ K+ KLK
Sbjct: 2 NMEEIREFAKNFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDITPKSAQKLK 61
Query: 212 PLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTS 271
P+L+KWL++A+ + ++RK+RTS AL F +NP PT
Sbjct: 62 PVLEKWLNEAELRNQEGQQ-NLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTG 120
Query: 272 EEISVLADNLCM 283
+EI+ +A L
Sbjct: 121 QEITEMAKELNY 132
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 150 bits (381), Expect = 7e-46
Identities = 61/132 (46%), Positives = 86/132 (65%), Gaps = 6/132 (4%)
Query: 153 LEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKP 212
+ LEQFA FK RRIKLG+TQ +VG A+ ++G++FSQTTI RFE L LSFKN CKLK
Sbjct: 2 MRALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKA 61
Query: 213 LLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSE 272
+L KWL +A+ A + R+RK+RT+I + + ALE+ F ++ KP+S+
Sbjct: 62 ILSKWLEEAEQVGALYNEKVGA------NERKRKRRTTISIAAKDALERHFGEHSKPSSQ 115
Query: 273 EISVLADNLCMN 284
EI +A+ L +
Sbjct: 116 EIMRMAEELNLE 127
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 143 bits (361), Expect = 8e-43
Identities = 68/136 (50%), Positives = 92/136 (67%), Gaps = 4/136 (2%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
D +ELEQFAK KQ+RI LG+TQ DVGL +G L+G FSQTTISRFEAL LS KNM
Sbjct: 4 DMKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQLSLKNM 63
Query: 208 CKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNP 267
KL+PLL+KW+ +AD+ + + R++KRTSIE VR +LE FL++P
Sbjct: 64 SKLRPLLEKWVEEADNNENLQEISKS----ETLVQARKRKRTSIENRVRWSLETMFLKSP 119
Query: 268 KPTSEEISVLADNLCM 283
KP+ ++I+ +A+ L +
Sbjct: 120 KPSLQQITHIANQLGL 135
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 1e-06
Identities = 49/270 (18%), Positives = 85/270 (31%), Gaps = 80/270 (29%)
Query: 24 NLSSLSPSELS--TLQQTLQ--QHQHSLQAQLQ-QFV-LFQSASQQNASSSAANSPTGLP 77
+ S P LS +L+ L + +QLQ QF + ++ A+ +P L
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL- 60
Query: 78 PQAQF--FLQNQVQQAVAQAAQQLQQLQKQSHHHHQKLSPQSQQSGNTTPPSSNIRVPAH 135
+F ++ + V+ + Q+ L + L GN +I
Sbjct: 61 -VGKFLGYVSSLVEPSKVGQFDQVLNLCLT-EFENCYLE------GN------DI----- 101
Query: 136 HIKQTPARLLDPDETTDLEELEQFAKTFKQRRIKLG-----------FTQGDVGLAMGKL 184
H A L + T L + ++ K + RI F G A +L
Sbjct: 102 H---ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA--QL 156
Query: 185 Y------GN--------------------DFSQTTISRFEALNLSFKNMCKLKPL---LQ 215
GN D + + L + + K+ +
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 216 KWLSDADSTTANPSC---LSNPLTTPEAIG 242
+WL + +T P LS P++ P IG
Sbjct: 217 EWLENPSNT---PDKDYLLSIPISCP-LIG 242
Score = 33.9 bits (77), Expect = 0.067
Identities = 35/207 (16%), Positives = 66/207 (31%), Gaps = 49/207 (23%)
Query: 2 GASPNASQLLLQNHQLASLPLPNLSSL------------SPSELSTLQQTLQQHQHSLQA 49
+P+ LL S PL + L +P EL + + H L
Sbjct: 223 SNTPDKDYLL---SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 50 QLQQFVLFQSASQQNASSSAANSPTGLPPQAQFFLQNQVQQAVAQAAQQLQQLQKQSHHH 109
+ + ++ S ++ S + T L FF+ + +A + L+ ++
Sbjct: 280 AV---AIAETDSWESFFVSVRKAITVL-----FFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 110 HQKLSP--------QSQ-----QSGNTT-PPSSNIRV-----PAHHIKQTPARLLDPDET 150
SP Q Q N+ P + + + + P + L
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 151 TDLEE------LEQFAKTFKQRRIKLG 171
T L + L+Q F +R++K
Sbjct: 392 T-LRKAKAPSGLDQSRIPFSERKLKFS 417
Score = 28.1 bits (62), Expect = 4.6
Identities = 21/155 (13%), Positives = 41/155 (26%), Gaps = 66/155 (42%)
Query: 45 HSL--------QAQLQQF-----VLF------QSASQQNASSSAANSPTGLPPQ--AQFF 83
HSL A + V+F Q A ++ + + P A F
Sbjct: 1762 HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 84 LQNQVQQAVAQAAQQLQQLQKQSHHHHQKLSP-----QSQQ---SGNTTPPSSNIRVPAH 135
Q +Q V + ++ L + ++QQ +G
Sbjct: 1822 SQEALQYVVERVGKRTGWL----------VEIVNYNVENQQYVAAG-------------- 1857
Query: 136 HIKQTPARLLDPDETTDLEELEQFAKTFKQRRIKL 170
+ L+ + K ++I +
Sbjct: 1858 -------------DLRALDTVTNVLNFIKLQKIDI 1879
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 2e-06
Identities = 38/216 (17%), Positives = 66/216 (30%), Gaps = 54/216 (25%)
Query: 99 LQQLQKQSHHHHQKLSPQSQQSGNTTPPSSNIRVPAHHIKQTPAR----------LLDPD 148
L+ LQK + + +S SSNI++ H I+ R LL
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDH-------SSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 149 ETTDLEELEQF---AKTFKQRRIKLGFTQGDVGLAMGKLYGNDF---SQTTISRFEALNL 202
+ + F K L T + DF + TT + ++
Sbjct: 252 NVQNAKAWNAFNLSCKI-------L-LTTRFKQVT-------DFLSAATTTHISLDHHSM 296
Query: 203 SFKNMCKLKPLLQKWLSDADSTTANPSCLSNPLTTPEAIGRR-RKKRTSIETSVRVALEK 261
+ ++K LL K+L +NP I R + + V +K
Sbjct: 297 TL-TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATWDNWKHVNCDK 354
Query: 262 ------AFLQNPKPTS-----EEISVLADNLCMNIS 286
+ L +P + +SV + +I
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--HIP 388
Score = 41.4 bits (96), Expect = 3e-04
Identities = 25/206 (12%), Positives = 60/206 (29%), Gaps = 53/206 (25%)
Query: 107 HHHHQKLSPQSQQSGNTTPPSSNIRVPAHHIKQTPARLLDP-DETTDLEELEQFAKT-FK 164
HHHH Q + K + D + D ++++ K+
Sbjct: 3 HHHHMDFETGEHQ---------------YQYKDILSVFEDAFVDNFDCKDVQDMPKSILS 47
Query: 165 QRRIKLGFTQGDVGLAMGKLYG--NDFSQTTISRF--EALNL-------SFKNMCKLKPL 213
+ I D +L+ + + +F E L + K + +
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 214 LQKWLSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEE 273
+ + + N N + + R + L +A L +P ++
Sbjct: 108 MTRMYIEQRDRLYN----DNQVFAKYNVSRLQPYL---------KLRQA-LLELRP-AKN 152
Query: 274 I----------SVLADNLCMNISLTE 289
+ + +A ++C++ +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQC 178
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 41.4 bits (96), Expect = 1e-04
Identities = 24/154 (15%), Positives = 46/154 (29%), Gaps = 16/154 (10%)
Query: 146 DPDETTDLEELEQ-----FAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL 200
+ +E L Q AK K + Q +V G +Q+ +S+
Sbjct: 13 AAHQKAVVETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGL------NQSHLSQHLNK 66
Query: 201 NLSFKNMCK---LKPLLQKWLSDADSTTANPSC--LSNPLTTPEAIGRRRKKRTSIETSV 255
K + ++K A T + P + R+ R +
Sbjct: 67 GTPMKTQKRAALYTWYVRKQREVAQQFTHAGQGGLIEEPTGDELPTKKGRRNRFKWGPAS 126
Query: 256 RVALEKAFLQNPKPTSEEISVLADNLCMNISLTE 289
+ L +A+ + P+ EE L + +
Sbjct: 127 QQILFQAYERQKNPSKEERETLVEECNRAECIQR 160
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 41.7 bits (97), Expect = 2e-04
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 155 ELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLL 214
+ E+ K+ R+ G TQ L N Q+ +SR E + +M L+ +
Sbjct: 2 QAEKLGSEIKKIRVLRGLTQKQ-------LSENICHQSEVSRIE-SGAVYPSMDILQGIA 53
Query: 215 QKWLSD 220
K
Sbjct: 54 AKLQIP 59
>4ghj_A Probable transcriptional regulator; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE; 1.75A {Vibrio vulnificus}
Length = 101
Score = 39.2 bits (91), Expect = 2e-04
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 6/63 (9%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
T E+ KQ R+ TQ +V G ++ T+ E + M
Sbjct: 26 KHVTAAALAEEIGDRLKQARLNRDLTQSEVAEIAG------IARKTVLNAEKGKVQLDIM 79
Query: 208 CKL 210
+
Sbjct: 80 IAI 82
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain,
transcription; 2.25A {Enterococcus faecalis} SCOP:
a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A
2grl_A 2grm_A
Length = 317
Score = 37.3 bits (86), Expect = 0.004
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 156 LEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA--LNLSFKNMCKL 210
+ + KQ R +L + Q D+ Y S++ + EA +S + + K
Sbjct: 1 MFKIGSVLKQIRQELNYHQIDL-------YSGIMSKSVYIKVEADSRPISVEELSKF 50
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein,
xenobiotic response E family of transcriptional
regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae
PV}
Length = 83
Score = 34.3 bits (79), Expect = 0.005
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE 198
+ + R G TQ ++ +G+ Q+ +S+ E
Sbjct: 10 ARYQALLDLLLEARSAAGITQKELAARLGR------PQSFVSKTE 48
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional
regulator, transcription regulator; 1.69A {Aeromonas
hydrophila} SCOP: a.35.1.3
Length = 74
Score = 33.8 bits (78), Expect = 0.008
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 147 PDETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA--LNLSF 204
+L +F + ++ R G +Q + G ++ + E N+S
Sbjct: 2 QSHHDHYADLVKFGQRLRELRTAKGLSQETLAFLSG------LDRSYVGGVERGQRNVSL 55
Query: 205 KNMCKL 210
N+ KL
Sbjct: 56 VNILKL 61
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus
caldolyticus} SCOP: a.35.1.3
Length = 77
Score = 33.4 bits (77), Expect = 0.010
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 151 TDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE--ALNLSFKNMC 208
++E +F +T K+ R + G +Q ++ G +T IS E N+S N+
Sbjct: 3 NEIEIKRKFGRTLKKIRTQKGVSQEELADLAG------LHRTYISEVERGDRNISLINIH 56
Query: 209 KL 210
K+
Sbjct: 57 KI 58
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix,
restriction- modification, transcription regulator;
2.80A {Enterobacter SP} PDB: 3fya_A
Length = 99
Score = 33.5 bits (77), Expect = 0.014
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 134 AHHIKQTPARLLDPDETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTT 193
+HH + L+ + L + + K+ R++ G TQ D+ +T
Sbjct: 4 SHHHHHHSSGLVPRGSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSN------LDRTY 57
Query: 194 ISRFE--ALNLSFKNMCKL 210
IS E + NL+ K++ +
Sbjct: 58 ISGIERNSRNLTIKSLELI 76
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 32.7 bits (75), Expect = 0.016
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLAD 279
++ RT I L + F N P+ E+I +AD
Sbjct: 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMAD 42
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA
binding protein, transcription regulator; HET: CME;
1.95A {Enterobacteria phage P2}
Length = 84
Score = 32.5 bits (74), Expect = 0.027
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE 198
+ + R + +Q ++ + +G SQ+ IS+ E
Sbjct: 6 HRYRCLVQLLTKLRKEASLSQSELAIFLGL------SQSDISKIE 44
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET:
DNA; 2.10A {Enterobacter SP} PDB: 3clc_A*
Length = 82
Score = 32.3 bits (74), Expect = 0.031
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 156 LEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE--ALNLSFKNMCKL 210
L + + K+ R++ G TQ D+ +T IS E + NL+ K++ +
Sbjct: 9 LSKVSFVIKKIRLEKGMTQEDLAYKSN------LDRTYISGIERNSRNLTIKSLELI 59
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription
factor, DNA binding protein; 1.88A {Neisseria
meningitidis}
Length = 114
Score = 32.9 bits (75), Expect = 0.035
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 140 TPARLLDPDETTDLEEL-EQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE 198
+L P E D ++L A + R+ G++Q ++ G +T +S E
Sbjct: 2 MGNKLTLPAELPDEQDLRAVLAYNMRLFRVNKGWSQEELARQCG------LDRTYVSAVE 55
Query: 199 --ALNLSFKNMCKL 210
N++ N+ K+
Sbjct: 56 RKRWNIALSNIEKM 69
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 32.5 bits (73), Expect = 0.068
Identities = 19/135 (14%), Positives = 38/135 (28%), Gaps = 13/135 (9%)
Query: 160 AKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPL---LQK 216
A+ + Q + SQ T+S + + + + K
Sbjct: 10 AQRITTELKRYSIPQAIFAQRVLCR-----SQGTLSDLLRNPKPWSKLKSGRETFRRMWK 64
Query: 217 WLSDADST-----TANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTS 271
WL + + + +K R R L F +N +P+
Sbjct: 65 WLQEPEFQRMSALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSK 124
Query: 272 EEISVLADNLCMNIS 286
E ++ L + +S
Sbjct: 125 ELQITISQQLGLELS 139
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 33.1 bits (74), Expect = 0.077
Identities = 10/57 (17%), Positives = 23/57 (40%)
Query: 223 STTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLAD 279
S ++ S+ + + R+ R + + L +A+ + P+ EE L +
Sbjct: 121 SQQSHGPGQSDDACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVE 177
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A
{Enterobacteria phage lambda}
Length = 236
Score = 32.6 bits (74), Expect = 0.098
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 140 TPARLLDPDETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE 198
T + L ++ D L+ +++++ +LG +Q V MG Q+ +
Sbjct: 2 TKKKPLTQEQLEDARRLKAI---YEKKKNELGLSQESVADKMG------MGQSGVGALF 51
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.35.1.12
Length = 91
Score = 30.9 bits (70), Expect = 0.12
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE 198
++ + K +Q R G TQ D+ + + I+ +E
Sbjct: 3 SGSSGDRVTLEVGKVIQQGRQSKGLTQKDLATKINE------KPQVIADYE 47
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription
regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A
3cro_L*
Length = 71
Score = 30.0 bits (68), Expect = 0.15
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 156 LEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE 198
++ ++ K+RRI L TQ ++ G Q +I E
Sbjct: 1 MQTLSERLKKRRIALKMTQTELATKAG------VKQQSIQLIE 37
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription
complex, serine kinase, DNA-bindin mercury derivative,
repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B*
3hzi_B*
Length = 88
Score = 30.6 bits (69), Expect = 0.15
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 156 LEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA 199
Q A K R + G+TQ ++ +G Q TIS FE
Sbjct: 10 PTQLANAMKLVRQQNGWTQSELAKKIG------IKQATISNFEN 47
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434}
SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A
2r63_A 1sq8_A
Length = 69
Score = 29.9 bits (68), Expect = 0.17
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 159 FAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE 198
+ K +RI+LG Q ++ +G +Q +I + E
Sbjct: 2 ISSRVKSKRIQLGLNQAELAQKVG------TTQQSIEQLE 35
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB:
1f43_A 1yrn_A*
Length = 61
Score = 29.5 bits (67), Expect = 0.18
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 243 RRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
+ K ++SI R LE+ F + S+E +A +
Sbjct: 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGI 44
>2r5x_A Protein YUGN, uncharacterized conserved protein; structural
genomics, unknown function, PSI-2, protein struct
initiative; 2.04A {Geobacillus kaustophilus}
Length = 129
Score = 29.9 bits (67), Expect = 0.43
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 84 LQNQVQQAVAQAAQQLQQLQKQSHHHHQ 111
L +Q Q +AQ +L++++++ HHHH
Sbjct: 101 LVSQCQNVLAQVKSELEKIKEEGHHHHH 128
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A
{Thermoplasma acidophilum dsm 1728}
Length = 224
Score = 30.7 bits (70), Expect = 0.44
Identities = 5/52 (9%), Positives = 16/52 (30%), Gaps = 10/52 (19%)
Query: 131 RVPAHHIKQTPA-RLLDPDETT---------DLEELEQFAKTFKQRRIKLGF 172
+ H +++ ++ + D+ + + K R K+
Sbjct: 8 ILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKARNRKVTV 59
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix,
DNA-binding, transcription, transcription regulation;
1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB:
3jxb_C 3jxc_L 3jxd_L
Length = 68
Score = 28.7 bits (65), Expect = 0.44
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 157 EQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE 198
+ + + RR KL Q +G +G S IS++E
Sbjct: 4 QLMGERIRARRKKLKIRQAALGKMVG------VSNVAISQWE 39
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria
phage P22} SCOP: a.35.1.2
Length = 76
Score = 28.4 bits (64), Expect = 0.52
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 157 EQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE 198
+ + + RR KL Q +G +G S IS++E
Sbjct: 4 QLMGERIRARRKKLKIRQAALGKMVG------VSNVAISQWE 39
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 28.3 bits (63), Expect = 0.58
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 243 RRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
+ K+R + LE +F QNP P EE+ L M
Sbjct: 9 TKYKERAPEQLRA---LESSFAQNPLPLDEELDRLRSETKM 46
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 28.8 bits (64), Expect = 0.59
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 237 TPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
P+ ++ K++T+ + V L+ +FL + T EE++ L +
Sbjct: 7 GPDFTPQKFKEKTAEQLRV---LQASFLNSSVLTDEELNRLRAQTKL 50
>3nj2_A DUF269-containing protein; cyanobacteria, circadium rhythms,
nitrogen fixation, unknown; 1.59A {Cyanothece SP}
Length = 174
Score = 29.9 bits (67), Expect = 0.66
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 12/72 (16%)
Query: 106 SHHHHQKLSPQSQQSGNTTPPSSNIRVPAHH------IKQTPARLLDP----DETTDLEE 155
SHHHH S + + T +N + ++Q R D TD
Sbjct: 4 SHHHHHHSSGLVPRGSHMTNSETNTLLVEQSPFLQSLVQQI--RAYDHYGVYRTWTDELV 61
Query: 156 LEQFAKTFKQRR 167
+ + K+RR
Sbjct: 62 IAPYVIPKKKRR 73
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
transcription regulat; HET: MSE; 1.90A {Listeria
innocua}
Length = 114
Score = 28.6 bits (64), Expect = 0.89
Identities = 5/49 (10%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 150 TTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE 198
+ + QFA+ + + + G + + T++ +
Sbjct: 1 SNAMTIQHQFAENLSRLKKEHGLKNHQIAELLN------VQTRTVAYYM 43
>3pu6_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics; 2.60A {Wolinella succinogenes}
Length = 157
Score = 29.0 bits (65), Expect = 1.0
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 84 LQNQVQQAVAQAAQQLQQLQKQ----SHHHHQ 111
L + A ++++L HHHH
Sbjct: 126 LSQGASDSAFVALGRIKELDGMLKEGHHHHHH 157
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 28.0 bits (62), Expect = 1.1
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 237 TPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMN 284
P+ ++ K++T + + LE +FL++ PT E+ L ++
Sbjct: 9 YPDFAPQKFKEKTQGQVKI---LEDSFLKSSFPTQAELDRLRVETKLS 53
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 29.8 bits (66), Expect = 1.3
Identities = 19/102 (18%), Positives = 28/102 (27%), Gaps = 6/102 (5%)
Query: 41 QQHQHSLQAQLQQFVLFQSASQQNASSSAANSPTGLPPQAQFFLQNQVQQAVAQAAQQLQ 100
Q Q+ A Q Q A++ + G+PPQ Q Q Q Q
Sbjct: 12 AQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQ 71
Query: 101 QLQKQSHHHHQKLSPQSQQSGNTTPPSSNIRVPAHHIKQTPA 142
Q+ + + S N N + Q
Sbjct: 72 QIDQATT------SMNDMHLHNVPLVDPNAYMQPQVPVQMGT 107
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 1.3
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 243 RRRKKRTSIETSVRVALEKAFLQNPKPTSEEI 274
R+ ++ + + R+A +KAF Q P +I
Sbjct: 126 RQSEQVEKNKINNRIA-DKAFYQQPD---ADI 153
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron,
iron-sulfur, metal-binding, oxidoreductase; HET: MCN
FAD; 2.20A {Eubacterium barkeri}
Length = 160
Score = 28.7 bits (65), Expect = 1.3
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 261 KAFLQ-NPKPTSEEI-SVLADNLC 282
KA L NP PT EEI ++ NLC
Sbjct: 113 KALLDKNPDPTDEEITVAMSGNLC 136
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor,
structural genomics, loop insertion, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 95
Score = 28.1 bits (62), Expect = 1.3
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 243 RRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLA 278
R R + +E F +N P + +A
Sbjct: 6 SGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIA 41
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.4
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 20/45 (44%)
Query: 97 QQLQQLQKQSHHHHQKL-SPQSQQSGNTTPPSSNIRVPAHHIKQT 140
Q L++LQ KL + S PA IK T
Sbjct: 20 QALKKLQAS-----LKLYADDS--------------APALAIKAT 45
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural
genomics, PSI-2, protein structure initiative; NMR
{Eubacterium rectale atcc 33656}
Length = 94
Score = 27.8 bits (62), Expect = 1.4
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE 198
++ F++ K TQ ++ ++G S T + +
Sbjct: 5 KQKAIFSENLNSYIAKSEKTQLEIAKSIG------VSPQTFNTWC 43
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 27.4 bits (61), Expect = 1.4
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLA 278
+ K++ + S L+ +F +N P E+ L
Sbjct: 9 SIYKNKKSHEQLSA---LKGSFCRNQFPGQSEVEHLT 42
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase
family, dimer heterotrimers, oxidoreductase; HET: PCD
FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1
d.15.4.2 PDB: 1sb3_C*
Length = 161
Score = 28.3 bits (64), Expect = 1.8
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 261 KAFLQ-NPKPTSEEI-SVLADNLC 282
+A L+ NP P+ +EI + LA NLC
Sbjct: 112 EALLRKNPSPSRDEIKAALAGNLC 135
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A
{Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Length = 99
Score = 27.5 bits (60), Expect = 1.8
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 243 RRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLAD 279
+ R+ R + + L +A+ + P+ EE L +
Sbjct: 8 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVE 44
>2pww_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein struct initiative; 1.82A {Bacillus
clausii} SCOP: d.129.11.1
Length = 127
Score = 28.0 bits (62), Expect = 1.8
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 73 PTGLPPQAQFF---LQNQVQQAVAQAAQQLQQLQKQSHHHHQ 111
P G+ + + F + ++ +A A+ ++ + HHHH
Sbjct: 86 PHGVEYEGETFPQAVIDKCNNKLALLAKTIKAEWEGHHHHHH 127
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix,
transcription/DNA complex; HET: DNA; 1.80A
{Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A
1rio_A 1lli_A*
Length = 92
Score = 27.3 bits (60), Expect = 2.0
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 143 RLLDPDETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE--AL 200
+ L ++ D L+ +++++ +LG +Q V MG Q+ +
Sbjct: 5 KPLTQEQLEDARRLKA---IYEKKKNELGLSQESVADKMG------MGQSGVGALFNGIN 55
Query: 201 NLSFKNMCKLKPLLQ 215
L+ N L +L+
Sbjct: 56 ALNAYNAALLAKILK 70
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein,
helix-turn-H restriction-modification, transcription;
2.00A {Citrobacter SP} PDB: 3lis_A
Length = 98
Score = 27.5 bits (61), Expect = 2.1
Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 159 FAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE 198
+ K R++ G +Q +G+ G + ++++E
Sbjct: 2 LIRRLKDARLRAGISQEKLGVLAG--IDEASASARMNQYE 39
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain,
transcription, RNA binding protein; 2.27A {Pseudomonas
aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5
c.55.3.13 PDB: 3bzk_A 2oce_A
Length = 785
Score = 28.7 bits (65), Expect = 2.3
Identities = 11/54 (20%), Positives = 20/54 (37%)
Query: 58 QSASQQNASSSAANSPTGLPPQAQFFLQNQVQQAVAQAAQQLQQLQKQSHHHHQ 111
+ Q+ + + P + A+A +QL+K+ HHHH
Sbjct: 732 KVEGQRGGRPTGSGQPRQERGAPRGQSAPPANNAMAALFANAKQLKKKHHHHHH 785
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 27.1 bits (59), Expect = 2.5
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 218 LSDADSTTANPSCLSNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVL 277
++ ++ + P++ + + + E L+ AF++ P+ EE L
Sbjct: 1 MAHHHHHHSSGLEVLFQGPAPKSGSTGKICKKTPEQ--LHMLKSAFVRTQWPSPEEYDKL 58
Query: 278 A 278
A
Sbjct: 59 A 59
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum,
molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A
{Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2
PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Length = 166
Score = 27.9 bits (63), Expect = 2.5
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 261 KAFLQ-NPKPTSEEI-SVLADNLC 282
LQ NP PT EI + NLC
Sbjct: 114 HRLLQENPSPTEAEIRFGIGGNLC 137
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase,
protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin,
L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus
musculus} PDB: 2zof_A*
Length = 479
Score = 28.4 bits (64), Expect = 2.9
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 26 SSLSPSELSTLQQTLQQHQHSLQAQLQQFVLFQSASQQNA 65
S S S L + Q + ++Q +L ++V QS S
Sbjct: 1 SPNSMSALKAVFQYIDENQDRYVKKLAEWVAIQSVSAWPE 40
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 26.3 bits (58), Expect = 3.1
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 243 RRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLAD 279
+K+T + + L+ +FLQ+ P E+ L +
Sbjct: 6 HHHRKKTKEQIAH---LKASFLQSQFPDDAEVYRLIE 39
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase;
hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga
pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Length = 163
Score = 27.5 bits (62), Expect = 3.2
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 261 KAFLQ-NPKPTSEEI-SVLADNLC 282
FLQ NP PT EI + NLC
Sbjct: 113 YRFLQENPNPTEAEIRMGMTGNLC 136
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1,
structural genomics, structu genomics consortium, SGC,
metallopeptidase M20 family; 2.26A {Homo sapiens}
Length = 485
Score = 28.5 bits (64), Expect = 3.3
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 16/77 (20%)
Query: 26 SSLSPSELSTLQQTLQQHQHSLQAQLQQFVLFQSASQQNASSSAANSPTGLPPQAQFFLQ 85
S P+ L + Q + HQ L+++V +S S Q +
Sbjct: 6 PSPPPALLEKVFQYIDLHQDEFVQTLKEWVAIESDSVQPVPR----------------FR 49
Query: 86 NQVQQAVAQAAQQLQQL 102
++ + +A AA LQ+L
Sbjct: 50 QELFRMMAVAADTLQRL 66
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA
binding motif, transcriptional regulator, bacter
antitoxin, Zn binding protein, transcription
regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB:
3gn5_A* 3gn5_B* 2kz8_A
Length = 133
Score = 27.0 bits (59), Expect = 3.7
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 6/36 (16%)
Query: 163 FKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE 198
+ R KL TQ + G SR+E
Sbjct: 76 IVKVRKKLSLTQKEASEIFG------GGVNAFSRYE 105
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD;
HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1
d.15.4.2
Length = 168
Score = 27.1 bits (61), Expect = 4.7
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 261 KAFLQ-NPKPTSEEI-SVLADNLC 282
++ L NP P+ +E+ V++ NLC
Sbjct: 119 RSILAENPAPSRDEVREVMSGNLC 142
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit,
P50 subunit, human, DNA replication, DNA-directed DNA
polymerase; HET: DNA; 3.00A {Homo sapiens}
Length = 476
Score = 27.8 bits (61), Expect = 5.0
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 107 HHHHQKLSPQSQQSGNT--TPPSSNIRVPAHHIKQTPARLLDPDETTDLEELEQFAKTFK 164
HHHH S Q+ Q +T +PPS+N A T P + Q+A +
Sbjct: 3 HHHHGMFSEQAAQRAHTLLSPPSANNATFARVPVATYTNSSQPFRLGERSFSRQYAHIYA 62
Query: 165 QRRIKL 170
R I++
Sbjct: 63 TRLIQM 68
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A
{Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A*
3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Length = 164
Score = 26.8 bits (60), Expect = 5.8
Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 265 QNPKPTSEEI-SVLADNLC 282
P+PT EEI NLC
Sbjct: 129 NQPEPTVEEIEDAFQGNLC 147
>3qrz_A Abscisic acid receptor PYL5; crystal, hormone receptor; 2.60A
{Arabidopsis thaliana}
Length = 223
Score = 27.1 bits (59), Expect = 5.9
Identities = 16/80 (20%), Positives = 22/80 (27%), Gaps = 4/80 (5%)
Query: 41 QQHQHSLQAQLQQFVLFQSASQQNASSSAANSPTGLPPQAQFFLQNQVQQAVAQAAQQLQ 100
H HS L +S Q S A N L P Q + +
Sbjct: 5 HHHHHSSGENLYFQGHMRSPVQLQHGSDATNGFHTLQPHD----QTDGPIKRVCLTRGMH 60
Query: 101 QLQKQSHHHHQKLSPQSQQS 120
+ + HH + P S
Sbjct: 61 VPEHVAMHHTHDVGPDQCCS 80
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain,
transcription factor, leucine zipper- containing factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 76
Score = 25.7 bits (56), Expect = 6.3
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLAD 279
G K++T + ++ L+ FLQ E+ L
Sbjct: 4 GSSGKRKTKEQLAI---LKSFFLQCQWARREDYQKLEQ 38
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 80
Score = 25.5 bits (56), Expect = 7.2
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 243 RRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLA 278
R ++ RT+I L + +L + PT + + +A
Sbjct: 16 RDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIA 51
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein;
periplasmic binding protein, MBP, maltotriose; HET: MLR;
1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Length = 382
Score = 27.0 bits (60), Expect = 7.4
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 88 VQQAVAQAAQQLQQLQKQSHHHH 110
V++A+ A ++++ + SHHHH
Sbjct: 358 VEEALKNAVERIKAQIQGSHHHH 380
>3ivp_A Putative transposon-related DNA-binding protein; APC62618,
clostridium diffic structural genomics, PSI-2, protein
structure initiative; HET: PG4; 2.02A {Clostridium
difficile}
Length = 126
Score = 25.9 bits (57), Expect = 8.0
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 6/44 (13%)
Query: 155 ELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE 198
+ K+ R K G T+ VG + ++ E
Sbjct: 9 DFRALGLAIKEARKKQGLTREQVGAMIE------IDPRYLTNIE 46
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
DNA-binding, homeobox, NUC developmental protein; 2.70A
{Drosophila melanogaster}
Length = 93
Score = 25.6 bits (56), Expect = 8.3
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 242 GRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
+R+K RTS LEK F + S E + LA L M
Sbjct: 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKM 56
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 26.7 bits (58), Expect = 9.0
Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 10/87 (11%)
Query: 25 LSSLSPSELSTLQQTLQQHQHSLQAQLQQFVLFQSASQQNASSSAANSPTGLPPQAQFFL 84
L+ + + L+Q + + + Q + + A + + LP FL
Sbjct: 107 LAGYPAPANAAVGAALEQLREAEEGQRKAW----------AIALLSGQFDLLPAALVPFL 156
Query: 85 QNQVQQAVAQAAQQLQQLQKQSHHHHQ 111
+Q A + L++
Sbjct: 157 GAALQVAWSHWLLGLEEGAVVETESRT 183
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein,
homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP:
a.4.1.1
Length = 66
Score = 25.0 bits (55), Expect = 9.3
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 10/50 (20%)
Query: 243 RRRKKRTSIETSVRVALEKAFLQNPKP---TSEEISVLADNLCMNISLTE 289
+ + RT + L + NP+P E++ L+
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLV-------EMTGLSP 44
>3ubk_A Glutathione transferase; GSH binding; 1.95A {Leptospira interrogans
serovar lai} PDB: 3ubl_A*
Length = 242
Score = 26.6 bits (59), Expect = 9.8
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 91 AVAQAAQQLQQLQKQSHHHHQKLS-PQSQQ 119
A A+ + L QSHHHH S PQ ++
Sbjct: 213 ARAKTKIGAENLYFQSHHHHHHWSHPQFEK 242
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.124 0.341
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,002,573
Number of extensions: 223320
Number of successful extensions: 1112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1079
Number of HSP's successfully gapped: 147
Length of query: 289
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 196
Effective length of database: 4,105,140
Effective search space: 804607440
Effective search space used: 804607440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.1 bits)