Query psy6089
Match_columns 313
No_of_seqs 212 out of 1759
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 17:18:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2844|consensus 100.0 2.4E-81 5.3E-86 604.1 22.7 310 1-313 379-739 (856)
2 COG0404 GcvT Glycine cleavage 100.0 9E-65 2E-69 478.3 24.7 261 35-313 5-270 (379)
3 PLN02319 aminomethyltransferas 100.0 7.9E-57 1.7E-61 432.8 24.7 238 69-311 50-294 (404)
4 PRK12486 dmdA putative dimethy 100.0 2E-56 4.4E-61 424.9 24.2 255 35-313 11-268 (368)
5 TIGR01372 soxA sarcosine oxida 100.0 4.1E-54 9E-59 453.3 26.4 242 69-313 614-871 (985)
6 PRK13579 gcvT glycine cleavage 100.0 1.2E-53 2.5E-58 406.8 24.9 250 36-312 10-262 (370)
7 TIGR00528 gcvT glycine cleavag 100.0 8.6E-53 1.9E-57 399.9 24.4 236 70-313 20-258 (361)
8 PRK00389 gcvT glycine cleavage 100.0 5.4E-51 1.2E-55 387.4 25.7 237 69-313 20-259 (359)
9 KOG2770|consensus 100.0 8.5E-50 1.9E-54 359.7 16.8 254 38-311 28-289 (401)
10 PF01571 GCV_T: Aminomethyltra 100.0 1.7E-47 3.6E-52 337.4 21.4 209 95-309 1-211 (211)
11 PRK09559 putative global regul 100.0 2.6E-35 5.7E-40 276.3 20.4 202 93-313 19-225 (327)
12 COG0354 Predicted aminomethylt 99.9 7.6E-24 1.6E-28 195.2 13.2 196 86-313 7-205 (305)
13 TIGR01375 soxG sarcosine oxida 99.9 2.3E-22 5.1E-27 168.6 14.9 116 147-267 33-151 (152)
14 KOG2929|consensus 99.6 5.9E-15 1.3E-19 133.1 8.7 193 92-313 29-238 (348)
15 PF04268 SoxG: Sarcosine oxida 99.5 6.1E-13 1.3E-17 110.8 11.4 133 114-266 10-145 (147)
16 COG4583 Sarcosine oxidase gamm 99.3 4.1E-11 8.9E-16 101.4 14.7 158 93-270 27-188 (189)
17 TIGR03317 ygfZ_signature folat 98.9 6.1E-10 1.3E-14 80.2 1.9 36 278-313 2-39 (67)
18 PF04268 SoxG: Sarcosine oxida 97.7 0.00063 1.4E-08 56.6 11.3 83 87-177 58-144 (147)
19 TIGR01375 soxG sarcosine oxida 97.6 0.00091 2E-08 55.9 10.4 78 92-177 68-149 (152)
20 COG4583 Sarcosine oxidase gamm 97.5 0.00096 2.1E-08 57.0 9.4 86 85-178 95-184 (189)
21 PF10396 TrmE_N: GTP-binding p 96.0 0.075 1.6E-06 42.2 9.0 74 99-176 12-94 (114)
22 PF10396 TrmE_N: GTP-binding p 95.8 0.11 2.4E-06 41.2 9.4 86 191-280 12-106 (114)
23 PF08170 POPLD: POPLD (NUC188) 95.2 0.027 5.8E-07 43.0 3.9 48 245-296 1-48 (92)
24 COG0486 ThdF Predicted GTPase 92.3 0.33 7.2E-06 47.3 6.2 63 100-165 18-88 (454)
25 PRK00389 gcvT glycine cleavage 90.3 1.4 3.1E-05 41.8 8.5 81 182-266 42-128 (359)
26 TIGR00528 gcvT glycine cleavag 89.7 1.8 3.9E-05 41.2 8.7 80 182-265 41-126 (361)
27 TIGR00450 mnmE_trmE_thdF tRNA 88.8 2.5 5.3E-05 41.6 9.0 85 191-279 7-102 (442)
28 COG0404 GcvT Glycine cleavage 88.2 2.4 5.1E-05 40.9 8.2 79 182-264 46-130 (379)
29 PF01571 GCV_T: Aminomethyltra 88.2 2.5 5.4E-05 36.6 7.9 80 88-177 83-167 (211)
30 PRK13579 gcvT glycine cleavage 88.1 4.3 9.4E-05 38.8 10.0 79 182-265 50-134 (370)
31 PLN02319 aminomethyltransferas 87.1 4 8.8E-05 39.6 9.3 80 182-265 73-158 (404)
32 TIGR00450 mnmE_trmE_thdF tRNA 85.4 2.1 4.6E-05 42.1 6.4 53 99-153 7-59 (442)
33 PRK05291 trmE tRNA modificatio 84.0 6.8 0.00015 38.6 9.3 84 191-279 17-110 (449)
34 PRK12486 dmdA putative dimethy 82.4 8.1 0.00017 37.0 8.9 79 182-264 52-136 (368)
35 PRK09559 putative global regul 78.9 7.4 0.00016 36.5 7.2 77 184-265 19-101 (327)
36 COG0486 ThdF Predicted GTPase 78.6 11 0.00024 37.0 8.3 75 191-266 17-103 (454)
37 PRK05291 trmE tRNA modificatio 78.6 6.7 0.00014 38.6 7.1 74 99-176 17-99 (449)
38 TIGR01372 soxA sarcosine oxida 77.8 12 0.00025 40.8 9.2 80 182-265 644-729 (985)
39 COG0354 Predicted aminomethylt 71.7 10 0.00022 35.4 6.0 79 183-264 13-95 (305)
40 PF06978 POP1: Ribonucleases P 64.5 6.9 0.00015 33.8 3.1 28 81-110 159-186 (187)
41 PF11834 DUF3354: Domain of un 63.8 12 0.00026 26.9 3.7 50 102-160 19-68 (69)
42 KOG2844|consensus 59.6 55 0.0012 34.0 8.7 90 82-176 597-690 (856)
43 TIGR03329 Phn_aa_oxid putative 58.7 6.8 0.00015 38.5 2.3 28 1-28 372-399 (460)
44 KOG2770|consensus 49.6 65 0.0014 30.7 6.9 76 93-175 163-244 (401)
45 COG1791 Uncharacterized conser 31.8 2.9E+02 0.0064 23.6 7.5 93 166-261 80-173 (181)
46 COG4044 Uncharacterized protei 25.3 2.4E+02 0.0052 24.9 6.1 81 168-254 17-99 (247)
47 PF12953 DUF3842: Domain of un 24.2 47 0.001 26.9 1.5 26 7-32 7-33 (131)
48 COG2199 c-di-GMP synthetase (d 23.6 1.9E+02 0.0041 23.7 5.3 56 92-166 53-111 (181)
49 PF14639 YqgF: Holliday-juncti 21.2 92 0.002 25.8 2.8 20 131-150 19-38 (150)
50 COG3323 Uncharacterized protei 20.7 98 0.0021 24.3 2.6 29 244-276 6-34 (109)
No 1
>KOG2844|consensus
Probab=100.00 E-value=2.4e-81 Score=604.12 Aligned_cols=310 Identities=39% Similarity=0.725 Sum_probs=299.0
Q ss_pred CCcccccccchhHHHHHHhHHcCCCCCCccccCccccccccCCHHHHHhhhhcccccccccCCCCC--------------
Q psy6089 1 MNGNSLQGAGGIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIREVVGSTYRVGDPRP-------------- 66 (313)
Q Consensus 1 ~ns~g~~~~gG~g~~la~wi~~g~~~~d~~~~d~~Rf~~~~~~~~~~~~r~~e~~~~~~~~~~p~~-------------- 66 (313)
|||+|++.|||+||+|||||+||+|+.||+.+|+|||+.+++++.|+++|.+|+|+++|.+.||++
T Consensus 379 ~ns~G~~~~GG~Gk~la~wi~~g~p~~d~~~~D~~Rf~~~~~~~~~lr~r~~Es~~~nys~~yp~~e~~agRnlR~sply 458 (856)
T KOG2844|consen 379 FNSAGLSFGGGCGKYLAEWIIHGQPPLDVHELDLRRFGKLQTNRYFLRERAHESYGKNYSVVYPKEEFQAGRNLRMSPLY 458 (856)
T ss_pred CCccceeccCchhHHHHHHhhcCCCCccchhccHHHhhhhhcccHHHhhhchhhhhcccccccchhhhccccccccCccH
Confidence 899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ---------------------CC------------CCCccCCccccccHHHHHHHHHcCeEEEeCCCceEEEEEccCchH
Q psy6089 67 ---------------------EM------------PPGTFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESL 113 (313)
Q Consensus 67 ---------------------~~------------~~~~~~~p~~~~~~~~E~~a~r~~~~l~Dls~~~~i~v~~~G~dA 113 (313)
|. +..+|++|+||+.+..||+|||+.|+++|+|+|+|+.|+ |+||
T Consensus 459 ~~L~~aGav~~e~~G~ERP~~F~~~~kd~~~~~~~q~~tf~kp~wfd~V~SE~~acrerv~v~DmS~F~Kf~i~--G~da 536 (856)
T KOG2844|consen 459 DRLESAGAVFGEKHGWERPGWFYPPGKDDQYLPYGQDSTFRKPEWFDPVGSEYKACRERVGVFDMSSFGKFDIT--GQDA 536 (856)
T ss_pred HHHHhcccchhhhccccCCCccCCCChhhhcccccccccccCCcchhhhHHHHHHHHhhceEeeccccceeeec--cHHH
Confidence 11 224588888999999999999999999999999999999 9999
Q ss_pred HHHHhhhcccCcccCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchHHHHHHHHhhCCC-CCceEEEEecCC
Q psy6089 114 VDWLQQLCSNDVNIPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPT-KHYITLSDVTSK 192 (313)
Q Consensus 114 ~~fL~~l~t~di~l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~~-~~~V~i~d~t~~ 192 (313)
.+.||+||++|++.++|..+||+|||++|++++|++|.|+++++|+|+.++.++.+++.||+++++. +.+|++.|+|++
T Consensus 537 ~e~ld~LfSanv~~~vg~tv~T~mln~~Gg~e~D~tvsrl~~~~f~mia~t~qq~~~~~wi~k~~~~~~~~v~l~DvT~~ 616 (856)
T KOG2844|consen 537 VELLDYLFSANVDVPVGSTVYTGMLNPKGGYEADCTVSRLSPRGFFMIAGTIQQLHDLSWIKKEMPKGGSNVELKDVTDE 616 (856)
T ss_pred HHHHHHHhhcCCCCCCCceeeeeeecCCCCeEeeeeeeeecCCceEEEccchhhhhhHHHHHHHhhccCCceeeeechhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999775 589999999999
Q ss_pred eEEEEEeCccHHHHHhhccccCC---CCCCcceEEEEECCcccEEEEecCCCCCceEEEEeccccHHHHHHHHHhcCccC
Q psy6089 193 YTVINVVGPKAKQLLSELCDEDI---NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDY 269 (313)
Q Consensus 193 ~~~l~l~GP~a~~vL~~l~~~dl---~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~ 269 (313)
+++|+|+||.||.+|++|++.|+ .|||.++++++++++ +++++|++++||+|||||+|++++.++|++|++||+++
T Consensus 617 ~~~l~i~GP~sR~vLqelt~~dls~~~fp~~~~k~l~vg~~-girairis~~GELG~~Lyip~e~~~~vY~~im~AG~~~ 695 (856)
T KOG2844|consen 617 LGALSIIGPQSRKVLQELTDADLSDDHFPFLTTKELKVGNA-GIRAIRISHTGELGWELYIPNEDAVAVYRAIMNAGQEE 695 (856)
T ss_pred hceeeecCchHHHHHHhccCCCCCccccCcceeeeeecccc-ceEEEEEEeccccceEEEechHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999 899999999999995 89999999999999999999999999999999999999
Q ss_pred CceecCccchhhhhhcccCCcccCCCCCCCCcccccCCccccCC
Q psy6089 270 NARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKLD 313 (313)
Q Consensus 270 g~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eagl~~~v~~~ 313 (313)
|++.+|++|+++|||||+|.+||+||++++||+|||+.|+|+|+
T Consensus 696 ~l~naGyya~~aLriEK~y~~Wg~dl~~d~tPlEaGl~f~vk~k 739 (856)
T KOG2844|consen 696 GLQNAGYYALRALRIEKFYRAWGQDLNPDTTPLEAGLEFRVKLK 739 (856)
T ss_pred ccccchhHHHHHHHHHHHHHhhccccCCCCChhhccceeEEecC
Confidence 99999999999999999999999999999999999999999985
No 2
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]
Probab=100.00 E-value=9e-65 Score=478.27 Aligned_cols=261 Identities=29% Similarity=0.511 Sum_probs=245.1
Q ss_pred cccccccCCHHHHHhhhhcccccccccCCCCCCCCCCccCCccccc-cHHHHHHHHHcCeEEEeCCCceEEEEEccCchH
Q psy6089 35 QRFLDLHNNRQYLQQRIREVVGSTYRVGDPRPEMPPGTFFKPKFFD-FMEEEYRACFEGVGIIDMSSFSKIKITCSDESL 113 (313)
Q Consensus 35 ~Rf~~~~~~~~~~~~r~~e~~~~~~~~~~p~~~~~~~~~~~p~~~~-~~~~E~~a~r~~~~l~Dls~~~~i~v~~~G~dA 113 (313)
.|.+|++..+.-+.+++.++.| |.+|.||. ++.+||+|+|++|||||+|||++++|+ ||||
T Consensus 5 ~r~tpl~~~~~~~GA~~~~~~G----------------w~~p~~y~~~v~~Eh~avR~~aGlfDvShmgk~~V~--GpdA 66 (379)
T COG0404 5 LKRTPLYDRHKALGAVFGEFGG----------------WEMPVWYAKSVMEEHLAVREAAGLFDVSHMGKVEVS--GPDA 66 (379)
T ss_pred ccccchHHHHHhcCCEEEeeCC----------------EecceecCccHHHHHHHHHhcCceEeccCceEEEEE--CCCH
Confidence 3558888888888887777766 67888888 899999999999999999999999999 9999
Q ss_pred HHHHhhhcccCcc-cCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchHHHHHHHHhhCC-CCCceEEEEecC
Q psy6089 114 VDWLQQLCSNDVN-IPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLP-TKHYITLSDVTS 191 (313)
Q Consensus 114 ~~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~-~~~~V~i~d~t~ 191 (313)
.+|||+++|||++ +++|+++||+|||++|+|++|++|+|++||+|+|++++++.+++++||+++.. .+.+|+++++|+
T Consensus 67 ~~~L~~l~~ndv~kl~~Gr~~Yt~~lne~G~v~dD~~v~rl~~d~f~lv~~a~~~~~~~~~l~~~~~~~~~~v~~~~~t~ 146 (379)
T COG0404 67 AAFLQRLLTNDVSKLKPGRARYTLMLNEDGGIIDDLIVYRLGEDRFFLVTNAATAEKDLAWLERHQAGPDLDVTLTSVTE 146 (379)
T ss_pred HHHHHHHcccccCcCCCCcEEEeeeECCCCCEEeeEEEEEecCCeEEEEeCccchHHHHHHHHHhhccCCcceEEeeccc
Confidence 9999999999998 88999999999999999999999999999999999999999999999998644 257999999999
Q ss_pred CeEEEEEeCccHHHHHhhccccC-C-CCCCcceEEEEECCcccEEEEecCCCCCceEEEEeccccHHHHHHHHHhcCccC
Q psy6089 192 KYTVINVVGPKAKQLLSELCDED-I-NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDY 269 (313)
Q Consensus 192 ~~~~l~l~GP~a~~vL~~l~~~d-l-~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~ 269 (313)
++++|+||||+|+++|++++..+ . ++||++++++++.+..+++++|++||||+||||+||.+++..+|++|+++|+++
T Consensus 147 ~~~~lalqGPkAr~il~~~~~~~~~~~l~~~~~~~~~i~g~~~~~i~R~gyTGE~G~Ei~~p~~~a~~vw~aL~~aG~~~ 226 (379)
T COG0404 147 DLAVLALQGPKAREVLAKLVDGDLVEALPFFAFKEVTIGGGVPVRISRTGYTGELGFEIYVPAEDAAAVWDALLEAGEKF 226 (379)
T ss_pred cEEEEEEECcCHHHHHHHhccccccccCCceEEEEEEecCCceEEEEeccccCCCeEEEEecHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999877 3 899999999999875469999999999999999999999999999999999999
Q ss_pred CceecCccchhhhhhcccCCcccCCCCCCCCcccccCCccccCC
Q psy6089 270 NARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKLD 313 (313)
Q Consensus 270 g~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eagl~~~v~~~ 313 (313)
|++|+|+.|+++||||||++.||+|++++++|+|+||+|+|+++
T Consensus 227 g~~P~Gl~A~dtLRlE~g~~l~g~d~~~~~~P~eagl~~~v~~~ 270 (379)
T COG0404 227 GVKPCGLGARDTLRLEAGLRLYGQDLDETITPLEAGLGWAVKLD 270 (379)
T ss_pred CceEeecchhhHhhhhcCccccccccCCCCCHhhcCcceEecCC
Confidence 99999999999999999999999999999999999999999874
No 3
>PLN02319 aminomethyltransferase
Probab=100.00 E-value=7.9e-57 Score=432.76 Aligned_cols=238 Identities=21% Similarity=0.370 Sum_probs=222.6
Q ss_pred CCCccCCccccc-cHHHHHHHHHcCeEEEeCCCceEEEEEccCchHHHHHhhhcccCcc-cCCCCEEEeeeecCCCeeEE
Q psy6089 69 PPGTFFKPKFFD-FMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVN-IPVGGISHTGMQNERGGYEN 146 (313)
Q Consensus 69 ~~~~~~~p~~~~-~~~~E~~a~r~~~~l~Dls~~~~i~v~~~G~dA~~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~ 146 (313)
+.++|++|.||+ .+.+||+|||++|+|+|+|+|++|+|+ |+||.+|||+++||||+ +++|+++||++||++|+|++
T Consensus 50 ~~~Gwe~p~~y~~~~~~E~~a~R~~~gl~DlS~~~~i~V~--G~Da~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~ii~ 127 (404)
T PLN02319 50 PFAGWSMPIQYKDSIMDSTLNCRQNGSLFDVSHMCGLSLK--GKDAIPFLETLVVADIAGLKDGTGTLSVFTNEKGGIID 127 (404)
T ss_pred EECCEehhhhcCccHHHHHHHHHhCeEEEECCCcEEEEEE--CCCHHHHHhhhcccccCCCCCCCEEEeEEECCCCeEEE
Confidence 345689999997 589999999999999999999999999 99999999999999998 88999999999999999999
Q ss_pred EEEEEEecCCeEEEEcCCcchHHHHHHHHhhCCCC----CceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcc
Q psy6089 147 DCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTK----HYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFS 221 (313)
Q Consensus 147 d~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~~~----~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~ 221 (313)
|++|+|+++|+|+|+++++..+.+++||++++... .+|++ ++++++++|+|+||+|+++|+++++.|+ .+||+.
T Consensus 128 D~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~-~~~~~~~~l~lqGP~s~~~l~~l~~~~l~~~~f~~ 206 (404)
T PLN02319 128 DTVITKVTDDHIYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSW-HVHDERSLLALQGPLAAPVLQHLTKEDLSKMYFGD 206 (404)
T ss_pred EEEEEEEcCCEEEEEECCccHHHHHHHHHhhhhhccCCCCcEEE-EEcCCeEEEEEECccHHHHHHHhcccchhhCCCce
Confidence 99999998899999999999999999999987531 35766 4688999999999999999999988888 899999
Q ss_pred eEEEEECCcccEEEEecCCCCCceEEEEeccccHHHHHHHHHhcCccCCceecCccchhhhhhcccCCcccCCCCCCCCc
Q psy6089 222 YKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTP 301 (313)
Q Consensus 222 ~~~~~i~~~~~v~~~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~g~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P 301 (313)
++.+++++ .+++++|++|+||+||||++|.+++.++|++|+++| ++|+.++|..|+++||||+|+|.||+|++++++|
T Consensus 207 ~~~~~i~g-~~v~i~R~g~tGE~G~El~~p~~~a~~l~~~L~~aG-~~g~~~~G~~a~d~lRiEaG~p~~g~dl~~~~~P 284 (404)
T PLN02319 207 FRITDING-ADCFLTRTGYTGEDGFEISVPSEHAVDLAKALLEKS-EGKVRLTGLGARDSLRLEAGLCLYGNDLEEHITP 284 (404)
T ss_pred EEEEEECC-eeEEEEEeeecCCCeEEEEEcHHHHHHHHHHHHhCc-ccCcEecchhHhhHHHhhcCccccCCcCCCCCCH
Confidence 99999988 569999999999999999999999999999999999 6889999999999999999999999999999999
Q ss_pred ccccCCcccc
Q psy6089 302 FESGSAYRVK 311 (313)
Q Consensus 302 ~Eagl~~~v~ 311 (313)
+|+||+|+|+
T Consensus 285 ~EagL~~~v~ 294 (404)
T PLN02319 285 VEAGLAWTIG 294 (404)
T ss_pred HHCCccceec
Confidence 9999999986
No 4
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed
Probab=100.00 E-value=2e-56 Score=424.90 Aligned_cols=255 Identities=20% Similarity=0.299 Sum_probs=227.7
Q ss_pred cccccccCCHHHHHhhhhcccccccccCCCCCCCCCCccCCccccccHHHHHHHHHcCeEEEeCCCceEEEEEccCchHH
Q psy6089 35 QRFLDLHNNRQYLQQRIREVVGSTYRVGDPRPEMPPGTFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLV 114 (313)
Q Consensus 35 ~Rf~~~~~~~~~~~~r~~e~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~E~~a~r~~~~l~Dls~~~~i~v~~~G~dA~ 114 (313)
-|.+|++..|.-+.+|+.. ..++|.+|.||+.+.+||+|+|++|+|||+|+|++|+|+ |+||.
T Consensus 11 ~~~t~l~~~h~~~ga~~~~---------------~~~g~~~p~~~~~~~~E~~A~R~~~gl~D~S~~~~i~V~--G~Da~ 73 (368)
T PRK12486 11 LRRTPFSDGVEAAGVKAYT---------------VYNHMLLPTVFESVEDDYAHLKEHVQVWDVAVERQVEIR--GPDAA 73 (368)
T ss_pred ccCCCCHHHHHHCCCeEEe---------------cCCCeECccccCCHHHHHHHHHhcceEEEcCCcEEEEEE--CCCHH
Confidence 3668888776655555332 234789999999999999999999999999999999999 99999
Q ss_pred HHHhhhcccCcc-cCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchHHHHHHHHhhCCCCCceEEEEecCCe
Q psy6089 115 DWLQQLCSNDVN-IPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKY 193 (313)
Q Consensus 115 ~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~ 193 (313)
+|||+++|||++ +++|+++||++||++|+|++|++|+|+++|+|+|+++.+ ....||++++.. .++.+++.++++
T Consensus 74 ~fL~~l~t~di~~l~~G~~~yt~~ln~~G~i~~D~~v~r~~ed~~~l~~~~~---~~~~~l~~~~~~-~~~~v~~~~~~~ 149 (368)
T PRK12486 74 RLVQMLTPRDLRGMKPGQCYYVPIVDETGGMLNDPVALKLAEDRWWISIADS---DLLLWVKGLANG-RKLDVLVVEPDV 149 (368)
T ss_pred HHHHHhcccccccCCCCcEEEEEEEcCCCcEEeeEEEEEecCCEEEEEEcCc---cHHHHHHHhhhh-cCCcEEEecCCe
Confidence 999999999998 789999999999999999999999999999999988654 457888887653 345666667889
Q ss_pred EEEEEeCccHHHHHhhccccCC-CCCCcceEEEEECCcccEEEEecCCCCCceEEEEeccc-cHHHHHHHHHhcCccCCc
Q psy6089 194 TVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSE-YALHVYQKIMTLGKDYNA 271 (313)
Q Consensus 194 ~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G~el~~~~~-~a~~l~~~L~~ag~~~g~ 271 (313)
++++||||+|+++|+++++.++ .+||++++.+++++ .+++++|++|+||+||||+++.+ .+.++|++|+++|+++|+
T Consensus 150 ~~l~lqGP~s~~il~~l~~~~l~~~~~~~~~~~~i~g-~~~~i~R~g~tGE~G~Ei~~~~~~~a~~l~~~L~~aG~~~~~ 228 (368)
T PRK12486 150 SPLAVQGPKADALMARVFGEAIRDLRFFRFGYFDFEG-TDLVIARSGYSKQGGFEIYVEGSDLGMPLWDALFEAGKDLNV 228 (368)
T ss_pred EEEEeECcCHHHHHHHHhcCChhhCCCceeEEEEECC-cEEEEEeccccCCceEEEEeccHHHHHHHHHHHHhcccccCc
Confidence 9999999999999999988888 89999999999998 67999999999999999999986 699999999999999999
Q ss_pred eecCccchhhhhhcccCCcccCCCCCCCCcccccCCccccCC
Q psy6089 272 RDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKLD 313 (313)
Q Consensus 272 ~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eagl~~~v~~~ 313 (313)
.++|..++ +|||+|+|.||+|++++++|+|+||+|+|+|+
T Consensus 229 ~~~~~~~~--~RlE~G~~~~g~D~~~~~~P~EagL~~~v~~~ 268 (368)
T PRK12486 229 RAGCPNLI--ERIEGGLLSYGNDMTRDNTPHECGLGRFCNTQ 268 (368)
T ss_pred ccccChhH--hHHhcccccccccCCCCCChHHCCCceEEcCC
Confidence 99987655 69999999999999999999999999999875
No 5
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=100.00 E-value=4.1e-54 Score=453.26 Aligned_cols=242 Identities=25% Similarity=0.431 Sum_probs=226.0
Q ss_pred CCCccCCcccc--------ccHHHHHHHHHcCeEEEeCCCceEEEEEccCchHHHHHhhhcccCcc-cCCCCEEEeeeec
Q psy6089 69 PPGTFFKPKFF--------DFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVN-IPVGGISHTGMQN 139 (313)
Q Consensus 69 ~~~~~~~p~~~--------~~~~~E~~a~r~~~~l~Dls~~~~i~v~~~G~dA~~fL~~l~t~di~-l~~G~~~~t~~ln 139 (313)
+.++|++|.|| +.+.+||+|+|++|+|+|+|++++|+|+ |+||.+|||+++|||++ +++|+++||+|||
T Consensus 614 ~~~gw~~p~~y~~~~~~~~~~~~~E~~avR~~vgl~D~S~~g~i~V~--G~DA~~fL~~~~tndi~~l~~G~~~yt~~l~ 691 (985)
T TIGR01372 614 DVGQWKRPWYYPRRGEDMDEAVARECKAVRESVGLFDASTLGKIEVQ--GPDAAEFLNRVYTNAFTKLKVGKARYGLMLR 691 (985)
T ss_pred eeCCccchhhhcCCCCcccchHHHHHHHHHhceEEEECCCcEEEEEE--CcCHHHHHhhhcccccCcCCCCCEEEeEEEC
Confidence 34455555555 4789999999999999999999999999 99999999999999998 8899999999999
Q ss_pred CCCeeEEEEEEEEecCCeEEEEcCCcchHHHHHHHHhhCCC---CCceEEEEecCCeEEEEEeCccHHHHHhhccc-cCC
Q psy6089 140 ERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPT---KHYITLSDVTSKYTVINVVGPKAKQLLSELCD-EDI 215 (313)
Q Consensus 140 ~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~~---~~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~-~dl 215 (313)
++|+|++|++|+|+++|+|+|+++++..+.+++||++++.. +.+|+|+|+|+++++|+|+||+|+++|+++++ .|+
T Consensus 692 ~~G~i~dD~~v~r~~ed~~~l~~~~~~~~~~~~~L~~~~~~~~~~~~V~i~d~t~~~a~i~l~GP~s~~vl~~l~~~~dl 771 (985)
T TIGR01372 692 EDGMVFDDGVTSRLAEDRFLMTTTTGGAARVLQHLEEWLQTEWPELDVYLTSVTDQWATLAVSGPKARDLLAELVDGLDL 771 (985)
T ss_pred CCCeEEEeEEEEEEeCCEEEEEeCCcCHHHHHHHHHHhhhhccCCCCEEEEECCCCEEEEEEECHhHHHHHHHhcCcccC
Confidence 99999999999999999999999999999999999998752 35899999999999999999999999999986 465
Q ss_pred ---CCCCcceEEEEECCcccEEEEecCCCCCceEEEEeccccHHHHHHHHHhcCccCCceecCccchhhhhhcccCCccc
Q psy6089 216 ---NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWA 292 (313)
Q Consensus 216 ---~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~g~~~~G~~a~~~lRiE~G~~~~g 292 (313)
.+||+.++++++++ .+++++|++|+||+||||++|.+++.++|++|+++|++||++|+|..||++||||+|+|.||
T Consensus 772 ~~~~~~~~~~~~~~~~g-~~~~i~R~~~tGE~GyEi~~p~~~~~~l~~~L~~aG~~~g~~p~G~~a~~~lRiE~G~~~~g 850 (985)
T TIGR01372 772 SNEAFPFMAIKEGTLAG-VPARLFRISFSGELAFEVNVPADYGEAVWEALMEAGQPFGITPYGTETMHVLRAEKGFIIVG 850 (985)
T ss_pred ccccCCCceeEEEEECC-cEEEEEeccccCCceEEEEecHHHHHHHHHHHHhcchhcCceEcchhhhhhhhhhcCccccC
Confidence 68999999999988 56999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCCccccCC
Q psy6089 293 EDLNSVTTPFESGSAYRVKLD 313 (313)
Q Consensus 293 ~dl~~~~~P~Eagl~~~v~~~ 313 (313)
+|++++++|+|+||+|+|+|+
T Consensus 851 ~d~~~~~tP~E~gl~~~V~~~ 871 (985)
T TIGR01372 851 QDTDGTVTPADLGMGWMVSKK 871 (985)
T ss_pred cccCCCCCHHHCCCcccccCC
Confidence 999999999999999999985
No 6
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional
Probab=100.00 E-value=1.2e-53 Score=406.82 Aligned_cols=250 Identities=18% Similarity=0.274 Sum_probs=226.8
Q ss_pred ccccccCCHHHHHhhhhcccccccccCCCCCCCCCCccCCccccc-cHHHHHHHHHcCeEEEeCCCceEEEEEccCchHH
Q psy6089 36 RFLDLHNNRQYLQQRIREVVGSTYRVGDPRPEMPPGTFFKPKFFD-FMEEEYRACFEGVGIIDMSSFSKIKITCSDESLV 114 (313)
Q Consensus 36 Rf~~~~~~~~~~~~r~~e~~~~~~~~~~p~~~~~~~~~~~p~~~~-~~~~E~~a~r~~~~l~Dls~~~~i~v~~~G~dA~ 114 (313)
|-+|++..+.-..+++.+ .++|++|.||+ ++.+||+|+|++|+++|+|++++|+|+ |+||.
T Consensus 10 r~~pl~~~~~~~ga~~~~----------------~~g~e~p~~f~~~~~~E~~avr~~a~l~Dls~~~~i~v~--G~Da~ 71 (370)
T PRK13579 10 KTLPLHALHLAAGARMVP----------------FAGYDMPVQYPAGVLKEHLHTRAHAGLFDVSHMGQIEVS--GKDAA 71 (370)
T ss_pred ccCccHHHHHHCCCEEEE----------------ECCeecccccCccHHHHHHHHHhccEEEECCCcEEEEEE--CCCHH
Confidence 347877555444444433 34688999997 699999999999999999999999999 99999
Q ss_pred HHHhhhcccCcc-cCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchHHHHHHHHhhCCCCCceEEEEecCCe
Q psy6089 115 DWLQQLCSNDVN-IPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKY 193 (313)
Q Consensus 115 ~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~ 193 (313)
+|||+++||||+ +++|+++||++||++|+|++|++|+|++ |+|+|+++++..+.+++||++++.. +|+|+|++ ++
T Consensus 72 ~fLq~~~tndi~~l~~g~~~y~~~ln~~G~i~~d~~v~r~~-d~~~L~~~~~~~~~~~~~l~~~~~~--~V~i~d~~-~~ 147 (370)
T PRK13579 72 AALERLVPVDILALKEGRQRYTFFTNEQGGILDDLMVTNLG-DHLFLVVNAACKDADIAHLREHLSD--ECEVNPLD-DR 147 (370)
T ss_pred HHHHHhccccCCCCCCCCEEEeEEECCCCeEEEeEEEEEEC-CeEEEEECcCCHHHHHHHHHHhCCC--CcEEEECC-Cc
Confidence 999999999998 8899999999999999999999999995 7899999999999999999999763 89999987 68
Q ss_pred EEEEEeCccHHHHHhhccccCC-CCCCcceEEEEECCcccEEEEecCCCCCceEEEEeccccHHHHHHHHHhcCccCCce
Q psy6089 194 TVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDYNAR 272 (313)
Q Consensus 194 ~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~g~~ 272 (313)
++++|+||+|+++|++++ .++ .+||++++.+.+++ .++++.|++|+||+||||++|.+.+..+|++|+++ +|+.
T Consensus 148 ~~l~l~GP~a~~il~~l~-~~~~~~~~~~~~~~~~~g-~~~~i~R~~~~Ge~G~el~~~~~~~~~l~~~l~~~---~g~~ 222 (370)
T PRK13579 148 ALLALQGPEAEAVLADLG-PPVAALRFMDGFEPRLHG-VDCFVSRSGYTGEDGFEISVPADAAEALAEALLAD---PRVE 222 (370)
T ss_pred EEEEEECcCHHHHHHHhh-hhhhcCCCceEEEEEECC-eEEEEEEeeecCCCEEEEEEcHHHHHHHHHHHHcc---CCce
Confidence 999999999999999987 456 79999999999988 46899999999999999999999999999999987 3799
Q ss_pred ecCccchhhhhhcccCCcccCCCCCCCCcccccCCccccC
Q psy6089 273 DVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKL 312 (313)
Q Consensus 273 ~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eagl~~~v~~ 312 (313)
++|..+|+++|||+|+|.||+|++++++|+|+||+|+|++
T Consensus 223 ~~G~~a~~~lRiE~G~p~~g~dl~~~~~P~E~gL~~~v~~ 262 (370)
T PRK13579 223 PIGLGARDSLRLEAGLCLYGHDIDTTTTPVEAALEWAIQK 262 (370)
T ss_pred EechhhhhHHHhhcCCcccCCcCCCCCCHHHCCccceecC
Confidence 9999999999999999999999999999999999999975
No 7
>TIGR00528 gcvT glycine cleavage system T protein. Eukaryotic forms are mitochondrial and have an N-terminal transit peptide.
Probab=100.00 E-value=8.6e-53 Score=399.88 Aligned_cols=236 Identities=21% Similarity=0.372 Sum_probs=220.6
Q ss_pred CCccCCccccccHHHHHHHHHcCeEEEeCCCceEEEEEccCchHHHHHhhhcccCcc-cCCCCEEEeeeecCCCeeEEEE
Q psy6089 70 PGTFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVN-IPVGGISHTGMQNERGGYENDC 148 (313)
Q Consensus 70 ~~~~~~p~~~~~~~~E~~a~r~~~~l~Dls~~~~i~v~~~G~dA~~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d~ 148 (313)
.++|++|.||+.+.+||+|+|++|+++|+|++++|+|+ |+||.+|||+++|||+. +++|++.||++||++|+|++|+
T Consensus 20 ~~g~~~p~~y~~~~~E~~a~r~~~~l~dls~~~~i~vs--G~Da~~fLq~~~t~di~~l~~g~~~~~~~l~~~G~i~~d~ 97 (361)
T TIGR00528 20 FGGWEMPVQYGSQIDEHHAVRTDAGLFDVSHMGIVDLS--GSRSLEFLQRLLPNDVAALTPGKAQYSVLLNPQGGVVDDL 97 (361)
T ss_pred ECCchhhhccCChHHHHHHHHhhCcEEECCCcEEEEEE--CCCHHHHHhHhcccccccCCCCCEEEEEEECCCCeEEEEE
Confidence 46799999999999999999999999999999999999 99999999999999998 8899999999999999999999
Q ss_pred EEEEecCCeEEEEcCCcchHHHHHHHHhhCCCCCceEEEEecCCeEEEEEeCccHHHHHhhccccCC-C-CCCcceEEEE
Q psy6089 149 ILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-N-LHPFSYKRTD 226 (313)
Q Consensus 149 ~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~-~~~~~~~~~~ 226 (313)
+|+|+++|+|+|+++++..+.++.||++++. .+|+|+|+|+++++++|+||+|+++|+++++.++ . .||...+..+
T Consensus 98 ~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~~--~~v~i~~~t~~~~~l~l~GP~a~~~l~~l~~~~~~~~~~~~~~~~~~ 175 (361)
T TIGR00528 98 IIYYFGEDRFRLVVNAATREKDLSWITEHAE--PFGIEDTQSDDISLLAVQGPKAATILNPLQDQAVEGLKPFFFVQEAD 175 (361)
T ss_pred EEEEecCCEEEEEECCccHHHHHHHHHHhCc--CCcEEEECcCCEEEEEeECcCHHHHHHHhcccchhhcccccceeEEE
Confidence 9999988899999999999999999999965 4799999999999999999999999999987766 3 4455566788
Q ss_pred ECCcccEEEEecCCCCCceEEEEeccccHHHHHHHHHhcCccCCceecCccchhhhhhcccCCcccCCCCCCCCcccccC
Q psy6089 227 IGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGS 306 (313)
Q Consensus 227 i~~~~~v~~~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~g~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eagl 306 (313)
+.+ .+++++|.+++||+||||++|.+.+.++|++|+++| |++++|..+|+++|||+|+|.|+.|++++++|+|+||
T Consensus 176 ~~g-~~~~i~r~~~~ge~g~el~~~~~~~~~l~~~l~~~g---g~~~~g~~a~~~lRie~G~p~~~~d~~~~~~P~E~gl 251 (361)
T TIGR00528 176 FSG-RKAFIARTGYTGEDGYEIALPNEKAADFWRALVEAY---GVKPCGLGARDTLRLEAGMNLYGQELDETITPLEAGL 251 (361)
T ss_pred ECC-ceEEEEEcceeCCCeEEEEecHHHHHHHHHHHHhcC---CcEEcchhhhhhhHhhcCCCccCccCCCCCChHHCCc
Confidence 887 468899999999999999999999999999999987 7999999999999999999999999999999999999
Q ss_pred CccccCC
Q psy6089 307 AYRVKLD 313 (313)
Q Consensus 307 ~~~v~~~ 313 (313)
+|+|+++
T Consensus 252 ~~~v~~~ 258 (361)
T TIGR00528 252 GWTIAWE 258 (361)
T ss_pred ccEEecC
Confidence 9999873
No 8
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed
Probab=100.00 E-value=5.4e-51 Score=387.39 Aligned_cols=237 Identities=28% Similarity=0.504 Sum_probs=223.2
Q ss_pred CCCccCCccccccHHHHHHHHHcCeEEEeCCCceEEEEEccCchHHHHHhhhcccCcc-cCCCCEEEeeeecCCCeeEEE
Q psy6089 69 PPGTFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVN-IPVGGISHTGMQNERGGYEND 147 (313)
Q Consensus 69 ~~~~~~~p~~~~~~~~E~~a~r~~~~l~Dls~~~~i~v~~~G~dA~~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d 147 (313)
..++|++|.||+.+.+||+|+|++|+++|+|++++|+|+ |+||.+|||+++||||+ +++|+++||++||++|+|++|
T Consensus 20 ~~~g~~~p~~~~~~~~E~~a~r~~~~l~dls~~~~i~v~--G~Da~~fLq~~~t~dv~~l~~g~~~~~~~l~~~G~i~~d 97 (359)
T PRK00389 20 DFGGWEMPVQYGSIIEEHHAVRTDAGLFDVSHMGEVDVT--GPDALAFLQYLLANDVSKLKPGKAQYTCMLNEDGGVIDD 97 (359)
T ss_pred eECCeecchhccCHHHHHHHHHhCceEEECCCcEEEEEE--CCCHHHHHhhhcccccccCCCCcEEEeEEECCCCCEEEe
Confidence 356899999999999999999999999999999999999 99999999999999998 889999999999999999999
Q ss_pred EEEEEecCCeEEEEcCCcchHHHHHHHHhhCCCCCceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CC-CCcceEEE
Q psy6089 148 CILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NL-HPFSYKRT 225 (313)
Q Consensus 148 ~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~-~~~~~~~~ 225 (313)
++|+|+++++|+|+++++..+.+++||++|+.. .+|+|+|+++++++++|+||+|+++|+++++.++ .+ ||..+...
T Consensus 98 ~~v~r~~~~~~ll~~~~~~~~~~~~~L~~~~~~-~~V~i~d~~~~~~~l~l~GP~a~~~l~~~~~~~l~~~~~~~~~~~~ 176 (359)
T PRK00389 98 LIVYKLSEDEYLLVVNAANREKDLAWIKSHAAG-FGVEVTDRSDDLAMIAVQGPKAREKLQKLTDADLSELKPFFGAQGA 176 (359)
T ss_pred EEEEEecCCEEEEEECcccHHHHHHHHHhhCcc-CCEEEEECCCCEEEEEEECccHHHHHHHhcccchhhccccceeeEE
Confidence 999999888999999999999999999999873 6899999999999999999999999999988777 66 77777777
Q ss_pred EECCcccEEEEecCCCCCceEEEEeccccHHHHHHHHHhcCccCCceecCccchhhhhhcccCCcccCCCCCCCCccccc
Q psy6089 226 DIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESG 305 (313)
Q Consensus 226 ~i~~~~~v~~~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~g~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eag 305 (313)
.+++ .++++.|.+++||+||||++|.+.+..+|+.|+++ |+.++|..+|+++|||+|+|.|+.|++++++|+|+|
T Consensus 177 ~~~~-~~~~i~r~~~~ge~g~el~~~~~~~~~l~~~L~~a----g~~~~g~~a~~~lrie~G~p~~~~d~~~~~~P~e~g 251 (359)
T PRK00389 177 EVGG-GDVLVARTGYTGEDGFEIYLPAEDAEALWDALLEA----GVKPCGLGARDTLRLEAGMPLYGQDMDETITPLEAG 251 (359)
T ss_pred EECC-eEEEEEeceecCCCeEEEEEchHHHHHHHHHHHHc----CCeecchhHHhHHHHhcCCCccCccCCCCCChHHcC
Confidence 7776 45889999999999999999999999999999987 699999999999999999999999999999999999
Q ss_pred CCccccCC
Q psy6089 306 SAYRVKLD 313 (313)
Q Consensus 306 l~~~v~~~ 313 (313)
|+|.|+|+
T Consensus 252 l~~~v~~~ 259 (359)
T PRK00389 252 LGWTVKLE 259 (359)
T ss_pred cccEecCC
Confidence 99999984
No 9
>KOG2770|consensus
Probab=100.00 E-value=8.5e-50 Score=359.69 Aligned_cols=254 Identities=20% Similarity=0.309 Sum_probs=229.9
Q ss_pred ccccCCHHHHHhhhhcccccccccCCCCCCCCCCccCCccccccHHHHHHHHHcCeEEEeCCCceEEEEEccCchHHHHH
Q psy6089 38 LDLHNNRQYLQQRIREVVGSTYRVGDPRPEMPPGTFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWL 117 (313)
Q Consensus 38 ~~~~~~~~~~~~r~~e~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~E~~a~r~~~~l~Dls~~~~i~v~~~G~dA~~fL 117 (313)
+|++..|..+..|+.++.|+.+++.|.. -.+.++|..+|++++|||+|||.+++|+ |+|+.+||
T Consensus 28 T~l~d~H~~~ggk~V~fag~smpvqy~d--------------~s~~dshl~tr~n~~lfDVSHmlq~~v~--G~d~v~fL 91 (401)
T KOG2770|consen 28 TPLYDFHVKLGGKMVPFAGYSMPVQYKD--------------QSIIDSHLHTRENVSLFDVSHMLQSRVS--GKDRVAFL 91 (401)
T ss_pred CCChhhHhhcCCEEecccccccceeecc--------------ccchhhhhhhhhcceEEeehhheeeeec--ccchhHHh
Confidence 7888888888888888887555444442 1489999999999999999999999999 99999999
Q ss_pred hhhcccCcc-cCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchHHHHHHHHhhCCC----CCceEEEEecCC
Q psy6089 118 QQLCSNDVN-IPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPT----KHYITLSDVTSK 192 (313)
Q Consensus 118 ~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~~----~~~V~i~d~t~~ 192 (313)
++++|.|+. +++|+.+.|+|+||+|+++||.+|.+..++++++++|++.+++++..+++++.. ..+|+++-+. .
T Consensus 92 es~ttad~~~L~~g~GtlsvFtne~ggiiDd~ii~k~~~~~ly~VsnAgC~ekd~~~~k~~~~a~ks~gkDv~~~~~~-~ 170 (401)
T KOG2770|consen 92 ESLTTADFEGLPEGSGTLSVFTNETGGIIDDLIITKVDENELYIVSNAGCQEKDEALLKDHFFAWKSKGKDVSWETLD-G 170 (401)
T ss_pred hhccccchhccCCCCceeEEEEcCCCceeeeeEEEeecCCEEEEEeccchHHHHHHHHHHHHHhhhhccceeeEEEec-c
Confidence 999999998 999999999999999999999999999999999999999999999999887653 2345554444 6
Q ss_pred eEEEEEeCccHHHHHhhccc--cCC-CCCCcceEEEEECCcccEEEEecCCCCCceEEEEeccccHHHHHHHHHhcCccC
Q psy6089 193 YTVINVVGPKAKQLLSELCD--EDI-NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDY 269 (313)
Q Consensus 193 ~~~l~l~GP~a~~vL~~l~~--~dl-~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~ 269 (313)
.+++++|||.+..+|++++. .|| .+||++.....+.|.+.|++.|.+|+||+|||+.+|.+.|..+|++|++..
T Consensus 171 r~l~A~Qgp~~akvlq~l~~k~~DL~~l~fg~~~~~~~~G~~~~~vtr~gytgEDGfeisv~~~~Av~la~~LLa~~--- 247 (401)
T KOG2770|consen 171 RSLLALQGPEAAKVLQKLLSKLGDLSKLPFGQSQVYDFKGGPGCRVTRGGYTGEDGFEISVPPEGAVDLAETLLANP--- 247 (401)
T ss_pred cchhhhcChHHHHHHHHhhccccchhcccccceEEEEecCCCceEEeccccccCCceEEecCCchhHHHHHHHhhCC---
Confidence 68999999999999999998 788 999999999999886779999999999999999999999999999999875
Q ss_pred CceecCccchhhhhhcccCCcccCCCCCCCCcccccCCcccc
Q psy6089 270 NARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVK 311 (313)
Q Consensus 270 g~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eagl~~~v~ 311 (313)
+++|+|+.|||+||||+|.|+||+||++++||.|+||.|.|.
T Consensus 248 ~vkp~Gl~ArDsLRLeaGKOGyg~did~~~tpvEa~L~W~i~ 289 (401)
T KOG2770|consen 248 VVKPAGLGARDSLRLEAGLCLYGSDIDEETTPVEAGLSWVIG 289 (401)
T ss_pred ceeecccchhhhhhhhcCCcccCcccccccChhhheeeeeee
Confidence 699999999999999999999999999999999999999773
No 10
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase 2.1.2.10 from EC that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein ; GO: 0004047 aminomethyltransferase activity, 0006546 glycine catabolic process, 0005737 cytoplasm; PDB: 3TFJ_B 3TFI_B 3TFH_A 1YX2_B 3GIR_A 3A8K_D 3A8I_B 3A8J_C 1VLO_A 1WOO_A ....
Probab=100.00 E-value=1.7e-47 Score=337.38 Aligned_cols=209 Identities=29% Similarity=0.493 Sum_probs=190.5
Q ss_pred EEeCCCceEEEEEccCchHHHHHhhhcccCcc-cCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchHHHHHH
Q psy6089 95 IIDMSSFSKIKITCSDESLVDWLQQLCSNDVN-IPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEW 173 (313)
Q Consensus 95 l~Dls~~~~i~v~~~G~dA~~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~ 173 (313)
|||+|++++|+|+ |+||.+|||+++||||+ +++|+++||++||+||+|++|++|+|.++++|+|+++++..+.+++|
T Consensus 1 l~d~s~~~~i~v~--G~Da~~fLq~~~t~di~~l~~g~~~~~~~l~~~G~v~~d~~v~~~~~~~~~l~~~~~~~~~~~~~ 78 (211)
T PF01571_consen 1 LFDLSHRGVIRVS--GPDAAKFLQGLLTNDISKLPPGQARYTLFLNPKGRVLDDFFVYRLGDDEFLLIVPASAADALLEW 78 (211)
T ss_dssp EEE-TTSEEEEEE--STTHHHHHHHHBSS-GTTS-TTBEEEEEEE-TTS-EEEEEEEEEEETTEEEEEECCTCHHHHHHH
T ss_pred CCCCCCcEEEEEE--CCCHHHHHHHhhhhhHHhhCCCceeEEEEECCCCcEEEEEEEEeecCceEEEEecchhHHHHHHH
Confidence 7999999999999 99999999999999998 89999999999999999999999999998889999999999999999
Q ss_pred HHhhCCCCCceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEECCcccEEEEecCCCCCceEEEEecc
Q psy6089 174 MKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPS 252 (313)
Q Consensus 174 L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G~el~~~~ 252 (313)
|++|+.. .+|+|+++++++++++|+||+|.++|+++.+.+. .+++++++.+ +.+ ++++.|.+++||+||||++|.
T Consensus 79 L~~~~~~-~~v~i~~~~~~~~~~~l~Gp~a~~~l~~~~~~~~~~~~~~~~~~~-~~~--~~~~~r~~~~g~~g~~l~~~~ 154 (211)
T PF01571_consen 79 LKKYILR-SDVEIEDVSDDLAVLGLQGPKAAEVLQKLFDEDIEPLPFFSSREV-GDG--PVLVARTGRTGELGYELIVPA 154 (211)
T ss_dssp HHHHHHH-SS-EEEEETTTEEEEEEESTTHHHHHHHHSSSSGTTSHTTBEEEE-ETT--EEEEESCBSSSSSEEEEEEEG
T ss_pred HHHhccc-cCcEEEEcccceeEEEEEcchhhHHHHHhcccccccccccceeee-cCc--eEEEEecccCCCCCEEEEecc
Confidence 9999874 7999999999999999999999999999997766 8999999888 665 599999999999999999999
Q ss_pred ccHHHHHHHHHhcCccCCceecCccchhhhhhcccCCcccCCCCCCCCcccccCCcc
Q psy6089 253 EYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYR 309 (313)
Q Consensus 253 ~~a~~l~~~L~~ag~~~g~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eagl~~~ 309 (313)
+.+..+|++|+++|+++|++++|..+|+++|||+|+|.+++|++++++|+|+||+|+
T Consensus 155 ~~~~~~~~~l~~~g~~~g~~~~g~~~~~~lRie~G~p~~~~d~~~~~~P~E~~l~w~ 211 (211)
T PF01571_consen 155 EEAEALWDALLEAGKDFGVRPAGLEAWEALRIEAGIPLYGQDLDEEFLPQEANLDWA 211 (211)
T ss_dssp GGHHHHHHHHHHHHGGGTEEEEEHHHHHHHHHHTT---TTTSSCTTS-TTTTTGGGG
T ss_pred chhHHHHHHHHHHHhccCceeccHHHHHHHHHhcCCcccccccCCCCCHHHcCCCcC
Confidence 999999999999999999999999999999999999999999999999999999985
No 11
>PRK09559 putative global regulator; Reviewed
Probab=100.00 E-value=2.6e-35 Score=276.30 Aligned_cols=202 Identities=15% Similarity=0.147 Sum_probs=173.7
Q ss_pred eEEEeCCCceEEEEEccCchHHHHHhhhcccCcc-cCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchHHHH
Q psy6089 93 VGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVN-IPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVF 171 (313)
Q Consensus 93 ~~l~Dls~~~~i~v~~~G~dA~~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~ 171 (313)
..++|+|++++|+|+ |+||.+|||+++||||. +++|+++|+++||+||||++|++|+|.+ ++|+|+++++..+.++
T Consensus 19 ~~l~~L~~~g~i~v~--G~Da~~FLqg~~T~Dv~~L~~g~~~y~~~~n~kGril~d~~v~~~~-~~~~l~~~~~~~~~~~ 95 (327)
T PRK09559 19 LTLISLDDWALATIT--GADSEKYLQGQVTADVSQLTEDQHLLAAHCDAKGKMWSNLRLFRRG-DGFAWIERRSVRENQL 95 (327)
T ss_pred eEEEcCccceEEEEE--CCcHHHHhcccccccccccCCCCeeEEEEECCCCcEEEEEEEEEeC-CeEEEEeChhhhHHHH
Confidence 789999999999999 99999999999999998 8999999999999999999999999997 4699999999999999
Q ss_pred HHHHhhCCCCCceEEEEecCCeEEEEEeCccHHHHHhhcccc-CC-CCCCcceEEEEECCcccEEEEecCCCCCceEEEE
Q psy6089 172 EWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDE-DI-NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLY 249 (313)
Q Consensus 172 ~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~-dl-~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G~el~ 249 (313)
+||++|+.. .+|+|++ +++++.++++||+|.+++++++.. +. ..++. ... .+.+.|... .+.||||+
T Consensus 96 ~~L~ky~~~-~kV~i~~-~~~~~~i~l~Gp~a~~~l~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~-~~~g~ei~ 164 (327)
T PRK09559 96 TELKKYAVF-SKVTIAP-DDERVLLGVAGFQARAALANLFSELPDAEKPVV-----QEG---ATTLLWFEH-PAERFLLV 164 (327)
T ss_pred HHHhhcccc-eEEEEEe-CCcEEEEEEECccHHHHHHHhcccCCCcCcceE-----ecC---CeEEEEecC-CCCeEEEE
Confidence 999999874 6999986 677999999999999999887642 21 22221 111 133444443 56899999
Q ss_pred eccccHHHHHHHHHhcCccCCceecCccchhhhhhcccCCcccCCCCCCCCcccccCC--ccccCC
Q psy6089 250 IPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSA--YRVKLD 313 (313)
Q Consensus 250 ~~~~~a~~l~~~L~~ag~~~g~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eagl~--~~v~~~ 313 (313)
++.+.+..+|+.|.+. ..+++...|+++|||+|+|.++.|+++.++|+|+||+ +.|+|+
T Consensus 165 ~~~~~~~~l~~~L~~~-----~~~~~~~~w~~lrIeaG~p~~g~e~~e~~~Pqe~nL~~l~~Vsf~ 225 (327)
T PRK09559 165 TDEATANMLTEKLRGE-----AQLNNSQQWLALDIEAGFPVIDAANSGQFIPQATNLQALGGISFK 225 (327)
T ss_pred echHHHHHHHHHhhhc-----CccCCHHHHHHHHHHcCCcccccccccccCchhhChhhcCceeec
Confidence 9999999999999864 3467788899999999999999999999999999999 489985
No 12
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only]
Probab=99.91 E-value=7.6e-24 Score=195.20 Aligned_cols=196 Identities=16% Similarity=0.163 Sum_probs=156.3
Q ss_pred HHHHHcCeEEEeCCCceEEEEEccCchHHHHHhhhcccCcc-cCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCC
Q psy6089 86 YRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVN-IPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPT 164 (313)
Q Consensus 86 ~~a~r~~~~l~Dls~~~~i~v~~~G~dA~~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~ 164 (313)
+........++++++++.|+|+ |+|+.+|||+|+||||. +++|+.+++.+||+||||++++.++|.+ +.|++.+++
T Consensus 7 ~~~~~~~~~l~~l~~~~li~V~--G~D~~kfLq~q~T~dv~~l~~g~~~~~a~l~~qGrv~~~~~~~~~~-d~~~l~~~~ 83 (305)
T COG0354 7 SPSAETPLTLVLLSDRALIRVS--GADAEKFLQGQLTNDVSALAEGQSTLAALLTPQGRVLFDFRLYRRG-DGLYLDTDK 83 (305)
T ss_pred ccccccccEEEecCCceeEEEE--CCCHHHHHhHHHHHhHhhcccCceeeeeEECCCceEEEEEEEEEeC-CeEEEEcch
Confidence 3345567889999999999999 99999999999999998 8999999999999999999999999998 789999999
Q ss_pred cchHHHHHHHHhhCCCCCceEEEEecCCeEEEEEeCccHHHHHhhccccCCCCCCcceEEEEECCcccEEEEecCCCCCc
Q psy6089 165 SQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDINLHPFSYKRTDIGYASDVKLMGFTHTGEP 244 (313)
Q Consensus 165 ~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~ 244 (313)
+..+..+.+|++|+.. .+|+|.+.+ ..++++.|+++.+.+...... +|..... . .
T Consensus 84 ~~~~~~l~~L~kY~~~-skv~i~~~~--~~~i~v~~~~~~~~~~~~~~~---~~~~~~~-----------------~--~ 138 (305)
T COG0354 84 SVLEALLKRLKKYALR-SKVTIAPSD--LVLIGVAGEEAAEALAVDFPA---LPKQWRA-----------------A--G 138 (305)
T ss_pred hhcHHHHHHHHhceec-ccceEecCC--ceeEEEeeccccchhhccccc---ccccccc-----------------c--c
Confidence 9999999999999884 799999866 799999999998776654322 2221110 1 1
Q ss_pred eEEEEeccccHHHHHHHHHhcCccCCceecCccchhhhhhcccCCcccCCCCCCCCcccccCCc--cccCC
Q psy6089 245 GYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAY--RVKLD 313 (313)
Q Consensus 245 G~el~~~~~~a~~l~~~L~~ag~~~g~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eagl~~--~v~~~ 313 (313)
.+++-.+......+....... +....+..+|+.+||++|+|..+.++++.++|+|+||+. .|||+
T Consensus 139 ~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~w~~lri~~G~p~~~~~~~~~~iPqevnl~~~~gISF~ 205 (305)
T COG0354 139 RFLLDLPVPRLLQLVPKLALP----QALEASLDQWLALRIRAGIPGIDDATSEDFIPQEVNLDALGGISFK 205 (305)
T ss_pred cceeccchhhhhhhhhhcccc----ccccccHHHHHHHHHHcCCCcccchhccccChhhhCccccCcEecc
Confidence 233344433333333333222 356778889999999999999999999999999999987 44664
No 13
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.89 E-value=2.3e-22 Score=168.64 Aligned_cols=116 Identities=14% Similarity=0.266 Sum_probs=106.9
Q ss_pred EEEEEEecCCeEEEEcCCcchHHHHHHHHhhCCCCCceEEEEecCCeEEEEEeCccHHHHHhhccccCC-C--CCCcceE
Q psy6089 147 DCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-N--LHPFSYK 223 (313)
Q Consensus 147 d~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~--~~~~~~~ 223 (313)
+.+|+|+++++|+|+++++..+++.+||++++.. .+|.|+|+|+++++|.||||+|+++|+++++.|+ . ||+++++
T Consensus 33 ~~~v~rlg~d~~llv~~~~~~~~~~~~l~~~~~~-~~v~v~d~s~~~~~l~lqGP~A~~vL~~l~~~dl~~~~~~~~~~~ 111 (152)
T TIGR01375 33 EISVLWLGPDEWLIIAPQPEGAVLMAALAAALGP-EPHAVVDLSGGRTALRISGPMAEEVLAKGCAVDLSLSAFPVGAGR 111 (152)
T ss_pred CeEEEEEcCCEEEEEcCccchHHHHHHHHHHhCC-CccEEEEecCCEEEEEEEChhHHHHHHhcCCCCCCcccCCCCcEE
Confidence 3589999999999999999999999999998874 3699999999999999999999999999998888 4 9999999
Q ss_pred EEEECCcccEEEEecCCCCCceEEEEeccccHHHHHHHHHhcCc
Q psy6089 224 RTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGK 267 (313)
Q Consensus 224 ~~~i~~~~~v~~~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~ 267 (313)
++.+++ .+|++.|+ ||+||||+||++++.+||+.|+++|+
T Consensus 112 ~~~i~~-~~v~i~Rt---GE~GfEi~v~~s~a~~lw~~L~~ag~ 151 (152)
T TIGR01375 112 RTIFGK-IAAVIWRT---GEDTFEIIVRRSFAESLWHWLVDASE 151 (152)
T ss_pred EEEEcC-eEEEEEEc---CCCeEEEEEEhhHHHHHHHHHHHHhc
Confidence 999988 56999994 99999999999999999999999875
No 14
>KOG2929|consensus
Probab=99.57 E-value=5.9e-15 Score=133.06 Aligned_cols=193 Identities=17% Similarity=0.196 Sum_probs=131.4
Q ss_pred CeEEEeCCCceEEEEEccCchHHHHHhhhcccCccc--------CC-CCEEEeeeecCCCeeEEEEEEEEecCC----eE
Q psy6089 92 GVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNI--------PV-GGISHTGMQNERGGYENDCILVRETET----SY 158 (313)
Q Consensus 92 ~~~l~Dls~~~~i~v~~~G~dA~~fL~~l~t~di~l--------~~-G~~~~t~~ln~~G~i~~d~~v~r~~~d----~~ 158 (313)
+-.++-++++..|+|+ |+|+.+|||+|+||||.. ++ ....|++|||.+||++.|.++++...+ ++
T Consensus 29 ~~~~~~L~~RsliRv~--GpDtvkFLqGL~TNdv~~~~p~~~~a~~t~~~~Ya~fLN~qGR~LyD~iLY~~~~~~~~~~~ 106 (348)
T KOG2929|consen 29 NFNLSLLESRSLIRVR--GPDTVKFLQGLLTNDVTRHFPGIQGAPITRNGLYAAFLNTQGRLLYDTILYPTPVPVSEPEL 106 (348)
T ss_pred cceeeecCCceEEEEe--CccHHHHHhhhhcccccccCcccccCCCCCchhhhhhhccCccEEEEEEEecCCCCCCCCce
Confidence 3457889999999999 999999999999999974 22 246799999999999999999998765 89
Q ss_pred EEEcCCcchHHHHHHHHhhCCCCCceEEEEecCCeEEEEEeC-ccHHHHHhhccccCCCCCCcceEEEEECCcccEEEEe
Q psy6089 159 FMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVG-PKAKQLLSELCDEDINLHPFSYKRTDIGYASDVKLMG 237 (313)
Q Consensus 159 ~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~G-P~a~~vL~~l~~~dl~~~~~~~~~~~i~~~~~v~~~R 237 (313)
+|.+.......+..+|++|... .+|+|+.+.+++..+.+.- |+.-. +.. .++-.. ..+...|
T Consensus 107 llE~d~~~~~~~~khl~~yrLr-~kv~v~~id~el~tw~v~~~p~~~~------d~~-~~~~~~---------~~~~~~r 169 (348)
T KOG2929|consen 107 LLECDGSVVGDFLKHLQKYRLR-RKVEVEKIDHELKTWKVEVLPKNSI------DAN-VFEENV---------LNVLYNR 169 (348)
T ss_pred EEEecCccchHHHHHHHHhhhh-hcceeeeCchhhceeeeeecccccc------chh-hcchhh---------hhhhhcc
Confidence 9999999999999999999663 6899999887766665541 21110 000 010000 0122223
Q ss_pred cCCCCCceEEEEeccccHHHHHHHHHhcCccCCceecCccchhhhhhcccCCcccCCCCCC-CCcccccCCc--cccCC
Q psy6089 238 FTHTGEPGYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSV-TTPFESGSAY--RVKLD 313 (313)
Q Consensus 238 ~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~g~~~~G~~a~~~lRiE~G~~~~g~dl~~~-~~P~Eagl~~--~v~~~ 313 (313)
....--.||++. +.+.+.. +.+. ......--+..+|.++|++.-.+|+.+. ..|+|+|++| .|+|+
T Consensus 170 dpr~s~~~~~~l-~~~f~~~----~~~~-----~~~~d~~~Y~~~Ry~~Gv~EG~~el~pg~~lPLE~N~d~lngISf~ 238 (348)
T KOG2929|consen 170 DPRFSGMGWRLL-PQDFAVP----TSEQ-----VSEGDESDYRLLRYQQGVAEGSQELIPGTLLPLESNFDFLNGISFD 238 (348)
T ss_pred CCcccccccccc-ceeecCc----cccc-----ccccchhHHHHHHHHcCcccchhhcCcccccceecccccccccccc
Confidence 332222344432 2221111 1111 1122223378899999999999999764 5899999988 56664
No 15
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+. This enzyme catalyzes the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2 [, ].; PDB: 2GAH_C 3ADA_C 1VRQ_C 3AD8_C 3AD9_C 3AD7_C 1X31_C.
Probab=99.46 E-value=6.1e-13 Score=110.78 Aligned_cols=133 Identities=17% Similarity=0.240 Sum_probs=95.0
Q ss_pred HHHHhhhcccCcccCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchHHHHHHHHhhCCCCCceEEEEecCCe
Q psy6089 114 VDWLQQLCSNDVNIPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKY 193 (313)
Q Consensus 114 ~~fL~~l~t~di~l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~ 193 (313)
..-++..+...++.+++... ..+ .+.++|+|+|+|+.+. .......|++.+.. ...+.|+|+.+
T Consensus 10 ~aa~~~a~G~~lP~~~~~~~-----------~~~-~~~wlgPdewLl~~~~--~~~~~~~l~~~l~~--~a~v~d~Sd~~ 73 (147)
T PF04268_consen 10 AAALAAALGVALPAAPNSVA-----------AGG-AVLWLGPDEWLLLSPD--GEDLAAALAAALGG--HASVVDVSDGR 73 (147)
T ss_dssp HHHHHHHCSS----STCEEE-----------E-T-EEEEEETTEEEEEESS---TCHHHHHHHHHTT--SSEEEE-TTTB
T ss_pred HHHHHHHhCCCCCCccceec-----------cCC-eEEEEcCCEEEEEecC--cchHHHHHHHhhCC--CeEEEecCCce
Confidence 44455555555554444332 223 6899999999999932 23346667766553 56899999999
Q ss_pred EEEEEeCccHHHHHhhccccCC---CCCCcceEEEEECCcccEEEEecCCCCCceEEEEeccccHHHHHHHHHhcC
Q psy6089 194 TVINVVGPKAKQLLSELCDEDI---NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLG 266 (313)
Q Consensus 194 ~~l~l~GP~a~~vL~~l~~~dl---~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag 266 (313)
+.|.|.||+++++|++++..|+ .||..++..+.+++ .+|.+.|. |+.+|+|+|+++.+.++|+.|.++.
T Consensus 74 ~~~~lsG~~a~~vLak~~~iDl~~~af~~G~~a~T~~~~-i~v~l~r~---~~~~f~l~v~rSfA~~l~~~L~~Aa 145 (147)
T PF04268_consen 74 VWFRLSGPAARDVLAKGCPIDLHPSAFPPGRAARTSFAH-ISVILWRD---GEDGFRLLVRRSFAEYLWHWLEDAA 145 (147)
T ss_dssp --EEEESTTHHHHHTTT--S--STTTS-TTEEEEEEETT-EEEEEEEE---ETTEEEEEEBGGGHHHHHHHHHHHH
T ss_pred EEEEEECHHHHHHHHhhCCCCCCcccCCCCcEEEEeecC-eEEEEEEc---CCCEEEEEEECchHHHHHHHHHHHh
Confidence 9999999999999999999998 79999999999988 67999986 6789999999999999999998864
No 16
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism]
Probab=99.34 E-value=4.1e-11 Score=101.43 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=115.3
Q ss_pred eEEEeCCCceEEEEEccCchHHHHHhhhcccCccc-CCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchHHHH
Q psy6089 93 VGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNI-PVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVF 171 (313)
Q Consensus 93 ~~l~Dls~~~~i~v~~~G~dA~~fL~~l~t~di~l-~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~ 171 (313)
..+-..+....+.+. ++++.+-|..-+-.-++. +.+.+. + .+..|.+++||+|+++.+........
T Consensus 27 ~~l~~~p~~~~vl~~--~~~~~~al~aal~~~~P~~~~~~a~-s----------ge~~v~wlgPDeW~Vi~~~~~~~~~~ 93 (189)
T COG4583 27 FVLRERPEGRIVLVA--AEAADPALSAALGRVLPAEPKGVAS-S----------GERSVLWLGPDEWLVISEGGEDAAMK 93 (189)
T ss_pred eeeccCCCCceEEee--cCccchhHHHHHhhhcCCCCCCccc-c----------CceEEEEeCCCeeEEEcCCCccHHHH
Confidence 344555666666777 776665444333333331 222211 0 23458899999999999877655422
Q ss_pred HHHHhhCCCCCceEEEEecCCeEEEEEeCccHHHHHhhccccCC---CCCCcceEEEEECCcccEEEEecCCCCCceEEE
Q psy6089 172 EWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI---NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCL 248 (313)
Q Consensus 172 ~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl---~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G~el 248 (313)
.-+.. .. ......|+|..++.|.|.||+|+++|++.|..|| .||...+..+-+++ ..+.+.| +|++-|||
T Consensus 94 aa~A~-~~--~~as~VDvShg~t~I~IsG~~Ae~~L~kg~~~DL~~~~FpvG~~a~T~~~~-~~vvl~r---~g~d~fei 166 (189)
T COG4583 94 AAFAS-LE--ALASAVDVSHGRTAIRISGPKAEAVLAKGCALDLSLEAFPVGAAARTIFGK-AAVVLTR---TGADTFEI 166 (189)
T ss_pred HHHhh-cc--ccceeeeccCCeEEEEecCHhHHHHHhcCCccccChhhCCCccceeeeecc-eEEEEEe---ecCCeEEE
Confidence 22222 22 2238899999999999999999999999999998 89999998887776 5688888 68999999
Q ss_pred EeccccHHHHHHHHHhcCccCC
Q psy6089 249 YIPSEYALHVYQKIMTLGKDYN 270 (313)
Q Consensus 249 ~~~~~~a~~l~~~L~~ag~~~g 270 (313)
+|-++++.++|..|.++.++++
T Consensus 167 ~V~RSFAe~~w~~L~~as~e~~ 188 (189)
T COG4583 167 EVWRSFAESLWHLLLDASAEVG 188 (189)
T ss_pred EeehhhHHHHHHHHHHhhhhhc
Confidence 9999999999999999887765
No 17
>TIGR03317 ygfZ_signature folate-binding protein YgfZ. YgfZ is a protein from Escherichia coli, homologous to the glycine cleavage system T protein, or aminomethyltransferase, GcvT (TIGR00528). Homologs of YgfZ other than members of the GcvT family share a well-conserved signature region that includes the motif, KGCYxGQE. Elsewhere, sequence diverge and length variation are substantial. Members of this family are mostly bacterial, largely absent from the Firmicutes and otherwise usually present. A few eukaryotic examples are found among the Apicomplexa, and a few archaeal sequences are found. Two functions implicated for this folate-binding protein are RNA modification (a function likely to be conserved) and replication initiation (a function likely to be highly variable). Many members of this family are, at the time of construction of this model, misnamed as the glycine cleavage system T protein.
Probab=98.89 E-value=6.1e-10 Score=80.24 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=34.4
Q ss_pred chhhhhhcccCCcccCCCCCCCCcccccCCc--cccCC
Q psy6089 278 TQRYMRIEKFIPFWAEDLNSVTTPFESGSAY--RVKLD 313 (313)
Q Consensus 278 a~~~lRiE~G~~~~g~dl~~~~~P~Eagl~~--~v~~~ 313 (313)
+|+++|||+|+|.||+|++++++|+|+||++ +|+|+
T Consensus 2 ~~~~lRlE~g~~~~g~el~~~~~P~E~gl~~~~~v~~~ 39 (67)
T TIGR03317 2 AWELLRIAAGIPEGGAETSGEFLPQELNLDALGGVSFK 39 (67)
T ss_pred HHHHHHHHcCCCccccccCCCCCHhHcCCCccCcEeCC
Confidence 6899999999999999999999999999999 99985
No 18
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+. This enzyme catalyzes the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2 [, ].; PDB: 2GAH_C 3ADA_C 1VRQ_C 3AD8_C 3AD9_C 3AD7_C 1X31_C.
Probab=97.70 E-value=0.00063 Score=56.63 Aligned_cols=83 Identities=19% Similarity=0.335 Sum_probs=63.2
Q ss_pred HHHHcCeEEEeCC-CceEEEEEccCchHHHHHhhhcccCcc---cCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEc
Q psy6089 87 RACFEGVGIIDMS-SFSKIKITCSDESLVDWLQQLCSNDVN---IPVGGISHTGMQNERGGYENDCILVRETETSYFMVS 162 (313)
Q Consensus 87 ~a~r~~~~l~Dls-~~~~i~v~~~G~dA~~fL~~l~t~di~---l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~ 162 (313)
.++.....+.|+| .+..|+|+ |+.+.+.|.+.|+-|+. +++|++..|.+- + -.++|.|.+++.|.|++
T Consensus 58 ~~l~~~a~v~d~Sd~~~~~~ls--G~~a~~vLak~~~iDl~~~af~~G~~a~T~~~----~--i~v~l~r~~~~~f~l~v 129 (147)
T PF04268_consen 58 AALGGHASVVDVSDGRVWFRLS--GPAARDVLAKGCPIDLHPSAFPPGRAARTSFA----H--ISVILWRDGEDGFRLLV 129 (147)
T ss_dssp HHHTTSSEEEE-TTTB--EEEE--STTHHHHHTTT--S--STTTS-TTEEEEEEET----T--EEEEEEEEETTEEEEEE
T ss_pred HhhCCCeEEEecCCceEEEEEE--CHHHHHHHHhhCCCCCCcccCCCCcEEEEeec----C--eEEEEEEcCCCEEEEEE
Confidence 3455578999999 55688898 99999999999999994 689999999884 3 34567799999999999
Q ss_pred CCcchHHHHHHHHhh
Q psy6089 163 PTSQQTRVFEWMKNH 177 (313)
Q Consensus 163 ~~~~~~~~~~~L~~~ 177 (313)
..+.++.++.||...
T Consensus 130 ~rSfA~~l~~~L~~A 144 (147)
T PF04268_consen 130 RRSFAEYLWHWLEDA 144 (147)
T ss_dssp BGGGHHHHHHHHHHH
T ss_pred ECchHHHHHHHHHHH
Confidence 999999999999753
No 19
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.55 E-value=0.00091 Score=55.88 Aligned_cols=78 Identities=19% Similarity=0.393 Sum_probs=67.1
Q ss_pred CeEEEeCCC-ceEEEEEccCchHHHHHhhhcccCcc---cCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcch
Q psy6089 92 GVGIIDMSS-FSKIKITCSDESLVDWLQQLCSNDVN---IPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQ 167 (313)
Q Consensus 92 ~~~l~Dls~-~~~i~v~~~G~dA~~fL~~l~t~di~---l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~ 167 (313)
.+.+.|+|. +..|.|+ ||.|.+.|+.++..|+. ++.+++..+.+ ++ ..++|.|.|++.|-|.++.+..
T Consensus 68 ~v~v~d~s~~~~~l~lq--GP~A~~vL~~l~~~dl~~~~~~~~~~~~~~i----~~--~~v~i~RtGE~GfEi~v~~s~a 139 (152)
T TIGR01375 68 PHAVVDLSGGRTALRIS--GPMAEEVLAKGCAVDLSLSAFPVGAGRRTIF----GK--IAAVIWRTGEDTFEIIVRRSFA 139 (152)
T ss_pred ccEEEEecCCEEEEEEE--ChhHHHHHHhcCCCCCCcccCCCCcEEEEEE----cC--eEEEEEEcCCCeEEEEEEhhHH
Confidence 589999886 8999999 99999999999987885 67888887776 23 2478899999999999999999
Q ss_pred HHHHHHHHhh
Q psy6089 168 TRVFEWMKNH 177 (313)
Q Consensus 168 ~~~~~~L~~~ 177 (313)
..++++|.+.
T Consensus 140 ~~lw~~L~~a 149 (152)
T TIGR01375 140 ESLWHWLVDA 149 (152)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 20
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism]
Probab=97.47 E-value=0.00096 Score=56.98 Aligned_cols=86 Identities=16% Similarity=0.224 Sum_probs=69.1
Q ss_pred HHHHHHcCeEEEeCCC-ceEEEEEccCchHHHHHhhhcccCcc---cCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEE
Q psy6089 85 EYRACFEGVGIIDMSS-FSKIKITCSDESLVDWLQQLCSNDVN---IPVGGISHTGMQNERGGYENDCILVRETETSYFM 160 (313)
Q Consensus 85 E~~a~r~~~~l~Dls~-~~~i~v~~~G~dA~~fL~~l~t~di~---l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l 160 (313)
-+..+-....+.|+|| ...|+|+ |+.|...|+.-|+.|+. .++|++.-|++= + ..+.+.|.++|.|-|
T Consensus 95 a~A~~~~~as~VDvShg~t~I~Is--G~~Ae~~L~kg~~~DL~~~~FpvG~~a~T~~~----~--~~vvl~r~g~d~fei 166 (189)
T COG4583 95 AFASLEALASAVDVSHGRTAIRIS--GPKAEAVLAKGCALDLSLEAFPVGAAARTIFG----K--AAVVLTRTGADTFEI 166 (189)
T ss_pred HHhhccccceeeeccCCeEEEEec--CHhHHHHHhcCCccccChhhCCCccceeeeec----c--eEEEEEeecCCeEEE
Confidence 3344445668999997 3445555 99999999999999994 699999988764 2 456788999999999
Q ss_pred EcCCcchHHHHHHHHhhC
Q psy6089 161 VSPTSQQTRVFEWMKNHL 178 (313)
Q Consensus 161 ~~~~~~~~~~~~~L~~~~ 178 (313)
++=.+.++.++.+|....
T Consensus 167 ~V~RSFAe~~w~~L~~as 184 (189)
T COG4583 167 EVWRSFAESLWHLLLDAS 184 (189)
T ss_pred EeehhhHHHHHHHHHHhh
Confidence 999999999999987653
No 21
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=95.96 E-value=0.075 Score=42.17 Aligned_cols=74 Identities=14% Similarity=0.120 Sum_probs=53.2
Q ss_pred CCceEEEEEccCchHHHHHhhhcccCcccCCCCEEEeeeecCCCeeEEEEEEEEe-------cCCeEEEEcCCc--chHH
Q psy6089 99 SSFSKIKITCSDESLVDWLQQLCSNDVNIPVGGISHTGMQNERGGYENDCILVRE-------TETSYFMVSPTS--QQTR 169 (313)
Q Consensus 99 s~~~~i~v~~~G~dA~~fL~~l~t~di~l~~G~~~~t~~ln~~G~i~~d~~v~r~-------~~d~~~l~~~~~--~~~~ 169 (313)
+.-+.|+|+ ||+|.+.++.++... ..+..+.|..+.+.+|.++|++.+... |||-.=+-+..+ ..++
T Consensus 12 ~aiaiIRiS--G~~a~~i~~~~~~~~--~~~r~~~~~~~~~~~~~~iDe~lv~~f~~P~SyTGEd~vEi~~HGg~~v~~~ 87 (114)
T PF10396_consen 12 SAIAIIRIS--GPDALEIAQKLFGKS--PKPRRAYYGTIYDEDGEPIDEVLVLYFPAPRSYTGEDVVEIHCHGGPAVVRR 87 (114)
T ss_dssp -SEEEEEEE--STTHHHHHHTTESSS--TTTTEEEEEEEECSSTCEEEEEEEEEEBTTCSSSSSEEEEEEEESSHHHHHH
T ss_pred ceEEEEEeE--cHHHHHHHHHHhCcc--ccCcEEEEEEEEcCCCccccceeEEeecCCCcccCCCEEEEEcCCCHHHHHH
Confidence 456889999 999999999999333 457899999999999999999988765 445444444333 2344
Q ss_pred HHHHHHh
Q psy6089 170 VFEWMKN 176 (313)
Q Consensus 170 ~~~~L~~ 176 (313)
+++.|.+
T Consensus 88 il~~l~~ 94 (114)
T PF10396_consen 88 ILEALLK 94 (114)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4454443
No 22
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=95.79 E-value=0.11 Score=41.22 Aligned_cols=86 Identities=15% Similarity=0.101 Sum_probs=50.6
Q ss_pred CCeEEEEEeCccHHHHHhhccccCCCCCCcceEEEEE-CCc--ccEEEE----ecCCCCCceEEEEecccc--HHHHHHH
Q psy6089 191 SKYTVINVVGPKAKQLLSELCDEDINLHPFSYKRTDI-GYA--SDVKLM----GFTHTGEPGYCLYIPSEY--ALHVYQK 261 (313)
Q Consensus 191 ~~~~~l~l~GP~a~~vL~~l~~~dl~~~~~~~~~~~i-~~~--~~v~~~----R~~~~Ge~G~el~~~~~~--a~~l~~~ 261 (313)
...+++.|+||+|.+++++++...+.-.......+.- .+. .++.++ -.|||||+-.||+|--.. ...+.+.
T Consensus 12 ~aiaiIRiSG~~a~~i~~~~~~~~~~~r~~~~~~~~~~~~~~iDe~lv~~f~~P~SyTGEd~vEi~~HGg~~v~~~il~~ 91 (114)
T PF10396_consen 12 SAIAIIRISGPDALEIAQKLFGKSPKPRRAYYGTIYDEDGEPIDEVLVLYFPAPRSYTGEDVVEIHCHGGPAVVRRILEA 91 (114)
T ss_dssp -SEEEEEEESTTHHHHHHTTESSSTTTTEEEEEEEECSSTCEEEEEEEEEEBTTCSSSSSEEEEEEEESSHHHHHHHHHH
T ss_pred ceEEEEEeEcHHHHHHHHHHhCccccCcEEEEEEEEcCCCccccceeEEeecCCCcccCCCEEEEEcCCCHHHHHHHHHH
Confidence 4678999999999999999985432211112222211 110 112222 348999999999996654 3556666
Q ss_pred HHhcCccCCceecCccchh
Q psy6089 262 IMTLGKDYNARDVGMFTQR 280 (313)
Q Consensus 262 L~~ag~~~g~~~~G~~a~~ 280 (313)
|.+. |++++-...+.
T Consensus 92 l~~~----G~R~A~pGEFT 106 (114)
T PF10396_consen 92 LLKA----GARLAEPGEFT 106 (114)
T ss_dssp HHHT----T-EE--TTHHH
T ss_pred HHHc----CceEcCCchhh
Confidence 6665 67776655443
No 23
>PF08170 POPLD: POPLD (NUC188) domain; InterPro: IPR012590 This domain is found in POP1-like nucleolar proteins [].; GO: 0004526 ribonuclease P activity, 0006396 RNA processing
Probab=95.19 E-value=0.027 Score=43.02 Aligned_cols=48 Identities=23% Similarity=0.425 Sum_probs=45.0
Q ss_pred eEEEEeccccHHHHHHHHHhcCccCCceecCccchhhhhhcccCCcccCCCC
Q psy6089 245 GYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLN 296 (313)
Q Consensus 245 G~el~~~~~~a~~l~~~L~~ag~~~g~~~~G~~a~~~lRiE~G~~~~g~dl~ 296 (313)
||.|++|..-+..+|-+|.-. |+.+.|+..+..+-.|+|.|.+..|..
T Consensus 1 gw~lIlP~~w~~~fW~~L~~~----g~r~~GL~e~~~~~~E~g~~~FP~DyP 48 (92)
T PF08170_consen 1 GWDLILPWGWGMPFWIALVYR----GARAGGLRERRQLAFESGIPSFPDDYP 48 (92)
T ss_pred CeEEEEecHHHHHHHHHHHHh----CCeeehHHHHHHHHHHcCCCcCCCCCC
Confidence 799999999999999999987 699999999999999999999998874
No 24
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=92.25 E-value=0.33 Score=47.32 Aligned_cols=63 Identities=10% Similarity=0.129 Sum_probs=50.3
Q ss_pred CceEEEEEccCchHHHHHhhhcccCcc-cCCCCEEEeeeecCCCeeEEEEEEEEe-------cCCeEEEEcCCc
Q psy6089 100 SFSKIKITCSDESLVDWLQQLCSNDVN-IPVGGISHTGMQNERGGYENDCILVRE-------TETSYFMVSPTS 165 (313)
Q Consensus 100 ~~~~i~v~~~G~dA~~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d~~v~r~-------~~d~~~l~~~~~ 165 (313)
.-+.++|+ ||+|.+.++.++.. +. .++-.+.|+.+.+++|.+++++.|..+ |||-.=+-|.++
T Consensus 18 aI~IvRiS--Gp~a~~ia~~i~~~-~~~~~~r~a~y~~i~d~~~~~iDe~lvl~f~aP~SFTGEDvvEi~~HGg 88 (454)
T COG0486 18 AIGIVRIS--GPDALEIAQKLFGG-LKLPKPRTAHYGHIKDENGEIIDEVLVLYFKAPNSFTGEDVVEIQCHGG 88 (454)
T ss_pred eEEEEEec--CHhHHHHHHHHhCC-CCCCCCcEEEEEEEEcCCCcEeeeeeEEEEeCCCCcccccEEEEEcCCC
Confidence 45789999 99999999999997 44 467889999999999999999999765 555444444444
No 25
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed
Probab=90.33 E-value=1.4 Score=41.81 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=60.9
Q ss_pred CceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEE---CCc--ccEEEEecCCCCCceEEEEeccccH
Q psy6089 182 HYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDI---GYA--SDVKLMGFTHTGEPGYCLYIPSEYA 255 (313)
Q Consensus 182 ~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i---~~~--~~v~~~R~~~~Ge~G~el~~~~~~a 255 (313)
..|.+.|++. +.+|.|.||.+.+.|+.++..|+ .++..++...-+ .|. .++.+.|. ++..|-|.++...+
T Consensus 42 ~~~~l~dls~-~~~i~v~G~Da~~fLq~~~t~dv~~l~~g~~~~~~~l~~~G~i~~d~~v~r~---~~~~~ll~~~~~~~ 117 (359)
T PRK00389 42 TDAGLFDVSH-MGEVDVTGPDALAFLQYLLANDVSKLKPGKAQYTCMLNEDGGVIDDLIVYKL---SEDEYLLVVNAANR 117 (359)
T ss_pred hCceEEECCC-cEEEEEECCCHHHHHhhhcccccccCCCCcEEEeEEECCCCCEEEeEEEEEe---cCCEEEEEECcccH
Confidence 4688999985 89999999999999999998888 555554443322 121 13566665 36789999999999
Q ss_pred HHHHHHHHhcC
Q psy6089 256 LHVYQKIMTLG 266 (313)
Q Consensus 256 ~~l~~~L~~ag 266 (313)
..+.+.|....
T Consensus 118 ~~~~~~L~~~~ 128 (359)
T PRK00389 118 EKDLAWIKSHA 128 (359)
T ss_pred HHHHHHHHhhC
Confidence 98888887754
No 26
>TIGR00528 gcvT glycine cleavage system T protein. Eukaryotic forms are mitochondrial and have an N-terminal transit peptide.
Probab=89.74 E-value=1.8 Score=41.20 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=58.9
Q ss_pred CceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEEC---Cc--ccEEEEecCCCCCceEEEEeccccH
Q psy6089 182 HYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIG---YA--SDVKLMGFTHTGEPGYCLYIPSEYA 255 (313)
Q Consensus 182 ~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~---~~--~~v~~~R~~~~Ge~G~el~~~~~~a 255 (313)
.+|-+.|++. +.++.|.||.+.+.|+.++..|+ .++..++..+.+- |. .++.+.|. +|+.|.|.++.+.+
T Consensus 41 ~~~~l~dls~-~~~i~vsG~Da~~fLq~~~t~di~~l~~g~~~~~~~l~~~G~i~~d~~v~r~---~~d~~~l~~~~~~~ 116 (361)
T TIGR00528 41 TDAGLFDVSH-MGIVDLSGSRSLEFLQRLLPNDVAALTPGKAQYSVLLNPQGGVVDDLIIYYF---GEDRFRLVVNAATR 116 (361)
T ss_pred hhCcEEECCC-cEEEEEECCCHHHHHhHhcccccccCCCCCEEEEEEECCCCeEEEEEEEEEe---cCCEEEEEECCccH
Confidence 3578899985 89999999999999999998888 6656655443321 10 13455664 56789999999888
Q ss_pred HHHHHHHHhc
Q psy6089 256 LHVYQKIMTL 265 (313)
Q Consensus 256 ~~l~~~L~~a 265 (313)
..+++.|...
T Consensus 117 ~~~~~~l~~~ 126 (361)
T TIGR00528 117 EKDLSWITEH 126 (361)
T ss_pred HHHHHHHHHh
Confidence 8877777654
No 27
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=88.84 E-value=2.5 Score=41.61 Aligned_cols=85 Identities=16% Similarity=0.119 Sum_probs=52.3
Q ss_pred CCeEEEEEeCccHHHHHhhccccCCCCCCcceEEEEE-C--Cc--ccEEEE----ecCCCCCceEEEEecccc--HHHHH
Q psy6089 191 SKYTVINVVGPKAKQLLSELCDEDINLHPFSYKRTDI-G--YA--SDVKLM----GFTHTGEPGYCLYIPSEY--ALHVY 259 (313)
Q Consensus 191 ~~~~~l~l~GP~a~~vL~~l~~~dl~~~~~~~~~~~i-~--~~--~~v~~~----R~~~~Ge~G~el~~~~~~--a~~l~ 259 (313)
...+++.|+||+|.++++++++.+...+.....-..+ . +. .++.++ -.|||||+--||+|-... ...+.
T Consensus 7 ~~i~viRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~S~TGEDvvEi~~HGg~~v~~~il 86 (442)
T TIGR00450 7 SAIHIIRLSGPDSLSILKKITNKLNTASGMRIQYGHIIDSNNKCKDDELLFKFVAPNSYTGEDVIEIQCHGSMLIVQEIL 86 (442)
T ss_pred ceEEEEEeehHHHHHHHHHHhCCCCCCCCcEEEEEEEECCCCCEeeeEEEEEEcCCCCcccccEEEEECCCCHHHHHHHH
Confidence 4568999999999999999985321111122111112 1 10 123333 458999999999996644 35566
Q ss_pred HHHHhcCccCCceecCccch
Q psy6089 260 QKIMTLGKDYNARDVGMFTQ 279 (313)
Q Consensus 260 ~~L~~ag~~~g~~~~G~~a~ 279 (313)
+.|.+. |++++-..-+
T Consensus 87 ~~l~~~----g~R~A~pGEF 102 (442)
T TIGR00450 87 QLCLKS----GARLAQPGEF 102 (442)
T ss_pred HHHHHc----CCeEcCCchh
Confidence 666665 5777765444
No 28
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]
Probab=88.23 E-value=2.4 Score=40.87 Aligned_cols=79 Identities=24% Similarity=0.278 Sum_probs=60.7
Q ss_pred CceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEE----CCc-ccEEEEecCCCCCceEEEEeccccH
Q psy6089 182 HYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDI----GYA-SDVKLMGFTHTGEPGYCLYIPSEYA 255 (313)
Q Consensus 182 ~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i----~~~-~~v~~~R~~~~Ge~G~el~~~~~~a 255 (313)
.+|-|-|+|. +..+.|+||.|.+.|+.++..|+ .++...++-+.. ++. .+..+.| .+|+.|-+.+....+
T Consensus 46 ~~aGlfDvSh-mgk~~V~GpdA~~~L~~l~~ndv~kl~~Gr~~Yt~~lne~G~v~dD~~v~r---l~~d~f~lv~~a~~~ 121 (379)
T COG0404 46 EAAGLFDVSH-MGKVEVSGPDAAAFLQRLLTNDVSKLKPGRARYTLMLNEDGGIIDDLIVYR---LGEDRFFLVTNAATA 121 (379)
T ss_pred hcCceEeccC-ceEEEEECCCHHHHHHHHcccccCcCCCCcEEEeeeECCCCCEEeeEEEEE---ecCCeEEEEeCccch
Confidence 4688899984 68999999999999999998887 666555543322 111 2456778 678999999998888
Q ss_pred HHHHHHHHh
Q psy6089 256 LHVYQKIMT 264 (313)
Q Consensus 256 ~~l~~~L~~ 264 (313)
...++.+..
T Consensus 122 ~~~~~~l~~ 130 (379)
T COG0404 122 EKDLAWLER 130 (379)
T ss_pred HHHHHHHHH
Confidence 888888876
No 29
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase 2.1.2.10 from EC that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein ; GO: 0004047 aminomethyltransferase activity, 0006546 glycine catabolic process, 0005737 cytoplasm; PDB: 3TFJ_B 3TFI_B 3TFH_A 1YX2_B 3GIR_A 3A8K_D 3A8I_B 3A8J_C 1VLO_A 1WOO_A ....
Probab=88.23 E-value=2.5 Score=36.62 Aligned_cols=80 Identities=18% Similarity=0.331 Sum_probs=59.2
Q ss_pred HHHcCeEEEeCCC-ceEEEEEccCchHHHHHhhhcccCcc-cCCCCEEEeeeecCCCeeEEEEEEEE---ecCCeEEEEc
Q psy6089 88 ACFEGVGIIDMSS-FSKIKITCSDESLVDWLQQLCSNDVN-IPVGGISHTGMQNERGGYENDCILVR---ETETSYFMVS 162 (313)
Q Consensus 88 a~r~~~~l~Dls~-~~~i~v~~~G~dA~~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d~~v~r---~~~d~~~l~~ 162 (313)
..+..|-+-|++. +..+.|. ||.|.+.|+.++..++. ++..+.... .+ | ++++.| .++..|.|++
T Consensus 83 ~~~~~v~i~~~~~~~~~~~l~--Gp~a~~~l~~~~~~~~~~~~~~~~~~~--~~--~----~~~~~r~~~~g~~g~~l~~ 152 (211)
T PF01571_consen 83 ILRSDVEIEDVSDDLAVLGLQ--GPKAAEVLQKLFDEDIEPLPFFSSREV--GD--G----PVLVARTGRTGELGYELIV 152 (211)
T ss_dssp HHHSS-EEEEETTTEEEEEEE--STTHHHHHHHHSSSSGTTSHTTBEEEE--ET--T----EEEEESCBSSSSSEEEEEE
T ss_pred ccccCcEEEEcccceeEEEEE--cchhhHHHHHhcccccccccccceeee--cC--c----eEEEEecccCCCCCEEEEe
Confidence 3458999999997 9999999 99999999999955555 555655544 11 1 335554 4667899999
Q ss_pred CCcchHHHHHHHHhh
Q psy6089 163 PTSQQTRVFEWMKNH 177 (313)
Q Consensus 163 ~~~~~~~~~~~L~~~ 177 (313)
+.+....+++.|...
T Consensus 153 ~~~~~~~~~~~l~~~ 167 (211)
T PF01571_consen 153 PAEEAEALWDALLEA 167 (211)
T ss_dssp EGGGHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHH
Confidence 988888888888544
No 30
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional
Probab=88.08 E-value=4.3 Score=38.80 Aligned_cols=79 Identities=19% Similarity=0.111 Sum_probs=58.7
Q ss_pred CceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEEC---Cc--ccEEEEecCCCCCceEEEEeccccH
Q psy6089 182 HYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIG---YA--SDVKLMGFTHTGEPGYCLYIPSEYA 255 (313)
Q Consensus 182 ~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~---~~--~~v~~~R~~~~Ge~G~el~~~~~~a 255 (313)
.+|-+-|+|. ++.|.|.||.|.+.|+.++..|+ .++..++.-..+- |. .++.+.|. ++.|-|.++....
T Consensus 50 ~~a~l~Dls~-~~~i~v~G~Da~~fLq~~~tndi~~l~~g~~~y~~~ln~~G~i~~d~~v~r~----~d~~~L~~~~~~~ 124 (370)
T PRK13579 50 AHAGLFDVSH-MGQIEVSGKDAAAALERLVPVDILALKEGRQRYTFFTNEQGGILDDLMVTNL----GDHLFLVVNAACK 124 (370)
T ss_pred hccEEEECCC-cEEEEEECCCHHHHHHHhccccCCCCCCCCEEEeEEECCCCeEEEeEEEEEE----CCeEEEEECcCCH
Confidence 4688899985 79999999999999999998888 6666555433221 11 14567776 3579999988888
Q ss_pred HHHHHHHHhc
Q psy6089 256 LHVYQKIMTL 265 (313)
Q Consensus 256 ~~l~~~L~~a 265 (313)
..+++.|...
T Consensus 125 ~~~~~~l~~~ 134 (370)
T PRK13579 125 DADIAHLREH 134 (370)
T ss_pred HHHHHHHHHh
Confidence 8887777654
No 31
>PLN02319 aminomethyltransferase
Probab=87.11 E-value=4 Score=39.56 Aligned_cols=80 Identities=16% Similarity=0.099 Sum_probs=60.0
Q ss_pred CceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEECC---c--ccEEEEecCCCCCceEEEEeccccH
Q psy6089 182 HYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIGY---A--SDVKLMGFTHTGEPGYCLYIPSEYA 255 (313)
Q Consensus 182 ~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~~---~--~~v~~~R~~~~Ge~G~el~~~~~~a 255 (313)
..|-+.|+|. ++.+.|.||.+.+.|+.++..|+ .++..++.-+.+-. . .++.+.|. +++.|-|.++....
T Consensus 73 ~~~gl~DlS~-~~~i~V~G~Da~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~ii~D~~v~r~---~~d~~~l~~~~~~~ 148 (404)
T PLN02319 73 QNGSLFDVSH-MCGLSLKGKDAIPFLETLVVADIAGLKDGTGTLSVFTNEKGGIIDDTVITKV---TDDHIYLVVNAGCR 148 (404)
T ss_pred hCeEEEECCC-cEEEEEECCCHHHHHhhhcccccCCCCCCCEEEeEEECCCCeEEEEEEEEEE---cCCEEEEEECCccH
Confidence 4689999985 79999999999999999999888 66566554433211 1 13566775 46789999998888
Q ss_pred HHHHHHHHhc
Q psy6089 256 LHVYQKIMTL 265 (313)
Q Consensus 256 ~~l~~~L~~a 265 (313)
..+++.|...
T Consensus 149 ~~~~~~l~~~ 158 (404)
T PLN02319 149 DKDLAHIEEH 158 (404)
T ss_pred HHHHHHHHhh
Confidence 8888777654
No 32
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=85.43 E-value=2.1 Score=42.09 Aligned_cols=53 Identities=11% Similarity=0.134 Sum_probs=41.7
Q ss_pred CCceEEEEEccCchHHHHHhhhcccCcccCCCCEEEeeeecCCCeeEEEEEEEEe
Q psy6089 99 SSFSKIKITCSDESLVDWLQQLCSNDVNIPVGGISHTGMQNERGGYENDCILVRE 153 (313)
Q Consensus 99 s~~~~i~v~~~G~dA~~fL~~l~t~di~l~~G~~~~t~~ln~~G~i~~d~~v~r~ 153 (313)
+.-+.|+|+ ||+|.+-++.++..+...++-+..|+.+.+++|.++|++.+..+
T Consensus 7 ~~i~viRiS--G~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f 59 (442)
T TIGR00450 7 SAIHIIRLS--GPDSLSILKKITNKLNTASGMRIQYGHIIDSNNKCKDDELLFKF 59 (442)
T ss_pred ceEEEEEee--hHHHHHHHHHHhCCCCCCCCcEEEEEEEECCCCCEeeeEEEEEE
Confidence 345789999 99999999999843221235677899999889999999988765
No 33
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=84.01 E-value=6.8 Score=38.60 Aligned_cols=84 Identities=15% Similarity=0.123 Sum_probs=51.5
Q ss_pred CCeEEEEEeCccHHHHHhhccccCCCCCCcceEEEEE--CCc--ccEEEE----ecCCCCCceEEEEecccc--HHHHHH
Q psy6089 191 SKYTVINVVGPKAKQLLSELCDEDINLHPFSYKRTDI--GYA--SDVKLM----GFTHTGEPGYCLYIPSEY--ALHVYQ 260 (313)
Q Consensus 191 ~~~~~l~l~GP~a~~vL~~l~~~dl~~~~~~~~~~~i--~~~--~~v~~~----R~~~~Ge~G~el~~~~~~--a~~l~~ 260 (313)
...+++.|+||.|.+++++++...+..|. ...-..+ .+. ..+.++ ..|||||+--||+|-... ...+.+
T Consensus 17 ~~i~viRiSG~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iD~~l~~~f~~P~S~TGEd~vEi~~HG~~~v~~~il~ 95 (449)
T PRK05291 17 GGIGIIRISGPDALEIAQKLFGKKLPKPR-TAHYGHIRDPGEVIDEVLVLYFPAPNSFTGEDVVEIQCHGGPAVLNLILE 95 (449)
T ss_pred ceEEEEEEEhHHHHHHHHHHhCCCCCCCc-EEEEEEEecCCcccceEEEEEecCCCCccCCcEEEEECCCCHHHHHHHHH
Confidence 45789999999999999999853221111 1111111 110 123332 458999999999996644 355666
Q ss_pred HHHhcCccCCceecCccch
Q psy6089 261 KIMTLGKDYNARDVGMFTQ 279 (313)
Q Consensus 261 ~L~~ag~~~g~~~~G~~a~ 279 (313)
.|.+. |++++-..-+
T Consensus 96 ~l~~~----g~r~A~pGEF 110 (449)
T PRK05291 96 LLLAL----GARLAEPGEF 110 (449)
T ss_pred HHHHc----CCEEccCccc
Confidence 66665 5777655443
No 34
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed
Probab=82.44 E-value=8.1 Score=36.99 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=54.9
Q ss_pred CceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEE----CCc-ccEEEEecCCCCCceEEEEeccccH
Q psy6089 182 HYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDI----GYA-SDVKLMGFTHTGEPGYCLYIPSEYA 255 (313)
Q Consensus 182 ~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i----~~~-~~v~~~R~~~~Ge~G~el~~~~~~a 255 (313)
.+|-+-|+|. +..+.|.||.|.+.|+.++..|+ .++..+..-+-+ ++. .++.+.|. +|+.|-+.+.....
T Consensus 52 ~~~gl~D~S~-~~~i~V~G~Da~~fL~~l~t~di~~l~~G~~~yt~~ln~~G~i~~D~~v~r~---~ed~~~l~~~~~~~ 127 (368)
T PRK12486 52 EHVQVWDVAV-ERQVEIRGPDAARLVQMLTPRDLRGMKPGQCYYVPIVDETGGMLNDPVALKL---AEDRWWISIADSDL 127 (368)
T ss_pred hcceEEEcCC-cEEEEEECCCHHHHHHHhcccccccCCCCcEEEEEEEcCCCcEEeeEEEEEe---cCCEEEEEEcCccH
Confidence 4688999985 68999999999999999998888 665665543322 111 24677786 46788887766654
Q ss_pred HHHHHHHHh
Q psy6089 256 LHVYQKIMT 264 (313)
Q Consensus 256 ~~l~~~L~~ 264 (313)
...++.+..
T Consensus 128 ~~~l~~~~~ 136 (368)
T PRK12486 128 LLWVKGLAN 136 (368)
T ss_pred HHHHHHhhh
Confidence 444555443
No 35
>PRK09559 putative global regulator; Reviewed
Probab=78.89 E-value=7.4 Score=36.54 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=55.4
Q ss_pred eEEEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEE---CCc--ccEEEEecCCCCCceEEEEeccccHHH
Q psy6089 184 ITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDI---GYA--SDVKLMGFTHTGEPGYCLYIPSEYALH 257 (313)
Q Consensus 184 V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i---~~~--~~v~~~R~~~~Ge~G~el~~~~~~a~~ 257 (313)
..+.+++ .+.+|.|.||.+.+.|+.++..|+ .++.....-..+ .|. .++++.|. + ++|-|.++.+.+..
T Consensus 19 ~~l~~L~-~~g~i~v~G~Da~~FLqg~~T~Dv~~L~~g~~~y~~~~n~kGril~d~~v~~~---~-~~~~l~~~~~~~~~ 93 (327)
T PRK09559 19 LTLISLD-DWALATITGADSEKYLQGQVTADVSQLTEDQHLLAAHCDAKGKMWSNLRLFRR---G-DGFAWIERRSVREN 93 (327)
T ss_pred eEEEcCc-cceEEEEECCcHHHHhcccccccccccCCCCeeEEEEECCCCcEEEEEEEEEe---C-CeEEEEeChhhhHH
Confidence 5677776 489999999999999999999898 666655443322 121 12445554 2 45889999998888
Q ss_pred HHHHHHhc
Q psy6089 258 VYQKIMTL 265 (313)
Q Consensus 258 l~~~L~~a 265 (313)
+.+.|...
T Consensus 94 ~~~~L~ky 101 (327)
T PRK09559 94 QLTELKKY 101 (327)
T ss_pred HHHHHhhc
Confidence 88888764
No 36
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=78.59 E-value=11 Score=37.02 Aligned_cols=75 Identities=15% Similarity=0.187 Sum_probs=46.5
Q ss_pred CCeEEEEEeCccHHHHHhhccccCC-CCCCcce--EEEEE-CCc--ccEEE--E--ecCCCCCceEEEEeccccH--HHH
Q psy6089 191 SKYTVINVVGPKAKQLLSELCDEDI-NLHPFSY--KRTDI-GYA--SDVKL--M--GFTHTGEPGYCLYIPSEYA--LHV 258 (313)
Q Consensus 191 ~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~--~~~~i-~~~--~~v~~--~--R~~~~Ge~G~el~~~~~~a--~~l 258 (313)
...+++.++||+|.++++++++. + ..+.... ..+.- .+. ..+.+ + -.|||||+--|+.|--..+ ..+
T Consensus 17 ~aI~IvRiSGp~a~~ia~~i~~~-~~~~~~r~a~y~~i~d~~~~~iDe~lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~i 95 (454)
T COG0486 17 GAIGIVRISGPDALEIAQKLFGG-LKLPKPRTAHYGHIKDENGEIIDEVLVLYFKAPNSFTGEDVVEIQCHGGPVVVNLI 95 (454)
T ss_pred ceEEEEEecCHhHHHHHHHHhCC-CCCCCCcEEEEEEEEcCCCcEeeeeeEEEEeCCCCcccccEEEEEcCCCHHHHHHH
Confidence 45789999999999999999974 2 1222221 11110 110 01222 2 4589999999999976543 456
Q ss_pred HHHHHhcC
Q psy6089 259 YQKIMTLG 266 (313)
Q Consensus 259 ~~~L~~ag 266 (313)
.+.+++.|
T Consensus 96 L~~~l~~G 103 (454)
T COG0486 96 LELLLKLG 103 (454)
T ss_pred HHHHHHcC
Confidence 66666654
No 37
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=78.58 E-value=6.7 Score=38.64 Aligned_cols=74 Identities=9% Similarity=0.114 Sum_probs=52.7
Q ss_pred CCceEEEEEccCchHHHHHhhhcccCcccCCCCEEEeeeecCCCeeEEEEEEEEe-------cCCeEEEEcCCcc--hHH
Q psy6089 99 SSFSKIKITCSDESLVDWLQQLCSNDVNIPVGGISHTGMQNERGGYENDCILVRE-------TETSYFMVSPTSQ--QTR 169 (313)
Q Consensus 99 s~~~~i~v~~~G~dA~~fL~~l~t~di~l~~G~~~~t~~ln~~G~i~~d~~v~r~-------~~d~~~l~~~~~~--~~~ 169 (313)
+.-+.|+|+ ||+|.+-++.++...+ .++.++.|+.+.++ |.++|++.+..+ |||-.=+-+.++. .+.
T Consensus 17 ~~i~viRiS--G~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~iD~~l~~~f~~P~S~TGEd~vEi~~HG~~~v~~~ 92 (449)
T PRK05291 17 GGIGIIRIS--GPDALEIAQKLFGKKL-PKPRTAHYGHIRDP-GEVIDEVLVLYFPAPNSFTGEDVVEIQCHGGPAVLNL 92 (449)
T ss_pred ceEEEEEEE--hHHHHHHHHHHhCCCC-CCCcEEEEEEEecC-CcccceEEEEEecCCCCccCCcEEEEECCCCHHHHHH
Confidence 456789999 9999999999996433 35678889988885 889999998765 5564445554443 344
Q ss_pred HHHHHHh
Q psy6089 170 VFEWMKN 176 (313)
Q Consensus 170 ~~~~L~~ 176 (313)
+++.|.+
T Consensus 93 il~~l~~ 99 (449)
T PRK05291 93 ILELLLA 99 (449)
T ss_pred HHHHHHH
Confidence 5555543
No 38
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=77.82 E-value=12 Score=40.76 Aligned_cols=80 Identities=18% Similarity=0.168 Sum_probs=61.1
Q ss_pred CceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEECC---c--ccEEEEecCCCCCceEEEEeccccH
Q psy6089 182 HYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIGY---A--SDVKLMGFTHTGEPGYCLYIPSEYA 255 (313)
Q Consensus 182 ~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~~---~--~~v~~~R~~~~Ge~G~el~~~~~~a 255 (313)
..|-+-|+|. +..|.|.||.|.+.|+.++..|+ .++..+++-+-+-. . .+..+.|. +|+.|-|.++...+
T Consensus 644 ~~vgl~D~S~-~g~i~V~G~DA~~fL~~~~tndi~~l~~G~~~yt~~l~~~G~i~dD~~v~r~---~ed~~~l~~~~~~~ 719 (985)
T TIGR01372 644 ESVGLFDAST-LGKIEVQGPDAAEFLNRVYTNAFTKLKVGKARYGLMLREDGMVFDDGVTSRL---AEDRFLMTTTTGGA 719 (985)
T ss_pred hceEEEECCC-cEEEEEECcCHHHHHhhhcccccCcCCCCCEEEeEEECCCCeEEEeEEEEEE---eCCEEEEEeCCcCH
Confidence 5799999986 79999999999999999998888 66666655433211 0 13556675 46789999999988
Q ss_pred HHHHHHHHhc
Q psy6089 256 LHVYQKIMTL 265 (313)
Q Consensus 256 ~~l~~~L~~a 265 (313)
..+++.|...
T Consensus 720 ~~~~~~L~~~ 729 (985)
T TIGR01372 720 ARVLQHLEEW 729 (985)
T ss_pred HHHHHHHHHh
Confidence 8888887664
No 39
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only]
Probab=71.72 E-value=10 Score=35.40 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=53.7
Q ss_pred ceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEECCcccEE---EEecCCCCCceEEEEeccccHHHH
Q psy6089 183 YITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIGYASDVK---LMGFTHTGEPGYCLYIPSEYALHV 258 (313)
Q Consensus 183 ~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~~~~~v~---~~R~~~~Ge~G~el~~~~~~a~~l 258 (313)
...+.+.+ ++++|.|+|+.+.+.|+.++..|+ .++.........-. +..+ .+|....+ ++|-+.++.+....+
T Consensus 13 ~~~l~~l~-~~~li~V~G~D~~kfLq~q~T~dv~~l~~g~~~~~a~l~-~qGrv~~~~~~~~~~-d~~~l~~~~~~~~~~ 89 (305)
T COG0354 13 PLTLVLLS-DRALIRVSGADAEKFLQGQLTNDVSALAEGQSTLAALLT-PQGRVLFDFRLYRRG-DGLYLDTDKSVLEAL 89 (305)
T ss_pred ccEEEecC-CceeEEEECCCHHHHHhHHHHHhHhhcccCceeeeeEEC-CCceEEEEEEEEEeC-CeEEEEcchhhcHHH
Confidence 34555555 579999999999999999988888 66665544332211 1111 12332233 799999999999988
Q ss_pred HHHHHh
Q psy6089 259 YQKIMT 264 (313)
Q Consensus 259 ~~~L~~ 264 (313)
...|..
T Consensus 90 l~~L~k 95 (305)
T COG0354 90 LKRLKK 95 (305)
T ss_pred HHHHHh
Confidence 888753
No 40
>PF06978 POP1: Ribonucleases P/MRP protein subunit POP1; InterPro: IPR009723 This entry represents a conserved region approximately 150 residues long located towards the N terminus of the POP1 subunit that is common to both the RNase MRP and RNase P ribonucleoproteins (3.1.26.5 from EC) []. These RNA-containing enzymes generate mature tRNA molecules by cleaving their 5' ends.; GO: 0004526 ribonuclease P activity, 0001682 tRNA 5'-leader removal
Probab=64.54 E-value=6.9 Score=33.84 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=25.2
Q ss_pred cHHHHHHHHHcCeEEEeCCCceEEEEEccC
Q psy6089 81 FMEEEYRACFEGVGIIDMSSFSKIKITCSD 110 (313)
Q Consensus 81 ~~~~E~~a~r~~~~l~Dls~~~~i~v~~~G 110 (313)
+...-|++.+.++.++|.|+++.|+|+ |
T Consensus 159 ~~R~~~Ra~~~~~~~~D~SY~~~i~l~--g 186 (187)
T PF06978_consen 159 SFRATYRASKHGCVLHDASYYSCIELE--G 186 (187)
T ss_pred chhHHHHHhcCCEEEEecccceeEEEE--e
Confidence 456678899999999999999999999 7
No 41
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=63.79 E-value=12 Score=26.88 Aligned_cols=50 Identities=18% Similarity=0.253 Sum_probs=35.0
Q ss_pred eEEEEEccCchHHHHHhhhcccCcccCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEE
Q psy6089 102 SKIKITCSDESLVDWLQQLCSNDVNIPVGGISHTGMQNERGGYENDCILVRETETSYFM 160 (313)
Q Consensus 102 ~~i~v~~~G~dA~~fL~~l~t~di~l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l 160 (313)
||+-. =|+..+=|=.+.+..+.. . -+.++|++|.-++|+.+.|-+ |+.++
T Consensus 19 GKvi~---lP~SleeLl~ia~~kfg~----~-~~~v~~~dgaeIdDI~~IRDg-D~L~~ 68 (69)
T PF11834_consen 19 GKVIW---LPDSLEELLKIASEKFGF----S-ATKVLNEDGAEIDDIDVIRDG-DHLYL 68 (69)
T ss_pred CEEEE---cCccHHHHHHHHHHHhCC----C-ceEEEcCCCCEEeEEEEEEcC-CEEEE
Confidence 55533 356666665555655542 2 577899999999999999976 66665
No 42
>KOG2844|consensus
Probab=59.59 E-value=55 Score=34.03 Aligned_cols=90 Identities=14% Similarity=0.163 Sum_probs=64.3
Q ss_pred HHHHHHHHHcCeEEEeCC-CceEEEEEccCchHHHHHhhhcccCcc---cCCCCEEEeeeecCCCeeEEEEEEEEecCCe
Q psy6089 82 MEEEYRACFEGVGIIDMS-SFSKIKITCSDESLVDWLQQLCSNDVN---IPVGGISHTGMQNERGGYENDCILVRETETS 157 (313)
Q Consensus 82 ~~~E~~a~r~~~~l~Dls-~~~~i~v~~~G~dA~~fL~~l~t~di~---l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~ 157 (313)
+.+|...-+.+|-|.|++ ..+.|.|. ||.+.+.||-++-.|++ .+.-+.. .++--.--+--+.|...||=.
T Consensus 597 i~k~~~~~~~~v~l~DvT~~~~~l~i~--GP~sR~vLqelt~~dls~~~fp~~~~k---~l~vg~~girairis~~GELG 671 (856)
T KOG2844|consen 597 IKKEMPKGGSNVELKDVTDELGALSII--GPQSRKVLQELTDADLSDDHFPFLTTK---ELKVGNAGIRAIRISHTGELG 671 (856)
T ss_pred HHHHhhccCCceeeeechhhhceeeec--CchHHHHHHhccCCCCCccccCcceee---eeeccccceEEEEEEeccccc
Confidence 455555558899999999 67999999 99999999999999996 3433333 233333334445566678778
Q ss_pred EEEEcCCcchHHHHHHHHh
Q psy6089 158 YFMVSPTSQQTRVFEWMKN 176 (313)
Q Consensus 158 ~~l~~~~~~~~~~~~~L~~ 176 (313)
|.|-.|...+..+.+.|.+
T Consensus 672 ~~Lyip~e~~~~vY~~im~ 690 (856)
T KOG2844|consen 672 WELYIPNEDAVAVYRAIMN 690 (856)
T ss_pred eEEEechHHHHHHHHHHHh
Confidence 8888888877666666544
No 43
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=58.71 E-value=6.8 Score=38.47 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=22.4
Q ss_pred CCcccccccchhHHHHHHhHHcCCCCCC
Q psy6089 1 MNGNSLQGAGGIGRAVAEWMTHGEATQE 28 (313)
Q Consensus 1 ~ns~g~~~~gG~g~~la~wi~~g~~~~d 28 (313)
++..||+.+..+|+.||++|..++++++
T Consensus 372 ~~G~Gv~~a~~~G~~lA~li~g~~~~~~ 399 (460)
T TIGR03329 372 YSGNGVAPSRMGGQILSSLVLGLDNPWT 399 (460)
T ss_pred cCCCChhHHHHHHHHHHHHhcCCCCccc
Confidence 3567999999999999999976665433
No 44
>KOG2770|consensus
Probab=49.55 E-value=65 Score=30.68 Aligned_cols=76 Identities=21% Similarity=0.328 Sum_probs=55.1
Q ss_pred eEEEeCCCceEEEEEccCchHHHHHhhhcc--cCcc-cCCCCEEEeeeecCCCeeEEEEEEEE---ecCCeEEEEcCCcc
Q psy6089 93 VGIIDMSSFSKIKITCSDESLVDWLQQLCS--NDVN-IPVGGISHTGMQNERGGYENDCILVR---ETETSYFMVSPTSQ 166 (313)
Q Consensus 93 ~~l~Dls~~~~i~v~~~G~dA~~fL~~l~t--~di~-l~~G~~~~t~~ln~~G~i~~d~~v~r---~~~d~~~l~~~~~~ 166 (313)
|.+--+...+.+.+. ||.+.+-||.+++ .|+. ++=|+..+.-+ +|.. -+.|.| .|||.|-|.++.+.
T Consensus 163 v~~~~~~~r~l~A~Q--gp~~akvlq~l~~k~~DL~~l~fg~~~~~~~---~G~~--~~~vtr~gytgEDGfeisv~~~~ 235 (401)
T KOG2770|consen 163 VSWETLDGRSLLALQ--GPEAAKVLQKLLSKLGDLSKLPFGQSQVYDF---KGGP--GCRVTRGGYTGEDGFEISVPPEG 235 (401)
T ss_pred eeEEEecccchhhhc--ChHHHHHHHHhhccccchhcccccceEEEEe---cCCC--ceEEeccccccCCceEEecCCch
Confidence 444223367888888 9999999999999 7887 77787765433 4442 244555 47899999999888
Q ss_pred hHHHHHHHH
Q psy6089 167 QTRVFEWMK 175 (313)
Q Consensus 167 ~~~~~~~L~ 175 (313)
+..+.+.|-
T Consensus 236 Av~la~~LL 244 (401)
T KOG2770|consen 236 AVDLAETLL 244 (401)
T ss_pred hHHHHHHHh
Confidence 877776653
No 45
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=31.76 E-value=2.9e+02 Score=23.58 Aligned_cols=93 Identities=14% Similarity=0.197 Sum_probs=58.6
Q ss_pred chHHHHHHHHhhCCCCCceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEECCcccEEEEecCCCCCc
Q psy6089 166 QQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIGYASDVKLMGFTHTGEP 244 (313)
Q Consensus 166 ~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~ 244 (313)
..+.....++.|.-.+..|..- -..-.+|.|.+|.-..+-=.+...|| .+|.+.--.++++-.+.+.++|. |+-.+
T Consensus 80 ~del~akF~~EH~H~d~EvRy~--vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRl-F~~~~ 156 (181)
T COG1791 80 LDELRAKFLQEHLHTDDEVRYF--VAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRL-FTEPE 156 (181)
T ss_pred HHHHHHHHHHHhccCCceEEEE--EecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEE-eeCCC
Confidence 3455666778887655555553 34558899998874433222334577 88888766666665566888887 66678
Q ss_pred eEEEEeccccHHHHHHH
Q psy6089 245 GYCLYIPSEYALHVYQK 261 (313)
Q Consensus 245 G~el~~~~~~a~~l~~~ 261 (313)
||--+-..+.....+..
T Consensus 157 gWVa~ytg~di~~~~~~ 173 (181)
T COG1791 157 GWVAIYTGDDIADRFPK 173 (181)
T ss_pred CceeeecCchhHHHHHH
Confidence 88666555554444443
No 46
>COG4044 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.25 E-value=2.4e+02 Score=24.90 Aligned_cols=81 Identities=19% Similarity=0.303 Sum_probs=45.2
Q ss_pred HHHHHHHHhhCCC-CCceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEECCcccEEEEecCCCCCce
Q psy6089 168 TRVFEWMKNHLPT-KHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIGYASDVKLMGFTHTGEPG 245 (313)
Q Consensus 168 ~~~~~~L~~~~~~-~~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G 245 (313)
+.+-..++..+.+ .-+++|.--..+|+.+.|.||....-.+.+. ..+ ..| +...+.-+ ++.+-|.---++.|
T Consensus 17 e~Lrs~v~~~lgdl~vk~eisvt~~~w~~itleGed~e~sanli~-eefgei~--sl~~~~~G---dv~vGrl~~l~~vg 90 (247)
T COG4044 17 EKLRSLVKNLLGDLDVKVEISVTKKQWAKITLEGEDEEVSANLIV-EEFGEIP--SLSKVEEG---DVYVGRLIDLGKVG 90 (247)
T ss_pred HHHHHHHHHhhhceeEEEEEEeecccceEEEEECccHHHHHHHHH-HHhCCCC--ccccCCCC---cEEEEEEeeeccce
Confidence 3333444444442 1345555557899999999999654322221 111 122 11122222 47777777778889
Q ss_pred EEEEecccc
Q psy6089 246 YCLYIPSEY 254 (313)
Q Consensus 246 ~el~~~~~~ 254 (313)
|-++++...
T Consensus 91 yg~yvdigV 99 (247)
T COG4044 91 YGAYVDIGV 99 (247)
T ss_pred eEEEccccc
Confidence 999987644
No 47
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=24.24 E-value=47 Score=26.91 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=20.1
Q ss_pred cccchhHHHHHHhHHcCCCC-CCcccc
Q psy6089 7 QGAGGIGRAVAEWMTHGEAT-QELLSF 32 (313)
Q Consensus 7 ~~~gG~g~~la~wi~~g~~~-~d~~~~ 32 (313)
.||||+||.+-+-+-.--|+ .+++++
T Consensus 7 GQGGGiG~~iv~~lr~~~~~~~eI~Al 33 (131)
T PF12953_consen 7 GQGGGIGKQIVEKLRKELPEEVEIIAL 33 (131)
T ss_pred CCCChhHHHHHHHHHHhCCCCcEEEEE
Confidence 48999999999999887776 555544
No 48
>COG2199 c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction mechanisms]
Probab=23.63 E-value=1.9e+02 Score=23.75 Aligned_cols=56 Identities=13% Similarity=0.274 Sum_probs=37.4
Q ss_pred CeEEEeCCCceEEE-EEccCchHHHHHhhhcccCcc--cCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcc
Q psy6089 92 GVGIIDMSSFSKIK-ITCSDESLVDWLQQLCSNDVN--IPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQ 166 (313)
Q Consensus 92 ~~~l~Dls~~~~i~-v~~~G~dA~~fL~~l~t~di~--l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~ 166 (313)
.+.++|+.+|..|- -. |.+.-+-+=..+++-+. +.++. .+.|+|.|+|.++.+...
T Consensus 53 ~l~~iDiD~Fk~iND~~--Gh~~GD~vL~~va~~L~~~~~~~~-----------------~~~R~gGdEF~i~l~~~~ 111 (181)
T COG2199 53 ALLLLDLDHFKQINDTY--GHAAGDEVLREVARRLRSNLREGD-----------------LVARLGGDEFAVLLPGTS 111 (181)
T ss_pred EEEEEeCcCCccccccc--cchHHHHHHHHHHHHHHHhcCCCC-----------------EEEEeccceeEEEeCCCC
Confidence 78889999999876 44 65544444333444443 22222 478999999999988765
No 49
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=21.17 E-value=92 Score=25.82 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=15.1
Q ss_pred CEEEeeeecCCCeeEEEEEE
Q psy6089 131 GISHTGMQNERGGYENDCIL 150 (313)
Q Consensus 131 ~~~~t~~ln~~G~i~~d~~v 150 (313)
..++.+++|++|++++-+.+
T Consensus 19 ~~~~~v~ld~~G~v~d~~~~ 38 (150)
T PF14639_consen 19 DAVFCVVLDENGEVLDHLKL 38 (150)
T ss_dssp S-EEEEEE-TTS-EEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEEE
Confidence 57889999999999998877
No 50
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.65 E-value=98 Score=24.26 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=23.9
Q ss_pred ceEEEEeccccHHHHHHHHHhcCccCCceecCc
Q psy6089 244 PGYCLYIPSEYALHVYQKIMTLGKDYNARDVGM 276 (313)
Q Consensus 244 ~G~el~~~~~~a~~l~~~L~~ag~~~g~~~~G~ 276 (313)
.-|++++|.++...+-++|.++| +...|-
T Consensus 6 ~K~~vyVP~~~~e~vr~aL~~aG----ag~iG~ 34 (109)
T COG3323 6 YKIEVYVPEEYVEQVRDALFEAG----AGHIGN 34 (109)
T ss_pred eEEEEEeCHHHHHHHHHHHHhcC----Ccceec
Confidence 46899999999999999999985 555553
Done!