RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6089
(313 letters)
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 291 bits (748), Expect = 1e-92
Identities = 69/371 (18%), Positives = 134/371 (36%), Gaps = 61/371 (16%)
Query: 1 MNGNSLQGAGGIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIREVVGSTYR 60
+ + G+ +A+AE +T G + +L D+ RF D+ +Y+ + ++ Y
Sbjct: 357 AEAVWVTHSAGVAKAMAELLTTGRSETDLGECDITRFEDVQLTPEYVSETSQQNFVEIYD 416
Query: 61 VGDPRPEMPPG------------------------------------------------- 71
V P
Sbjct: 417 VLHPLQPRLSPRNLRVSPFHARHKELGAFFLEAGGWERPYWFEANAALLKEMPAEWLPPA 476
Query: 72 --TFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNIPV 129
+ E V + DM+ +++++ + LQ+L + D+
Sbjct: 477 RDAWSGMFSSPIAAAEAWKTRTAVAMYDMTPLKRLEVSGPG--ALKLLQELTTADLAKKP 534
Query: 130 GGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHY----IT 185
G +++T + + GG +D + R +E ++ + + + T FE H +
Sbjct: 535 GAVTYTLLLDHAGGVRSDITVARLSEDTFQLGANGNIDTAYFERAARHQTQSGSATDWVQ 594
Query: 186 LSDVTSKYTVINVVGPKAKQLLSELCDEDI---NLHPFSYKRTDIGYASDVKLMGFTHTG 242
+ D T I + GP A+ L+S++ D+D L F K IG V M ++ G
Sbjct: 595 VRDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGI-PVTAMRLSYVG 653
Query: 243 EPGYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPF 302
E G+ LY ++ ++ + G+ + G +R+EK W D+ + PF
Sbjct: 654 ELGWELYTSADNGQRLWDALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPF 713
Query: 303 ESGSAYRVKLD 313
E+G + VK+
Sbjct: 714 EAGLGFAVKMA 724
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG; 2.00A
{Leptospirillum rubarum}
Length = 355
Score = 129 bits (326), Expect = 5e-35
Identities = 43/245 (17%), Positives = 82/245 (33%), Gaps = 28/245 (11%)
Query: 77 KFFDF----ME-EEYRACFEGVGIIDMSS-FSKIKITCSDESLVDWLQQLCSNDV-NIPV 129
+ F E + R + G+ S I + E ++LQ + S D+
Sbjct: 15 ENLYFQGMLTEVSDTRIAHKKFGLFYPSVSRPSIFVE--GEDRKNFLQGIASQDILKQDE 72
Query: 130 GGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDV 189
+S++ N + D E + P + +K +L + ++D+
Sbjct: 73 KSLSYSFFLNPKARILFDAWCGN-FEDKIALFPPAGTREEFVNHLKKYLFFRTKAKITDM 131
Query: 190 TSKYTVINVVGPKAKQLLSELCDEDINLHPFSYKRTDIGYASDVKLMGFTHTG--EPGYC 247
+ + I +VGP+ +L L D + + F + GY + F H
Sbjct: 132 SDHFREIRLVGPETISVLLSLFDNNFSGSSF-RMLKNGGYV-LIHPTSFQHNLDVGLQAD 189
Query: 248 LYIPSEYALHVYQKIMTLGKDYN-------ARDVGMFTQRYMRIEKFIPFWAEDLNSVTT 300
L+IP + + + + + EK IP + +LN
Sbjct: 190 LFIPIDQFETTQKSLEDFTSNKGGVLLDESSYLA-------YLTEKGIPLFPSELNDSFF 242
Query: 301 PFESG 305
P E+G
Sbjct: 243 PAEAG 247
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 116 bits (292), Expect = 4e-29
Identities = 48/229 (20%), Positives = 107/229 (46%), Gaps = 10/229 (4%)
Query: 85 EYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSND-VNIPVGGISHTGMQNERGG 143
E +A + VG++D ++ KI+I D + L ++ +N + VG + M G
Sbjct: 616 ESKAVRDSVGMLDATTLGKIEIRGKDAAEF--LNRIYTNGYTKLKVGMGRYGVMCKADGM 673
Query: 144 YENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHY---ITLSDVTSKYTVINVVG 200
+D + +R E + + + T V +W++ L T+ +T + VT + + VVG
Sbjct: 674 IFDDGVTLRLAEDRFLLHTTTGGAADVLDWLEEWLQTEWPDLDVTCTSVTEQLATVAVVG 733
Query: 201 PKAKQLLSELCDE----DINLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYAL 256
P+++ ++++L + ++K + + ++ + +GE + + +P+ + L
Sbjct: 734 PRSRDVIAKLASTVDVSNEGFKFMAFKDVVLDSGIEARISRISFSGELAFEIAVPAWHGL 793
Query: 257 HVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESG 305
V++ + G+++N G T +R EK +D + TP ++G
Sbjct: 794 RVWEDVYAAGEEFNITPYGTETMHVLRAEKGFIIVGQDTDGTVTPQDAG 842
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima}
SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Length = 364
Score = 112 bits (284), Expect = 5e-29
Identities = 61/249 (24%), Positives = 117/249 (46%), Gaps = 40/249 (16%)
Query: 84 EEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDV-NIPVGGISHTGMQNERG 142
EE A + VG+ D+S + + + V ++ L +ND ++P G ++ M NE G
Sbjct: 34 EEVMAVRKSVGMFDVSHMGEFLVKGPE--AVSFIDFLITNDFSSLPDGKAIYSVMCNENG 91
Query: 143 GYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPK 202
G +D ++ + + MV + + F W+K+H + +S+++ +I GPK
Sbjct: 92 GIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKNFD-VEVSNISDTTALIAFQGPK 150
Query: 203 AKQLLSELCDEDI-NLHPFSYKRTDI----------GYASDVKLMGFTHTGEPGYCLYIP 251
A++ L EL ++ + + +S++++ + GY TGE G+ L +
Sbjct: 151 AQETLQELVEDGLEEIAYYSFRKSIVAGVETLVSRTGY-----------TGEDGFELMLE 199
Query: 252 SEYALHVYQKIMTLGKDYN-------ARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFES 304
++ A V+ +M L + + ARDV R+E + +D++ T PFE
Sbjct: 200 AKNAPKVWDALMNLLRKIDGRPAGLGARDV-------CRLEATYLLYGQDMDENTNPFEV 252
Query: 305 GSAYRVKLD 313
G ++ VKL+
Sbjct: 253 GLSWVVKLN 261
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein,
alpha-beta, beta-barrel, structural genomics, PSI,
protein structure initiative; 2.08A {Bacillus subtilis}
Length = 365
Score = 109 bits (275), Expect = 1e-27
Identities = 69/252 (27%), Positives = 117/252 (46%), Gaps = 46/252 (18%)
Query: 84 EEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDV-NIPVGGISHTGMQNERG 142
+E+ A G+ D+S +++++ +D + +LQ+L +NDV + G +T M G
Sbjct: 38 KEHEAVRTAAGLFDVSHMGEVEVSGND--SLSFLQRLMTNDVSALTPGRAQYTAMCYPDG 95
Query: 143 GYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPK 202
G +D ++ ++ E Y +V S + WMK H + + + + + ++ V GPK
Sbjct: 96 GTVDDLLIYQKGENRYLLVINASNIDKDLAWMKEHAA--GDVQIDNQSDQIALLAVQGPK 153
Query: 203 AKQLLSELCDEDI-NLHPFSYK-------------RTDIGYASDVKLMGFTHTGEPGYCL 248
A+ +L L D D+ L PF++ RT GY TGE GY +
Sbjct: 154 AEAILKNLTDADVSALKPFAFIDEADISGRKALISRT--GY-----------TGEDGYEI 200
Query: 249 YIPSEYALHVYQKIMTLGKDYN-------ARDVGMFTQRYMRIEKFIPFWAEDLNSVTTP 301
Y S+ A+H+++KI+ G Y ARD +R E IP + ++L TP
Sbjct: 201 YCRSDDAMHIWKKIIDAGDAYGLIPCGLGARDT-------LRFEANIPLYGQELTRDITP 253
Query: 302 FESGSAYRVKLD 313
E+G + VK
Sbjct: 254 IEAGIGFAVKHK 265
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A
{Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*
Length = 369
Score = 104 bits (262), Expect = 8e-26
Identities = 48/250 (19%), Positives = 104/250 (41%), Gaps = 30/250 (12%)
Query: 76 PKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDV-NIPVGGISH 134
P F +E+ Y+ E V I D+++ +++I+ D + +Q + D+ +G +
Sbjct: 38 PAAFGSIEDSYKHLKEHVQIWDVAAERQVEISGKD--SAELVQLMTCRDLSKSKIGRCYY 95
Query: 135 TGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYT 194
+ +E G ND ++++ E +++ S + + + + V
Sbjct: 96 CPIIDENGNLVNDPVVLKLDENKWWISIADSDVIFFAKGLASGHK----FDVKIVEPVVD 151
Query: 195 VINVVGPKAKQLLSELCDEDI-NLHPFSYKRTDIGYASDVKLM----GFTHTGEPGYCLY 249
++ + GPK+ L+ ++ + I L F + D K + G++ + GY +Y
Sbjct: 152 IMAIQGPKSFALMEKVFGKKITELKFFGFDYFDFE---GTKHLIARSGWS--KQGGYEVY 206
Query: 250 IP-SEYALHVYQKIMTLGKDYN-----ARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFE 303
+ ++ +Y + +GK++N + RIE + + D ++ PFE
Sbjct: 207 VENTQSGQKLYDHLFEVGKEFNVGPGCPNLI-------ERIESALLSYGNDFDNNDNPFE 259
Query: 304 SGSAYRVKLD 313
G V LD
Sbjct: 260 CGFDQYVSLD 269
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of
glycine cleavage system, structural genomics, protein
structure initiative; HET: MSE; 1.70A {Escherichia coli
K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A*
3a8k_A*
Length = 381
Score = 94.5 bits (236), Expect = 3e-22
Identities = 51/252 (20%), Positives = 101/252 (40%), Gaps = 50/252 (19%)
Query: 84 EEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVN--IPVGGISHTGMQNER 141
+E+ A G+ D+S + + + S ++L+ L +NDV G ++GM N
Sbjct: 47 DEHHAVRTDAGMFDVSHMTIVDLRGSR--TREFLRYLLANDVAKLTKSGKALYSGMLNAS 104
Query: 142 GGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGP 201
GG +D I+ TE + +V ++ + + W+ H + + V ++I V GP
Sbjct: 105 GGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHA--EPFGIEITVRDDLSMIAVQGP 162
Query: 202 KAKQLLSELCDEDINLHPFSYK-------------RTDIGYASDVKLMGFTHTGEPGYCL 248
A+ + L ++ K T GY TGE GY +
Sbjct: 163 NAQAKAATLFNDAQRQAVEGMKPFFGVQAGDLFIATT--GY-----------TGEAGYEI 209
Query: 249 YIPSEYALHVYQKIMT-------LGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTP 301
+P+E A ++ ++ LG ARD +R+E + + ++++ +P
Sbjct: 210 ALPNEKAADFWRALVEAGVKPCGLG----ARDT-------LRLEAGMNLYGQEMDETISP 258
Query: 302 FESGSAYRVKLD 313
+ + + +
Sbjct: 259 LAANMGWTIAWE 270
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken
structural genomics/proteomics initiative, RSGI; 1.50A
{Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Length = 401
Score = 92.3 bits (230), Expect = 2e-21
Identities = 61/277 (22%), Positives = 106/277 (38%), Gaps = 67/277 (24%)
Query: 84 EEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDV-NIPVGGISHTGMQNERG 142
EE+ A VGI D+S +I D + +LQ + +ND+ P ++T + NERG
Sbjct: 38 EEHLAVRNAVGIFDVSHMGEIVFRGKD--ALKFLQYVTTNDISKPPAISGTYTLVLNERG 95
Query: 143 GYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHY-----ITLSDVTSKYTVIN 197
+++ ++ Y M+ + +++ W T + + T +
Sbjct: 96 AIKDETLVFNMGNNEYLMICDSDAFEKLYAWFTYLKRTIEQFTKLDLEIELKTYDIAMFA 155
Query: 198 VVGPKAKQLLSELCDEDIN-LHPFSYKRTDI----------GYASDVKLMGFTHTGEPGY 246
V GPKA+ L +L DIN + F + ++ GY TGE G+
Sbjct: 156 VQGPKARDLAKDLFGIDINEMWWFQARWVELDGIKMLLSRSGY-----------TGENGF 204
Query: 247 CLYIPS--------------EYALHVYQKIMTLGKDYN-------ARDVGMFTQRYMRIE 285
+YI E ALHV+++I+ GK Y ARD +R+E
Sbjct: 205 EVYIEDANPYHPDESKRGEPEKALHVWERILEEGKKYGIKPCGLGARDT-------LRLE 257
Query: 286 KFIPFWAEDLNSV---------TTPFESGSAYRVKLD 313
+ + + TP ++ + + D
Sbjct: 258 AGYTLYGNETKELQLLSTDIDEVTPLQANLEFAIYWD 294
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase,
structural genomics; 1.60A {Bartonella henselae}
Length = 393
Score = 89.9 bits (224), Expect = 2e-20
Identities = 44/238 (18%), Positives = 84/238 (35%), Gaps = 43/238 (18%)
Query: 84 EEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDV-NIPVGGISHTGMQNERG 142
+E+ G+ D+S I + V++L D + +G ++ + NER
Sbjct: 67 KEHLHTRAHAGLFDISHMKLIAVEGPK--AVEFLSYALPVDAALLKIGQSRYSYLLNERA 124
Query: 143 GYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPK 202
G +D IL R E + +V+ F ++ + + ++ + GP+
Sbjct: 125 GILDDLILTRLAECRFMLVANAGNAQADFAELEKRAFG---FECQVIALERVLLALQGPQ 181
Query: 203 AKQLLSELCDEDINLHPFSYKRTDI-------GYASDVKLMGFTHTGEPGYCLYIPSEYA 255
A +L++ L GY TGE G+ + +P A
Sbjct: 182 AAAVLADAGLPGNELLFMQGFEPQQDWFITRSGY-----------TGEDGFEIALPIGCA 230
Query: 256 LHVYQKIMT--------LGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESG 305
+ +K++ L ARD +R+E + D+ TTP ++
Sbjct: 231 RALAEKLLGDSRVEWVGLA----ARDS-------LRLEAGLCLHGNDITPDTTPIDAA 277
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo
sapiens} PDB: 1wsv_A*
Length = 375
Score = 87.5 bits (218), Expect = 1e-19
Identities = 47/253 (18%), Positives = 92/253 (36%), Gaps = 47/253 (18%)
Query: 84 EEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDV-NIPVGGISHTGMQNERG 142
+ + + + D+S + KI SD V ++ L D+ + + + NE G
Sbjct: 39 DSHLHTRQHCSLFDVSHMLQTKILGSD--RVKLMESLVVGDIAELRPNQGTLSLFTNEAG 96
Query: 143 GYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLP--TKHYITLSDVTSKYTVINVVG 200
G +D I+ +E ++VS + M++ + + ++ + G
Sbjct: 97 GILDDLIVTNTSEGHLYVVSNAGCWEKDLALMQDKVRELQNQGRDVGLEVLDNALLALQG 156
Query: 201 PKAKQLLSELCDEDI-NLHPFSYKRTDI-----------GYASDVKLMGFTHTGEPGYCL 248
P A Q+L +D+ L + ++ GY TGE G +
Sbjct: 157 PTAAQVLQAGVADDLRKLPFMTSAVMEVFGVSGCRVTRCGY-----------TGEDGVEI 205
Query: 249 YIPSEYALHVYQKIMT--------LGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTT 300
+P A+H+ I+ L ARD +R+E + + D++ TT
Sbjct: 206 SVPVAGAVHLATAILKNPEVKLAGLA----ARDS-------LRLEAGLCLYGNDIDEHTT 254
Query: 301 PFESGSAYRVKLD 313
P E ++ +
Sbjct: 255 PVEGSLSWTLGKR 267
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.30A {Escherichia coli}
SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Length = 338
Score = 53.9 bits (130), Expect = 2e-08
Identities = 30/224 (13%), Positives = 70/224 (31%), Gaps = 38/224 (16%)
Query: 83 EEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVN-IPVGGISHTGMQNER 141
+ + + ++ + ++ IT +D ++Q + DV+ + + +
Sbjct: 21 RQPTASARLPLTLMTLDDWALATITGADS--EKYMQGQVTADVSQMAEDQHLLAAHCDAK 78
Query: 142 GGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVT----SKYTVIN 197
G ++ L R + + S + + K Y S VT + ++
Sbjct: 79 GKMWSNLRLFR-DGDGFAWIERRSVREPQLTEL------KKYAVFSKVTIAPDDERVLLG 131
Query: 198 VVGPKAKQLLSELCDEDINLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALH 257
V G +A+ L+ L E + + L+ F H + + A
Sbjct: 132 VAGFQARAALANLFSELPSKEK------QVVKEGATTLLWFEHPA-ERFLIVTDEATANM 184
Query: 258 VYQKIMTLGK-----DYNARDV-------GMFTQRYMRIEKFIP 289
+ K+ + + A ++ +FIP
Sbjct: 185 LTDKLRGEAELNNSQQWLALNIEAGFPVIDAANS-----GQFIP 223
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 46.7 bits (111), Expect = 5e-06
Identities = 7/46 (15%), Positives = 15/46 (32%)
Query: 1 MNGNSLQGAGGIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQY 46
G + + GR A+ ++ Q L H++ +
Sbjct: 352 GAGWAFKFVPLFGRICADLAVEDSTAYDISRLAPQSALLEHHHHHH 397
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 46.0 bits (110), Expect = 7e-06
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 1 MNGNSLQGAGGIGRAVAEWMTHGEATQELLSFDVQRF 37
+G+ A +G VAE +T G+ + +D RF
Sbjct: 333 FSGHGFMMAPAVGEMVAELITKGKTKLPVEWYDPYRF 369
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 44.9 bits (107), Expect = 2e-05
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 1 MNGNSLQGAGGIGRAVAEWMTHGEATQELLSFDVQRF 37
+G G G +A + + E + F ++RF
Sbjct: 353 WGTGGFKGTPGAGFTLAHTIANDEPHELNKPFSLERF 389
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 43.5 bits (103), Expect = 6e-05
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 9 AGGIGRAVAEWMTHGEATQELLSFDVQRF 37
+ G+G +++ G+ ++ F + R
Sbjct: 350 SSGVGEVLSQLALTGKTEHDISIFSINRP 378
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 1e-04
Identities = 52/382 (13%), Positives = 112/382 (29%), Gaps = 146/382 (38%)
Query: 29 LLSFDVQRFL---DLH-------NNRQYLQQRIREVVGSTYR----VGDPRPEMPPGTFF 74
L F+ +L D+H + +E++ + P + F
Sbjct: 88 LTEFE-NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 75 K------PKFF----------DFMEE------EYRACFEGVGIIDMSS-----FSKIKIT 107
+ + D+ EE Y +I S+ + +
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD--LIKFSAETLSELIRTTLD 204
Query: 108 CSDE-----SLVDWLQQ---------LCSNDVNIP---------------VGGISHTGMQ 138
++++WL+ L S ++ P + G + ++
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 139 NE-RG--GYEND-----CILVRETETSYFMVSPT-----------SQQTRVFEWMKNHLP 179
+ +G G+ I ++ S+F+ + P
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY---------P 315
Query: 180 TKHYITLSDVTSKYTVIN----------VVGPKAKQLLSELCDEDINLHPFSYKRTDIGY 229
+L + ++ N + +Q+ + N H + K+ +I
Sbjct: 316 N---TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV--NKTNSHLPAGKQVEIS- 369
Query: 230 ASDVKLM-GFTH---TGEPGYCLYIPSEYALHVY-QKIM-TLGKDYNARDVGMFTQRYMR 283
L+ G + +G P S Y L++ +K G D +R F++R ++
Sbjct: 370 -----LVNGAKNLVVSGPP------QSLYGLNLTLRKAKAPSGLD-QSRIP--FSERKLK 415
Query: 284 IE-KFIPFWAEDLNSVTTPFES 304
+F+P V +PF S
Sbjct: 416 FSNRFLP--------VASPFHS 429
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 41.8 bits (99), Expect = 2e-04
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 1 MNGNSLQGAGGIGRAVAEWMTHGEATQEL--LSFDVQRF 37
G +Q + +G A A + H L D
Sbjct: 336 QGGYGIQTSAAMGEASAALIRHQPLPAHLREHGLDEAML 374
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 4e-04
Identities = 46/381 (12%), Positives = 97/381 (25%), Gaps = 130/381 (34%)
Query: 6 LQGAGGIGRAV--AE----------------WMTHGEATQELLSFDVQRFLDLHNNRQYL 47
+ G G G+ + W+ ++ + L L+
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNW 213
Query: 48 QQRIREVVGSTYRVGDPRPEMPPGTFFKPKFFDFMEEEYRACFEGVGIID-------MSS 100
R R+ + E+ + + Y C ++ ++
Sbjct: 214 TSRSDHSSNIKLRIHSIQAEL--------RRL-LKSKPYENCLL---VLLNVQNAKAWNA 261
Query: 101 F---SKIKITCSDESLVDWLQ----------------------QLCSNDVNIPVGGISH- 134
F KI +T + + D+L L ++ +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 135 -------------TGMQNERGGYEN----DCILVRET-ETSYFMVSPTSQQTR-----VF 171
+++ ++N +C + E+S ++ P + VF
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 172 EWMKN-HLPTKHYITLSDVTSKYTVINVVGPKAKQLLSE-------------------LC 211
+ H+PT + K V+ VV K L E
Sbjct: 382 P--PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 212 DEDINLHPF---SYKRTDIGYASDVKLMGFTHTGEPGY-CLYIPSEYALHVYQKIMTLGK 267
+ + LH Y + SD Y +I + H L
Sbjct: 440 ENEYALHRSIVDHYNIPK-TFDSD----DLIPPYLDQYFYSHIG--H--H-------LKN 483
Query: 268 DYNARDVGMFTQRYMRIEKFI 288
+ + +F ++ +F+
Sbjct: 484 IEHPERMTLFRMVFLDF-RFL 503
Score = 37.9 bits (87), Expect = 0.004
Identities = 48/342 (14%), Positives = 107/342 (31%), Gaps = 126/342 (36%)
Query: 24 EATQELLSFDVQRFLDLHNNRQYLQQRIREVVGSTYRVGDPRPE-------MPPGT---- 72
++ L D Q F + +R ++R+ + + RP + G+
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL---LEL---RPAKNVLIDGV-LGSGKTW 165
Query: 73 -------FFKPK-FFDFMEEEYRACFEGVGI--IDMSSFSKIKITCSDESLVDWLQQLC- 121
+K + DF I +++ + S E++++ LQ+L
Sbjct: 166 VALDVCLSYKVQCKMDF------------KIFWLNLKN------CNSPETVLEMLQKLLY 207
Query: 122 ----------SNDVNIPVGGISHTGMQNERG-----GYENDCIL----VRETET-SYF-- 159
+ NI + H+ R YEN C+L V+ + + F
Sbjct: 208 QIDPNWTSRSDHSSNIKLR--IHSIQAELRRLLKSKPYEN-CLLVLLNVQNAKAWNAFNL 264
Query: 160 ----MVSPTSQQTRVFEWMKN----HLPTKHYI-TLSDVTSKYTVINVVGPKAKQLLSEL 210
++ T++ +V +++ H+ H+ TL+ K ++ + + + L E+
Sbjct: 265 SCKILL--TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 211 CDEDINLHPFSYKRTDIGYASDVKLMG-----FTHTGEPGYCLYIPSEYALHV--YQKIM 263
+P + ++ T + HV +
Sbjct: 323 LT----TNPRR-----------LSIIAESIRDGLAT----------WDNWKHVNCDKLTT 357
Query: 264 TLGKDYNARDVGMFTQRYMRIEKF-----IP------FWAED 294
+ N + + + + R+ F IP W +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Score = 37.5 bits (86), Expect = 0.006
Identities = 24/157 (15%), Positives = 48/157 (30%), Gaps = 46/157 (29%)
Query: 33 DVQRFLDLH-NNRQYLQQRIREVVGSTYRVG---DPRPEMPPG----------------- 71
+ L + N L + I + Y + D +PP
Sbjct: 430 SIYLELKVKLENEYALHRSIVD----HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 72 -----TFFKPKFFD--FMEEEYR----ACFEGVGIID-MSSFSKIK--ITCSD------- 110
T F+ F D F+E++ R A I++ + K I +D
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Query: 111 ESLVDWLQQLCSNDVNIPVGGISHTGMQNERGGYEND 147
+++D+L ++ N + + + E +
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Score = 37.1 bits (85), Expect = 0.007
Identities = 37/313 (11%), Positives = 73/313 (23%), Gaps = 129/313 (41%)
Query: 34 VQRFLDLHNN-RQYLQQRIREVVGSTYRVGDPRPEMPPGTFFKPKFFDFMEEEYRACFEG 92
++ L +N + ++ ++ S+ V +P EYR F+
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-------------------AEYRKMFDR 377
Query: 93 VGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNIPVGGISHTGMQNERGGYENDCIL-- 150
+ + F +IP + ++
Sbjct: 378 LSV-----FPP--------------------SAHIPTILL---------------SLIWF 397
Query: 151 VRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSEL 210
+V+ + + V + K + I L L
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE-------------------LKVK 438
Query: 211 CDEDINLHPF---SYKRTDIGYASDVKLMGFTHTGEPGY-CLYIP---------SEYAL- 256
+ + LH Y + SD Y +I L
Sbjct: 439 LENEYALHRSIVDHYNIPK-TFDSD----DLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 257 -HVY-------QKIMTLG-------------------KDYNARDVGMFTQRYMRIEKFIP 289
V+ QKI K Y + + + I F+P
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 290 FWAEDLNSVTTPF 302
E+L + + +
Sbjct: 554 KIEENL--ICSKY 564
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 39.5 bits (93), Expect = 0.001
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 2 NGNSLQGAGGIGRAVAEWMTHGEATQELLS-FDVQRF 37
N + A G +++ + + E Q+ L F + R
Sbjct: 341 FRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRK 377
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 39.3 bits (92), Expect = 0.001
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 1 MNGNSLQGAGGIGRAVAEWMTHGEATQELLSFDVQRF 37
++G+ + A +G A++ ++ +L F + RF
Sbjct: 335 LSGHGFKFASVLGEIAADFAQDKKSDFDLTPFRLSRF 371
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 39.0 bits (91), Expect = 0.001
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 9/48 (18%)
Query: 1 MNGNSLQGAGGIGRAVAEWMTHGEATQ---------ELLSFDVQRFLD 39
+G+ + + IGR A E+ + + + + +R+
Sbjct: 396 TSGSGIMKSDSIGRVAAAVALGMESVELYGGVEMPVKWMGLEGRRYEQ 443
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 30.8 bits (70), Expect = 0.69
Identities = 6/18 (33%), Positives = 8/18 (44%), Gaps = 2/18 (11%)
Query: 8 GAGGIGRAVAEWM--THG 23
G G +G VA + G
Sbjct: 538 GTGALGAEVARHLVIERG 555
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 29.6 bits (67), Expect = 1.1
Identities = 3/11 (27%), Positives = 5/11 (45%)
Query: 8 GAGGIGRAVAE 18
G G +G +
Sbjct: 15 GRGALGSRCVQ 25
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 29.6 bits (67), Expect = 1.1
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 8 GAGGIGRAVAE 18
G G +G A+ E
Sbjct: 11 GKGALGSAILE 21
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 28.0 bits (63), Expect = 3.9
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 8 GAGGIGRAVAE 18
G+G +G V +
Sbjct: 30 GSGALGAEVVK 40
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis,
transferase; 2.00A {Leishmania major}
Length = 360
Score = 27.6 bits (62), Expect = 4.9
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 63 DPRPEMPPGTFFKPKFFDFMEEE 85
DP ++P F F+ E
Sbjct: 323 DPATKLPNNKDLPEDLFRFLPNE 345
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside
hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ;
1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A*
2jjb_A* 2wyn_A*
Length = 535
Score = 27.5 bits (60), Expect = 6.3
Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 16 VAEWMTHGEATQELLSFDVQRF-LDLHNNRQYLQQRIREVVGSTYRVGDPRPEMPPGTFF 74
V T + ++ + + Q + L + + P P + PG F
Sbjct: 64 VNVNFTLPKEGEKYVPPEGQSLREHIDGLWPVLTRSTENTEKWDSLLPLPEPYVVPGGRF 123
Query: 75 KPKFF 79
+ ++
Sbjct: 124 REVYY 128
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 27.2 bits (61), Expect = 6.9
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 8 GAGGIGRAVAE 18
A GIG A+ E
Sbjct: 9 SASGIGAALKE 19
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short
chain dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 26.9 bits (60), Expect = 7.4
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 8 GAGGIGRAVAE 18
A GIG A +
Sbjct: 9 CATGIGAATRK 19
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 27.1 bits (61), Expect = 8.7
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 12/52 (23%)
Query: 8 GAGGIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIREVVGSTY 59
G G IG+A+A + L F VQRF L+ RQ + E + +
Sbjct: 162 GLGRIGQAIA---------RRLKPFGVQRF--LYTGRQPRPEEAAE-FQAEF 201
>3mnf_A PAC2 family protein; PSI2, MCSG, structural genomics, protein
structure initiativ midwest center for structural
genomics; 2.97A {Streptomyces avermitilis}
Length = 250
Score = 26.6 bits (58), Expect = 9.0
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 5/75 (6%)
Query: 8 GAGGIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIREVVGSTYRVGDPRPE 67
AG + + + D + + D NR + + G ++ P
Sbjct: 17 DAGDAASTAVAHLDREWKGEVFAALDAEDYYDFQVNRPTV-----WLDGGVRKITWPTTR 71
Query: 68 MPPGTFFKPKFFDFM 82
+ K D +
Sbjct: 72 LSVVRVGGEKPRDLV 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.418
Gapped
Lambda K H
0.267 0.0785 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,964,028
Number of extensions: 293419
Number of successful extensions: 1022
Number of sequences better than 10.0: 1
Number of HSP's gapped: 980
Number of HSP's successfully gapped: 36
Length of query: 313
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 220
Effective length of database: 4,105,140
Effective search space: 903130800
Effective search space used: 903130800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)