Query psy6089
Match_columns 313
No_of_seqs 212 out of 1759
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 17:18:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pj5_A N,N-dimethylglycine oxi 100.0 3.1E-64 1.1E-68 522.8 26.2 303 5-313 361-724 (830)
2 1yx2_A Aminomethyltransferase; 100.0 4.7E-59 1.6E-63 442.2 27.1 259 33-313 4-265 (365)
3 1wos_A Aminomethyltransferase; 100.0 5.9E-59 2E-63 441.3 24.8 258 35-313 2-261 (364)
4 3gir_A Aminomethyltransferase; 100.0 7.3E-59 2.5E-63 443.4 21.0 251 33-313 32-285 (393)
5 3tfi_A GCVT-like aminomethyltr 100.0 1.7E-57 5.9E-62 431.5 20.2 255 33-313 11-269 (369)
6 1v5v_A Aminomethyltransferase; 100.0 7E-57 2.4E-61 431.9 24.2 259 34-313 5-294 (401)
7 1vlo_A Aminomethyltransferase; 100.0 8.2E-57 2.8E-61 428.5 22.8 256 28-313 8-270 (381)
8 1wsr_A Aminomethyltransferase; 100.0 9.6E-57 3.3E-61 427.7 21.4 255 34-313 5-267 (375)
9 2gag_A Heterotetrameric sarcos 100.0 1.6E-54 5.6E-59 455.6 25.8 243 68-313 591-850 (965)
10 3ttg_A Putative aminomethyltra 100.0 4.7E-52 1.6E-56 392.3 17.4 232 74-313 13-256 (355)
11 1vly_A SPOT PR51, unknown prot 100.0 1.8E-44 6.3E-49 338.5 22.8 205 90-313 28-237 (338)
12 2gag_C Heterotetrameric sarcos 100.0 7.4E-34 2.5E-38 249.1 15.5 168 89-277 28-204 (210)
13 1x31_C Sarcosine oxidase gamma 100.0 1.3E-33 4.5E-38 246.9 12.6 166 89-275 26-200 (206)
14 2gag_C Heterotetrameric sarcos 97.5 0.00056 1.9E-08 59.1 10.5 78 92-177 111-192 (210)
15 1x31_C Sarcosine oxidase gamma 97.4 0.00076 2.6E-08 58.1 10.3 78 92-177 109-190 (206)
16 2bry_A NEDD9 interacting prote 97.3 1.7E-05 5.8E-10 77.3 -2.8 61 1-66 414-477 (497)
17 3gir_A Aminomethyltransferase; 93.1 0.78 2.7E-05 43.0 11.5 86 182-271 74-165 (393)
18 1wos_A Aminomethyltransferase; 92.6 0.56 1.9E-05 43.3 9.7 79 91-177 130-213 (364)
19 1v5v_A Aminomethyltransferase; 92.0 0.74 2.5E-05 43.2 9.8 76 183-262 46-127 (401)
20 1wsr_A Aminomethyltransferase; 91.2 0.82 2.8E-05 42.4 9.1 80 182-265 46-131 (375)
21 1yx2_A Aminomethyltransferase; 90.7 0.72 2.5E-05 42.6 8.2 80 183-266 46-131 (365)
22 1vlo_A Aminomethyltransferase; 90.6 1.3 4.5E-05 41.2 9.9 79 183-265 55-140 (381)
23 1vly_A SPOT PR51, unknown prot 89.7 1.6 5.6E-05 39.8 9.7 79 183-266 30-114 (338)
24 3tfi_A GCVT-like aminomethyltr 89.6 2.2 7.6E-05 39.4 10.6 79 90-177 140-223 (369)
25 3pvc_A TRNA 5-methylaminomethy 88.7 0.11 3.9E-06 52.1 1.0 48 1-52 627-677 (689)
26 3ttg_A Putative aminomethyltra 88.3 2.3 7.9E-05 39.1 9.6 79 183-266 35-120 (355)
27 3geh_A MNME, tRNA modification 87.7 3.8 0.00013 39.1 11.1 85 191-279 22-120 (462)
28 3geh_A MNME, tRNA modification 87.1 2 6.8E-05 41.1 8.7 65 99-165 22-96 (462)
29 3gee_A MNME, tRNA modification 85.6 2.5 8.6E-05 40.5 8.5 64 99-165 28-104 (476)
30 3gee_A MNME, tRNA modification 83.8 6.3 0.00022 37.7 10.4 85 191-279 28-128 (476)
31 1pj5_A N,N-dimethylglycine oxi 83.2 3.2 0.00011 42.5 8.5 78 92-177 591-676 (830)
32 2gag_A Heterotetrameric sarcos 81.9 5.9 0.0002 41.3 10.1 80 182-265 622-707 (965)
33 1xzp_A Probable tRNA modificat 75.2 4 0.00014 39.2 5.9 51 99-153 46-97 (482)
34 3dje_A Fructosyl amine: oxygen 60.1 2.4 8.3E-05 39.4 0.8 26 1-26 362-387 (438)
35 1xzp_A Probable tRNA modificat 43.3 74 0.0025 30.2 8.3 86 191-280 46-141 (482)
36 1rij_A E6APN1 peptide; Trp-CAG 28.0 24 0.00081 18.7 1.1 14 14-27 4-17 (26)
No 1
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=100.00 E-value=3.1e-64 Score=522.84 Aligned_cols=303 Identities=22% Similarity=0.402 Sum_probs=283.4
Q ss_pred cccccchhHHHHHHhHHcCCCCCCccccCccccccccCCHHHHHhhhhcccccccccCCCCC------------------
Q psy6089 5 SLQGAGGIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIREVVGSTYRVGDPRP------------------ 66 (313)
Q Consensus 5 g~~~~gG~g~~la~wi~~g~~~~d~~~~d~~Rf~~~~~~~~~~~~r~~e~~~~~~~~~~p~~------------------ 66 (313)
|+++|+|+|+.||+||.+|+|++|+..+|++||.+...+++|++.|+.|.++..|.++||++
T Consensus 361 G~~~ap~~g~~la~li~~~~~~~dl~~~~~~Rf~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~tpl~~~~~ 440 (830)
T 1pj5_A 361 WVTHSAGVAKAMAELLTTGRSETDLGECDITRFEDVQLTPEYVSETSQQNFVEIYDVLHPLQPRLSPRNLRVSPFHARHK 440 (830)
T ss_dssp CGGGHHHHHHHHHHHHHHSSCSSCCTTTBGGGCCGGGGSHHHHHHHHHHHHHTTTCCCCTTCCCSSSCCSBCCTTHHHHH
T ss_pred hHHhhHHHHHHHHHHHhCCCCCccccccChhhhccccCCHHHHHHHHHHHHHHhhccCCCCCccccccccccCcCHHHHH
Confidence 78999999999999999999999999999999998888999999999999999999999987
Q ss_pred -----CCCCCccCCcccccc----------------------------HHHHHHHHHcCeEEEeCCCceEEEEEccCchH
Q psy6089 67 -----EMPPGTFFKPKFFDF----------------------------MEEEYRACFEGVGIIDMSSFSKIKITCSDESL 113 (313)
Q Consensus 67 -----~~~~~~~~~p~~~~~----------------------------~~~E~~a~r~~~~l~Dls~~~~i~v~~~G~dA 113 (313)
+.+..+|++|.||.. +.+||+++|++|+|||+|||++|+|+ |+||
T Consensus 441 ~~ga~~~~~~g~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~a~r~~~gl~d~s~~~~~~v~--G~da 518 (830)
T 1pj5_A 441 ELGAFFLEAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAAAEAWKTRTAVAMYDMTPLKRLEVS--GPGA 518 (830)
T ss_dssp HTTEEEEEETTEEEEEEEGGGGGGGGGSCGGGCCCCCCHHHHTTCCTHHHHHHHHHHHSCEEEECTTSCEEEEE--STTH
T ss_pred HcCCEEEEECCEecccccCCcccccccccccccccccccccccccchhHHHHHHHHHhCeEEEEcCcEEEEEEE--CcCH
Confidence 335678999999876 78999999999999999999999999 9999
Q ss_pred HHHHhhhcccCcccCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchHHHHHHHHhhCCCC------Cc-eEE
Q psy6089 114 VDWLQQLCSNDVNIPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTK------HY-ITL 186 (313)
Q Consensus 114 ~~fL~~l~t~di~l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~~~------~~-V~i 186 (313)
.+|||+++||||++++|+++||+|||++|+|++|++|+|+++++|+| ++..+.+++||++++... .+ |+|
T Consensus 519 ~~fL~~~~t~dv~l~~g~~~y~~~l~~~G~i~~d~~v~~~~~~~~~l---~~~~~~~~~~l~~~~~~~~~~~~~~~~v~i 595 (830)
T 1pj5_A 519 LKLLQELTTADLAKKPGAVTYTLLLDHAGGVRSDITVARLSEDTFQL---GANGNIDTAYFERAARHQTQSGSATDWVQV 595 (830)
T ss_dssp HHHHHHHBSSCCCSCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEE---ECSSHHHHHHHHHHHHHHHHHSCTTCCCEE
T ss_pred HHHHHHhccccccCCCCcEEEeEEECCCCEEEEeEEEEEEeCCEEEE---EeCHHHHHHHHHHHhhhcccccCCCCeEEE
Confidence 99999999999988899999999999999999999999999888887 344567999999986521 26 999
Q ss_pred EEecCCeEEEEEeCccHHHHHhhccccCC---CCCCcceEEEEECCcccEEEEecCCCCCceEEEEeccccHHHHHHHHH
Q psy6089 187 SDVTSKYTVINVVGPKAKQLLSELCDEDI---NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIM 263 (313)
Q Consensus 187 ~d~t~~~~~l~l~GP~a~~vL~~l~~~dl---~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G~el~~~~~~a~~l~~~L~ 263 (313)
+|+|+++++|+||||+|+++|+++++.|+ ++||++++.+++++ .+++++|++|+||+||||++|.+.+..+|++|+
T Consensus 596 ~d~s~~~~~~~l~Gp~a~~~l~~~~~~dl~~~~~~~~~~~~~~~~g-~~~~~~r~~~tge~g~ei~~~~~~~~~l~~~l~ 674 (830)
T 1pj5_A 596 RDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGG-IPVTAMRLSYVGELGWELYTSADNGQRLWDALW 674 (830)
T ss_dssp EECGGGEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETT-EEEEEECCCTTSSSEEEEEEEHHHHHHHHHHHH
T ss_pred EEccCCEEEEEEECcCHHHHHHHhcCcCCccccCCCceEEEEEECC-EEEEEEECcccCCCcEEEEecHHHHHHHHHHHH
Confidence 99999999999999999999999988777 48999999999988 579999999999999999999999999999999
Q ss_pred hcCccCCceecCccchhhhhhcccCCcccCCCCCCCCcccccCCccccCC
Q psy6089 264 TLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKLD 313 (313)
Q Consensus 264 ~ag~~~g~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eagl~~~v~~~ 313 (313)
++|+++|+.|+|+.||++||||+|+|.||+|++++++|+|+||+|+|+|+
T Consensus 675 ~ag~~~~~~~~g~~a~~~lRle~G~~~~g~d~~~~~~P~e~~l~~~v~~~ 724 (830)
T 1pj5_A 675 QAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEAGLGFAVKMA 724 (830)
T ss_dssp HHHGGGTCEEECHHHHHHHHHHTTCCCBTTTBCTTSCTTTTTCGGGCCTT
T ss_pred hhhhhcCCEEehhhhhhhhhhhcCCccccccCCCCCCHHHCCCcCeeeCC
Confidence 99999999999999999999999999999999999999999999999985
No 2
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=100.00 E-value=4.7e-59 Score=442.15 Aligned_cols=259 Identities=27% Similarity=0.485 Sum_probs=245.0
Q ss_pred CccccccccCCHHHHHhhhhcccccccccCCCCCCCCCCccCCccccccHHHHHHHHHcCeEEEeCCCceEEEEEccCch
Q psy6089 33 DVQRFLDLHNNRQYLQQRIREVVGSTYRVGDPRPEMPPGTFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDES 112 (313)
Q Consensus 33 d~~Rf~~~~~~~~~~~~r~~e~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~E~~a~r~~~~l~Dls~~~~i~v~~~G~d 112 (313)
++|| +|++..|.-+.+|+.++.| |++|.||+++.+||+|+|++++|||+|||++|+|+ |+|
T Consensus 4 ~~~~-tpl~~~~~~~ga~~~~~~g----------------~~~p~~y~~~~~E~~a~r~~~gl~dls~~~~i~v~--G~d 64 (365)
T 1yx2_A 4 MLKR-TPLFDLYKEYGGKTIDFGG----------------WELPVQFSSIKKEHEAVRTAAGLFDVSHMGEVEVS--GND 64 (365)
T ss_dssp -CBC-CTTGGGHHHHTCEEEEETT----------------EEEEEESSCHHHHHHHHHHSEEEEECTTSEEEEEE--STT
T ss_pred cccc-CccHHHHHHcCCEEEeECC----------------EEhhhhcCCHHHHHHHHHhCcEEEECCCeEEEEEE--CCC
Confidence 3455 8999999999988877766 67888998999999999999999999999999999 999
Q ss_pred HHHHHhhhcccCcc-cCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchHHHHHHHHhhCCCCCceEEEEecC
Q psy6089 113 LVDWLQQLCSNDVN-IPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTS 191 (313)
Q Consensus 113 A~~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~ 191 (313)
|.+|||+++|||++ +++|+++||++||++|+|++|++|+|+++++|+|+++++..+++++||++++. .+|+|+|+|+
T Consensus 65 a~~fLq~l~t~dv~~l~~g~~~y~~~ln~~G~i~~d~~v~r~~~d~~ll~~~a~~~~~~~~~L~~~~~--~~V~i~d~s~ 142 (365)
T 1yx2_A 65 SLSFLQRLMTNDVSALTPGRAQYTAMCYPDGGTVDDLLIYQKGENRYLLVINASNIDKDLAWMKEHAA--GDVQIDNQSD 142 (365)
T ss_dssp HHHHHHHHBSSCGGGCCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHTCC--SSCEEEECTT
T ss_pred HHHHHHHhcccccccCCCCCEEEEEEECCCCeEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHhhcc--CCeEEEECcC
Confidence 99999999999998 89999999999999999999999999998899999999999999999999976 5899999999
Q ss_pred CeEEEEEeCccHHHHHhhccccCC-CCCCcceE-EEEECCcccEEEEecCCCCCceEEEEeccccHHHHHHHHHhcCccC
Q psy6089 192 KYTVINVVGPKAKQLLSELCDEDI-NLHPFSYK-RTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDY 269 (313)
Q Consensus 192 ~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~-~~~i~~~~~v~~~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~ 269 (313)
++++++|+||+|+++|+++++.|+ .+|++++. .+.+++ .++++.|++|+||+||||++|.+.+..+|++|+++|++|
T Consensus 143 ~~~~lal~Gp~a~~~L~~l~~~dl~~~~~~~~~~~~~~~g-~~~~i~R~g~tge~G~el~~~~~~a~~l~~~L~~ag~~~ 221 (365)
T 1yx2_A 143 QIALLAVQGPKAEAILKNLTDADVSALKPFAFIDEADISG-RKALISRTGYTGEDGYEIYCRSDDAMHIWKKIIDAGDAY 221 (365)
T ss_dssp TEEEEEEESTTHHHHHHTTBSSCGGGCCTTBEEEEEEETT-EEEEEESCCSSSSSEEEEEEEGGGHHHHHHHHHHHHGGG
T ss_pred CEEEEEEECcCHHHHHHHhhCCChhhCCcceeEEEEEECC-eEEEEEeCcccCCCEEEEEEcHHHHHHHHHHHHhcchhc
Confidence 999999999999999999998888 89999888 888887 569999999999999999999999999999999999999
Q ss_pred CceecCccchhhhhhcccCCcccCCCCCCCCcccccCCccccCC
Q psy6089 270 NARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKLD 313 (313)
Q Consensus 270 g~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eagl~~~v~~~ 313 (313)
|+.|+|+.||++||||+|+|.||+|++++++|+|+||+|.|+|+
T Consensus 222 g~~~~g~~a~~~lRieaG~p~~g~d~~~~~~P~e~~l~~~V~~~ 265 (365)
T 1yx2_A 222 GLIPCGLGARDTLRFEANIPLYGQELTRDITPIEAGIGFAVKHK 265 (365)
T ss_dssp TEEEECHHHHHHHHHHTTCCCBTTTBSTTCCTTTTTCGGGCCTT
T ss_pred CceeCCHHHHHHhHHhcCCCcCccccCCCCCHHHCCccceecCC
Confidence 99999999999999999999999999999999999999999985
No 3
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Probab=100.00 E-value=5.9e-59 Score=441.31 Aligned_cols=258 Identities=24% Similarity=0.445 Sum_probs=243.4
Q ss_pred cccccccCCHHHHHhhhhcccccccccCCCCCCCCCCccCCccccccHHHHHHHHHcCeEEEeCCCceEEEEEccCchHH
Q psy6089 35 QRFLDLHNNRQYLQQRIREVVGSTYRVGDPRPEMPPGTFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLV 114 (313)
Q Consensus 35 ~Rf~~~~~~~~~~~~r~~e~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~E~~a~r~~~~l~Dls~~~~i~v~~~G~dA~ 114 (313)
|| +|++..|.-+.+|+.++.| |++|.||+++.+||+|+|++++|||+|||++|+|+ |+||.
T Consensus 2 ~~-tpl~~~~~~~ga~~~~~~g----------------~~~p~~y~~~~~E~~a~r~~~gl~dls~~~~i~v~--G~da~ 62 (364)
T 1wos_A 2 KR-TPLFEKHVELGAKMVDFAG----------------WEMPLYYTSIFEEVMAVRKSVGMFDVSHMGEFLVK--GPEAV 62 (364)
T ss_dssp BC-CTTHHHHHHTTCEEEEETT----------------EEEEEESSCHHHHHHHHHHSCEEEECTTSEEEEEE--STTHH
T ss_pred CC-CccHHHHHHCCCEEEeECC----------------EEhhhhhCCHHHHHHHHHhCeEEEECCCcEEEEEE--CCCHH
Confidence 44 7888888777777776665 67888998999999999999999999999999999 99999
Q ss_pred HHHhhhcccCcc-cCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchHHHHHHHHhhCCCCCceEEEEecCCe
Q psy6089 115 DWLQQLCSNDVN-IPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKY 193 (313)
Q Consensus 115 ~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~ 193 (313)
+|||+++|||++ +++|+++||++||++|+|++|++|+|+++++|+|+++++..+.+++||++++.. .+|+|+|+|+++
T Consensus 63 ~fL~~l~t~dv~~l~~g~~~yt~~ln~~G~i~~d~~v~r~~~d~~ll~~~a~~~~~~~~~L~~~~~~-~~V~i~d~s~~~ 141 (364)
T 1wos_A 63 SFIDFLITNDFSSLPDGKAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKN-FDVEVSNISDTT 141 (364)
T ss_dssp HHHHHHBSSCCTTCCTTEEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHTTCTT-SSCEEEECGGGE
T ss_pred HHHHHhcccccccCCCCCEEEEEEECCCCeEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHHhccC-CCEEEEECcCCE
Confidence 999999999998 899999999999999999999999999988999999999999999999999764 589999999999
Q ss_pred EEEEEeCccHHHHHhhccccCC-CCCCcceEEEEECCcccEEEEecCCCCCceEEEEeccccHHHHHHHHHhcCccCCce
Q psy6089 194 TVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDYNAR 272 (313)
Q Consensus 194 ~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~g~~ 272 (313)
++++|+||+|+++|+++++.|+ .+|++++..+.+++ .++++.|++|+||+||||++|.+.+..+|++|+++|++||+.
T Consensus 142 ~~l~l~Gp~a~~~L~~l~~~dl~~l~~~~~~~~~~~g-~~~~i~R~g~tge~G~ei~~~~~~a~~l~~~L~~ag~~~g~~ 220 (364)
T 1wos_A 142 ALIAFQGPKAQETLQELVEDGLEEIAYYSFRKSIVAG-VETLVSRTGYTGEDGFELMLEAKNAPKVWDALMNLLRKIDGR 220 (364)
T ss_dssp EEEEEESTTHHHHHGGGBSSCSTTSCTTBEEEEEETT-EEEEEESCCSSSSSEEEEEEEGGGHHHHHHHHHHHHHHHTCE
T ss_pred EEEEEECcCHHHHHHHhhCCCccccCccceEEEEECC-eEEEEEecCCCCCCeEEEEEeHHHHHHHHHHHHhcchhcCce
Confidence 9999999999999999998888 89999999899987 569999999999999999999999999999999999999999
Q ss_pred ecCccchhhhhhcccCCcccCCCCCCCCcccccCCccccCC
Q psy6089 273 DVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKLD 313 (313)
Q Consensus 273 ~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eagl~~~v~~~ 313 (313)
|+|+.||++||||+|+|.||+|++++++|+|+||+|.|+|+
T Consensus 221 ~~g~~a~~~lRie~G~p~~g~d~~~~~~P~e~~l~~~V~~~ 261 (364)
T 1wos_A 221 PAGLGARDVCRLEATYLLYGQDMDENTNPFEVGLSWVVKLN 261 (364)
T ss_dssp ECCHHHHHHHHHHTTCCCBTTTBCTTSCGGGGTCGGGCCTT
T ss_pred eCCHHHHhhhhHhcCCcCcccccCCCCCHHHCCcccccCCC
Confidence 99999999999999999999999999999999999999985
No 4
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}
Probab=100.00 E-value=7.3e-59 Score=443.36 Aligned_cols=251 Identities=18% Similarity=0.240 Sum_probs=233.4
Q ss_pred CccccccccCCHHHHHhhhhcccccccccCCCCCCCCCCccCCccccc-cHHHHHHHHHcCeEEEeCCCceEEEEEccCc
Q psy6089 33 DVQRFLDLHNNRQYLQQRIREVVGSTYRVGDPRPEMPPGTFFKPKFFD-FMEEEYRACFEGVGIIDMSSFSKIKITCSDE 111 (313)
Q Consensus 33 d~~Rf~~~~~~~~~~~~r~~e~~~~~~~~~~p~~~~~~~~~~~p~~~~-~~~~E~~a~r~~~~l~Dls~~~~i~v~~~G~ 111 (313)
++|| +|++..+.-+.+|+.++.| |++|.||. ++.+||+|+|++|+|||+|||++|+|+ ||
T Consensus 32 ~~r~-tpl~~~h~~~GA~~~~~~g----------------w~~P~~y~~~~~~E~~avR~~~gl~DvSh~g~i~V~--G~ 92 (393)
T 3gir_A 32 SLKT-LPLYELHEKAGAKFGAFAG----------------WRMPLTYPLGVLKEHLHTRAHAGLFDISHMKLIAVE--GP 92 (393)
T ss_dssp CCEE-CTTHHHHHHTTCEEEEETT----------------EEEEEECTTCHHHHHHHHHHSEEEEECTTSEEEEEE--ST
T ss_pred cccc-CcchHHHHHcCCEEEeeCC----------------EecchhhcCCHHHHHHHHHhCeEEEeCCCcEEEEEE--CC
Confidence 5677 9999888878887776665 67888887 899999999999999999999999999 99
Q ss_pred hHHHHHhhhcccCcc-cCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchHHHHHHHHhhCCCCCceEEEEec
Q psy6089 112 SLVDWLQQLCSNDVN-IPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVT 190 (313)
Q Consensus 112 dA~~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t 190 (313)
||.+|||+++||||+ +++|+++||+|||++|+|++|++|+|+++|+|+|+++++..+++++||++++.. .+|+| ++
T Consensus 93 DA~~fL~~l~tndv~~l~~G~~~yt~~ln~~G~i~dD~~V~rl~~d~~~lv~~a~~~~~~~~~L~~~~~~-~~V~i--~~ 169 (393)
T 3gir_A 93 KAVEFLSYALPVDAALLKIGQSRYSYLLNERAGILDDLILTRLAECRFMLVANAGNAQADFAELEKRAFG-FECQV--IA 169 (393)
T ss_dssp THHHHHHHHSSSCTTTSCTTBEEEEEEECTTCCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHHTTT-SSCEE--EE
T ss_pred CHHHHhhhhcccccccCCCCcEEEEEEECCCCcEEEEEEEEEecCCEEEEEECchhHHHHHHHHHhhccC-CceEE--EE
Confidence 999999999999998 899999999999999999999999999989999999999999999999999874 58999 77
Q ss_pred CCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEECCcccEEEEecCCCCCceEEEEeccccHHHHHHHHHhcCccC
Q psy6089 191 SKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDY 269 (313)
Q Consensus 191 ~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~ 269 (313)
+++++|+||||+|+++|+++++ |+ ++||++++.+++ +++++|++|+||+||||++|.+.+..+|++|+++ +
T Consensus 170 ~~~a~lalqGP~A~~vL~~l~~-~l~~~~~~~~~~~~i----~~~i~R~gytGE~G~Ei~~p~~~a~~lw~~L~~a---~ 241 (393)
T 3gir_A 170 LERVLLALQGPQAAAVLADAGL-PGNELLFMQGFEPQQ----DWFITRSGYTGEDGFEIALPIGCARALAEKLLGD---S 241 (393)
T ss_dssp CCCEEEEEESTTHHHHHHHTTC-CCTTCCTTBEECSST----TCEEESCCSSSSSEEEEEECHHHHHHHHHHHHTS---T
T ss_pred CCEEEEEEECccHHHHHHHhcC-chhhcccceeEEEEE----eEEEEeCCCCCCCeEEEEEEHHHHHHHHHHHHhc---C
Confidence 8899999999999999999988 88 899998876554 5899999999999999999999999999999987 3
Q ss_pred CceecCccchhhhhhcccCCcccCCCCCCCCcccccCCccccCC
Q psy6089 270 NARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKLD 313 (313)
Q Consensus 270 g~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eagl~~~v~~~ 313 (313)
|+.|+|+.||++||||+|+|.||+|++++++|+|+||+|+|+|+
T Consensus 242 g~~p~Gl~A~d~LRiEaG~p~~g~dl~~~~~P~EagL~~~V~~~ 285 (393)
T 3gir_A 242 RVEWVGLAARDSLRLEAGLCLHGNDITPDTTPIDAALTWAVPKN 285 (393)
T ss_dssp TEEECCHHHHHHHHHHTTCCCBTTTBCTTCCTTTTTCGGGSCHH
T ss_pred CceeccccchhhHHHhcCcccchhhcCCCCCHHHCCchheecCC
Confidence 89999999999999999999999999999999999999999873
No 5
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*
Probab=100.00 E-value=1.7e-57 Score=431.51 Aligned_cols=255 Identities=18% Similarity=0.317 Sum_probs=228.3
Q ss_pred CccccccccCCHHHHHhhhhcccccccccCCCCCCCCCCccCCccccccHHHHHHHHHcCeEEEeCCCceEEEEEccCch
Q psy6089 33 DVQRFLDLHNNRQYLQQRIREVVGSTYRVGDPRPEMPPGTFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDES 112 (313)
Q Consensus 33 d~~Rf~~~~~~~~~~~~r~~e~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~E~~a~r~~~~l~Dls~~~~i~v~~~G~d 112 (313)
++|| +|++..|.-+.+|+... .++|.+|.||+.+.+||+|+|++|+|||+|||++|+|+ |+|
T Consensus 11 ~~~~-tpl~~~h~~~Ga~~~~~---------------~~gw~~P~~y~~~~~E~~avR~~~glfDvSh~g~i~v~--G~D 72 (369)
T 3tfi_A 11 RLRS-TPYTSRIEKQGVTAYTI---------------YNHMLLPAAFGSIEDSYKHLKEHVQIWDVAAERQVEIS--GKD 72 (369)
T ss_dssp TBBC-CTTHHHHTTTTCCEEEE---------------ETTEEEEEESSCHHHHHHHHHHSCEEEECTTSCEEEEE--STT
T ss_pred ccCC-CccHHHHHHcCCeEEec---------------cCCEEcccccCCHHHHHHHHHcCeEEEeCCCCEEEEEE--CCC
Confidence 4556 88887776666664222 24788999999999999999999999999999999999 999
Q ss_pred HHHHHhhhcccCcc-cCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchHHHHHHHHhhCC-CCCceEEEEec
Q psy6089 113 LVDWLQQLCSNDVN-IPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLP-TKHYITLSDVT 190 (313)
Q Consensus 113 A~~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~-~~~~V~i~d~t 190 (313)
|.+|||+++|||++ +++|+++||++||++|+|++|++|+|+++++|+|++++.. +..||+++.. .+.+|+|++
T Consensus 73 A~~fL~~l~t~dv~~L~~G~~~yt~~ln~~G~i~dD~~v~r~~ed~~~l~~~~~~---~~~~l~~~~~~~~~~V~i~~-- 147 (369)
T 3tfi_A 73 SAELVQLMTCRDLSKSKIGRCYYCPIIDENGNLVNDPVVLKLDENKWWISIADSD---VIFFAKGLASGHKFDVKIVE-- 147 (369)
T ss_dssp HHHHHHHHBSSCCTTCCTTBEEECCEECTTSCEEECCEEEEEETTEEEEECCSSC---HHHHHHHHHHHHTCCCEEEC--
T ss_pred HHHHHhhhcccccccCCCCcEEEEEEECCCCCEEEEEEEEEecCCEEEEEECcHH---HHHHHHHhhhhcCCeEEEEE--
Confidence 99999999999998 8999999999999999999999999999999999887643 5678887642 235899986
Q ss_pred CCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEECCcccEEEEecCCCCCceEEEEecc-ccHHHHHHHHHhcCcc
Q psy6089 191 SKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPS-EYALHVYQKIMTLGKD 268 (313)
Q Consensus 191 ~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G~el~~~~-~~a~~l~~~L~~ag~~ 268 (313)
+++++|+||||+|+++|+++++.|+ ++||+++++++++| .+++++|++|+||+||||++|. +++.++|++|+++|++
T Consensus 148 ~~~a~lalqGP~A~~~L~~l~~~~l~~l~~~~~~~~~i~g-~~~~i~R~gytGE~G~Ei~~~~~~~a~~lw~~L~~ag~~ 226 (369)
T 3tfi_A 148 PVVDIMAIQGPKSFALMEKVFGKKITELKFFGFDYFDFEG-TKHLIARSGWSKQGGYEVYVENTQSGQKLYDHLFEVGKE 226 (369)
T ss_dssp CSCEEEEEESTTHHHHHHHHHCGGGGGCCTTBEEEEEETT-EEEEEESCCSSSSCEEEEEECSHHHHHHHHHHHHHHTGG
T ss_pred CCEEEEEEECccHHHHHHhhcCCchhhCCCceEEEEEECC-eEEEEEeCccCCCCeEEEEEecHHHHHHHHHHHHhhCcc
Confidence 6899999999999999999998888 89999999999988 5699999999999999999999 9999999999999999
Q ss_pred CCceecCccchhhhhhcccCCcccCCCCCCCCcccccCCccccCC
Q psy6089 269 YNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKLD 313 (313)
Q Consensus 269 ~g~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eagl~~~v~~~ 313 (313)
+|+.++|.. ++||||+|+|.||+|++++++|+|+||+|+|+|+
T Consensus 227 ~g~~~~~~~--~~lRlEaG~~~~g~d~~~~~~P~Eagl~~~V~~~ 269 (369)
T 3tfi_A 227 FNVGPGCPN--LIERIESALLSYGNDFDNNDNPFECGFDQYVSLD 269 (369)
T ss_dssp GTCEEECCC--HHHHHHTTCCCBTTTBCTTCCGGGTTCGGGCCCS
T ss_pred cCceeccch--hhHHHhcCCCCccccCCCCCChHHCCchhhccCC
Confidence 999998864 4689999999999999999999999999999985
No 6
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=100.00 E-value=7e-57 Score=431.91 Aligned_cols=259 Identities=24% Similarity=0.428 Sum_probs=243.6
Q ss_pred ccccccccCCHHHHHhhhhcccccccccCCCCCCCCCCccCCccccccHHHHHHHHHcCeEEEeCCCceEEEEEccCchH
Q psy6089 34 VQRFLDLHNNRQYLQQRIREVVGSTYRVGDPRPEMPPGTFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESL 113 (313)
Q Consensus 34 ~~Rf~~~~~~~~~~~~r~~e~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~E~~a~r~~~~l~Dls~~~~i~v~~~G~dA 113 (313)
+|| +|++..|.-+.+|+.++.| |.+|.||+++.+||+|+|++|+|+|+|+|++|+|+ |+||
T Consensus 5 ~~~-tpl~~~~~~~ga~~~~~~g----------------~~~p~~y~~~~~E~~a~r~~~gl~dls~~~~i~v~--G~Da 65 (401)
T 1v5v_A 5 VKR-VHIFDWHKEHARKIEEFAG----------------WEMPIWYSSIKEEHLAVRNAVGIFDVSHMGEIVFR--GKDA 65 (401)
T ss_dssp CBC-CTTHHHHHHHCSEEEEETT----------------EEEEEESSCHHHHHHHHHHSCEEEECTTSEEEEEE--STTH
T ss_pred ccc-CchHHHHHHcCCEEEEECC----------------EEechhcCCHHHHHHHHHhCEEEEECCCcEEEEEE--CCCH
Confidence 455 8998888888888777555 78889999999999999999999999999999999 9999
Q ss_pred HHHHhhhcccCcc-cCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchHHHHHHH----HhhC--CCCCceEE
Q psy6089 114 VDWLQQLCSNDVN-IPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWM----KNHL--PTKHYITL 186 (313)
Q Consensus 114 ~~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~L----~~~~--~~~~~V~i 186 (313)
.+|||+++||||+ +++|+++||++||++|+|++|++|+|+++++|+|+++++..+.+++|| ++++ . +.+|+|
T Consensus 66 ~~fLq~l~t~dv~~l~~g~~~yt~~ln~~G~i~~D~~v~r~~~d~~ll~~~a~~~~~~~~~L~~~~~~~~~~~-~~~V~i 144 (401)
T 1v5v_A 66 LKFLQYVTTNDISKPPAISGTYTLVLNERGAIKDETLVFNMGNNEYLMICDSDAFEKLYAWFTYLKRTIEQFT-KLDLEI 144 (401)
T ss_dssp HHHHHHHSSSCTTSSCSSEEEEEEEECTTSCEEEEEEEEEEETTEEEEEECTTTHHHHHHHHHHHHHHHHTTS-CCCCEE
T ss_pred HHHHHHhhccccCcCCCCCEEEEEEECCCCcEEEEEEEEEecCCEEEEEECcccHHHHHHHHHHHHHhhhccC-CCcEEE
Confidence 9999999999998 899999999999999999999999999988999999999999999999 8886 4 358999
Q ss_pred EEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEECCcccEEEEecCCCCCceEEEEec--------------
Q psy6089 187 SDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIP-------------- 251 (313)
Q Consensus 187 ~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G~el~~~-------------- 251 (313)
+|+|+++++++|+||+|+++|+++++.|+ .+|+++++.+.+++ .++++.|++|+||+||||++|
T Consensus 145 ~d~s~~~~~lal~GP~a~~vL~~l~~~dl~~~~~~~~~~~~~~g-~~~~i~R~g~tge~G~ei~~~~~~~~~~~~~~~~~ 223 (401)
T 1v5v_A 145 ELKTYDIAMFAVQGPKARDLAKDLFGIDINEMWWFQARWVELDG-IKMLLSRSGYTGENGFEVYIEDANPYHPDESKRGE 223 (401)
T ss_dssp EECTTTEEEEEEESTTHHHHHHHHHSCCGGGSCTTBEEEEEETT-EEEEEECCCSSSSCEEEEEEECCCTTCSSGGGCCC
T ss_pred EECcCCEEEEEEECccHHHHHHHhhCCCchhcCccceEEEEeCC-eEEEEEeCCCCCCCeEEEEEecccccccccccccc
Confidence 99999999999999999999999998888 89999999999988 569999999999999999999
Q ss_pred cccHHHHHHHHHhcCccCCceecCccchhhhhhcccCCcccCCCC---------CCCCcccccCCccccCC
Q psy6089 252 SEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLN---------SVTTPFESGSAYRVKLD 313 (313)
Q Consensus 252 ~~~a~~l~~~L~~ag~~~g~~~~G~~a~~~lRiE~G~~~~g~dl~---------~~~~P~Eagl~~~v~~~ 313 (313)
.+.+..+|++|+++|++||+.|+|+.||++||||+|+|.||+|++ ++++|+|+||+|.|+|+
T Consensus 224 ~~~a~~l~~~L~~ag~~~g~~p~g~~a~~~lRieaG~p~~g~d~~~~~~~~~~~~~~~P~E~gl~~~V~f~ 294 (401)
T 1v5v_A 224 PEKALHVWERILEEGKKYGIKPCGLGARDTLRLEAGYTLYGNETKELQLLSTDIDEVTPLQANLEFAIYWD 294 (401)
T ss_dssp CHHHHHHHHHHHHHHGGGTCEEECHHHHHHHHHHHTCCCBTTTBCCCCCSSCSCCSSCTTTTTCGGGCCTT
T ss_pred HHHHHHHHHHHHhhhhccCceecChhHhhHHHHhcCCCccccccChhhccccCcCCCChHHCCcccccCCC
Confidence 999999999999999999999999999999999999999999999 89999999999999985
No 7
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*
Probab=100.00 E-value=8.2e-57 Score=428.55 Aligned_cols=256 Identities=20% Similarity=0.371 Sum_probs=231.0
Q ss_pred CccccCccccccccCCHHHHHhhhhcccccccccCCCCCCCCCCccCCccccccHHHHHHHHHcCeEEEeCCCceEEEEE
Q psy6089 28 ELLSFDVQRFLDLHNNRQYLQQRIREVVGSTYRVGDPRPEMPPGTFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKIT 107 (313)
Q Consensus 28 d~~~~d~~Rf~~~~~~~~~~~~r~~e~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~E~~a~r~~~~l~Dls~~~~i~v~ 107 (313)
|-.+-.+|| +|++..+.-+.+|+.++.| |++|.||+++.+||+|+|++++|||+|+|++|+|+
T Consensus 8 ~~~~~~~~~-tpl~~~h~~~Ga~~~~~~g----------------~~~p~~y~~~~~E~~avr~~~gl~DlS~~g~i~v~ 70 (381)
T 1vlo_A 8 DPALRAAQQ-TPLYEQHTLCGARMVDFHG----------------WMMPLHYGSQIDEHHAVRTDAGMFDVSHMTIVDLR 70 (381)
T ss_dssp --------C-CTTHHHHHHTTCEEEEETT----------------EEEEEESSCHHHHHHHHHHSCEEEECTTSEEEEEE
T ss_pred CCCCCCccc-CchHHHHHHcCCEEEeECC----------------EEcccccCCHHHHHHHHHhCeEEEECCCcEEEEEE
Confidence 334445566 8888877777777766665 78889999999999999999999999999999999
Q ss_pred ccCchHHHHHhhhcccCcc-c-CCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchHHHHHHHHhhCCCCCceE
Q psy6089 108 CSDESLVDWLQQLCSNDVN-I-PVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYIT 185 (313)
Q Consensus 108 ~~G~dA~~fL~~l~t~di~-l-~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~ 185 (313)
|+||.+|||+++||||+ + ++|+++||+|||++|+|++|++|+|+++++|+|+++++..+++++||++++.. .+|+
T Consensus 71 --G~DA~~fLq~l~t~dv~~l~~~g~~~yt~~ln~~G~i~~D~~v~r~~~d~~~lv~~a~~~~~~~~~L~~~~~~-~~V~ 147 (381)
T 1vlo_A 71 --GSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEP-FGIE 147 (381)
T ss_dssp --STTHHHHHHHHBSSCGGGCCSTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHHHGG-GTCE
T ss_pred --CCCHHHHHHHhccccccccCCCCCEEEEEEECCCCcEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHHhccC-CceE
Confidence 99999999999999998 8 89999999999999999999999999988999999999999999999999763 5899
Q ss_pred EEEecCCeEEEEEeCccHHHHHhhcc----ccCC-CCCCcceEEEEECCcccEEEEecCCCCCceEEEEeccccHHHHHH
Q psy6089 186 LSDVTSKYTVINVVGPKAKQLLSELC----DEDI-NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQ 260 (313)
Q Consensus 186 i~d~t~~~~~l~l~GP~a~~vL~~l~----~~dl-~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G~el~~~~~~a~~l~~ 260 (313)
|+| ++++++|+||||+|+++|++++ +.++ ++||+++..+ + ++++.|++|+||+||||++|.+.+..+|+
T Consensus 148 i~d-s~~~~~lalqGP~a~~~l~~l~~~~~~~~l~~~~~~~~~~~---g--~~~i~R~gytGe~G~ei~~~~~~a~~l~~ 221 (381)
T 1vlo_A 148 ITV-RDDLSMIAVQGPNAQAKAATLFNDAQRQAVEGMKPFFGVQA---G--DLFIATTGYTGEAGYEIALPNEKAADFWR 221 (381)
T ss_dssp EEE-CTTEEEEEEESTTHHHHHHTTCCHHHHHHHTTCCSSBEEEE---T--TEEEECCCSSSSCEEEEEEEHHHHHHHHH
T ss_pred EEE-CCCEEEEEEECccHHHHHHHhhccccCCCcccCCcceeEEe---c--cEEEEecCCCCCCEEEEEEeHHHHHHHHH
Confidence 999 9999999999999999999998 5566 7998888765 4 59999999999999999999999999999
Q ss_pred HHHhcCccCCceecCccchhhhhhcccCCcccCCCCCCCCcccccCCccccCC
Q psy6089 261 KIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKLD 313 (313)
Q Consensus 261 ~L~~ag~~~g~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eagl~~~v~~~ 313 (313)
+|+++| +.|+|+.||++||||+|+|.||+|++++++|+|+||+|.|+|+
T Consensus 222 ~L~~~g----~~p~G~~a~d~LRiEaG~p~~g~d~~~~~~P~EagL~~~V~~~ 270 (381)
T 1vlo_A 222 ALVEAG----VKPCGLGARDTLRLEAGMNLYGQEMDETISPLAANMGWTIAWE 270 (381)
T ss_dssp HHHHTT----CEECCHHHHHHHHHHTTCCCBTTTBCTTSCGGGTTCGGGCCCC
T ss_pred HHHhcC----CcccCHHHHHHHHHHcCCCcccccCCCCCChhhCCccceeECC
Confidence 999984 8999999999999999999999999999999999999999985
No 8
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*
Probab=100.00 E-value=9.6e-57 Score=427.68 Aligned_cols=255 Identities=18% Similarity=0.259 Sum_probs=235.0
Q ss_pred ccccccccCCHHHHHhhhhcccccccccCCCCCCCCCCccCCccccc-cHHHHHHHHHcCeEEEeCCCceEEEEEccCch
Q psy6089 34 VQRFLDLHNNRQYLQQRIREVVGSTYRVGDPRPEMPPGTFFKPKFFD-FMEEEYRACFEGVGIIDMSSFSKIKITCSDES 112 (313)
Q Consensus 34 ~~Rf~~~~~~~~~~~~r~~e~~~~~~~~~~p~~~~~~~~~~~p~~~~-~~~~E~~a~r~~~~l~Dls~~~~i~v~~~G~d 112 (313)
+|| +|++..|.-+.+++.++.| |++|.||+ .+.+||+|+|++++|||+|||++|+|+ |+|
T Consensus 5 ~~~-tpl~~~~~~~Ga~~~~~~g----------------~~~p~~y~~~~~~E~~a~r~~~gl~Dls~~g~i~v~--G~d 65 (375)
T 1wsr_A 5 LRR-TPLYDFHLAHGGKMVAFAG----------------WSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQTKIL--GSD 65 (375)
T ss_dssp CBC-CTTHHHHHHTTCEEEEETT----------------EEEEEECSSCHHHHHHHHHHSEEEEECTTSEEEEEE--STT
T ss_pred ccc-CccHHHHHHCCCEEEEECC----------------EEechhhCCCHHHHHHHHHhCcEEEECCceEEEEEE--CCC
Confidence 355 8998888888888877665 67777776 789999999999999999999999999 999
Q ss_pred HHHHHhhhcccCcc-cCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchHHHHHHHHhhCCC----CCceEEE
Q psy6089 113 LVDWLQQLCSNDVN-IPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPT----KHYITLS 187 (313)
Q Consensus 113 A~~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~~----~~~V~i~ 187 (313)
|.+|||+++|||++ +++|+++||++||++|+|++|++|+|+++|+|+|+++++..+.+++||++++.. +.+|+|+
T Consensus 66 a~~fLq~l~t~dv~~l~~g~~~y~~~ln~~G~i~~D~~v~r~~~d~~~lv~~a~~~~~~~~~L~~~~~~~~~~~~~V~i~ 145 (375)
T 1wsr_A 66 RVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKDLALMQDKVRELQNQGRDVGLE 145 (375)
T ss_dssp HHHHHHHHBSSCCTTCCTTEEEEEEEECTTCCEEEEEEEEECTTSSEEEEECGGGHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHhcccccCcCCCCCEEEEEEECCCCeEEEEEEEEEEcCCEEEEEeCCccHHHHHHHHHHhhhhhcCCCCeEEEE
Confidence 99999999999998 889999999999999999999999999988999999999999999999998642 2589999
Q ss_pred EecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEECCccc-EEEEecCCCCCceEEEEeccccHHHHHHHHHhc
Q psy6089 188 DVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIGYASD-VKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTL 265 (313)
Q Consensus 188 d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~~~~~-v~~~R~~~~Ge~G~el~~~~~~a~~l~~~L~~a 265 (313)
|+ ++++|+|+||+|+++|+++++.|+ ++||++++.+++++ .+ ++++|++|+||+||||++|.+.+..+|++|+++
T Consensus 146 d~--~~~~lal~GP~a~~vL~~l~~~dl~~l~~~~~~~~~~~g-~~~~~i~R~g~tGe~G~el~~~~~~a~~l~~~L~~a 222 (375)
T 1wsr_A 146 VL--DNALLALQGPTAAQVLQAGVADDLRKLPFMTSAVMEVFG-VSGCRVTRCGYTGEDGVEISVPVAGAVHLATAILKN 222 (375)
T ss_dssp EC--CCEEEEEESTTHHHHHHTTCSSCGGGCCTTBEEEEEETT-EEEEEEESCCSSSSSEEEEEECHHHHHHHHHHHHTS
T ss_pred EC--CEEEEEEECcCHHHHHHhhcCcchhhCCccceEEEEECC-cceEEEEeCccCCCCeEEEEeeHHHHHHHHHHHHhc
Confidence 98 689999999999999999998888 89999999999987 45 899999999999999999999999999999998
Q ss_pred CccCCceecCccchhhhhhcccCCcccCCCCCCCCcccccCCccccCC
Q psy6089 266 GKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKLD 313 (313)
Q Consensus 266 g~~~g~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eagl~~~v~~~ 313 (313)
|+ +.|+|+.||++||||+|+|.||+|++++++|+|+||+|.|+|+
T Consensus 223 g~---~~p~G~~a~d~lRieaG~p~~g~d~~~~~~P~Eagl~~~V~~~ 267 (375)
T 1wsr_A 223 PE---VKLAGLAARDSLRLEAGLCLYGNDIDEHTTPVEGSLSWTLGKR 267 (375)
T ss_dssp TT---EEECCHHHHHHHHHHTTCCCBTTTBCTTCCTTTTTCGGGSCHH
T ss_pred CC---eEeCCHHHHHHHHHhCCcCCcCccCCCCCChhHCCchheecCC
Confidence 62 8999999999999999999999999999999999999999874
No 9
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=100.00 E-value=1.6e-54 Score=455.60 Aligned_cols=243 Identities=21% Similarity=0.398 Sum_probs=227.7
Q ss_pred CCCCccCCccccc--------cHHHHHHHHHcCeEEEeCCCceEEEEEccCchHHHHHhhhcccCcc-cCCCCEEEeeee
Q psy6089 68 MPPGTFFKPKFFD--------FMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVN-IPVGGISHTGMQ 138 (313)
Q Consensus 68 ~~~~~~~~p~~~~--------~~~~E~~a~r~~~~l~Dls~~~~i~v~~~G~dA~~fL~~l~t~di~-l~~G~~~~t~~l 138 (313)
.+.++|++|.||. .+.+||+|+|++++|||+|||++|+|+ |+||.+|||+++|||++ +++|+++||+||
T Consensus 591 ~~~~gw~~p~~y~~~g~~~~~~~~~E~~avr~~~gl~D~S~~g~i~v~--G~da~~fL~~l~t~dv~~l~~g~~~y~~~l 668 (965)
T 2gag_A 591 EDVGQWKRPWYYPQAGETMDQAVYRESKAVRDSVGMLDATTLGKIEIR--GKDAAEFLNRIYTNGYTKLKVGMGRYGVMC 668 (965)
T ss_dssp EEETTEEEEEECCCTTCCHHHHHHHHHHHHHHSCEEEECTTSEEEEEE--STTHHHHHHHHBSSCCTTCCTTBEEEEEEE
T ss_pred eeECCEeeehhhCCCCcccchhHHHHHHHHHhCeEEEeCCceEEEEEe--CcCHHHHHHHhhccCCCcCCCCCEEEEEEE
Confidence 3456677777776 579999999999999999999999999 99999999999999998 899999999999
Q ss_pred cCCCeeEEEEEEEEecCCeEEEEcCCcchHHHHHHHHhhCC---CCCceEEEEecCCeEEEEEeCccHHHHHhhcc-ccC
Q psy6089 139 NERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLP---TKHYITLSDVTSKYTVINVVGPKAKQLLSELC-DED 214 (313)
Q Consensus 139 n~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~---~~~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~-~~d 214 (313)
|++|+|++|++|+|+++++|+|+++++..+++++||++++. .+.+|+|+|+|+++++|+||||+|+++|++++ +.|
T Consensus 669 ~~~G~i~~D~~v~r~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~V~i~d~s~~~~~lal~GP~a~~~l~~~~~~~d 748 (965)
T 2gag_A 669 KADGMIFDDGVTLRLAEDRFLLHTTTGGAADVLDWLEEWLQTEWPDLDVTCTSVTEQLATVAVVGPRSRDVIAKLASTVD 748 (965)
T ss_dssp CTTSCEEEEEEEEEEETTEEEEEECTTTHHHHHHHHHHHHHHTCTTSCCEEEECTTTEEEEEEESTTHHHHHHHHCTTSC
T ss_pred CCCCcEEEEEEEEEEeCCEEEEEECcccHHHHHHHHHHHHHhcCCCCcEEEEEccCCEEEEEEECcCHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999863 23589999999999999999999999999998 446
Q ss_pred C---CCCCcceEEEEE-CCcccEEEEecCCCCCceEEEEeccccHHHHHHHHHhcCccCCceecCccchhhhhhcccCCc
Q psy6089 215 I---NLHPFSYKRTDI-GYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPF 290 (313)
Q Consensus 215 l---~~~~~~~~~~~i-~~~~~v~~~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~g~~~~G~~a~~~lRiE~G~~~ 290 (313)
+ ++||++++.+++ ++ .+++++|++|+||+||||++|.+++.++|++|+++|++||+.|+|+.||++||||+|+|.
T Consensus 749 l~~~~~~~~~~~~~~~~~g-~~~~~~R~~~tGe~G~ei~~~~~~~~~l~~~L~~ag~~~g~~p~G~~a~~~lRiE~G~~~ 827 (965)
T 2gag_A 749 VSNEGFKFMAFKDVVLDSG-IEARISRISFSGELAFEIAVPAWHGLRVWEDVYAAGEEFNITPYGTETMHVLRAEKGFII 827 (965)
T ss_dssp CSTTTSCTTBEEEEECTTS-CEEEEECCCSSSSCEEEEEEEGGGHHHHHHHHHHHHGGGTCEECCHHHHHHHHHHTTCCC
T ss_pred CccccCCCceeEEEEEcCC-CEEEEEeCCccCCCEEEEEEeHHHHHHHHHHHHhcchhcCceeCCHHHHHHHHHhCCccC
Confidence 5 689999999999 77 569999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcccccCCccccCC
Q psy6089 291 WAEDLNSVTTPFESGSAYRVKLD 313 (313)
Q Consensus 291 ~g~dl~~~~~P~Eagl~~~v~~~ 313 (313)
||+|++++++|+|+||+|+|+|+
T Consensus 828 ~g~d~~~~~~P~e~gl~~~V~~~ 850 (965)
T 2gag_A 828 VGQDTDGTVTPQDAGMEWVVSKL 850 (965)
T ss_dssp TTTTCCSSCCTTTTTCGGGSCSS
T ss_pred cccccCCCCCHHHCCchhhcCCC
Confidence 99999999999999999999985
No 10
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}
Probab=100.00 E-value=4.7e-52 Score=392.31 Aligned_cols=232 Identities=18% Similarity=0.167 Sum_probs=206.3
Q ss_pred CCccccc-cHHHH---HHHHHcCeE-EEeCCCceEEEEEccCchHHHHHhhhcccCcc-cCCCCEEEeeeecCCCeeEEE
Q psy6089 74 FKPKFFD-FMEEE---YRACFEGVG-IIDMSSFSKIKITCSDESLVDWLQQLCSNDVN-IPVGGISHTGMQNERGGYEND 147 (313)
Q Consensus 74 ~~p~~~~-~~~~E---~~a~r~~~~-l~Dls~~~~i~v~~~G~dA~~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d 147 (313)
++.++|. ++.+| |+|+|++|+ |||+|+|++|+|+ ||||.+|||+++||||+ +++|+++||++||++|+|++|
T Consensus 13 ~~~~~~~~~~~~eh~e~~avr~~~g~l~DlS~~g~i~v~--G~DA~~fLq~l~tndv~~l~~g~~~y~~~ln~~G~i~~D 90 (355)
T 3ttg_A 13 GRENLYFQGMLTEVSDTRIAHKKFGLFYPSVSRPSIFVE--GEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFD 90 (355)
T ss_dssp ---CCCCCCCCGGGTTHHHHHHSCEEECCSSCCCCEEEE--STTHHHHHHTTBSSCCSSCCTTBEEEEEEECTTCCEEEE
T ss_pred cccccccccchHHHHHHHHHHhcCeEEEeCCCcEEEEEE--CCCHHHHHhhhhhhccccCCCCCEEEEEEECCCceEEEE
Confidence 4555554 45454 599999999 9999999999999 99999999999999998 899999999999999999999
Q ss_pred EEEEEecCCeEEEEcCCcchHHHHHHHHhhCCCCCceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEE
Q psy6089 148 CILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTD 226 (313)
Q Consensus 148 ~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~ 226 (313)
++|+|++ |+|+|+++++..+++++||++++..+.+|+|+|+|+++++++||||+|+++|+++++.++ .++|+. ..
T Consensus 91 ~~v~r~~-d~~~lv~~a~~~~~~~~~L~~~~~~~~~V~i~d~s~~~~~lalqGP~a~~~l~~l~~~~l~~~~~~~---~~ 166 (355)
T 3ttg_A 91 AWCGNFE-DKIALFPPAGTREEFVNHLKKYLFFRTKAKITDMSDHFREIRLVGPETISVLLSLFDNNFSGSSFRM---LK 166 (355)
T ss_dssp EEEEEET-TEEEEECCTTCHHHHHHHHHHTCCTTCCCEEEECGGGEEEEEEESTTHHHHHHHHSSSCCCSSEEEE---CT
T ss_pred EEEEEEC-CEEEEEECcccHHHHHHHHHHhcccCCCeEEEECcCCEEEEEEECCcHHHHHHHhccCCCccCccee---ec
Confidence 9999997 799999999999999999999976236899999999999999999999999999987666 555533 23
Q ss_pred ECCcccEEE-EecC-CCCC--ceEEEEeccccHHHHHHHHHhcCccCCceecCccchhhhhhcccCCcccCCCCCCCCcc
Q psy6089 227 IGYASDVKL-MGFT-HTGE--PGYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPF 302 (313)
Q Consensus 227 i~~~~~v~~-~R~~-~~Ge--~G~el~~~~~~a~~l~~~L~~ag~~~g~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~ 302 (313)
++ ..+.+ .|++ |+|| +||||++|.+.+..+|++|+++|+++|+.|+|+.||++||||+|+|.||+|++++++|+
T Consensus 167 ~g--~~~~~~~r~GsytGE~e~G~el~~p~~~a~~l~~~L~~aG~~~g~~~~G~~a~d~lRiEaG~p~~g~d~~~~~~P~ 244 (355)
T 3ttg_A 167 NG--GYVLIHPTSFQHNLDVGLQADLFIPIDQFETTQKSLEDFTSNKGGVLLDESSYLAYLTEKGIPLFPSELNDSFFPA 244 (355)
T ss_dssp TS--CEEEECCSBCGGGCBCCCEEEEEEEGGGHHHHHHHHHHHHHHHTCEECCHHHHHHHHHHTTCCCTTTTSSTTCCTT
T ss_pred cC--cEEEEecCcccccCccCCeEEEEEeHHHHHHHHHHHHhhhhhcCCccCCHHHHHHHHHHCCCcccccccCCCCCHH
Confidence 32 23555 6775 9997 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC-ccccCC
Q psy6089 303 ESGSA-YRVKLD 313 (313)
Q Consensus 303 Eagl~-~~v~~~ 313 (313)
|+||. |.|+|+
T Consensus 245 Eagl~~~~V~f~ 256 (355)
T 3ttg_A 245 EAGLDSVGVSYN 256 (355)
T ss_dssp TTTCHHHHCCSS
T ss_pred HcCCCCCeEECC
Confidence 99999 999985
No 11
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Probab=100.00 E-value=1.8e-44 Score=338.49 Aligned_cols=205 Identities=13% Similarity=0.118 Sum_probs=185.0
Q ss_pred HcCeEEEeCCCceEEEEEccCchHHHHHhhhcccCcc-cCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchH
Q psy6089 90 FEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVN-IPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQT 168 (313)
Q Consensus 90 r~~~~l~Dls~~~~i~v~~~G~dA~~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~ 168 (313)
+-.|++||+|||++|+|+ ||||.+|||+++|||+. +++|+++||++||++|||++|++|+|+++ +|+|+++++..+
T Consensus 28 ~~~~~l~dlS~~~~i~v~--G~DA~~fLq~l~tndv~~l~~g~~~yt~~ln~~G~i~~D~~v~r~~~-~~~lv~~a~~~~ 104 (338)
T 1vly_A 28 RLPLTLMTLDDWALATIT--GADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDGD-GFAWIERRSVRE 104 (338)
T ss_dssp GCCSEEEECTTEEEEEEE--STTHHHHHHTTBSSCGGGCCTTCEEEEEEECTTSCEEEEEEEEEETT-EEEEEEEHHHHH
T ss_pred cCceEEEECCCcEEEEEE--CCCHHHHhcchhhhcccccCCCceEEEEEECCCCCEEEEEEEEEeCC-cEEEEecchhhH
Confidence 556999999999999999 99999999999999998 89999999999999999999999999986 899999999999
Q ss_pred HHHHHHHhhCCCCCceEEEEecCCeEEEEEeCccHHHHHhhcccc-CC-CCCCcceEEEEECCcccEEEEecCCCCCceE
Q psy6089 169 RVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDE-DI-NLHPFSYKRTDIGYASDVKLMGFTHTGEPGY 246 (313)
Q Consensus 169 ~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~-dl-~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G~ 246 (313)
++++||++++.. .+|+|++. +++++++|+||+|+++|+++++. +. .++| ..+++ +.++|.+ +||+||
T Consensus 105 ~~~~~L~~~~~~-~~V~i~~~-~~~~~lal~Gp~a~~~l~~~~~~~~~~~~~~-----~~~~g---~~~~~~~-tge~G~ 173 (338)
T 1vly_A 105 PQLTELKKYAVF-SKVTIAPD-DERVLLGVAGFQARAALANLFSELPSKEKQV-----VKEGA---TTLLWFE-HPAERF 173 (338)
T ss_dssp HHHHHHHTTCSS-SSCEEEEE-CSSEEEEEESTTHHHHHHTTSSCCCBTTBCE-----EEETT---EEEEEEC-SSSCEE
T ss_pred HHHHHHHHhhhh-cceEEEEc-CceEEEEEECCcHHHHHHhhcccCCCcccce-----eecCC---eEEEEec-CCCCcE
Confidence 999999999863 68999987 88999999999999999998752 33 4453 35555 3345555 899999
Q ss_pred EEEeccccHHHHHHHHHhcCccCCceecCccchhhhhhcccCCcccCCCCCCCCcccccCC--ccccCC
Q psy6089 247 CLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSA--YRVKLD 313 (313)
Q Consensus 247 el~~~~~~a~~l~~~L~~ag~~~g~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eagl~--~~v~~~ 313 (313)
||++|.+.+..+|++|+++ +.++|+.||++||||+|+|.||+|++++++|+|+||+ |.|+|+
T Consensus 174 el~~~~~~~~~l~~~L~~~-----~~~~g~~a~~~lRieaG~p~~g~d~~~~~~P~Eagl~~l~~V~f~ 237 (338)
T 1vly_A 174 LIVTDEATANMLTDKLRGE-----AELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGISFK 237 (338)
T ss_dssp EEEECHHHHHHHHHHHBTT-----BEEECHHHHHHHHHHHTCCCCCGGGTTSCCGGGGTGGGTTCCCSS
T ss_pred EEEechHHHHHHHHHhhhc-----CccCCHHHHHHHHHHcCCccccccccCCcChhhcCccccCCCcCC
Confidence 9999999999999999874 7899999999999999999999999999999999999 999985
No 12
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=100.00 E-value=7.4e-34 Score=249.11 Aligned_cols=168 Identities=14% Similarity=0.169 Sum_probs=143.1
Q ss_pred HHcCeEEEeCCCceEEEEEccCchH---HHHHhhhcccCcccCCCCEEEeeeecCCCee---EEEEEEEEecCCeEEEEc
Q psy6089 89 CFEGVGIIDMSSFSKIKITCSDESL---VDWLQQLCSNDVNIPVGGISHTGMQNERGGY---ENDCILVRETETSYFMVS 162 (313)
Q Consensus 89 ~r~~~~l~Dls~~~~i~v~~~G~dA---~~fL~~l~t~di~l~~G~~~~t~~ln~~G~i---~~d~~v~r~~~d~~~l~~ 162 (313)
.|++|+|||+|+|+++.|+ |+|+ .++|+.+++++++ ++.|++ ++|++|+|+++|+|+|++
T Consensus 28 ~r~~vglfDvShmg~~~v~--G~~a~~~l~~l~~~~g~~l~------------~~~g~v~~~~dDl~v~rl~~d~~llv~ 93 (210)
T 2gag_C 28 VAGRVELREIAFTTQISLR--CAPGTQAHAALAAATGAGLP------------AKVGEVAGEAQGTAVLWLAPDEFLATS 93 (210)
T ss_dssp BTTTBEEEECCSCEEEEEE--CCTTSHHHHHHHHHHSSCCC------------CSTTBCEECTTSCEEEEEETTEEEEEE
T ss_pred ccCcEEEEECCCCcEEEEE--eCChhHHHHHHHHHhCcCCC------------CCCCEEEEccCCEEEEEEcCCEEEEEe
Confidence 8999999999999999999 9994 5556666655553 344444 689999999999999999
Q ss_pred CCcchHHHHHHHHhhCCCCCceEEEEecCCeEEEEEeCccHHHHHhhccccCC---CCCCcceEEEEECCcccEEEEecC
Q psy6089 163 PTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI---NLHPFSYKRTDIGYASDVKLMGFT 239 (313)
Q Consensus 163 ~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl---~~~~~~~~~~~i~~~~~v~~~R~~ 239 (313)
++ .+++.+||++++.. .+|.++|+|+++++|+||||+|+++|+++++.|+ +|||++++++.+++ .+|++.|
T Consensus 94 na--~~~d~~~l~~~l~~-~~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v~g-~~v~v~R-- 167 (210)
T 2gag_C 94 AE--NTELGGVLSAALGD-APGQVVDLSANRSVLELTGPDAPLVLRKSCPADLHPRAFAVNQAIVTSVAN-IPVLLWR-- 167 (210)
T ss_dssp SS--CTTHHHHHHHHHTT-SSSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETT-EEEEEEE--
T ss_pred Cc--HHHHHHHHHHhcCc-CCEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEECC-EEEEEEE--
Confidence 88 46799999998763 3699999999999999999999999999998888 39999999999998 5799999
Q ss_pred CCCCceEEEEeccccHHHHHHHHHhcCccCCceecCcc
Q psy6089 240 HTGEPGYCLYIPSEYALHVYQKIMTLGKDYNARDVGMF 277 (313)
Q Consensus 240 ~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~g~~~~G~~ 277 (313)
+||+||||+||++++.++|++|+++++++|++|++++
T Consensus 168 -tGEdGfEI~v~~~~A~~lw~~Ll~a~~~~G~~~~~~~ 204 (210)
T 2gag_C 168 -TGEQAWRIMPRASFTEHTVHWLVDAMSEFASEAVILE 204 (210)
T ss_dssp -EETTEEEEEEBGGGHHHHHHHHHHHHHGGGC------
T ss_pred -eCCCEEEEEEEHHHHHHHHHHHHHHHHHcCCeEEEee
Confidence 7999999999999999999999999999999999875
No 13
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C*
Probab=100.00 E-value=1.3e-33 Score=246.89 Aligned_cols=166 Identities=11% Similarity=0.161 Sum_probs=144.9
Q ss_pred HHcCeEEEeCCCceEEEEEccCchHHHHHhh---hcccCcccCCCCEEEeeeecCCCee---EEEEEEEEecCCeEEEEc
Q psy6089 89 CFEGVGIIDMSSFSKIKITCSDESLVDWLQQ---LCSNDVNIPVGGISHTGMQNERGGY---ENDCILVRETETSYFMVS 162 (313)
Q Consensus 89 ~r~~~~l~Dls~~~~i~v~~~G~dA~~fL~~---l~t~di~l~~G~~~~t~~ln~~G~i---~~d~~v~r~~~d~~~l~~ 162 (313)
.+++|+|||+|+|+++.|+ |+||.+||+. +++++ +.++.|++ ++|++|+|+++|+|+|++
T Consensus 26 ~~~~vglfDvShmg~~~v~--G~~a~~~l~~l~~~~~~~------------l~~~~g~~~~~~dDl~v~rl~~d~~llv~ 91 (206)
T 1x31_C 26 GERAVTLREVAFTTQLGLR--AVPGSTGHAALAAATGVG------------LPAAVGEVAGDVSGTAVLWLGPDEFLLAA 91 (206)
T ss_dssp STTCBEEEECCSCEEEEEE--CCTTSHHHHHHHHHSSSC------------CCCSTTBEEECTTSCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCcEEEEE--eCChhHHHHHHHHHhCcC------------CCCCCCEEEEecCCEEEEEEcCCEEEEEc
Confidence 5689999999999999999 9999966644 33333 33455666 899999999999999999
Q ss_pred CCcchHHHHHHHHhhCCCCCceEEEEecCCeEEEEEeCccHHHHHhhccccCC---CCCCcceEEEEECCcccEEEEecC
Q psy6089 163 PTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI---NLHPFSYKRTDIGYASDVKLMGFT 239 (313)
Q Consensus 163 ~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl---~~~~~~~~~~~i~~~~~v~~~R~~ 239 (313)
++ .+++.+||++++.. .+|.++|+|+++++|+||||+|+++|+++++.|+ +|||++++++++++ .+|+++|++
T Consensus 92 na--~~~d~~~l~~~l~~-~~v~v~d~s~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v~g-~~v~i~Rtg 167 (206)
T 1x31_C 92 EE--NPALLDTLQGALGQ-EPGQVLDLSANRSVLQLEGPAAALVLRKSCPADLHPREFGVNRAITTSLAN-IPVLLWRTG 167 (206)
T ss_dssp SS--CTHHHHHHHHHHTT-SSSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCCTTTSCTTEEEEEEETT-EEEEEEEEE
T ss_pred Cc--hHHHHHHHHHhcCc-CcEEEEECCCCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEEcC-eEEEEEEcC
Confidence 88 56899999998763 3689999999999999999999999999998888 39999999999998 579999977
Q ss_pred CCCCceEEEEeccccHHHHHHHHHhcCccCCceecC
Q psy6089 240 HTGEPGYCLYIPSEYALHVYQKIMTLGKDYNARDVG 275 (313)
Q Consensus 240 ~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~g~~~~G 275 (313)
|+||||+||++++.+||++|+++|++||+.+..
T Consensus 168 ---EdGfEI~v~~~~A~~lw~~L~~ag~e~g~~~~~ 200 (206)
T 1x31_C 168 ---EQSWRILPRASFTEHTVHWLIDAMSEFSAAEVA 200 (206)
T ss_dssp ---TTEEEEECBGGGHHHHHHHHHHHHGGGGSCCCC
T ss_pred ---CCeEEEEEEHHHHHHHHHHHHHHHHHhCCCccc
Confidence 999999999999999999999999999987754
No 14
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=97.53 E-value=0.00056 Score=59.12 Aligned_cols=78 Identities=18% Similarity=0.295 Sum_probs=67.3
Q ss_pred CeEEEeCCC-ceEEEEEccCchHHHHHhhhcccCcc---cCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcch
Q psy6089 92 GVGIIDMSS-FSKIKITCSDESLVDWLQQLCSNDVN---IPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQ 167 (313)
Q Consensus 92 ~~~l~Dls~-~~~i~v~~~G~dA~~fL~~l~t~di~---l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~ 167 (313)
.+.+.|+|. +..|.|+ ||.|.+.|+.++..|+. ++.+++..+-+ ++ ..+.|.|.||+.|-|.++.+.+
T Consensus 111 ~v~v~d~s~~~a~lalq--GP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v----~g--~~v~v~RtGEdGfEI~v~~~~A 182 (210)
T 2gag_C 111 PGQVVDLSANRSVLELT--GPDAPLVLRKSCPADLHPRAFAVNQAIVTSV----AN--IPVLLWRTGEQAWRIMPRASFT 182 (210)
T ss_dssp SSEEEECTTTBCCEEEE--STTHHHHHTTTCCSCCSTTTSCTTBEEEEEE----TT--EEEEEEEEETTEEEEEEBGGGH
T ss_pred CEEEEECCCCEEEEEEE--CHhHHHHHHhhCcccCCcccCCCCcEEEEEE----CC--EEEEEEEeCCCEEEEEEEHHHH
Confidence 588999996 8999999 99999999999888885 67788877644 22 2588999999999999999999
Q ss_pred HHHHHHHHhh
Q psy6089 168 TRVFEWMKNH 177 (313)
Q Consensus 168 ~~~~~~L~~~ 177 (313)
..++++|.+.
T Consensus 183 ~~lw~~Ll~a 192 (210)
T 2gag_C 183 EHTVHWLVDA 192 (210)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999765
No 15
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C*
Probab=97.45 E-value=0.00076 Score=58.06 Aligned_cols=78 Identities=18% Similarity=0.302 Sum_probs=66.8
Q ss_pred CeEEEeCCC-ceEEEEEccCchHHHHHhhhcccCcc---cCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcch
Q psy6089 92 GVGIIDMSS-FSKIKITCSDESLVDWLQQLCSNDVN---IPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQ 167 (313)
Q Consensus 92 ~~~l~Dls~-~~~i~v~~~G~dA~~fL~~l~t~di~---l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~ 167 (313)
.+.+.|+|. ++.|.|+ ||.|.+.|+.++..|+. ++.+++..+.+ ++ ..+.|.|.+|+.|-|.++.+.+
T Consensus 109 ~v~v~d~s~~~a~lalq--GP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v----~g--~~v~i~RtgEdGfEI~v~~~~A 180 (206)
T 1x31_C 109 PGQVLDLSANRSVLQLE--GPAAALVLRKSCPADLHPREFGVNRAITTSL----AN--IPVLLWRTGEQSWRILPRASFT 180 (206)
T ss_dssp SSEEEECTTTBCCEEEE--STTHHHHHTTTCCSCCCTTTSCTTEEEEEEE----TT--EEEEEEEEETTEEEEECBGGGH
T ss_pred cEEEEECCCCEEEEEEE--CHhHHHHHHhhCcccCCcccCCCCcEEEEEE----cC--eEEEEEEcCCCeEEEEEEHHHH
Confidence 488999996 8999999 99999999999888885 67788877644 22 2588999999999999999999
Q ss_pred HHHHHHHHhh
Q psy6089 168 TRVFEWMKNH 177 (313)
Q Consensus 168 ~~~~~~L~~~ 177 (313)
..++++|.+.
T Consensus 181 ~~lw~~L~~a 190 (206)
T 1x31_C 181 EHTVHWLIDA 190 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999765
No 16
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=97.25 E-value=1.7e-05 Score=77.33 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=52.9
Q ss_pred CCcccccccchhHHHHHHhHHcCCCCCCccccCccc--cccc-cCCHHHHHhhhhcccccccccCCCCC
Q psy6089 1 MNGNSLQGAGGIGRAVAEWMTHGEATQELLSFDVQR--FLDL-HNNRQYLQQRIREVVGSTYRVGDPRP 66 (313)
Q Consensus 1 ~ns~g~~~~gG~g~~la~wi~~g~~~~d~~~~d~~R--f~~~-~~~~~~~~~r~~e~~~~~~~~~~p~~ 66 (313)
+|+ ||..++++|+.||+| ++|+++.|++ |.|| |..+ +.+++| .+|..|.|++.|.++||++
T Consensus 414 ~n~-g~~~a~~l~~~l~~~-~~g~~~~~~l--~~r~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~p~~ 477 (497)
T 2bry_A 414 VAR-GFLAAFDAAWMVKRW-AEGAGPLEVL--AERESLYQLLSQTSPEN-MHRNVAQYGLDPATRYPNL 477 (497)
T ss_dssp HHH-HHHHHHHHHHHHHHH-HTTCCHHHHH--HHHHHHHTTGGGCCTTT-SCSCGGGCCSSGGGTSSSC
T ss_pred hhh-HHHHHHHHHHHHHHH-hCCCCccchh--hhHHHHhhhhhhcCHHH-HhhhHHhhcCCCcCcCCCc
Confidence 365 999999999999999 7999999998 9999 5421 347788 9999999999999999986
No 17
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}
Probab=93.07 E-value=0.78 Score=43.00 Aligned_cols=86 Identities=20% Similarity=0.175 Sum_probs=65.0
Q ss_pred CceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEEC---Cc--ccEEEEecCCCCCceEEEEeccccH
Q psy6089 182 HYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIG---YA--SDVKLMGFTHTGEPGYCLYIPSEYA 255 (313)
Q Consensus 182 ~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~---~~--~~v~~~R~~~~Ge~G~el~~~~~~a 255 (313)
..|-+-|+| .+..|.|.||.|.+.|+.++..|+ .++..+.+-+.+- |. .++.+.|. +++.|-|.++...+
T Consensus 74 ~~~gl~DvS-h~g~i~V~G~DA~~fL~~l~tndv~~l~~G~~~yt~~ln~~G~i~dD~~V~rl---~~d~~~lv~~a~~~ 149 (393)
T 3gir_A 74 AHAGLFDIS-HMKLIAVEGPKAVEFLSYALPVDAALLKIGQSRYSYLLNERAGILDDLILTRL---AECRFMLVANAGNA 149 (393)
T ss_dssp HSEEEEECT-TSEEEEEESTTHHHHHHHHSSSCTTTSCTTBEEEEEEECTTCCEEEEEEEEEE---ETTEEEEEECGGGH
T ss_pred hCeEEEeCC-CcEEEEEECCCHHHHhhhhcccccccCCCCcEEEEEEECCCCcEEEEEEEEEe---cCCEEEEEECchhH
Confidence 368899998 479999999999999999998888 7777776544332 11 13466675 46789999999999
Q ss_pred HHHHHHHHhcCccCCc
Q psy6089 256 LHVYQKIMTLGKDYNA 271 (313)
Q Consensus 256 ~~l~~~L~~ag~~~g~ 271 (313)
..+++.|......+.+
T Consensus 150 ~~~~~~L~~~~~~~~V 165 (393)
T 3gir_A 150 QADFAELEKRAFGFEC 165 (393)
T ss_dssp HHHHHHHHHHTTTSSC
T ss_pred HHHHHHHHhhccCCce
Confidence 9999988776443333
No 18
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Probab=92.61 E-value=0.56 Score=43.35 Aligned_cols=79 Identities=15% Similarity=0.237 Sum_probs=61.2
Q ss_pred cCeEEEeCCC-ceEEEEEccCchHHHHHhhhcccCcc-cCCCCEEEeeeecCCCeeEEEEEEEEe---cCCeEEEEcCCc
Q psy6089 91 EGVGIIDMSS-FSKIKITCSDESLVDWLQQLCSNDVN-IPVGGISHTGMQNERGGYENDCILVRE---TETSYFMVSPTS 165 (313)
Q Consensus 91 ~~~~l~Dls~-~~~i~v~~~G~dA~~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d~~v~r~---~~d~~~l~~~~~ 165 (313)
.+|.+.|+|. +..+.|. ||.|.+.|+.++..|+. ++.++...+.+ .| ..+.|.|. +++.|.|+++.+
T Consensus 130 ~~V~i~d~s~~~~~l~l~--Gp~a~~~L~~l~~~dl~~l~~~~~~~~~~---~g---~~~~i~R~g~tge~G~ei~~~~~ 201 (364)
T 1wos_A 130 FDVEVSNISDTTALIAFQ--GPKAQETLQELVEDGLEEIAYYSFRKSIV---AG---VETLVSRTGYTGEDGFELMLEAK 201 (364)
T ss_dssp SSCEEEECGGGEEEEEEE--STTHHHHHGGGBSSCSTTSCTTBEEEEEE---TT---EEEEEESCCSSSSSEEEEEEEGG
T ss_pred CCEEEEECcCCEEEEEEE--CcCHHHHHHHhhCCCccccCccceEEEEE---CC---eEEEEEecCCCCCCeEEEEEeHH
Confidence 4799999974 8999999 99999999999887876 66676654433 22 24677886 578999999988
Q ss_pred chHHHHHHHHhh
Q psy6089 166 QQTRVFEWMKNH 177 (313)
Q Consensus 166 ~~~~~~~~L~~~ 177 (313)
....+++.|...
T Consensus 202 ~a~~l~~~L~~a 213 (364)
T 1wos_A 202 NAPKVWDALMNL 213 (364)
T ss_dssp GHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 888888877543
No 19
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=91.98 E-value=0.74 Score=43.20 Aligned_cols=76 Identities=20% Similarity=0.192 Sum_probs=58.3
Q ss_pred ceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEEC---Cc--ccEEEEecCCCCCceEEEEeccccHH
Q psy6089 183 YITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIG---YA--SDVKLMGFTHTGEPGYCLYIPSEYAL 256 (313)
Q Consensus 183 ~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~---~~--~~v~~~R~~~~Ge~G~el~~~~~~a~ 256 (313)
++.+.|+|. +..+.|.||.|.+.|+.++..|+ .++..+.+-+.+- |. .++.+.|. +++.|-|.++.+.+.
T Consensus 46 ~~gl~dls~-~~~i~v~G~Da~~fLq~l~t~dv~~l~~g~~~yt~~ln~~G~i~~D~~v~r~---~~d~~ll~~~a~~~~ 121 (401)
T 1v5v_A 46 AVGIFDVSH-MGEIVFRGKDALKFLQYVTTNDISKPPAISGTYTLVLNERGAIKDETLVFNM---GNNEYLMICDSDAFE 121 (401)
T ss_dssp SCEEEECTT-SEEEEEESTTHHHHHHHHSSSCTTSSCSSEEEEEEEECTTSCEEEEEEEEEE---ETTEEEEEECTTTHH
T ss_pred CEEEEECCC-cEEEEEECCCHHHHHHHhhccccCcCCCCCEEEEEEECCCCcEEEEEEEEEe---cCCEEEEEECcccHH
Confidence 578899986 79999999999999999998888 6666655433321 11 13456675 457899999999988
Q ss_pred HHHHHH
Q psy6089 257 HVYQKI 262 (313)
Q Consensus 257 ~l~~~L 262 (313)
.+.+.|
T Consensus 122 ~~~~~L 127 (401)
T 1v5v_A 122 KLYAWF 127 (401)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888888
No 20
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*
Probab=91.23 E-value=0.82 Score=42.40 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=58.9
Q ss_pred CceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEEC---Cc--ccEEEEecCCCCCceEEEEeccccH
Q psy6089 182 HYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIG---YA--SDVKLMGFTHTGEPGYCLYIPSEYA 255 (313)
Q Consensus 182 ~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~---~~--~~v~~~R~~~~Ge~G~el~~~~~~a 255 (313)
.++.+-|+|. +..|.|.||.|.+.|+.++..|+ .++..+.+-+.+- |. .++.+.|. +++.|-|.++...+
T Consensus 46 ~~~gl~Dls~-~g~i~v~G~da~~fLq~l~t~dv~~l~~g~~~y~~~ln~~G~i~~D~~v~r~---~~d~~~lv~~a~~~ 121 (375)
T 1wsr_A 46 QHCSLFDVSH-MLQTKILGSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNT---SEGHLYVVSNAGCW 121 (375)
T ss_dssp HSEEEEECTT-SEEEEEESTTHHHHHHHHBSSCCTTCCTTEEEEEEEECTTCCEEEEEEEEEC---TTSSEEEEECGGGH
T ss_pred hCcEEEECCc-eEEEEEECCCHHHHHHHhcccccCcCCCCCEEEEEEECCCCeEEEEEEEEEE---cCCEEEEEeCCccH
Confidence 3588999985 69999999999999999999898 6766655433321 11 13456664 56789999999888
Q ss_pred HHHHHHHHhc
Q psy6089 256 LHVYQKIMTL 265 (313)
Q Consensus 256 ~~l~~~L~~a 265 (313)
..+++.|...
T Consensus 122 ~~~~~~L~~~ 131 (375)
T 1wsr_A 122 EKDLALMQDK 131 (375)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8877776543
No 21
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=90.72 E-value=0.72 Score=42.60 Aligned_cols=80 Identities=21% Similarity=0.203 Sum_probs=61.4
Q ss_pred ceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEEC---Cc--ccEEEEecCCCCCceEEEEeccccHH
Q psy6089 183 YITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIG---YA--SDVKLMGFTHTGEPGYCLYIPSEYAL 256 (313)
Q Consensus 183 ~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~---~~--~~v~~~R~~~~Ge~G~el~~~~~~a~ 256 (313)
++-+-|+|. +..|.|.||.|.+.|+.++..|+ .++..+.+-..+- |. .++.+.|. +++.|-|.++.+.+.
T Consensus 46 ~~gl~dls~-~~~i~v~G~da~~fLq~l~t~dv~~l~~g~~~y~~~ln~~G~i~~d~~v~r~---~~d~~ll~~~a~~~~ 121 (365)
T 1yx2_A 46 AAGLFDVSH-MGEVEVSGNDSLSFLQRLMTNDVSALTPGRAQYTAMCYPDGGTVDDLLIYQK---GENRYLLVINASNID 121 (365)
T ss_dssp SEEEEECTT-SEEEEEESTTHHHHHHHHBSSCGGGCCTTBEEEEEEECTTSCEEEEEEEEEE---ETTEEEEEECGGGHH
T ss_pred CcEEEECCC-eEEEEEECCCHHHHHHHhcccccccCCCCCEEEEEEECCCCeEEEEEEEEEE---eCCEEEEEECcccHH
Confidence 588899985 79999999999999999998888 7776665543331 11 13456675 467899999999999
Q ss_pred HHHHHHHhcC
Q psy6089 257 HVYQKIMTLG 266 (313)
Q Consensus 257 ~l~~~L~~ag 266 (313)
.+++.|....
T Consensus 122 ~~~~~L~~~~ 131 (365)
T 1yx2_A 122 KDLAWMKEHA 131 (365)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhc
Confidence 9999887753
No 22
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*
Probab=90.60 E-value=1.3 Score=41.18 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=59.9
Q ss_pred ceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CC-CCcceEEEEEC---Cc--ccEEEEecCCCCCceEEEEeccccH
Q psy6089 183 YITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NL-HPFSYKRTDIG---YA--SDVKLMGFTHTGEPGYCLYIPSEYA 255 (313)
Q Consensus 183 ~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~-~~~~~~~~~i~---~~--~~v~~~R~~~~Ge~G~el~~~~~~a 255 (313)
++-+-|+|. +..|.|.||.|.+.|+.++..|+ .+ +..+.+-..+- |. .++.+.|. +++.|-|.++...+
T Consensus 55 ~~gl~DlS~-~g~i~v~G~DA~~fLq~l~t~dv~~l~~~g~~~yt~~ln~~G~i~~D~~v~r~---~~d~~~lv~~a~~~ 130 (381)
T 1vlo_A 55 DAGMFDVSH-MTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYF---TEDFFRLVVNSATR 130 (381)
T ss_dssp SCEEEECTT-SEEEEEESTTHHHHHHHHBSSCGGGCCSTTBEEEEEEECTTSCEEEEEEEEEE---ETTEEEEEECGGGH
T ss_pred CeEEEECCC-cEEEEEECCCHHHHHHHhccccccccCCCCCEEEEEEECCCCcEEEEEEEEEE---eCCEEEEEECcccH
Confidence 578899985 79999999999999999998888 76 66665533331 11 13456675 46789999999998
Q ss_pred HHHHHHHHhc
Q psy6089 256 LHVYQKIMTL 265 (313)
Q Consensus 256 ~~l~~~L~~a 265 (313)
..+++.|...
T Consensus 131 ~~~~~~L~~~ 140 (381)
T 1vlo_A 131 EKDLSWITQH 140 (381)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887654
No 23
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Probab=89.74 E-value=1.6 Score=39.77 Aligned_cols=79 Identities=9% Similarity=0.141 Sum_probs=59.8
Q ss_pred ceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEEC---Cc--ccEEEEecCCCCCceEEEEeccccHH
Q psy6089 183 YITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIG---YA--SDVKLMGFTHTGEPGYCLYIPSEYAL 256 (313)
Q Consensus 183 ~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~---~~--~~v~~~R~~~~Ge~G~el~~~~~~a~ 256 (313)
.|.+-|+|. +..+.|.||.|.+.|+.++..|+ .++..+.+-..+- |. .++.+.|.+ + .|-+.++.+.+.
T Consensus 30 ~~~l~dlS~-~~~i~v~G~DA~~fLq~l~tndv~~l~~g~~~yt~~ln~~G~i~~D~~v~r~~---~-~~~lv~~a~~~~ 104 (338)
T 1vly_A 30 PLTLMTLDD-WALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDG---D-GFAWIERRSVRE 104 (338)
T ss_dssp CSEEEECTT-EEEEEEESTTHHHHHHTTBSSCGGGCCTTCEEEEEEECTTSCEEEEEEEEEET---T-EEEEEEEHHHHH
T ss_pred ceEEEECCC-cEEEEEECCCHHHHhcchhhhcccccCCCceEEEEEECCCCCEEEEEEEEEeC---C-cEEEEecchhhH
Confidence 378899975 89999999999999999999998 7776665543321 21 135566753 4 899999998889
Q ss_pred HHHHHHHhcC
Q psy6089 257 HVYQKIMTLG 266 (313)
Q Consensus 257 ~l~~~L~~ag 266 (313)
.+++.|....
T Consensus 105 ~~~~~L~~~~ 114 (338)
T 1vly_A 105 PQLTELKKYA 114 (338)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhh
Confidence 9999887653
No 24
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*
Probab=89.65 E-value=2.2 Score=39.43 Aligned_cols=79 Identities=9% Similarity=0.220 Sum_probs=60.8
Q ss_pred HcCeEEEeCCCceEEEEEccCchHHHHHhhhcccCcc-cCCCCEEEeeeecCCCeeEEEEEEEEe---cCCeEEEEcCC-
Q psy6089 90 FEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVN-IPVGGISHTGMQNERGGYENDCILVRE---TETSYFMVSPT- 164 (313)
Q Consensus 90 r~~~~l~Dls~~~~i~v~~~G~dA~~fL~~l~t~di~-l~~G~~~~t~~ln~~G~i~~d~~v~r~---~~d~~~l~~~~- 164 (313)
+..|.+.+ ...+.|.|. ||.|.+.|+.++..+++ ++..+...+-+ .| .++.|.|. |++.|-|.+++
T Consensus 140 ~~~V~i~~-~~~a~lalq--GP~A~~~L~~l~~~~l~~l~~~~~~~~~i---~g---~~~~i~R~gytGE~G~Ei~~~~~ 210 (369)
T 3tfi_A 140 KFDVKIVE-PVVDIMAIQ--GPKSFALMEKVFGKKITELKFFGFDYFDF---EG---TKHLIARSGWSKQGGYEVYVENT 210 (369)
T ss_dssp TCCCEEEC-CSCEEEEEE--STTHHHHHHHHHCGGGGGCCTTBEEEEEE---TT---EEEEEESCCSSSSCEEEEEECSH
T ss_pred CCeEEEEE-CCEEEEEEE--CccHHHHHHhhcCCchhhCCCceEEEEEE---CC---eEEEEEeCccCCCCeEEEEEecH
Confidence 44788877 678999999 99999999999887876 66665554332 23 25678885 68899999998
Q ss_pred cchHHHHHHHHhh
Q psy6089 165 SQQTRVFEWMKNH 177 (313)
Q Consensus 165 ~~~~~~~~~L~~~ 177 (313)
+....+++.|...
T Consensus 211 ~~a~~lw~~L~~a 223 (369)
T 3tfi_A 211 QSGQKLYDHLFEV 223 (369)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 8888888888654
No 25
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=88.67 E-value=0.11 Score=52.13 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=36.9
Q ss_pred CCcccccccchhHHHHHHhHHcCCCCCC---ccccCccccccccCCHHHHHhhhh
Q psy6089 1 MNGNSLQGAGGIGRAVAEWMTHGEATQE---LLSFDVQRFLDLHNNRQYLQQRIR 52 (313)
Q Consensus 1 ~ns~g~~~~gG~g~~la~wi~~g~~~~d---~~~~d~~Rf~~~~~~~~~~~~r~~ 52 (313)
++|-|++++.++|+.||++|..+.+++| +..+++.||. .++.++.|..
T Consensus 627 ~g~~Gl~~ap~~ae~lA~~i~g~~~p~~~~~l~~~~p~Rf~----~r~l~~~~~~ 677 (689)
T 3pvc_A 627 LGSRGLCSAPLVAEILAAQMFGEPLPLDAKTLAALNPNRFW----IRKLLKGRPV 677 (689)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHTTCTTHHH----HHHHTTC---
T ss_pred ccccHHHHHHHHHHHHHHHHcCCCCCCCHHHHhhcChhHHH----HHHHhcCCcc
Confidence 3577999999999999999987777889 8999999987 3344444443
No 26
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}
Probab=88.32 E-value=2.3 Score=39.10 Aligned_cols=79 Identities=15% Similarity=0.079 Sum_probs=61.0
Q ss_pred ceE-EEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEEC---Cc--ccEEEEecCCCCCceEEEEeccccH
Q psy6089 183 YIT-LSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIG---YA--SDVKLMGFTHTGEPGYCLYIPSEYA 255 (313)
Q Consensus 183 ~V~-i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~---~~--~~v~~~R~~~~Ge~G~el~~~~~~a 255 (313)
+|- +-|+| .+..|.|.||.|.+.|+.++..|+ .++..+.+-..+- |. .++.+.|.+ +.|-|.++.+.+
T Consensus 35 ~~g~l~DlS-~~g~i~v~G~DA~~fLq~l~tndv~~l~~g~~~y~~~ln~~G~i~~D~~v~r~~----d~~~lv~~a~~~ 109 (355)
T 3ttg_A 35 KFGLFYPSV-SRPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFDAWCGNFE----DKIALFPPAGTR 109 (355)
T ss_dssp SCEEECCSS-CCCCEEEESTTHHHHHHTTBSSCCSSCCTTBEEEEEEECTTCCEEEEEEEEEET----TEEEEECCTTCH
T ss_pred cCeEEEeCC-CcEEEEEECCCHHHHHhhhhhhccccCCCCCEEEEEEECCCceEEEEEEEEEEC----CEEEEEECcccH
Confidence 567 88988 579999999999999999998888 7777666544331 11 245677763 589999999999
Q ss_pred HHHHHHHHhcC
Q psy6089 256 LHVYQKIMTLG 266 (313)
Q Consensus 256 ~~l~~~L~~ag 266 (313)
..+++.|....
T Consensus 110 ~~~~~~L~~~~ 120 (355)
T 3ttg_A 110 EEFVNHLKKYL 120 (355)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 99999987654
No 27
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=87.72 E-value=3.8 Score=39.06 Aligned_cols=85 Identities=15% Similarity=0.012 Sum_probs=54.6
Q ss_pred CCeEEEEEeCccHHHHHhhcccc-CC-CCCCcceEEEEEC----C--cccEEEEe----cCCCCCceEEEEecccc--HH
Q psy6089 191 SKYTVINVVGPKAKQLLSELCDE-DI-NLHPFSYKRTDIG----Y--ASDVKLMG----FTHTGEPGYCLYIPSEY--AL 256 (313)
Q Consensus 191 ~~~~~l~l~GP~a~~vL~~l~~~-dl-~~~~~~~~~~~i~----~--~~~v~~~R----~~~~Ge~G~el~~~~~~--a~ 256 (313)
...+++.|+||+|.+++++++.. ++ ..+..+..-..+- + ...+.++. .|||||+--||+|--.. ..
T Consensus 22 ~~i~iiRiSG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~p~s~TgEd~~E~~~HGg~~v~~ 101 (462)
T 3geh_A 22 GSVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRHPQTRQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQ 101 (462)
T ss_dssp CSCEEEEEESTTHHHHHHHHEECCSCCCCCTTEEEEEEECCSSSCCCCEEEEEEEECTTCSSSSSCEEEEEECCSSSHHH
T ss_pred ceEEEEEeEchhHHHHHHHHhCCCCccCCCCcEEEEEecccCCCCCCcceEEEEEEcCCCCCcCCceEEEECCCCHHHHH
Confidence 46789999999999999999853 22 2233222222221 1 01244443 48999999999996644 45
Q ss_pred HHHHHHHhcCccCCceecCccch
Q psy6089 257 HVYQKIMTLGKDYNARDVGMFTQ 279 (313)
Q Consensus 257 ~l~~~L~~ag~~~g~~~~G~~a~ 279 (313)
.+.++|.+. |++++-..-+
T Consensus 102 ~~l~~~~~~----g~r~A~pGEF 120 (462)
T 3geh_A 102 QVLQLCLES----GARLAQPGEF 120 (462)
T ss_dssp HHHHHHHHT----TCEECCTTHH
T ss_pred HHHHHHHHC----CCeecCCchh
Confidence 677777775 6787755443
No 28
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=87.14 E-value=2 Score=41.09 Aligned_cols=65 Identities=9% Similarity=0.048 Sum_probs=50.7
Q ss_pred CCceEEEEEccCchHHHHHhhhcccC-cc-cCCCCEEEeeeecC-CCeeEEEEEEEEe-------cCCeEEEEcCCc
Q psy6089 99 SSFSKIKITCSDESLVDWLQQLCSND-VN-IPVGGISHTGMQNE-RGGYENDCILVRE-------TETSYFMVSPTS 165 (313)
Q Consensus 99 s~~~~i~v~~~G~dA~~fL~~l~t~d-i~-l~~G~~~~t~~ln~-~G~i~~d~~v~r~-------~~d~~~l~~~~~ 165 (313)
+.-+.|+|+ ||+|.+.++.++... .. .++-++.|+.+.++ +|.++|++.|..+ |||-.=+-|.++
T Consensus 22 ~~i~iiRiS--G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~p~s~TgEd~~E~~~HGg 96 (462)
T 3geh_A 22 GSVGIVRVS--GSQAIAIAQTLFDAPGKQVWESHRILYGYIRHPQTRQIVDEALLLLMKAPRSYTREDVVEFHCHGG 96 (462)
T ss_dssp CSCEEEEEE--STTHHHHHHHHEECCSCCCCCTTEEEEEEECCSSSCCCCEEEEEEEECTTCSSSSSCEEEEEECCS
T ss_pred ceEEEEEeE--chhHHHHHHHHhCCCCccCCCCcEEEEEecccCCCCCCcceEEEEEEcCCCCCcCCceEEEECCCC
Confidence 456889999 999999999998643 33 46778999999994 6889999999877 677555555444
No 29
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=85.59 E-value=2.5 Score=40.51 Aligned_cols=64 Identities=6% Similarity=0.079 Sum_probs=49.6
Q ss_pred CCceEEEEEccCchHHHHHhhhccc-----Ccc-cCCCCEEEeeeecCCCeeEEEEEEEEe-------cCCeEEEEcCCc
Q psy6089 99 SSFSKIKITCSDESLVDWLQQLCSN-----DVN-IPVGGISHTGMQNERGGYENDCILVRE-------TETSYFMVSPTS 165 (313)
Q Consensus 99 s~~~~i~v~~~G~dA~~fL~~l~t~-----di~-l~~G~~~~t~~ln~~G~i~~d~~v~r~-------~~d~~~l~~~~~ 165 (313)
+.-+.|+|+ ||+|.+.++.++.. ++. .++-++.|+.+.++ |.++|++.|..+ |||-.=+-|.++
T Consensus 28 ~~i~iiRiS--G~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iD~~l~~~f~~P~s~TgEd~~E~~~HGg 104 (476)
T 3gee_A 28 GALAIVRIS--GAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDG-EEMVDEVIALVFRAPRSFTAEQMVEFTCHGG 104 (476)
T ss_dssp CSEEEEEEE--STTHHHHHHHHEEESSSCCCGGGCCTTEEEEEEEESS-SCEEEEEEEEEEBTTBSSSSSCEEEEEEECC
T ss_pred cEEEEEEee--chhHHHHHHHHhCcccccccccCCCCCEEEEEEEecC-CcccceEEEEEecCCCCCCCCCeEEEECCCC
Confidence 456789999 99999999999964 233 46778999999986 899999999876 666555555443
No 30
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=83.77 E-value=6.3 Score=37.70 Aligned_cols=85 Identities=8% Similarity=0.036 Sum_probs=52.9
Q ss_pred CCeEEEEEeCccHHHHHhhcccc-----CC-CCCCcceEEEEE-C-Cc--ccEEEE----ecCCCCCceEEEEeccccH-
Q psy6089 191 SKYTVINVVGPKAKQLLSELCDE-----DI-NLHPFSYKRTDI-G-YA--SDVKLM----GFTHTGEPGYCLYIPSEYA- 255 (313)
Q Consensus 191 ~~~~~l~l~GP~a~~vL~~l~~~-----dl-~~~~~~~~~~~i-~-~~--~~v~~~----R~~~~Ge~G~el~~~~~~a- 255 (313)
...+++.|+||+|.+++++++.. ++ ..+.....-..+ . +. ..+.++ -.|||||+--||+|-...+
T Consensus 28 ~~i~iiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~s~TgEd~~E~~~HGg~~v 107 (476)
T 3gee_A 28 GALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDGEEMVDEVIALVFRAPRSFTAEQMVEFTCHGGPVV 107 (476)
T ss_dssp CSEEEEEEESTTHHHHHHHHEEESSSCCCGGGCCTTEEEEEEEESSSCEEEEEEEEEEBTTBSSSSSCEEEEEEECCHHH
T ss_pred cEEEEEEeechhHHHHHHHHhCcccccccccCCCCCEEEEEEEecCCcccceEEEEEecCCCCCCCCCeEEEECCCCHHH
Confidence 46899999999999999999853 22 122222211111 1 10 124443 3489999999999976543
Q ss_pred -HHHHHHHHhcCccCCceecCccch
Q psy6089 256 -LHVYQKIMTLGKDYNARDVGMFTQ 279 (313)
Q Consensus 256 -~~l~~~L~~ag~~~g~~~~G~~a~ 279 (313)
..+.+.|.+. |++++-..-+
T Consensus 108 ~~~~l~~~~~~----g~r~A~pGEF 128 (476)
T 3gee_A 108 VGRVLRLMLDN----GCRLAEPGEF 128 (476)
T ss_dssp HHHHHHHHHHT----TCEECCTTHH
T ss_pred HHHHHHHHHHC----CCeecCCcch
Confidence 5566666665 6777755443
No 31
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=83.19 E-value=3.2 Score=42.47 Aligned_cols=78 Identities=12% Similarity=0.147 Sum_probs=59.9
Q ss_pred C-eEEEeCCC-ceEEEEEccCchHHHHHhhhcccCcc---cCCCCEEEeeeecCCCeeEEEEEEEEec---CCeEEEEcC
Q psy6089 92 G-VGIIDMSS-FSKIKITCSDESLVDWLQQLCSNDVN---IPVGGISHTGMQNERGGYENDCILVRET---ETSYFMVSP 163 (313)
Q Consensus 92 ~-~~l~Dls~-~~~i~v~~~G~dA~~fL~~l~t~di~---l~~G~~~~t~~ln~~G~i~~d~~v~r~~---~d~~~l~~~ 163 (313)
. |.+-|+|. +..|.|. ||.|.+.|+.++..|+. ++..+...+.+ .| ..++|.|.+ ++.|-|.++
T Consensus 591 ~~v~i~d~s~~~~~~~l~--Gp~a~~~l~~~~~~dl~~~~~~~~~~~~~~~---~g---~~~~~~r~~~tge~g~ei~~~ 662 (830)
T 1pj5_A 591 DWVQVRDTTGGTCCIGLW--GPLARDLVSKVSDDDFTNDGLKYFRAKNVVI---GG---IPVTAMRLSYVGELGWELYTS 662 (830)
T ss_dssp CCCEEEECGGGEEEEEEE--STTHHHHHTTTCCSCCSTTTSCTTBEEEEEE---TT---EEEEEECCCTTSSSEEEEEEE
T ss_pred CeEEEEEccCCEEEEEEE--CcCHHHHHHHhcCcCCccccCCCceEEEEEE---CC---EEEEEEECcccCCCcEEEEec
Confidence 5 99999974 8999999 99999999999877773 45565554432 22 257788874 789999998
Q ss_pred CcchHHHHHHHHhh
Q psy6089 164 TSQQTRVFEWMKNH 177 (313)
Q Consensus 164 ~~~~~~~~~~L~~~ 177 (313)
+.....+++.|...
T Consensus 663 ~~~~~~l~~~l~~a 676 (830)
T 1pj5_A 663 ADNGQRLWDALWQA 676 (830)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 88888888877553
No 32
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=81.87 E-value=5.9 Score=41.33 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=60.8
Q ss_pred CceEEEEecCCeEEEEEeCccHHHHHhhccccCC-CCCCcceEEEEEC---Cc--ccEEEEecCCCCCceEEEEeccccH
Q psy6089 182 HYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIG---YA--SDVKLMGFTHTGEPGYCLYIPSEYA 255 (313)
Q Consensus 182 ~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl-~~~~~~~~~~~i~---~~--~~v~~~R~~~~Ge~G~el~~~~~~a 255 (313)
.+|-+-|+|. +..|.|+||.|.+.|+.++..|+ .++..+.+-..+- |. .+..+.|. +++.|-|.++...+
T Consensus 622 ~~~gl~D~S~-~g~i~v~G~da~~fL~~l~t~dv~~l~~g~~~y~~~l~~~G~i~~D~~v~r~---~~~~~~l~~~~~~~ 697 (965)
T 2gag_A 622 DSVGMLDATT-LGKIEIRGKDAAEFLNRIYTNGYTKLKVGMGRYGVMCKADGMIFDDGVTLRL---AEDRFLLHTTTGGA 697 (965)
T ss_dssp HSCEEEECTT-SEEEEEESTTHHHHHHHHBSSCCTTCCTTBEEEEEEECTTSCEEEEEEEEEE---ETTEEEEEECTTTH
T ss_pred hCeEEEeCCc-eEEEEEeCcCHHHHHHHhhccCCCcCCCCCEEEEEEECCCCcEEEEEEEEEE---eCCEEEEEECcccH
Confidence 3688899975 79999999999999999999888 7777766544331 11 13456675 46789999999988
Q ss_pred HHHHHHHHhc
Q psy6089 256 LHVYQKIMTL 265 (313)
Q Consensus 256 ~~l~~~L~~a 265 (313)
..+++.|...
T Consensus 698 ~~~~~~l~~~ 707 (965)
T 2gag_A 698 ADVLDWLEEW 707 (965)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887643
No 33
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=75.20 E-value=4 Score=39.18 Aligned_cols=51 Identities=10% Similarity=0.112 Sum_probs=42.4
Q ss_pred CCceEEEEEccCchHHHHHhhhcc-cCcccCCCCEEEeeeecCCCeeEEEEEEEEe
Q psy6089 99 SSFSKIKITCSDESLVDWLQQLCS-NDVNIPVGGISHTGMQNERGGYENDCILVRE 153 (313)
Q Consensus 99 s~~~~i~v~~~G~dA~~fL~~l~t-~di~l~~G~~~~t~~ln~~G~i~~d~~v~r~ 153 (313)
+.-+.|+|+ ||+|.+.++.++. .+. .++-++.|+.+.+ +|.++|++.|...
T Consensus 46 ~~i~iiRiS--G~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~iDe~~v~~~ 97 (482)
T 1xzp_A 46 GAIAILRLS--GPDSWKIVQKHLRTRSK-IVPRKAIHGWIHE-NGEDVDEVVVVFY 97 (482)
T ss_dssp CSCEEEEEE--SSSHHHHHHTTEEESSC-CCBTBCEEEEECC-SSCCCCEEEEEEE
T ss_pred ceEEEEEcc--cHHHHHHHHHHhcCCCC-CCCceEEEEEEec-CCeeeeEEEEEEE
Confidence 356799999 9999999999995 222 3678899999999 8999999998765
No 34
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=60.08 E-value=2.4 Score=39.36 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=21.6
Q ss_pred CCcccccccchhHHHHHHhHHcCCCC
Q psy6089 1 MNGNSLQGAGGIGRAVAEWMTHGEAT 26 (313)
Q Consensus 1 ~ns~g~~~~gG~g~~la~wi~~g~~~ 26 (313)
+++.|++++.++|+.||+||....++
T Consensus 362 ~~g~G~~~ap~~g~~la~~i~g~~~~ 387 (438)
T 3dje_A 362 ASGRGFKYLPSIGNLIVDAMEGKVPQ 387 (438)
T ss_dssp CTTCCGGGTTTHHHHHHHHHHTCCCH
T ss_pred CCCcchhhhHHHHHHHHHHHhCCCCh
Confidence 35689999999999999999755444
No 35
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=43.27 E-value=74 Score=30.20 Aligned_cols=86 Identities=9% Similarity=-0.004 Sum_probs=50.4
Q ss_pred CCeEEEEEeCccHHHHHhhccc-cCCCCCCc-ceEEEEECCc--ccEEEE----ecCCCCCceEEEEeccccH--HHHHH
Q psy6089 191 SKYTVINVVGPKAKQLLSELCD-EDINLHPF-SYKRTDIGYA--SDVKLM----GFTHTGEPGYCLYIPSEYA--LHVYQ 260 (313)
Q Consensus 191 ~~~~~l~l~GP~a~~vL~~l~~-~dl~~~~~-~~~~~~i~~~--~~v~~~----R~~~~Ge~G~el~~~~~~a--~~l~~ 260 (313)
...+++.|+||+|.++++++++ ..+.-|.. .+..+.=.+. ..+.+. ..+|+||+-.|+.|.-..+ ..+.+
T Consensus 46 ~~i~iiRiSG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDe~~v~~~~~p~Sft~Ed~ve~~~hGg~~v~~~~l~ 125 (482)
T 1xzp_A 46 GAIAILRLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLD 125 (482)
T ss_dssp CSCEEEEEESSSHHHHHHTTEEESSCCCBTBCEEEEECCSSCCCCEEEEEEECTTSSSSSSCEEEEEECSCHHHHHHHHH
T ss_pred ceEEEEEcccHHHHHHHHHHhcCCCCCCCceEEEEEEecCCeeeeEEEEEEEeCCCcCCCCCEeeecCcCcHHHHHHHHH
Confidence 3578999999999999999985 22211111 1121110110 123332 3589999999999866443 44555
Q ss_pred HHHhcCccCCceecCccchh
Q psy6089 261 KIMTLGKDYNARDVGMFTQR 280 (313)
Q Consensus 261 ~L~~ag~~~g~~~~G~~a~~ 280 (313)
.|.+. |++++-...+.
T Consensus 126 ~l~~~----g~r~A~~Geft 141 (482)
T 1xzp_A 126 LFLKS----GARMAEPGEFT 141 (482)
T ss_dssp HHHTT----TCEECCTTHHH
T ss_pred HHHHc----CCEeCCCCCcC
Confidence 66543 66766544333
No 36
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=28.03 E-value=24 Score=18.72 Aligned_cols=14 Identities=14% Similarity=0.679 Sum_probs=11.0
Q ss_pred HHHHHhHHcCCCCC
Q psy6089 14 RAVAEWMTHGEATQ 27 (313)
Q Consensus 14 ~~la~wi~~g~~~~ 27 (313)
..|-+|+.+|-|+.
T Consensus 4 ellgqwlkdggpss 17 (26)
T 1rij_A 4 ELLGQWLKDGGPSS 17 (26)
T ss_dssp HHHHHHHHTTGGGS
T ss_pred HHHHHHHHcCCCCC
Confidence 46889999997753
Done!