BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6090
(674 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 105/270 (38%), Gaps = 71/270 (26%)
Query: 143 VPENIVSVLSEYT--EQGYRVIALASRT-------LSIDD-YKHLNYMKREDIEKDLEFL 192
V E I+SV+ E+ R +ALA+R + +DD K + Y E DL F+
Sbjct: 540 VKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSTKFMEY------ETDLTFV 593
Query: 193 GLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAV 252
G++ + + + + G I+ +DA ++V+MITGDN TAI++ + GI E V D
Sbjct: 594 GVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEDVAD---- 649
Query: 253 PGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMP 312
A TG+ + D +P
Sbjct: 650 --------------------------------------------RAYTGREF----DDLP 661
Query: 313 ELIPRIIVKGA-IFARMSSDXXXXXXXXXXXXGYYVAMCGDGANDCGALRAAHAGISLSE 371
R + A FAR+ AM GDG ND AL+ A GI++
Sbjct: 662 LAEQREACRRACCFARVEPTHKSKIVEYLQSFDEITAMTGDGVNDAPALKKAEIGIAMGS 721
Query: 372 --AESSVASPFTSTVANISCVLRIIREGRA 399
A + AS N S ++ + EGRA
Sbjct: 722 GTAVAKTASEMVLADDNFSTIVAAVEEGRA 751
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 105/269 (39%), Gaps = 69/269 (25%)
Query: 143 VPENIVSVLSEYT--EQGYRVIALASRT-------LSIDDYKHLNYMKREDIEKDLEFLG 193
V E I+SV+ E+ R +ALA+R + +DD +M + E DL F+G
Sbjct: 541 VKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSR--FM---EYETDLTFVG 595
Query: 194 LIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVP 253
++ + + + + G I+ +DA ++V+MITGDN TAI++ + GI E V D
Sbjct: 596 VVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVAD----- 650
Query: 254 GGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPE 313
A TG+ + D +P
Sbjct: 651 -------------------------------------------RAYTGREF----DDLPL 663
Query: 314 LIPRIIVKGA-IFARMSSDXXXXXXXXXXXXGYYVAMCGDGANDCGALRAAHAGISLSE- 371
R + A FAR+ AM GDG ND AL+ A GI++
Sbjct: 664 AEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSG 723
Query: 372 -AESSVASPFTSTVANISCVLRIIREGRA 399
A + AS N S ++ + EGRA
Sbjct: 724 TAVAKTASEMVLADDNFSTIVAAVEEGRA 752
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 105/269 (39%), Gaps = 69/269 (25%)
Query: 143 VPENIVSVLSEYT--EQGYRVIALASRT-------LSIDDYKHLNYMKREDIEKDLEFLG 193
V E I+SV+ E+ R +ALA+R + +DD +M + E DL F+G
Sbjct: 542 VKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSR--FM---EYETDLTFVG 596
Query: 194 LIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVP 253
++ + + + + G I+ +DA ++V+MITGDN TAI++ + GI E V D
Sbjct: 597 VVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVAD----- 651
Query: 254 GGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPE 313
A TG+ + D +P
Sbjct: 652 -------------------------------------------RAYTGREF----DDLPL 664
Query: 314 LIPRIIVKGA-IFARMSSDXXXXXXXXXXXXGYYVAMCGDGANDCGALRAAHAGISLSE- 371
R + A FAR+ AM GDG ND AL+ A GI++
Sbjct: 665 AEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSG 724
Query: 372 -AESSVASPFTSTVANISCVLRIIREGRA 399
A + AS N S ++ + EGRA
Sbjct: 725 TAVAKTASEMVLADDNFSTIVAAVEEGRA 753
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 105/269 (39%), Gaps = 69/269 (25%)
Query: 143 VPENIVSVLSEYT--EQGYRVIALASRT-------LSIDDYKHLNYMKREDIEKDLEFLG 193
V E I+SV+ E+ R +ALA+R + +DD +M + E DL F+G
Sbjct: 541 VKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSR--FM---EYETDLTFVG 595
Query: 194 LIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVP 253
++ + + + + G I+ +DA ++V+MITGDN TAI++ + GI E V D
Sbjct: 596 VVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVAD----- 650
Query: 254 GGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPE 313
A TG+ + D +P
Sbjct: 651 -------------------------------------------RAYTGREF----DDLPL 663
Query: 314 LIPRIIVKGA-IFARMSSDXXXXXXXXXXXXGYYVAMCGDGANDCGALRAAHAGISLSE- 371
R + A FAR+ AM GDG ND AL+ A GI++
Sbjct: 664 AEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSG 723
Query: 372 -AESSVASPFTSTVANISCVLRIIREGRA 399
A + AS N S ++ + EGRA
Sbjct: 724 TAVAKTASEMVLADDNFSTIVAAVEEGRA 752
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 37/248 (14%)
Query: 158 GYRVIALASRTLSIDDYKHLNYMKREDIE---KDLEFLGLIILENRLKPQTEGVIKELKD 214
G RV+ L + + +D+ +L F+GLI + + + + + +
Sbjct: 518 GERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRS 577
Query: 215 ARVKVVMITGDNIQTAISVAKECGIIDPG-ETVVDVSAVPGGLKECPKVYFTVSGVSAIQ 273
A +KV+M+TGD+ TA ++AK GII G ETV D++A ++ VS V+
Sbjct: 578 AGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAA---------RLNIPVSQVNPRD 628
Query: 274 TKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDXX 333
KA ++ S ++ +T + + I E+ +FAR S
Sbjct: 629 AKACVVHGSDLKD------------MTSEQLDDILKYHTEI---------VFARTSPQQK 667
Query: 334 XXXXXXXXXXGYYVAMCGDGANDCGALRAAHAGISLSEAESSVASPFTSTV---ANISCV 390
G VA+ GDG ND A + A G+++ A S V+ + N + +
Sbjct: 668 LIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASI 727
Query: 391 LRIIREGR 398
+ + EGR
Sbjct: 728 VTGVEEGR 735
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 37/248 (14%)
Query: 158 GYRVIALASRTLSIDDYKHLNYMKREDIE---KDLEFLGLIILENRLKPQTEGVIKELKD 214
G RV+ L + + +D+ +L F+GLI + + + + + +
Sbjct: 524 GERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRS 583
Query: 215 ARVKVVMITGDNIQTAISVAKECGIIDPG-ETVVDVSAVPGGLKECPKVYFTVSGVSAIQ 273
A +KV+M+TGD+ TA ++AK GII G ETV D++A ++ VS V+
Sbjct: 584 AGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAA---------RLNIPVSQVNPRD 634
Query: 274 TKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDXX 333
KA ++ S ++ +T + + I E+ +FAR S
Sbjct: 635 AKACVVHGSDLKD------------MTSEQLDDILKYHTEI---------VFARTSPQQK 673
Query: 334 XXXXXXXXXXGYYVAMCGDGANDCGALRAAHAGISLSEAESSVASPFTSTV---ANISCV 390
G VA+ GDG ND A + A G+++ A S V+ + N + +
Sbjct: 674 LIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASI 733
Query: 391 LRIIREGR 398
+ + EGR
Sbjct: 734 VTGVEEGR 741
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 38/217 (17%)
Query: 188 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPG-ETV 246
DL F+GL+ + + + + + + A +KV+M+TGD+ TA ++AK GII G ET+
Sbjct: 587 DLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETI 646
Query: 247 VDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWEL 306
D++A ++ + V+ KA ++ S
Sbjct: 647 EDIAA---------RLNIPIGQVNPRDAKACVVHGSD----------------------- 674
Query: 307 IRDQMPELIPRII--VKGAIFARMSSDXXXXXXXXXXXXGYYVAMCGDGANDCGALRAAH 364
++D E++ I+ +FAR S G VA+ GDG ND AL+ A
Sbjct: 675 LKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKAD 734
Query: 365 AGISLSEAESSVASPFTSTV---ANISCVLRIIREGR 398
G+++ + S V+ + N + ++ + EGR
Sbjct: 735 IGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGR 771
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 101/248 (40%), Gaps = 37/248 (14%)
Query: 158 GYRVIALASRTLSIDDYKHLNYMKREDIE---KDLEFLGLIILENRLKPQTEGVIKELKD 214
G RV+ LS DY E + L F GL+ + + + + + +
Sbjct: 559 GERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRT 618
Query: 215 ARVKVVMITGDNIQTAISVAKECGIIDPG-ETVVDVSAVPGGLKECPKVYFTVSGVSAIQ 273
A ++V+M+TGD+ TA ++A GII G ETV D++A ++ V V+
Sbjct: 619 AGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIAA---------RLRVPVDQVNRKD 669
Query: 274 TKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDXX 333
+A +N + ++ + E +R PE+ +FAR S
Sbjct: 670 ARACVINGMQLKD-----------MDPSELVEALRTH-PEM---------VFARTSPQQK 708
Query: 334 XXXXXXXXXXGYYVAMCGDGANDCGALRAAHAGISLSEAESSVASPFTSTV---ANISCV 390
G VA+ GDG ND AL+ A G+++ A S A + N + +
Sbjct: 709 LVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASI 768
Query: 391 LRIIREGR 398
+ + +GR
Sbjct: 769 VTGVEQGR 776
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 103/527 (19%), Positives = 187/527 (35%), Gaps = 122/527 (23%)
Query: 133 SGDYQSVLISVPENIV--------------SVLSEYTEQGYRVIALASRTLSIDDYKHLN 178
SG++ V PE I+ S++ +Y E+G R +A+A + +
Sbjct: 415 SGNWHRVSKGAPEQILELAKASNDLSKKVLSIIDKYAERGLRSLAVARQVVP-------- 466
Query: 179 YMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECG 238
+E EF+GL+ L + + + I+ + V V MITGD + ++ KE
Sbjct: 467 EKTKESPGAPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQL----AIGKE-- 520
Query: 239 IIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAY-KF 297
T LG+ + Y
Sbjct: 521 ---------------------------------------------TGRRLGMGTNMYPSS 535
Query: 298 AVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDXXXXXXXXXXXXGYYVAMCGDGANDC 357
A+ G + +P + +I K FA + + + V M GDG ND
Sbjct: 536 ALLGTHKDANLASIP--VEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDA 593
Query: 358 GALRAAHAGISLSEAESSV--ASPFTSTVANISCVLRIIREGRAAL------------VT 403
AL+ A GI++++A + AS T +S ++ + RA +T
Sbjct: 594 PALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSIT 653
Query: 404 SFGIFKFMVLYSLCEFFSTMILYTIDSNLTDFEFLYIDIALVVNFAFFFGRNHAFSGPLT 463
+F FM++ + EF + + I + L D + I ++ P
Sbjct: 654 IRIVFGFMLIALIWEFDFSAFMVLIIAILNDGTIMTIS------------KDRVKPSPTP 701
Query: 464 SETPLNSLFSYVTLLSMFFQLILMVSMQIISFIIVHKFAWFEPFVYTNAISYSCYE--NY 521
L +F+ +L + + M +I F HK +F +I + +E
Sbjct: 702 DSWKLKEIFATGVVLGGYQAI-----MTVIFFWAAHKTDFFSDTFGVRSIRDNNHELMGA 756
Query: 522 AVFSISMFQYIILAITFSQGKPY--RTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQF 579
+S+ ++ +T S+ + R F+++ +I T + +Y +F
Sbjct: 757 VYLQVSIISQALIFVTRSRSWSFVERPGALLMIAFLIAQLIATLIAVYANW-------EF 809
Query: 580 LQLRFPPNMQFPLIVIYLAICNFVLSLFIENFIIHYLLMIKFKRWSN 626
++R +I +Y + F L +F F I Y+L K W N
Sbjct: 810 AKIRGIGWGWAGVIWLYSIVTYFPLDVF--KFAIRYIL--SGKAWLN 852
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 167 RTLSIDDYKHLNYMKRED-----IEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVM 221
R L I + + +K++ I K+ E G+I L +R++P++ I +LK +K +M
Sbjct: 106 RELGIKTDESVEKLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMM 165
Query: 222 ITGDNIQTAISVAKECGIID 241
+TGDN A VA+E G+ D
Sbjct: 166 LTGDNRFVAKWVAEELGLDD 185
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 345 YYVAMCGDGANDCGALRAAHAGISLS 370
Y AM GDG ND AL A GI++
Sbjct: 206 YVTAMVGDGVNDAPALAQADVGIAIG 231
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 167 RTLSIDDYKHLNYMKRED-----IEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVM 221
R L I + + +K++ I K+ E G+I L +R++P++ I +LK +K +M
Sbjct: 106 RELGIKTDESVEKLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMM 165
Query: 222 ITGDNIQTAISVAKECGIID 241
+TGDN A VA+E G+ D
Sbjct: 166 LTGDNRFVAKWVAEELGLDD 185
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 345 YYVAMCGDGANDCGALRAAHAGISLS 370
Y AM GDG ND AL A GI++
Sbjct: 206 YVTAMVGDGVNDAPALAQADVGIAIG 231
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 188 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 239
D + + L+++E+ +K T I EL+ + +++VM+TGD+ +TA +VA GI
Sbjct: 542 DGKTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGI 593
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 344 GYYVAMCGDGANDCGALRAAHAGISLS 370
G VAM GDG ND AL A GI++
Sbjct: 616 GLIVAMAGDGVNDAPALAKADIGIAMG 642
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 193 GLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 239
G+I + + LK + ++ELK +KV MITGDN ++A ++++E +
Sbjct: 450 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL 496
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 193 GLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKE 236
G+I + + LK + ++ELK +KV MITGDN ++A ++++E
Sbjct: 528 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRE 571
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 344 GYYVAMCGDGANDCGALRAAHAGISLSEAESSVASPFTSTVANISCVLRIIREGRAALVT 403
GY VAM GDG ND +L+ A GI++ E S A V + II AL T
Sbjct: 626 GYLVAMTGDGVNDAPSLKKADTGIAV-EGSSDAARSAADIVFLAPGLGAIID----ALKT 680
Query: 404 SFGIFKFMVLY 414
S IF M Y
Sbjct: 681 SRQIFHRMYAY 691
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 193 GLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKE 236
G+I + + LK + ++ELK +KV MITGDN ++A ++++E
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRE 199
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 193 GLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKE 236
G+I + + LK + ++ELK +KV MITGDN ++A ++++E
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRE 199
>pdb|1B57|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase In Complex
With Phosphoglycolohydroxamate
pdb|1B57|B Chain B, Class Ii Fructose-1,6-Bisphosphate Aldolase In Complex
With Phosphoglycolohydroxamate
pdb|1GYN|A Chain A, Class Ii Fructose 1,6-Bisphosphate Aldolase With Cadmium
(Not Zinc) In The Active Site
pdb|1ZEN|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase
Length = 358
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 217 VKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPK------VYFTVSGVS 270
VK +ITGD++Q VAKE P V ++ L+ K V F+ G S
Sbjct: 7 VKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGAS 66
Query: 271 AIQTKAKKLNYSKTEEELGLSSGAY 295
I K K + + LG SGA+
Sbjct: 67 FIAGKGVKSDVPQGAAILGAISGAH 91
>pdb|1DOS|A Chain A, Structure Of Fructose-Bisphosphate Aldolase
pdb|1DOS|B Chain B, Structure Of Fructose-Bisphosphate Aldolase
Length = 358
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 217 VKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPK------VYFTVSGVS 270
VK +ITGD++Q VAKE P V ++ L+ K V F+ G S
Sbjct: 7 VKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGAS 66
Query: 271 AIQTKAKKLNYSKTEEELGLSSGAY 295
I K K + + LG SGA+
Sbjct: 67 FIAGKGVKSDVPQGAAILGAISGAH 91
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 350 CGDGANDCGALRAAHAGISL---SEAESSVASPFTSTVAN 386
CGDG ND L+AA G+++ SE SVA T TV N
Sbjct: 216 CGDGGNDIPMLKAAGIGVAMGNASEKVQSVADFVTDTVDN 255
>pdb|3V7Q|A Chain A, Crystal Structure Of B. Subtilis Ylxq At 1.55 A Resolution
pdb|3V7Q|B Chain B, Crystal Structure Of B. Subtilis Ylxq At 1.55 A Resolution
pdb|3V7Q|C Chain C, Crystal Structure Of B. Subtilis Ylxq At 1.55 A Resolution
Length = 101
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 189 LEFLGLIILENRLKPQTEG---VIKELKDARVKVVMITGD-NIQTAISVAKECGIIDPGE 244
+E+ L+ L NR + G VIKE+++AR K+V++T D + TA V +C
Sbjct: 5 MEWFPLLGLANRARKVVSGEDLVIKEIRNARAKLVLLTEDASSNTAKKVTDKCNYYKVPY 64
Query: 245 TVVDVSAVPG 254
V+ AV G
Sbjct: 65 KKVESRAVLG 74
>pdb|2B0C|A Chain A, The Crystal Structure Of The Putative Phosphatase From
Escherichia Coli
Length = 206
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 119 CHYELPIPAIVRPPSGDYQSVLISVPENIVSVLSEYTEQGYRVIALAS 166
CH E+ +P S +Q+V +++ +++++ + EQG+RV+ L++
Sbjct: 69 CH-EMALPLSYEQFSHGWQAVFVALRPEVIAIMHKLREQGHRVVVLSN 115
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 193 GLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 239
G+I + + LK + ++ELK +KV ITGDN ++A ++++E +
Sbjct: 136 GIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNL 182
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 200 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKE 236
+LK + ++ELK +KV ITGDN ++A ++++E
Sbjct: 22 KLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRE 58
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 24/81 (29%)
Query: 199 NRLKPQTEGVIKELKDARVKVVM---------ITGD-NIQTA-------ISVAKECGII- 240
N LK E VI EL++ V+VV I G N T+ I V +E +
Sbjct: 192 NTLKANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIVQEEASAVA 251
Query: 241 ------DPGETVVDVSAVPGG 255
PGETVVD++A PGG
Sbjct: 252 SIVLDPKPGETVVDLAAAPGG 272
>pdb|1MWK|A Chain A, Parm From Plasmid R1 Apo Form
pdb|1MWK|B Chain B, Parm From Plasmid R1 Apo Form
pdb|1MWM|A Chain A, Parm From Plasmid R1 Adp Form
pdb|1MWM|B Chain B, Parm From Plasmid R1 Adp Form
pdb|2QU4|A Chain A, Model For Bacterial Parm Filament
pdb|2ZGY|A Chain A, Parm With Gdp
pdb|2ZGY|B Chain B, Parm With Gdp
pdb|2ZGZ|A Chain A, Parm With Gmppnp
pdb|2ZGZ|B Chain B, Parm With Gmppnp
pdb|2ZHC|A Chain A, Parm Filament
pdb|3IKU|A Chain A, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|B Chain B, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|C Chain C, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|D Chain D, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|E Chain E, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|F Chain F, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|G Chain G, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|H Chain H, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|I Chain I, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|J Chain J, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|K Chain K, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|L Chain L, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKY|A Chain A, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|B Chain B, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|C Chain C, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|D Chain D, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|E Chain E, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|F Chain F, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|G Chain G, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|H Chain H, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|I Chain I, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|J Chain J, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|K Chain K, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|L Chain L, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|4A6J|A Chain A, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|B Chain B, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|C Chain C, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|D Chain D, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|E Chain E, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|F Chain F, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|G Chain G, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|H Chain H, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|I Chain I, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|J Chain J, Structural Model Of Parm Filament Based On Cryoem Map
Length = 320
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 19/95 (20%)
Query: 202 KPQTEGVIKELKDARVKVVMITGD------------NIQTAISVAKECG------IIDPG 243
+P TE + ++ + R K+ + GD +I V +E IID G
Sbjct: 113 QPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLG 172
Query: 244 ETVVDVSAVPGGLKECPKVYFTVS-GVSAIQTKAK 277
T +D+S V G L K+Y S GVS + + K
Sbjct: 173 GTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVK 207
>pdb|4A61|A Chain A, Parm From Plasmid R1 In Complex With Amppnp
Length = 326
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 19/95 (20%)
Query: 202 KPQTEGVIKELKDARVKVVMITGD------------NIQTAISVAKECG------IIDPG 243
+P TE + ++ + R K+ + GD +I V +E IID G
Sbjct: 119 QPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDERDSLLIIDLG 178
Query: 244 ETVVDVSAVPGGLKECPKVYFTVS-GVSAIQTKAK 277
T +D+S V G L K+Y S GVS + + K
Sbjct: 179 GTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVK 213
>pdb|4A62|A Chain A, Parm From R1 Plasmid In Complex With Peptide From C-
Terminus Of Parr
pdb|4A62|B Chain B, Parm From R1 Plasmid In Complex With Peptide From C-
Terminus Of Parr
Length = 320
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 19/95 (20%)
Query: 202 KPQTEGVIKELKDARVKVVMITGD------------NIQTAISVAKECG------IIDPG 243
+P TE + ++ + R K+ + GD +I V +E IID G
Sbjct: 113 QPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDEADSLLIIDLG 172
Query: 244 ETVVDVSAVPGGLKECPKVYFTVS-GVSAIQTKAK 277
T +D+S V G L K+Y S GVS + + K
Sbjct: 173 GTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVK 207
>pdb|1I5L|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I4K|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|O Chain O, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|P Chain P, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|Q Chain Q, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|R Chain R, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|S Chain S, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|T Chain T, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|U Chain U, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|V Chain V, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|W Chain W, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|X Chain X, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|Y Chain Y, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|Z Chain Z, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|1 Chain 1, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|2 Chain 2, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
Length = 77
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 214 DARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 255
D + +V++ + IQ V K ++ G+TVV VS PGG
Sbjct: 35 DIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAPGG 76
>pdb|2VFK|A Chain A, Akap18 Delta Central Domain - Amp
pdb|2VFL|A Chain A, Akap18 Delta Central Domain - Cmp
pdb|2VFY|A Chain A, Akap18 Delta Central Domain
Length = 205
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 31/152 (20%)
Query: 48 HYASVVPLQGKKLGAPIKHIQNT-----NEHVKLKHGMATCHSLTLINGELSGDPLDLKM 102
+Y +P+ KK+ A IK +QN+ N K G + H L+ L+ D +++
Sbjct: 4 NYFLSIPITNKKITAGIKVLQNSILRQDNRLTKAMVGDGSFHITLLVMQLLNEDEVNI-- 61
Query: 103 FESTGWTLE-EP---NLKEDCHYELPIPAI---------VRPPSGDYQSVLISVPENIVS 149
T LE +P + E H LP I V+ GD+ S L+ + E +
Sbjct: 62 --GTDALLELKPFVEEILEGKHLTLPFHGIGTFQGQVGFVKLADGDHVSALLEIAE---T 116
Query: 150 VLSEYTEQGYRVIALASRTLSIDDYKHLNYMK 181
+ E+G ++A SRT HL +MK
Sbjct: 117 AKRTFQEKG--ILAGESRTFK----PHLTFMK 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,815,281
Number of Sequences: 62578
Number of extensions: 757508
Number of successful extensions: 1562
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1515
Number of HSP's gapped (non-prelim): 55
length of query: 674
length of database: 14,973,337
effective HSP length: 105
effective length of query: 569
effective length of database: 8,402,647
effective search space: 4781106143
effective search space used: 4781106143
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)