BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6089
(313 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YX2|A Chain A, Crystal Structure Of The Probable Aminomethyltransferase
From Bacillus Subtilis
pdb|1YX2|B Chain B, Crystal Structure Of The Probable Aminomethyltransferase
From Bacillus Subtilis
Length = 365
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 123/240 (51%), Gaps = 10/240 (4%)
Query: 76 PKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVN-IPVGGISH 134
P F +++E+ A G+ D+S +++++ +D + +LQ+L +NDV+ + G +
Sbjct: 30 PVQFSSIKKEHEAVRTAAGLFDVSHXGEVEVSGNDS--LSFLQRLXTNDVSALTPGRAQY 87
Query: 135 TGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYT 194
T GG +D ++ ++ E Y +V S + W K H + + + + +
Sbjct: 88 TAXCYPDGGTVDDLLIYQKGENRYLLVINASNIDKDLAWXKEHAAGD--VQIDNQSDQIA 145
Query: 195 VINVVGPKAKQLLSELCDEDIN-LHPFSY-KRTDI-GYASDVKLMGFTHTGEPGYCLYIP 251
++ V GPKA+ +L L D D++ L PF++ DI G + + G+T GE GY +Y
Sbjct: 146 LLAVQGPKAEAILKNLTDADVSALKPFAFIDEADISGRKALISRTGYT--GEDGYEIYCR 203
Query: 252 SEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVK 311
S+ A H+++KI+ G Y G+ + +R E IP + ++L TP E+G + VK
Sbjct: 204 SDDAXHIWKKIIDAGDAYGLIPCGLGARDTLRFEANIPLYGQELTRDITPIEAGIGFAVK 263
>pdb|1WOO|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
pdb|1WOP|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
pdb|1WOR|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
pdb|1WOS|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
Length = 364
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 128/242 (52%), Gaps = 10/242 (4%)
Query: 76 PKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVN-IPVGGISH 134
P ++ + EE A + VG+ D+S + + + V ++ L +ND + +P G +
Sbjct: 26 PLYYTSIFEEVMAVRKSVGMFDVSHMGEFLVKGPEA--VSFIDFLITNDFSSLPDGKAIY 83
Query: 135 TGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHY-ITLSDVTSKY 193
+ M NE GG +D ++ + + MV + + F W+K+H +K++ + +S+++
Sbjct: 84 SVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSH--SKNFDVEVSNISDTT 141
Query: 194 TVINVVGPKAKQLLSELCDEDIN-LHPFSYKRTDI-GYASDVKLMGFTHTGEPGYCLYIP 251
+I GPKA++ L EL ++ + + +S++++ + G + V G+T GE G+ L +
Sbjct: 142 ALIAFQGPKAQETLQELVEDGLEEIAYYSFRKSIVAGVETLVSRTGYT--GEDGFELMLE 199
Query: 252 SEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVK 311
++ A V+ +M L + + R G+ + R+E + +D++ T PFE G ++ VK
Sbjct: 200 AKNAPKVWDALMNLLRKIDGRPAGLGARDVCRLEATYLLYGQDMDENTNPFEVGLSWVVK 259
Query: 312 LD 313
L+
Sbjct: 260 LN 261
>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Acetate
pdb|1PJ6|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Folic Acid
pdb|1PJ7|A Chain A, Structure Of Dimethylglycine Oxidase Of Arthrobacter
Globiformis In Complex With Folinic Acid
Length = 830
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 150/362 (41%), Gaps = 61/362 (16%)
Query: 9 AGGIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIREVVGSTYRVGDP-RPE 67
+ G+ +A+AE +T G + +L D+ RF D+ +Y+ + ++ Y V P +P
Sbjct: 365 SAGVAKAMAELLTTGRSETDLGECDITRFEDVQLTPEYVSETSQQNFVEIYDVLHPLQPR 424
Query: 68 MPP---------------GTFF-------KPKFFDF-------MEEEY----RACFEG-- 92
+ P G FF +P +F+ M E+ R + G
Sbjct: 425 LSPRNLRVSPFHARHKELGAFFLEAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMF 484
Query: 93 ---------------VGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNIPVGGISHTGM 137
V + DM+ ++++ S + LQ+L + D+ G +++T +
Sbjct: 485 SSPIAAAEAWKTRTAVAMYDMTPLKRLEV--SGPGALKLLQELTTADLAKKPGAVTYTLL 542
Query: 138 QNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHL----PTKHYITLSDVTSKY 193
+ GG +D + R +E ++ + + + T FE H ++ + D T
Sbjct: 543 LDHAGGVRSDITVARLSEDTFQLGANGNIDTAYFERAARHQTQSGSATDWVQVRDTTGGT 602
Query: 194 TVINVVGPKAKQLLSELCDEDI---NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYI 250
I + GP A+ L+S++ D+D L F K IG V M ++ GE G+ LY
Sbjct: 603 CCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIG-GIPVTAMRLSYVGELGWELYT 661
Query: 251 PSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRV 310
++ ++ + G+ + G +R+EK W D+ + PFE+G + V
Sbjct: 662 SADNGQRLWDALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEAGLGFAV 721
Query: 311 KL 312
K+
Sbjct: 722 KM 723
>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant
Of Arthrobacter Globiformis In Complex With
Tetrahydrofolate
Length = 827
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 79/362 (21%), Positives = 149/362 (41%), Gaps = 61/362 (16%)
Query: 9 AGGIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIREVVGSTYRVGDP-RPE 67
+ G+ +A+AE +T G + +L D+ RF D+ +Y+ + ++ Y V P +P
Sbjct: 362 SAGVAKAMAELLTTGRSETDLGECDITRFEDVQLTPEYVSETSQQNFVEIYDVLHPLQPR 421
Query: 68 MPP---------------GTFF-------KPKFFDF-------MEEEY----RACFEG-- 92
+ P G FF +P +F+ M E+ R + G
Sbjct: 422 LSPRNLRVSPFHARHKELGAFFLEAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMF 481
Query: 93 ---------------VGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNIPVGGISHTGM 137
V + DM+ ++++ S + LQ+L + D+ G +++T +
Sbjct: 482 SSPIAAAEAWKTRTAVAMYDMTPLKRLEV--SGPGALKLLQELTTADLAKKPGAVTYTLL 539
Query: 138 QNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHL----PTKHYITLSDVTSKY 193
+ GG + + R +E ++ + + + T FE H ++ + D T
Sbjct: 540 LDHAGGVRSAITVARLSEDTFQLGANGNIDTAYFERAARHQTQSGSATDWVQVRDTTGGT 599
Query: 194 TVINVVGPKAKQLLSELCDEDI---NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYI 250
I + GP A+ L+S++ D+D L F K IG V M ++ GE G+ LY
Sbjct: 600 CCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIG-GIPVTAMRLSYVGELGWELYT 658
Query: 251 PSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRV 310
++ ++ + G+ + G +R+EK W D+ + PFE+G + V
Sbjct: 659 SADNGQRLWDALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEAGLGFAV 718
Query: 311 KL 312
K+
Sbjct: 719 KM 720
>pdb|1VRQ|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
From Corynebacterium Sp. U-96 In Complex With Folinic
Acid
pdb|1X31|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
From Corynebacterium Sp. U-96
pdb|3AD7|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Methylthio Acetate
pdb|3AD8|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Pyrrole 2-Carboxylate
pdb|3AD9|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 Sarcosine-Reduced Form
pdb|3ADA|A Chain A, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Sulfite
Length = 964
Score = 77.0 bits (188), Expect = 1e-14, Method: Composition-based stats.
Identities = 57/250 (22%), Positives = 122/250 (48%), Gaps = 14/250 (5%)
Query: 73 FFKPKFFDFMEEE-YRAC---FEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSND-VNI 127
++ P+ + M+E YR C + VG++D S+ KI+I D + ++L ++ +N +
Sbjct: 599 WYYPQDGESMDEAVYRECKAVRDSVGMLDASTLGKIEIRGKDAA--EFLNRMYTNGYTKL 656
Query: 128 PVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHY---I 184
VG + M G +D + +R E + M + T V +W++ L T+ +
Sbjct: 657 KVGMGRYGVMCKADGMIFDDGVTLRLAEDRFLMHTTTGGAADVLDWLEEWLQTEWPELDV 716
Query: 185 TLSDVTSKYTVINVVGPKAKQLLSELCDE-DINLHPF---SYKRTDIGYASDVKLMGFTH 240
T + VT + + VVGP+++ ++++L D++ F +++ + + ++ +
Sbjct: 717 TCTSVTEQLATVAVVGPRSRDVIAKLASSLDVSNDAFKFMAFQDVTLDSGIEARISRISF 776
Query: 241 TGEPGYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTT 300
+GE + + IP+ + L V++ + G+++N G T +R EK +D + T
Sbjct: 777 SGELAFEIAIPAWHGLQVWEDVYAAGQEFNITPYGTETMHVLRAEKGFIIVGQDTDGTVT 836
Query: 301 PFESGSAYRV 310
P ++G + V
Sbjct: 837 PQDAGMEWVV 846
>pdb|2GAG|A Chain A, Heteroteterameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 965
Score = 72.4 bits (176), Expect = 3e-13, Method: Composition-based stats.
Identities = 51/234 (21%), Positives = 114/234 (48%), Gaps = 10/234 (4%)
Query: 85 EYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSND-VNIPVGGISHTGMQNERGG 143
E +A + VG++D ++ KI+I D + ++L ++ +N + VG + M G
Sbjct: 616 ESKAVRDSVGMLDATTLGKIEIRGKDAA--EFLNRIYTNGYTKLKVGMGRYGVMCKADGM 673
Query: 144 YENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHY---ITLSDVTSKYTVINVVG 200
+D + +R E + + + T V +W++ L T+ +T + VT + + VVG
Sbjct: 674 IFDDGVTLRLAEDRFLLHTTTGGAADVLDWLEEWLQTEWPDLDVTCTSVTEQLATVAVVG 733
Query: 201 PKAKQLLSELCDE-DINLHPF---SYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYAL 256
P+++ ++++L D++ F ++K + + ++ + +GE + + +P+ + L
Sbjct: 734 PRSRDVIAKLASTVDVSNEGFKFMAFKDVVLDSGIEARISRISFSGELAFEIAVPAWHGL 793
Query: 257 HVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRV 310
V++ + G+++N G T +R EK +D + TP ++G + V
Sbjct: 794 RVWEDVYAAGEEFNITPYGTETMHVLRAEKGFIIVGQDTDGTVTPQDAGMEWVV 847
>pdb|2GAH|A Chain A, Heterotetrameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 965
Score = 70.5 bits (171), Expect = 1e-12, Method: Composition-based stats.
Identities = 50/234 (21%), Positives = 112/234 (47%), Gaps = 10/234 (4%)
Query: 85 EYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSND-VNIPVGGISHTGMQNERGG 143
E +A + VG +D ++ KI+I D + ++L ++ +N + VG + G
Sbjct: 616 ESKAVRDSVGXLDATTLGKIEIRGKDAA--EFLNRIYTNGYTKLKVGXGRYGVXCKADGX 673
Query: 144 YENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHY---ITLSDVTSKYTVINVVG 200
+D + +R E + + + T V +W++ L T+ +T + VT + + VVG
Sbjct: 674 IFDDGVTLRLAEDRFLLHTTTGGAADVLDWLEEWLQTEWPDLDVTCTSVTEQLATVAVVG 733
Query: 201 PKAKQLLSELCDE-DINLHPF---SYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYAL 256
P+++ ++++L D++ F ++K + + ++ + +GE + + +P+ + L
Sbjct: 734 PRSRDVIAKLASTVDVSNEGFKFXAFKDVVLDSGIEARISRISFSGELAFEIAVPAWHGL 793
Query: 257 HVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRV 310
V++ + G+++N G T +R EK +D + TP ++G + V
Sbjct: 794 RVWEDVYAAGEEFNITPYGTETXHVLRAEKGFIIVGQDTDGTVTPQDAGXEWVV 847
>pdb|1V5V|A Chain A, Crystal Structure Of A Component Of Glycine Cleavage
System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5
A Resolution
pdb|1V5V|B Chain B, Crystal Structure Of A Component Of Glycine Cleavage
System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5
A Resolution
Length = 401
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 107/232 (46%), Gaps = 26/232 (11%)
Query: 76 PKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNIP--VGGIS 133
P ++ ++EE+ A VGI D+S +I D + +LQ + +ND++ P + G +
Sbjct: 30 PIWYSSIKEEHLAVRNAVGIFDVSHMGEIVFRGKDA--LKFLQYVTTNDISKPPAISG-T 86
Query: 134 HTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDV---- 189
+T + NERG +++ ++ Y M+ + +++ W T T D+
Sbjct: 87 YTLVLNERGAIKDETLVFNMGNNEYLMICDSDAFEKLYAWFTYLKRTIEQFTKLDLEIEL 146
Query: 190 -TSKYTVINVVGPKAKQLLSELCDEDIN-LHPFSYKRTDIGYASDVKLMGFTHTGEPGYC 247
T + V GPKA+ L +L DIN + F + ++ + L +TGE G+
Sbjct: 147 KTYDIAMFAVQGPKARDLAKDLFGIDINEMWWFQARWVELD-GIKMLLSRSGYTGENGFE 205
Query: 248 LYIPS--------------EYALHVYQKIMTLGKDYNARDVGMFTQRYMRIE 285
+YI E ALHV+++I+ GK Y + G+ + +R+E
Sbjct: 206 VYIEDANPYHPDESKRGEPEKALHVWERILEEGKKYGIKPCGLGARDTLRLE 257
>pdb|3A8I|A Chain A, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8I|B Chain B, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8I|C Chain C, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8I|D Chain D, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8J|A Chain A, Crystal Structure Of Et-Ehred Complex
pdb|3A8J|B Chain B, Crystal Structure Of Et-Ehred Complex
pdb|3A8J|C Chain C, Crystal Structure Of Et-Ehred Complex
pdb|3A8J|D Chain D, Crystal Structure Of Et-Ehred Complex
Length = 364
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 105/231 (45%), Gaps = 14/231 (6%)
Query: 84 EEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVN--IPVGGISHTGMQNER 141
+E+ A G+ D+S + + + S ++L+ L +NDV G ++GM N
Sbjct: 35 DEHHAVRTDAGMFDVSHMTIVDLRGSRTR--EFLRYLLANDVAKLTKSGKALYSGMLNAS 92
Query: 142 GGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHL-PTKHYITLSDVTSKYTVINVVG 200
GG +D I+ TE + +V ++ + + W+ H P IT+ D ++I V G
Sbjct: 93 GGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPFGIEITVRD---DLSMIAVQG 149
Query: 201 PKAKQLLSELCDEDINLHPFSYKRTDIGY-ASDVKLMGFTHTGEPGYCLYIPSEYALHVY 259
P A+ + L + D + G A D+ + +TGE GY + +P+E A +
Sbjct: 150 PNAQAKAATLFN-DAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFW 208
Query: 260 QKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRV 310
+ ++ G + G+ + +R+E + + ++++ +P + + +
Sbjct: 209 RALVEAG----VKPCGLGARDTLRLEAGMNLYGQEMDETISPLAANMGWTI 255
>pdb|3A8K|A Chain A, Crystal Structure Of Etd97n-Ehred Complex
pdb|3A8K|B Chain B, Crystal Structure Of Etd97n-Ehred Complex
pdb|3A8K|C Chain C, Crystal Structure Of Etd97n-Ehred Complex
pdb|3A8K|D Chain D, Crystal Structure Of Etd97n-Ehred Complex
Length = 364
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 105/231 (45%), Gaps = 14/231 (6%)
Query: 84 EEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVN--IPVGGISHTGMQNER 141
+E+ A G+ D+S + + + S ++L+ L +NDV G ++GM N
Sbjct: 35 DEHHAVRTDAGMFDVSHMTIVDLRGSRTR--EFLRYLLANDVAKLTKSGKALYSGMLNAS 92
Query: 142 GGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHL-PTKHYITLSDVTSKYTVINVVG 200
GG ++ I+ TE + +V ++ + + W+ H P IT+ D ++I V G
Sbjct: 93 GGVIDNLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPFGIEITVRD---DLSMIAVQG 149
Query: 201 PKAKQLLSELCDEDINLHPFSYKRTDIGY-ASDVKLMGFTHTGEPGYCLYIPSEYALHVY 259
P A+ + L + D + G A D+ + +TGE GY + +P+E A +
Sbjct: 150 PNAQAKAATLFN-DAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFW 208
Query: 260 QKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRV 310
+ ++ G + G+ + +R+E + + ++++ +P + + +
Sbjct: 209 RALVEAG----VKPCGLGARDTLRLEAGMNLYGQEMDETISPLAANMGWTI 255
>pdb|1VLO|A Chain A, Crystal Structure Of Aminomethyltransferase (T Protein;
Tetrahydrofolate-Dependent) Of Glycine Cleavage System
(Np417381) From Escherichia Coli K12 At 1.70 A
Resolution
Length = 381
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 102/239 (42%), Gaps = 14/239 (5%)
Query: 76 PKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVN--IPVGGIS 133
P + +E+ A G D+S + + + S ++L+ L +NDV G
Sbjct: 39 PLHYGSQIDEHHAVRTDAGXFDVSHXTIVDLRGSRTR--EFLRYLLANDVAKLTKSGKAL 96
Query: 134 HTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHL-PTKHYITLSDVTSK 192
++G N GG +D I+ TE + +V ++ + + W+ H P IT+ D
Sbjct: 97 YSGXLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPFGIEITVRD---D 153
Query: 193 YTVINVVGPKAKQLLSELCDEDINLHPFSYKRTDIGY-ASDVKLMGFTHTGEPGYCLYIP 251
+ I V GP A+ + L + D + G A D+ + +TGE GY + +P
Sbjct: 154 LSXIAVQGPNAQAKAATLFN-DAQRQAVEGXKPFFGVQAGDLFIATTGYTGEAGYEIALP 212
Query: 252 SEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRV 310
+E A ++ ++ G + G+ + +R+E + ++ + +P + + +
Sbjct: 213 NEKAADFWRALVEAG----VKPCGLGARDTLRLEAGXNLYGQEXDETISPLAANXGWTI 267
>pdb|1WSR|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSR|B Chain B, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSV|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSV|B Chain B, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
Length = 375
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 94/215 (43%), Gaps = 13/215 (6%)
Query: 95 IIDMSSFSKIKITCSDESLVDWLQQLCSNDVN--IPVGGISHTGMQNERGGYENDCILVR 152
+ D+S + KI SD V ++ L D+ P G + + NE GG +D I+
Sbjct: 50 LFDVSHMLQTKILGSDR--VKLMESLVVGDIAELRPNQG-TLSLFTNEAGGILDDLIVTN 106
Query: 153 ETETSYFMVSPTSQQTRVFEWMKN---HLPTKHYITLSDVTSKYTVINVVGPKAKQLLSE 209
+E ++VS + M++ L + +V ++ + GP A Q+L
Sbjct: 107 TSEGHLYVVSNAGCWEKDLALMQDKVRELQNQGRDVGLEVLDN-ALLALQGPTAAQVLQA 165
Query: 210 LCDEDINLHPF-SYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKD 268
+D+ PF + ++ S ++ +TGE G + +P A+H+ I+ K+
Sbjct: 166 GVADDLRKLPFMTSAVMEVFGVSGCRVTRCGYTGEDGVEISVPVAGAVHLATAIL---KN 222
Query: 269 YNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFE 303
+ G+ + +R+E + + D++ TTP E
Sbjct: 223 PEVKLAGLAARDSLRLEAGLCLYGNDIDEHTTPVE 257
>pdb|3TFH|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - Apo
pdb|3TFH|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - Apo
pdb|3TFI|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - With Substrate
Dmsp
pdb|3TFI|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - With Substrate
Dmsp
pdb|3TFJ|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - With Cofactor
Thf
pdb|3TFJ|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - With Cofactor
Thf
Length = 369
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 106/242 (43%), Gaps = 14/242 (5%)
Query: 76 PKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNIPVGGISHT 135
P F +E+ Y+ E V I D+++ +++I+ D + + L C + +G +
Sbjct: 38 PAAFGSIEDSYKHLKEHVQIWDVAAERQVEISGKDSAELVQLMT-CRDLSKSKIGRCYYC 96
Query: 136 GMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTV 195
+ +E G ND ++++ E +++ S + L + H + V +
Sbjct: 97 PIIDENGNLVNDPVVLKLDENKWWISIADSDVI----FFAKGLASGHKFDVKIVEPVVDI 152
Query: 196 INVVGPKAKQLLSELCDEDIN-LHPFSYKRTDI-GYASDVKLMGFTHTGEPGYCLYIP-S 252
+ + GPK+ L+ ++ + I L F + D G + G++ G GY +Y+ +
Sbjct: 153 MAIQGPKSFALMEKVFGKKITELKFFGFDYFDFEGTKHLIARSGWSKQG--GYEVYVENT 210
Query: 253 EYALHVYQKIMTLGKDYNARDVGMFTQRYM-RIEKFIPFWAEDLNSVTTPFESGSAYRVK 311
+ +Y + +GK++N VG + RIE + + D ++ PFE G V
Sbjct: 211 QSGQKLYDHLFEVGKEFN---VGPGCPNLIERIESALLSYGNDFDNNDNPFECGFDQYVS 267
Query: 312 LD 313
LD
Sbjct: 268 LD 269
>pdb|3GIR|A Chain A, Crystal Structure Of Glycine Cleavage System
Aminomethyltransferase T From Bartonella Henselae
Length = 393
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/222 (19%), Positives = 91/222 (40%), Gaps = 19/222 (8%)
Query: 93 VGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNI-PVGGISHTGMQNERGGYENDCILV 151
G+ D+S I + V++L D + +G ++ + NER G +D IL
Sbjct: 76 AGLFDISHMKLIAV--EGPKAVEFLSYALPVDAALLKIGQSRYSYLLNERAGILDDLILT 133
Query: 152 RETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELC 211
R E + +V+ F ++ + + ++ + GP+A +L++
Sbjct: 134 RLAECRFMLVANAGNAQADFAELEKR---AFGFECQVIALERVLLALQGPQAAAVLADAG 190
Query: 212 ---DEDINLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKD 268
+E + + F ++ D + +TGE G+ + +P A + +K++ D
Sbjct: 191 LPGNELLFMQGFEPQQ-------DWFITRSGYTGEDGFEIALPIGCARALAEKLL---GD 240
Query: 269 YNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRV 310
VG+ + +R+E + D+ TTP ++ + V
Sbjct: 241 SRVEWVGLAARDSLRLEAGLCLHGNDITPDTTPIDAALTWAV 282
>pdb|1CX8|A Chain A, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|B Chain B, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|C Chain C, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|D Chain D, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|E Chain E, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|F Chain F, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|G Chain G, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|H Chain H, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1SUV|A Chain A, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|1SUV|B Chain B, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|2NSU|A Chain A, Crystal Structure Of The Ectodomain Of Human Transferrin
Receptor Fitted Into A Cryo-Em Reconstruction Of Canine
Parvovirus And Feline Transferrin Receptor Complex
pdb|2NSU|B Chain B, Crystal Structure Of The Ectodomain Of Human Transferrin
Receptor Fitted Into A Cryo-Em Reconstruction Of Canine
Parvovirus And Feline Transferrin Receptor Complex
Length = 639
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Query: 126 NIPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYIT 185
NIPV IS + G E DC +T+++ MV+ S+ + +T
Sbjct: 210 NIPVQTISRAAAEKLFGNMEGDCPSDWKTDSTCRMVTSESKNVK--------------LT 255
Query: 186 LSDVTSKYTVINVVG 200
+S+V + ++N+ G
Sbjct: 256 VSNVLKEIKILNIFG 270
>pdb|1DE4|C Chain C, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|1DE4|F Chain F, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|1DE4|I Chain I, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|3KAS|A Chain A, Machupo Virus Gp1 Bound To Human Transferrin Receptor 1
Length = 640
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Query: 126 NIPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYIT 185
NIPV IS + G E DC +T+++ MV+ S+ + +T
Sbjct: 211 NIPVQTISRAAAEKLFGNMEGDCPSDWKTDSTCRMVTSESKNVK--------------LT 256
Query: 186 LSDVTSKYTVINVVG 200
+S+V + ++N+ G
Sbjct: 257 VSNVLKEIKILNIFG 271
>pdb|3S9L|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9L|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9M|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9M|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9N|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
pdb|3S9N|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
Length = 654
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Query: 126 NIPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYIT 185
NIPV IS + G E DC +T+++ MV+ S+ + +T
Sbjct: 225 NIPVQTISRAAAEKLFGNMEGDCPSDWKTDSTCRMVTSESKNVK--------------LT 270
Query: 186 LSDVTSKYTVINVVG 200
+S+V + ++N+ G
Sbjct: 271 VSNVLKEIKILNIFG 285
>pdb|3TTG|A Chain A, Crystal Structure Of Putative Aminomethyltransferase From
Leptospirillum Rubarum
Length = 355
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 84/226 (37%), Gaps = 40/226 (17%)
Query: 100 SFSKIKITCSDESLVDWLQQLCSNDV-NIPVGGISHTGMQNERGGYENDCILVRETETSY 158
S S+ I E ++LQ + S D+ +S++ N + D E
Sbjct: 42 SVSRPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFDA-WCGNFEDKI 100
Query: 159 FMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDIN-- 216
+ P + +K +L + ++D + + I +VGP+ +L L D + +
Sbjct: 101 ALFPPAGTREEFVNHLKKYLFFRTKAKITDXSDHFREIRLVGPETISVLLSLFDNNFSGS 160
Query: 217 ------------LHPFSYKRT-DIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIM 263
+HP S++ D+G +D L+IP + QK +
Sbjct: 161 SFRXLKNGGYVLIHPTSFQHNLDVGLQAD---------------LFIPID-QFETTQKSL 204
Query: 264 TLGKDYNARDVGMFTQRYMRI----EKFIPFWAEDLNSVTTPFESG 305
+D+ + G+ + EK IP + +LN P E+G
Sbjct: 205 ---EDFTSNKGGVLLDESSYLAYLTEKGIPLFPSELNDSFFPAEAG 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,153,078
Number of Sequences: 62578
Number of extensions: 432287
Number of successful extensions: 1023
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1003
Number of HSP's gapped (non-prelim): 18
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)