RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6088
(289 letters)
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 75
Score = 130 bits (328), Expect = 2e-39
Identities = 68/75 (90%), Positives = 73/75 (97%)
Query: 148 DETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 207
+E +DLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM
Sbjct: 1 EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNM 60
Query: 208 CKLKPLLQKWLSDAD 222
KLKPLL+KWL+DA+
Sbjct: 61 SKLKPLLEKWLNDAE 75
>d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 72
Score = 127 bits (320), Expect = 4e-38
Identities = 43/70 (61%), Positives = 54/70 (77%)
Query: 153 LEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKP 212
+ LEQFA FK RRIKLG+TQ +VG A+ ++G++FSQTTI RFE L LSFKN CKLK
Sbjct: 2 MRALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKA 61
Query: 213 LLQKWLSDAD 222
+L KWL +A+
Sbjct: 62 ILSKWLEEAE 71
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 39.0 bits (91), Expect = 4e-05
Identities = 15/53 (28%), Positives = 20/53 (37%)
Query: 232 SNPLTTPEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMN 284
+NP RKKR + LEK FL N T + +A L +
Sbjct: 1 NNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLT 53
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 37.7 bits (87), Expect = 1e-04
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 243 RRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMN 284
R++KRTSIE VR +LE FL+ PKP+ ++I+ +A+ L +
Sbjct: 7 ARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLE 48
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 36.0 bits (83), Expect = 3e-04
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 243 RRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMN 284
++R+ RT+ S LE+AF + P LA +
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLT 42
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 35.7 bits (82), Expect = 4e-04
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 246 KKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
K+RT+I + + ALE+ F ++ KP+S+EI +A+ L +
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNL 38
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 35.2 bits (81), Expect = 5e-04
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 245 RKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
RKKR LE+ + N T ++ ++ +
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSL 40
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 35.3 bits (81), Expect = 5e-04
Identities = 24/37 (64%), Positives = 34/37 (91%)
Query: 247 KRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
KRTSIET++RVALEK+F++N KPTSE+I+++A+ L M
Sbjct: 1 KRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNM 37
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 35.3 bits (81), Expect = 6e-04
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 245 RKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
R++RT + LE F +N P +A +
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNL 40
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 35.4 bits (81), Expect = 8e-04
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 243 RRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
++RK+R + LE+ F Q ++ E LA + +
Sbjct: 8 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRL 48
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 35.4 bits (81), Expect = 9e-04
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 245 RKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
R R + +E F +N P + +A+
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNA 39
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 34.0 bits (78), Expect = 0.002
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 243 RRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
+ + RT + L + NP+P + L + +
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGL 42
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 33.7 bits (77), Expect = 0.002
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 248 RTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
++SI R LE+ F + S+E +A +
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGI 36
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller
protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Length = 69
Score = 32.8 bits (75), Expect = 0.005
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 154 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA--LNLSFKNMCKL 210
+L +F + ++ R G +Q + G ++ + E N+S N+ KL
Sbjct: 5 ADLVKFGQRLRELRTAKGLSQETLAFLSG------LDRSYVGGVERGQRNVSLVNILKL 57
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 32.6 bits (74), Expect = 0.006
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 244 RRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMN 284
RRK+R + LE+ F Q ++ E LA + +
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLT 42
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus
caldolyticus [TaxId: 1394]}
Length = 77
Score = 32.5 bits (74), Expect = 0.009
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 151 TDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE 198
++E +F +T K+ R + G +Q ++ G +T IS E
Sbjct: 3 NEIEIKRKFGRTLKKIRTQKGVSQEELADLAG------LHRTYISEVE 44
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 31.3 bits (71), Expect = 0.014
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 245 RKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
+ + + LEK F + E LA L +
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQL 39
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 31.7 bits (72), Expect = 0.014
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 245 RKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMN 284
++ RTS ALEK F + P LA + +
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLP 41
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 30.6 bits (69), Expect = 0.019
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 246 KKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMN 284
+ RT+ + L++ F +N T L+ L +N
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLN 39
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 30.9 bits (70), Expect = 0.023
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 245 RKKRTSIETSVRVALEKAFLQ---NPKPTSEEISVLADNLCMN 284
+ KR + + Q +P PT +E +A +
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLT 45
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 29.9 bits (67), Expect = 0.043
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 245 RKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
RK RT T+ +ALE+ F Q + E + + +L +
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSL 39
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 28.7 bits (64), Expect = 0.097
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 248 RTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMN 284
R R L F +N +P+ E ++ L +
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLE 38
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 29.3 bits (65), Expect = 0.11
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 242 GRRRKKRTSIETSVRVALEKAFLQ-NPKPTSEEISVLADNLCMN 284
+ RT I L+ P E I L+ L +
Sbjct: 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLP 48
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 28.6 bits (64), Expect = 0.12
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 248 RTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMN 284
R + + LEK F N T +A L +
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLT 37
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 28.4 bits (63), Expect = 0.21
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 245 RKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
R+ RT+ +S LE+ FLQ T+ ++ L+ L +
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLAL 40
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
subunit 1 {Thermus thermophilus [TaxId: 274]}
Length = 437
Score = 30.5 bits (68), Expect = 0.25
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 144 LLDPDETTDLEELEQFAKTFKQ 165
L E + E+L + K+
Sbjct: 414 LFAATELHEEEDLLALREALKE 435
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 27.8 bits (61), Expect = 0.33
Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 238 PEAIGRRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
P+ ++ K++T+ + V L+ +FL + T EE++ L +
Sbjct: 1 PDFTPQKFKEKTAEQLRV---LQASFLNSSVLTDEELNRLRAQTKL 43
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 27.7 bits (61), Expect = 0.52
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 243 RRRKKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCMN 284
RT+ T LEK F N + +A L +N
Sbjct: 26 SPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELN 67
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain
{Bacillus subtilis [TaxId: 1423]}
Length = 68
Score = 26.6 bits (59), Expect = 0.93
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Query: 164 KQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA---LNLSFKNMCKL 210
KQ R + G++ ++ G +++ +S E N S + + K+
Sbjct: 7 KQYRKEKGYSLSELAEKAG------VAKSYLSSIERNLQTNPSIQFLEKV 50
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 26.0 bits (57), Expect = 1.0
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 246 KKRTSIETSVRVALEKAFLQNPKPTSEEISVLADNLCM 283
+ RT+ LEK F + + LA L +
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNL 38
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal
domain {Nitrosomonas europaea [TaxId: 915]}
Length = 67
Score = 26.2 bits (58), Expect = 1.1
Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 6/38 (15%)
Query: 161 KTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE 198
+ F + + A+G S+ +S +
Sbjct: 4 EMFGDWMHRNNLSLTTAAEALG------ISRRMVSYYR 35
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 26.1 bits (57), Expect = 1.3
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 245 RKKRTSIETSVRVALEKAFLQ---NPKPTSEEISVLADNLCMN 284
R+KR + L + F NP P+ E LA +
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGIT 44
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Length = 65
Score = 26.0 bits (57), Expect = 1.4
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 156 LEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISR 196
++ ++ K+RRI L TQ ++ G Q +I
Sbjct: 1 MQTLSERLKKRRIALKMTQTELATKAG------VKQQSIQL 35
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain
{Salmonella bacteriophage P22 [TaxId: 10754]}
Length = 66
Score = 25.6 bits (56), Expect = 1.6
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 157 EQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA--LNLSFKNMCKL 210
+ + + RR KL Q +G +G S IS++E + +N+ L
Sbjct: 2 QLMGERIRARRKKLKIRQAALGKMVG------VSNVAISQWERSETEPNGENLLAL 51
>d1t98a2 a.47.6.1 (A:119-281) Chromosome partition protein MukF
(KicB), C-terminal domain {Escherichia coli [TaxId:
562]}
Length = 163
Score = 27.1 bits (60), Expect = 1.7
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 8 SQLLLQNHQLASLPLPNLSSLSPSELSTLQQTLQQHQHSLQAQLQQFVLFQSASQQNASS 67
+QLL ++ + A L S + L LQ TL+ LQA L + Q A+ +
Sbjct: 72 AQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLR---IQDATMTHDDL 128
Query: 68 SAANSPTGLPPQAQFFLQNQVQQAVA--QAAQQL 99
+ + F LQ+++ + ++ Q + L
Sbjct: 129 HFVD-------RLVFDLQSKLDRIISWGQQSIDL 155
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain
{Bacteriophage lambda [TaxId: 10710]}
Length = 87
Score = 25.8 bits (56), Expect = 2.7
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 147 PDETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMG 182
P LE+ + +++++ +LG +Q V MG
Sbjct: 1 PLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMG 36
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK
{Desulfitobacterium hafniense [TaxId: 49338]}
Length = 139
Score = 26.5 bits (57), Expect = 2.8
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 145 LDPDETTDLEELEQFAKTFKQRRIKLG---FTQGDVGLAM 181
+ PD +E+L + + R G G+ +M
Sbjct: 6 IIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSM 45
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 24.3 bits (53), Expect = 3.7
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 259 LEKAFL-QNPKPTSEEISVLADNLCMN 284
LEK F P + + L+ L +
Sbjct: 8 LEKVFTAITKHPDEKRLEGLSKQLDWD 34
>d3dbya1 a.29.13.1 (A:5-125) Uncharacterized protein BCE_G9241_0798
{Bacillus cereus [TaxId: 1396]}
Length = 121
Score = 25.9 bits (57), Expect = 3.8
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 144 LLDPDETTDLEELEQFAKTFKQ 165
L P E D+++ F +TF
Sbjct: 27 ALAPKEKEDIKKATYFVETFTN 48
>d3d19a2 a.29.13.1 (A:145-274) Uncharacterized protein
BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
Length = 130
Score = 25.6 bits (56), Expect = 4.2
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 144 LLDPDETTDLEELEQFAKTFKQ 165
LLDP E ++ F+ F +
Sbjct: 28 LLDPSERKLVDTARNFSNDFDE 49
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator
VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Length = 79
Score = 24.1 bits (52), Expect = 7.7
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 151 TDLEELEQFAKTFKQRRIKLGFTQGDVGLAMG 182
TD+ Q A K R G + G
Sbjct: 1 TDVMFKSQIANQLKNLRKSRGLSLDATAQLTG 32
>d3dbya2 a.29.13.1 (A:126-260) Uncharacterized protein
BCE_G9241_0798 {Bacillus cereus [TaxId: 1396]}
Length = 135
Score = 24.8 bits (54), Expect = 8.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 144 LLDPDETTDLEELEQFAKTFKQ 165
LD E E+ E+F K F+Q
Sbjct: 25 GLDLVEKRLKEKSEEFTKHFEQ 46
>d3d19a1 a.29.13.1 (A:11-144) Uncharacterized protein BCE_G9241_1042
{Bacillus cereus [TaxId: 1396]}
Length = 134
Score = 24.8 bits (54), Expect = 8.6
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 144 LLDPDETTDLEELEQFAKTFKQ 165
++T +EE QF + F+
Sbjct: 34 GFRCEDTQLIEEANQFYRLFEH 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.124 0.341
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 937,863
Number of extensions: 39518
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 71
Length of query: 289
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,254,276
Effective search space: 257126580
Effective search space used: 257126580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.0 bits)