RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6090
(674 letters)
>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
(type V). These P-type ATPases form a distinct clade but
the substrate of their pumping activity has yet to be
determined. This clade has been designated type V in.
Length = 1054
Score = 492 bits (1268), Expect = e-161
Identities = 227/572 (39%), Positives = 318/572 (55%), Gaps = 51/572 (8%)
Query: 69 NTNEHVKLKHGMATCHSLTLINGELSGDPLDLKMFESTGWTLEEPNLKEDCHYELPIPAI 128
+ K +ATCHSLT + G+L GDPLD KMFE+TGWTLEE + + L +
Sbjct: 489 KPSITHKA---LATCHSLTKLEGKLVGDPLDKKMFEATGWTLEEDDESAEPTSILAVVRT 545
Query: 129 VRPP-----------SGDYQ--SVLIS--------------------------VPENIVS 149
PP S Q SV++S VP +
Sbjct: 546 DDPPQELSIIRRFQFSSALQRMSVIVSTNDERSPDAFVKGAPETIQSLCSPETVPSDYQE 605
Query: 150 VLSEYTEQGYRVIALASRTLSIDDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVI 209
VL YT +GYRV+ALA + L + + R+ +E +L FLG I+ EN LKP T+ VI
Sbjct: 606 VLKSYTREGYRVLALAYKELPKLTLQKAQDLSRDAVESNLTFLGFIVFENPLKPDTKEVI 665
Query: 210 KELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTV-SG 268
KELK A ++ VMITGDN TA+ VA+ECGI++P T++ A P + ++ F V
Sbjct: 666 KELKRASIRTVMITGDNPLTAVHVARECGIVNPSNTLILAEAEPPESGKPNQIKFEVIDS 725
Query: 269 VSAIQTKAKK--LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFA 326
+ T+ + + E+L S Y A++GK++ +++ PEL+ R++ +FA
Sbjct: 726 IPFASTQVEIPYPLGQDSVEDLLASR--YHLAMSGKAFAVLQAHSPELLLRLLSHTTVFA 783
Query: 327 RMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESSVASPFTSTVAN 386
RM+ DQK+ LV LQ+L Y V MCGDGANDCGAL+ A GISLSEAE+SVA+PFTS +A+
Sbjct: 784 RMAPDQKETLVELLQKLDYTVGMCGDGANDCGALKQADVGISLSEAEASVAAPFTSKLAS 843
Query: 387 ISCVLRIIREGRAALVTSFGIFKFMVLYSLCEFFSTMILYTIDSNLTDFEFLYIDIALVV 446
ISCV +IREGR ALVTSF +FK+M LYSL +F+S ILY I SNL D +FL ID+ L+
Sbjct: 844 ISCVPNVIREGRCALVTSFQMFKYMALYSLIQFYSVSILYLIGSNLGDGQFLTIDLLLIF 903
Query: 447 NFAFFFGRNHAFSGPLTSETPLNSLFSYVTLLSMFFQLILMVSMQIISFIIVHKFAWFEP 506
A RN L+ E P ++LFS L S+ Q +L + Q+ +H W++P
Sbjct: 904 PVALLMSRNKPLK-KLSKERPPSNLFSVYILTSVLIQFVLHILSQVYLVFELHAQPWYKP 962
Query: 507 --FVYTNAISYSCYENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWV 564
V ++ N +F +S FQY+I AI S+G P+R PIYKNK F+ +I +
Sbjct: 963 ENPVDLEKENFPNLLNTVLFFVSSFQYLITAIVNSKGPPFREPIYKNKPFVYLLITGLGL 1022
Query: 565 CIYITLIPSEFIIQFLQL-RFPPNMQFPLIVI 595
+ + L P + + LQ+ P + L+V
Sbjct: 1023 LLVLLLDPHPLLGKILQIVPLPQEFRSKLLVW 1054
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 241 bits (617), Expect = 8e-69
Identities = 118/593 (19%), Positives = 226/593 (38%), Gaps = 118/593 (19%)
Query: 80 MATCHSLTL--INGELSGDPLDLKMFESTGWTLEEPNLKE-----DCHYELP-------I 125
A C+S+T +GDP + + E +L E+P +
Sbjct: 396 AALCNSVTPEKNGWYQAGDPTEGALVEFAEKLGFSLDLSGLEVEYPILAEIPFDSERKRM 455
Query: 126 PAIVRPPSGDY-------QSVLISV--------------PENIVSVLSEYTEQGYRVIAL 164
IV+ G Y V++ + + E +G RV+A+
Sbjct: 456 SVIVKTDEGKYILFVKGAPEVILERCKSIGELEPLTEEGLRTLEEAVKELASEGLRVLAV 515
Query: 165 ASRTLSIDDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITG 224
A + L + ++IE DL FLGL +E+ + + I+EL++A +KV MITG
Sbjct: 516 AYKKLDRAEKDDEV----DEIESDLVFLGLTGIEDPPREDVKEAIEELREAGIKVWMITG 571
Query: 225 DNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKT 284
D+++TAI++AKECGI E+ +
Sbjct: 572 DHVETAIAIAKECGIEAEAESAL------------------------------------- 594
Query: 285 EEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLG 344
+ G + + D E + ++ + ++FAR+S +QK ++V LQ+ G
Sbjct: 595 -------------VIDGAELDALSD---EELAELVEELSVFARVSPEQKARIVEALQKSG 638
Query: 345 YYVAMCGDGANDCGALRAAHAGISLSEAESSV---ASPFTSTVANISCVLRIIREGRAAL 401
+ VAM GDG ND AL+AA GI++ + A+ N + ++ + EGR
Sbjct: 639 HVVAMTGDGVNDAPALKAADVGIAMGGEGTDAAKEAADIVLLDDNFATIVLAVVEGRRVY 698
Query: 402 VTSFGIFKFMVLYSLCEFFSTMILYTIDSN---LTDFEFLYIDIALVVNFAFFFGRNHAF 458
V +++ ++ E + +I + LT + L+I++ A G
Sbjct: 699 VNIKKFILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPE 758
Query: 459 SGPLTSET--PLNSLFSYVTLLS-MFFQLILMVSMQIISFIIVHKFAWFEPFVYTNAISY 515
S + P LF+ + +L + I++F++ +
Sbjct: 759 SDVMKRPPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQAL 818
Query: 516 SCYENYAVFSISMFQYIILAITFSQGKP-YRTPIYKNKLFILSIIIMTWVCIYITLIPSE 574
+ A + + Q ++ S+G+P + ++ NK L+++++ + + I +P
Sbjct: 819 L--QTTAFTVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPL 876
Query: 575 FIIQFLQLRFPPNMQFPLIVIYLAICNFVLSLFIENFIIHYLLMIKFKRWSND 627
+ F PL + I V L + Y+++ + + +
Sbjct: 877 NLKIFQPT--------PLSLFEWLIAIAVALLLL------YIVVSELYKLKSR 915
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD
superfamily, subfamily IC. The P-type ATPases are a
large family of trans-membrane transporters acting on
charged substances. The distinguishing feature of the
family is the formation of a phosphorylated intermediate
(aspartyl-phosphate) during the course of the reaction.
Another common name for these enzymes is the E1-E2
ATPases based on the two isolable conformations: E1
(unphosphorylated) and E2 (phosphorylated). Generally,
P-type ATPases consist of only a single subunit
encompassing the ATPase and ion translocation pathway,
however, in the case of the potassium (TIGR01497) and
sodium/potassium (TIGR01106) varieties, these functions
are split between two subunits. Additional small
regulatory or stabilizing subunits may also exist in
some forms. P-type ATPases are nearly ubiquitous in life
and are found in numerous copies in higher organisms (at
least 45 in Arabidopsis thaliana, for instance ).
Phylogenetic analyses have revealed that the P-type
ATPase subfamily is divided up into groups based on
substrate specificities and this is represented in the
various subfamily and equivalog models that have been
made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525,
IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++)
TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+,
H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and
K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++)
TIGR01524, IV (phospholipid, flippase) TIGR01652 and V
(unknown specificity) TIGR01657. The crystal structure
of one calcium-pumping ATPase and an analysis of the
fold of the catalytic domain of the P-type ATPases have
been published. These reveal that the catalytic core of
these enzymes is a haloacid dehalogenase(HAD)-type
aspartate-nucleophile hydrolase. The location of the
ATP-binding loop in between the first and second HAD
conserved catalytic motifs defines these enzymes as
members of subfamily I of the HAD superfamily (see also
TIGR01493, TIGR01509, TIGR01549, TIGR01544 and
TIGR01545). Based on these classifications, the P-type
ATPase _superfamily_ corresponds to the IC subfamily of
the HAD superfamily.
Length = 543
Score = 110 bits (278), Expect = 2e-25
Identities = 56/180 (31%), Positives = 80/180 (44%), Gaps = 32/180 (17%)
Query: 77 KHGMATCHSLTLINGELSGDPLDLKMFESTGWTLEEPNLKEDCHYELPIP---------A 127
+ + N LSGDP++ + +S + ++ P
Sbjct: 266 GKEDNSSSLVACDNNYLSGDPMEKALLKSAELVGKADKGNKEYKILDVFPFSSVLKRMSV 325
Query: 128 IVRPPSGDYQSVLISVPENIVSVLS-------EYTEQGYRVIALASRTLSIDDYKHLNYM 180
IV P G + PE I+ + E QG RV+A AS+
Sbjct: 326 IVETPDGSDLLFVKGAPEFILERCNNYEEKYLELARQGLRVLAFASK------------- 372
Query: 181 KREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII 240
++E DLEFLGLI E+ L+P + I+ELK A +KVVMITGDN+ TA ++AKE GI
Sbjct: 373 ---ELEDDLEFLGLITFEDPLRPDAKETIEELKAAGIKVVMITGDNVLTAKAIAKELGID 429
Score = 97.0 bits (242), Expect = 4e-21
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 324 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESSVASPFTST 383
+FAR+S +QK Q+V LQ+ G+ VAM GDG ND AL+ A GI++ A+++
Sbjct: 430 VFARVSPEQKLQIVEALQKKGHIVAMTGDGVNDAPALKKADVGIAMG-AKAAADIVLLDD 488
Query: 384 VANISCVLRIIREGRAALVTSFGIFKFMVLYSLCEFFSTMILYTIDSNLTDF 435
++S +++ ++EGR + + Y+L ++L I L
Sbjct: 489 --DLSAIVKAVKEGRKIFSNIKSNIFWAIAYNLILIPLALLLIVIILLLPML 538
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum
calcium-translocating P-type ATPase. This model
describes the P-type ATPase responsible for
translocating calcium ions across the endoplasmic
reticulum membrane of eukaryotes , and is of particular
importance in the sarcoplasmic reticulum of skeletal and
cardiac muscle in vertebrates. These pumps transfer Ca2+
from the cytoplasm to the lumen of the endoplasmic
reticulum. In humans and mice, at least, there are
multiple isoforms of the SERCA pump with overlapping but
not redundant functions. Defects in SERCA isoforms are
associated with diseases in humans. The calcium P-type
ATPases have been characterized as Type IIA based on a
phylogenetic analysis which distinguishes this group
from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the latter of which is
modelled by TIGR01522 [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 917
Score = 94.5 bits (235), Expect = 6e-20
Identities = 76/299 (25%), Positives = 120/299 (40%), Gaps = 80/299 (26%)
Query: 143 VPENIVSVLSEY-TEQGYRVIALASR-TLSIDDYKHL----NYMKREDIEKDLEFLGLII 196
+ I+SV+ E T + R +ALA + + L N+ IE DL F+G++
Sbjct: 477 MKNTILSVIKEMGTTKALRCLALAFKDIPDPREEDLLSDPANFEA---IESDLTFIGVVG 533
Query: 197 LENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGL 256
+ + +P+ I++ + A ++V+MITGDN +TA ++ + GI P E V S
Sbjct: 534 MLDPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDEDVTFKS------ 587
Query: 257 KECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIP 316
TG+ + D+M
Sbjct: 588 ------------------------------------------FTGREF----DEMGPAKQ 601
Query: 317 RIIVKGA-IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSE--AE 373
R + A +F+R+ K +LV LQ+ G VAM GDG ND AL+ A GI++
Sbjct: 602 RAACRSAVLFSRVEPSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAMGSGTEV 661
Query: 374 SSVASPFTSTVANISCVLRIIREGRAALVTSFGIFKFMVLYSLCEFFSTMILYTIDSNL 432
+ AS N + ++ + EGRA I+ M I Y I SN+
Sbjct: 662 AKEASDMVLADDNFATIVAAVEEGRA-------IYNNM---------KQFIRYMISSNI 704
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 82.8 bits (205), Expect = 3e-16
Identities = 109/560 (19%), Positives = 195/560 (34%), Gaps = 108/560 (19%)
Query: 127 AIVRPPSGDYQ-----------SVLISVPENIVSVLSEYTEQ----GYRVIALASRTLSI 171
IVR P G + L S + E+ E G R + +A R LS
Sbjct: 526 VIVRNPDGRIKLLCKGADTVIFKRLSSGGNQVNEETKEHLENYASEGLRTLCIAYRELSE 585
Query: 172 DDYK--HLNY------MKRED---------IEKDLEFLGLIILENRLKPQTEGV---IKE 211
++Y+ + Y + + IEKDL LG +E++L+ EGV I+
Sbjct: 586 EEYEEWNEEYNEASTALTDREEKLDVVAESIEKDLILLGATAIEDKLQ---EGVPETIEL 642
Query: 212 LKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSA 271
L+ A +K+ ++TGD ++TAI++ C ++ + +++ L V
Sbjct: 643 LRQAGIKIWVLTGDKVETAINIGYSCRLLSRNMEQIVITS--DSLDATRSVE-------- 692
Query: 272 IQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPE---LIPRIIVKGAIFARM 328
L + E SG + GKS D+ E L + K I R+
Sbjct: 693 -AAIKFGLEGTSEEFNNLGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRV 751
Query: 329 SSDQKQQLVLELQQ-LGYYVAMCGDGANDCGALRAAHAGISLSEAE---SSVASPFTSTV 384
S QK +V +++ G GDGAND ++ A G+ +S E + +AS F +
Sbjct: 752 SPSQKADVVRLVKKSTGKTTLAIGDGANDVSMIQEADVGVGISGKEGMQAVMASDF--AI 809
Query: 385 ANISCVLRII------REGRAALVTSFGIFKFMVL------YSLCEFFSTMILYTIDSNL 432
+ +++ R + + + +K ++ YS FS LY +
Sbjct: 810 GQFRFLTKLLLVHGRWSYKRISKMILYFFYKNLIFAIIQFWYSFYNGFSGQTLYE-GWYM 868
Query: 433 TDFEFLYIDIALVVNFAF--FFGRNHAFSGP-LTSETPLNSLFSY----VTLLSMFFQ-- 483
+ + + ++ F + + P L E FS +L +Q
Sbjct: 869 VLYNVFFTALPVISLGVFDQDVSASLSLRYPQLYREGQKGQGFSTKTFWGWMLDGIYQSL 928
Query: 484 LILMVSMQIISFIIVHKFAWFEPFVYTNAISYSCYENYAVFS----ISMFQYIILAITFS 539
+I M + F I ++ V I++ I+
Sbjct: 929 VIFFFPMFAYILGDFVSSGSVDDFSSVGVIVFTA----LVVIVNLKIALEINRWNWISL- 983
Query: 540 QGKPYRTPIYKNKLFILSIIIMTWVC--IYITLIPS-EFIIQFLQLRFPPNMQFPLIVIY 596
+ I I++ + +Y ++ PS F ++ L+VI
Sbjct: 984 -------------ITIWGSILVWLIFVIVYSSIFPSPAFYKAAPRVMGTFGFWLVLLVI- 1029
Query: 597 LAICNFVLSLFIENFIIHYL 616
+ I +L F I
Sbjct: 1030 VLIS--LLPRFTYKAIQRLF 1047
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
golgi membrane of fungi and animals , and is of
particular importance in the sarcoplasmic reticulum of
skeletal and cardiac muscle in vertebrates. The calcium
P-type ATPases have been characterized as Type IIA based
on a phylogenetic analysis which distinguishes this
group from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the former of which is
modelled by TIGR01116.
Length = 884
Score = 81.0 bits (200), Expect = 9e-16
Identities = 67/267 (25%), Positives = 108/267 (40%), Gaps = 81/267 (30%)
Query: 145 ENIVSVLSEYTEQGYRVIALASRTLSIDDYKHLNYMKREDIEKDLEFLGLIILENRLKPQ 204
+ I +E G RVIA AS L FLGL+ + + +P
Sbjct: 489 DVIQEEAAEMASAGLRVIAFASGPEK----------------GQLTFLGLVGINDPPRPG 532
Query: 205 TEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYF 264
+ + L V+++MITGD+ +TA+S+A+ G+
Sbjct: 533 VKEAVTTLITGGVRIIMITGDSQETAVSIARRLGM------------------------- 567
Query: 265 TVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAI 324
SKT + SG K + Q+ +++P++ A+
Sbjct: 568 ----------------PSKTSQS---VSGE-------KLDAMDDQQLSQIVPKV----AV 597
Query: 325 FARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESSV---ASPFT 381
FAR S + K ++V LQ+ G VAM GDG ND AL+ A G+++ + + V A+
Sbjct: 598 FARASPEHKMKIVKALQKRGDVVAMTGDGVNDAPALKLADIGVAMGQTGTDVAKEAADMI 657
Query: 382 STVANISCVLRIIREGRAALVTSFGIF 408
T + + +L I EG+ GIF
Sbjct: 658 LTDDDFATILSAIEEGK-------GIF 677
>gnl|CDD|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type
ATPase, fungal-type. Initially described as a calcium
efflux ATPase , more recent work has shown that the S.
pombe CTA3 gene is in fact a potassium ion efflux pump.
This model describes the clade of fungal P-type ATPases
responsible for potassium and sodium efflux. The degree
to which these pumps show preference for sodium or
potassium varies. This group of ATPases has been
classified by phylogentic analysis as type IID. The
Leishmania sequence (GP|3192903), which falls between
trusted and noise in this model, may very well turn out
to be an active potassium pump.
Length = 1053
Score = 80.8 bits (199), Expect = 1e-15
Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 52/261 (19%)
Query: 145 ENIVSVLSEYTEQGYRVIALASRTLSIDDYKHLNY----MKREDIEKDLEFLGLIILENR 200
E I++ + +G RV+A AS++ D + R E DLEFLGLI + +
Sbjct: 587 ELIIANMESLAAEGLRVLAFASKSFDKADNNDDQLKNETLNRATAESDLEFLGLIGIYDP 646
Query: 201 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECP 260
+ ++ G +++ A + V M+TGD +TA ++A+E GII P
Sbjct: 647 PRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNF---------------- 690
Query: 261 KVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIV 320
+E + +TG ++ + D+ + + + +
Sbjct: 691 --------------------IHDRDEIMD------SMVMTGSQFDALSDEEVDDLKALCL 724
Query: 321 KGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESSV---A 377
+ AR + K +++ L + + AM GDG ND +L+ A+ GI++ S V A
Sbjct: 725 ---VIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAMGINGSDVAKDA 781
Query: 378 SPFTSTVANISCVLRIIREGR 398
S + N + +L I EGR
Sbjct: 782 SDIVLSDDNFASILNAIEEGR 802
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
plasma membrane of eukaryotes , out of the cell. In some
organisms, this type of pump may also be found in
vacuolar membranes. In humans and mice, at least, there
are multiple isoforms of the PMCA pump with overlapping
but not redundant functions. Accordingly, there are no
human diseases linked to PMCA defects, although
alterations of PMCA function do elicit physiological
effects. The calcium P-type ATPases have been
characterized as Type IIB based on a phylogenetic
analysis which distinguishes this group from the Type
IIA SERCA calcium pump. A separate analysis divides Type
IIA into sub-types (SERCA and PMR1) which are modelled
by TIGR01116 and TIGR01522. This model is well separated
from those.
Length = 944
Score = 77.5 bits (191), Expect = 1e-14
Identities = 95/461 (20%), Positives = 179/461 (38%), Gaps = 120/461 (26%)
Query: 150 VLSEYTEQGYRVIALASRTLSIDDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVI 209
V+ R I LA R + +++ +++ K L +G++ +++ L+P +
Sbjct: 537 VIEPLASDALRTICLAYRDFAPEEFP-----RKDYPNKGLTLIGVVGIKDPLRPGVREAV 591
Query: 210 KELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGV 269
+E + A + V M+TGDNI TA ++A+ CGI+ G
Sbjct: 592 QECQRAGITVRMVTGDNIDTAKAIARNCGILTF-------------------------GG 626
Query: 270 SAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMS 329
A++ K +F L+ ++M ++P++ V AR S
Sbjct: 627 LAMEGK--------------------EFR------SLVYEEMDPILPKLRV----LARSS 656
Query: 330 SDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESSVA---SPFTSTVAN 386
KQ LVL L+ +G VA+ GDG ND AL+ A G S+ + + VA S N
Sbjct: 657 PLDKQLLVLMLKDMGEVVAVTGDGTNDAPALKLADVGFSMGISGTEVAKEASDIILLDDN 716
Query: 387 ISCVLRIIREGRAALVTSFGIFKFM-------VLYSLCEFFSTMILYTIDSNLTDFEFLY 439
+ ++R ++ GR I KF+ V+ + F + I + S LT + L+
Sbjct: 717 FASIVRAVKWGRNVYDN---IRKFLQFQLTVNVVAVILTFVGSCI--SSTSPLTAVQLLW 771
Query: 440 IDIALVVNFAFFFGRNHAFSGPLTSETPLNSLF---------SYVTLLSMFFQLILMVSM 490
+++ + A L +E P +L ++ SM+ ++
Sbjct: 772 VNLIMDTLAAL----------ALATEPPTEALLDRKPIGRNAPLIS-RSMWKNILGQAGY 820
Query: 491 QIISFIIVHKFA--WFEPFVYTNAISYSCYENYA-VFSISMFQYI--------ILAITFS 539
Q++ I+ F+ S+ E VF+ + + +
Sbjct: 821 QLVVTFILLFAGGSIFDVSGPDEITSHQQGELNTIVFNTFVLLQLFNEINARKLYERNVF 880
Query: 540 QGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFL 580
+G ++KN++F+ +I+ T+ I++F
Sbjct: 881 EG------LFKNRIFV-TIMGFTFGF-------QVIIVEFG 907
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
This model describes the magnesium translocating P-type
ATPase found in a limited number of bacterial species
and best described in Salmonella typhimurium, which
contains two isoforms. These transporters are active in
low external Mg2+ concentrations and pump the ion into
the cytoplasm. The magnesium ATPases have been
classified as type IIIB by a phylogenetic analysis
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 867
Score = 70.7 bits (173), Expect = 2e-12
Identities = 56/228 (24%), Positives = 91/228 (39%), Gaps = 62/228 (27%)
Query: 145 ENIVSVLSEYTEQGYRVIALASRTLSIDDYKHLNYMKREDIEKDLEFLGLIILENRLKPQ 204
+ + +E QG RVIA+A++TL + + + D E+ L G + + K
Sbjct: 465 SELQDMTAEMNRQGIRVIAVATKTLKVGE----ADFTKTD-EEQLIIEGFLGFLDPPKES 519
Query: 205 TEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYF 264
T+ I L + V ++TGDN I A+ C
Sbjct: 520 TKEAIAALFKNGINVKVLTGDN---EIVTARIC--------------------------- 549
Query: 265 TVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAI 324
+E+G+ + + + G E + D E + R + K I
Sbjct: 550 ---------------------QEVGIDANDF---LLGADIEELSD---EELARELRKYHI 582
Query: 325 FARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEA 372
FAR++ QK +++ L++ G+ V GDG ND ALR A GIS+ A
Sbjct: 583 FARLTPMQKSRIIGLLKKAGHTVGFLGDGINDAPALRKADVGISVDTA 630
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
uptake antiporter, P-type ATPase, alpha subunit. This
model describes the P-type ATPases responsible for the
exchange of either protons or sodium ions for potassium
ions across the plasma membranes of eukaryotes. Unlike
most other P-type ATPases, members of this subfamily
require a beta subunit for activity. This model
encompasses eukaryotes and consists of two functional
types, a Na/K antiporter found widely distributed in
eukaryotes and a H/K antiporter found only in
vertebrates. The Na+ or H+/K+ antiporter P-type ATPases
have been characterized as Type IIC based on a published
phylogenetic analysis. Sequences from Blastocladiella
emersonii (GP|6636502, GP|6636502 and PIR|T43025), C.
elegans (GP|2315419, GP|6671808 and PIR|T31763) and
Drosophila melanogaster (GP|7291424) score below trusted
cutoff, apparently due to long branch length (excessive
divergence from the last common ancestor) as evidenced
by a phylogenetic tree. Experimental evidence is needed
to determine whether these sequences represent ATPases
with conserved function. Aside from fragments, other
sequences between trusted and noise appear to be
bacterial ATPases of unclear lineage, but most likely
calcium pumps [Energy metabolism, ATP-proton motive
force interconversion].
Length = 997
Score = 69.4 bits (170), Expect = 4e-12
Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 42/228 (18%)
Query: 158 GYRVIALASRTLSIDDYKHLNYMKREDIE---KDLEFLGLIILENRLKPQTEGVIKELKD 214
G RV+ L + + +D+ +L F+GLI + + + + + +
Sbjct: 523 GERVLGFCHLYLPDEQFPEGFQFDTDDVNFPTDNLCFVGLISMIDPPRAAVPDAVGKCRS 582
Query: 215 ARVKVVMITGDNIQTAISVAKECGIIDPG-ETVVDVSAVPGGLKECPKVYFTVSGVSAIQ 273
A +KV+M+TGD+ TA ++AK GII G ETV D++A ++ VS V+
Sbjct: 583 AGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAA---------RLNIPVSQVNPRD 633
Query: 274 TKAKKLNYSK----TEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMS 329
KA ++ S T E+L E+++ E++ FAR S
Sbjct: 634 AKACVVHGSDLKDMTSEQLD---------------EILKYH-TEIV---------FARTS 668
Query: 330 SDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESSVA 377
QK +V Q+ G VA+ GDG ND AL+ A G+++ A S V+
Sbjct: 669 PQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVS 716
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type
ATPase. This model describes the plasma membrane proton
efflux P-type ATPase found in plants, fungi, protozoa,
slime molds and archaea. The best studied representative
is from yeast.
Length = 754
Score = 68.1 bits (167), Expect = 7e-12
Identities = 83/375 (22%), Positives = 132/375 (35%), Gaps = 94/375 (25%)
Query: 143 VPENIVSVLSEYTEQGYRVIALASRTLSIDDYKHLNYMKREDIEKDLEFLGLIILENRLK 202
+ E + + E +GYR + +A R D E FLGL+ L + +
Sbjct: 401 IEEKVEEKVDELASRGYRALGVA----------------RTDEEGRWHFLGLLPLFDPPR 444
Query: 203 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKV 262
T+ I+ + V+V M+TGD AI AKE
Sbjct: 445 HDTKETIERARHLGVEVKMVTGD--HLAI--AKE-------------------------- 474
Query: 263 YFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKG 322
T LGL + Y V K RD +P + ++
Sbjct: 475 ---------------------TARRLGLGTNIYTADVLLKG--DNRDDLPSGLGEMVEDA 511
Query: 323 AIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESSV--ASPF 380
FA + + K ++V LQ+ G+ V M GDG ND AL+ A GI+++ A + A+
Sbjct: 512 DGFAEVFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAVAGATDAARSAADI 571
Query: 381 TSTVANISCVLRIIREGRA--ALVTSFGIFKFMVLYSLCEFFSTMILYTIDSNLTDFEFL 438
T +S ++ I E R + S+ I++ + FF +IL F
Sbjct: 572 VLTEPGLSVIVDAILESRKIFQRMKSYVIYRIAETIRIVFFFGLLILI--------LNF- 622
Query: 439 YIDIALVVNFAFF-------FGRNHAFSGPLTSETPLNSLFSYVTLLSMFFQLILMVSMQ 491
Y +VV A ++ L L +F+ T+L I +V
Sbjct: 623 YFPPIMVVIIAILNDGTIMTIAYDNVKPSKLPQRWNLREVFTMSTVLG-----IYLVIST 677
Query: 492 IISFIIVHKFAWFEP 506
+ I +F
Sbjct: 678 FLLLAIALDTTFFID 692
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.
Length = 903
Score = 63.1 bits (154), Expect = 3e-10
Identities = 51/216 (23%), Positives = 79/216 (36%), Gaps = 60/216 (27%)
Query: 153 EYTEQGYRVIALASRTLSIDDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKEL 212
Y G+RV+ +A+R + + + E+DL G + + K I L
Sbjct: 506 AYNADGFRVLLVATREIPGGESRAQ---YSTADERDLVIRGFLTFLDPPKESAAPAIAAL 562
Query: 213 KDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAI 272
++ V V ++TGDN I AK C
Sbjct: 563 RENGVAVKVLTGDN---PIVTAKIC----------------------------------- 584
Query: 273 QTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQ 332
E+GL G + G E + D + R + + +FA+++ Q
Sbjct: 585 -------------REVGLEPGE---PLLGTEIEAMDD---AALAREVEERTVFAKLTPLQ 625
Query: 333 KQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGIS 368
K +++ LQ G+ V GDG ND ALR A GIS
Sbjct: 626 KSRVLKALQANGHTVGFLGDGINDAPALRDADVGIS 661
>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA;
Provisional.
Length = 902
Score = 61.2 bits (149), Expect = 1e-09
Identities = 60/228 (26%), Positives = 90/228 (39%), Gaps = 62/228 (27%)
Query: 145 ENIVSVLSEYTEQGYRVIALASRTLSIDDYKHLNYMKREDIEKDLEFLGLIILENRLKPQ 204
I V QG RV+A+A++ L + +Y +R D E DL G I + K
Sbjct: 500 RRIKRVTDTLNRQGLRVVAVATKYLPAREG---DY-QRAD-ESDLILEGYIAFLDPPKET 554
Query: 205 TEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYF 264
T +K LK + V V ++TGD+ A AK C
Sbjct: 555 TAPALKALKASGVTVKILTGDSELVA---AKVCH-------------------------- 585
Query: 265 TVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAI 324
E+GL +G + G E + D + + + +
Sbjct: 586 ----------------------EVGLDAGEV---LIGSDIETLSDDE---LANLAERTTL 617
Query: 325 FARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEA 372
FAR++ K+++V L++ G+ V GDG ND ALRAA GIS+ A
Sbjct: 618 FARLTPMHKERIVTLLKREGHVVGFMGDGINDAPALRAADIGISVDGA 665
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 713
Score = 59.5 bits (145), Expect = 4e-09
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 185 IEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID 241
+ D + +G+I L + L+P + I LK +KVVM+TGDN +TA ++AKE GI +
Sbjct: 522 VAVDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDE 578
Score = 53.4 bits (129), Expect = 3e-07
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 324 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESSVASPFTST 383
+ A + + K ++V ELQ G VAM GDG ND AL AA GI++ + VA +
Sbjct: 579 VRAELLPEDKAEIVRELQAEGRKVAMVGDGINDAPALAAADVGIAMGSG-TDVAIE-AAD 636
Query: 384 VA----NISCVLRIIREGRAAL 401
V ++S V I RA
Sbjct: 637 VVLMRDDLSAVPEAIDLSRATR 658
>gnl|CDD|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type
ATPase. This model describes the P-type ATPase
primarily responsible for translocating copper ions
accross biological membranes. These transporters are
found in prokaryotes and eukaryotes. This model
encompasses those species which pump copper ions out of
cells or organelles (efflux pumps such as CopA of
Escherichia coli ) as well as those which pump the ion
into cells or organelles either for the purpose of
supporting life in extremely low-copper environments
(for example CopA of Enterococcus hirae ) or for the
specific delivery of copper to a biological complex for
which it is a necessary component (for example FixI of
Bradyrhizobium japonicum, or CtaA and PacS of
Synechocystis). The substrate specificity of these
transporters may, to a varying degree, include silver
ions (for example, CopA from Archaeoglobus fulgidus).
Copper transporters from this family are well known as
the genes which are mutated in two human disorders of
copper metabolism, Wilson's and Menkes' diseases. The
sequences contributing to the seed of this model are all
experimentally characterized. The copper P-type ATPases
have been characterized as Type IB based on a
phylogenetic analysis which combines the
copper-translocating ATPases with the
cadmium-translocating species. This model and that
describing the cadmium-ATPases (TIGR01512) are well
separated, and thus we further type the copper-ATPases
as IB1 (and the cadmium-ATPases as IB2). Several
sequences which have not been characterized
experimentally fall just below the cutoffs for both of
these models. A sequence from Enterococcus faecalis
scores very high against this model, but yet is
annotated as an "H+/K+ exchanging ATPase". BLAST of this
sequence does not hit anything else annotated in this
way. This error may come from the characterization paper
published in 1987. Accession GP|7415611 from
Saccharomyces cerevisiae appears to be mis-annotated as
a cadmium resistance protein. Accession
OMNI|NTL01HS00542 from Halobacterium which scores above
trusted for this model is annotated as
"molybdenum-binding protein" although no evidence can be
found for this classification [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 572
Score = 53.8 bits (130), Expect = 2e-07
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 324 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESSVA 377
+ A + D K L+ +LQ+ G VAM GDG ND AL A GI++ + VA
Sbjct: 456 VRAEVLPDDKAALIKKLQEKGKVVAMVGDGINDAPALAQADVGIAIGAG-TDVA 508
Score = 50.3 bits (121), Expect = 3e-06
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 186 EKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 239
+ E G++ L ++LKP+ + VI+ LK ++ VM+TGDN +TA +VAKE GI
Sbjct: 400 AVNGELAGVLALADQLKPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGI 453
>gnl|CDD|216069 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase. This
family is structurally different from the alpha/beta
hydrolase family (pfam00561). This family includes
L-2-haloacid dehalogenase, epoxide hydrolases and
phosphatases. The structure of the family consists of
two domains. One is an inserted four helix bundle, which
is the least well conserved region of the alignment,
between residues 16 and 96 of Pseudomonas sp.
(S)-2-haloacid dehalogenase 1. The rest of the fold is
composed of the core alpha/beta domain. Those members
with the characteristic DxD triad at the N-terminus are
probably phosphatidylglycerolphosphate (PGP)
phosphatases involved in cardiolipin biosynthesis in the
mitochondria.
Length = 187
Score = 50.7 bits (121), Expect = 3e-07
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 12/127 (9%)
Query: 161 VIALASRTLSIDDYKHLNYMKREDIEK--DLEFLGLIILENRLKPQTEGVIKELKDARVK 218
V L R L+ ++ + DL LGLI L + L P +KELK+A +K
Sbjct: 53 VRRLLLRALAGEELLEELLRAGATVVAVLDLVVLGLIALTDPLYPGAREALKELKEAGIK 112
Query: 219 VVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK 278
+ ++TGDN TA ++A+ G+ D + V G + PK++ ++
Sbjct: 113 LAILTGDNRLTANAIARLLGLFDALVSADLYGLVGVGKPD-PKIFELA---------LEE 162
Query: 279 LNYSKTE 285
L E
Sbjct: 163 LGVKPEE 169
Score = 29.2 bits (65), Expect = 5.6
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 290 LSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYY--- 346
L+ A + D + + + + L L++LG
Sbjct: 116 LTGDNRLTANAIARLLGLFDAL------VSADLYGLVGVGKPDPKIFELALEELGVKPEE 169
Query: 347 VAMCGDGANDCGALRAAH 364
V M GDG ND A +AA
Sbjct: 170 VLMVGDGVNDIPAAKAAG 187
>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase.
This model encompasses two equivalog models for the
copper and cadmium-type heavy metal transporting P-type
ATPases (TIGR01511 and TIGR01512) as well as those
species which score ambiguously between both models. For
more comments and references, see the files on TIGR01511
and 01512.
Length = 556
Score = 52.6 bits (127), Expect = 5e-07
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 324 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESSVAS 378
+ A + + K +V ELQ+ G VAM GDG ND AL AA GI++ S VA
Sbjct: 427 VHAELLPEDKLAIVKELQEEGGVVAMVGDGINDAPALAAADVGIAMGAG-SDVAI 480
Score = 51.1 bits (123), Expect = 1e-06
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 185 IEKDLEFLGLIILENRLKPQTEGVIKELKDA-RVKVVMITGDNIQTAISVAKECGI 239
+ D E LG+I L ++L+P+ + I LK A +K+VM+TGDN A +VA E GI
Sbjct: 369 VAVDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGI 424
>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy
metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.
This model describes the P-type ATPase primarily
responsible for translocating cadmium ions (and other
closely-related divalent heavy metals such as cobalt,
mercury, lead and zinc) across biological membranes.
These transporters are found in prokaryotes and plants.
Experimentally characterized members of the seed
alignment include: SP|P37617 from E. coli, SP|Q10866
from Mycobacterium tuberculosis and SP|Q59998 from
Synechocystis PCC6803. The cadmium P-type ATPases have
been characterized as Type IB based on a phylogenetic
analysis which combines the copper-translocating ATPases
with the cadmium-translocating species. This model and
that describing the copper-ATPases (TIGR01511) are well
separated, and thus we further type the copper-ATPases
as IB1 and the cadmium-ATPases as IB2. Several sequences
which have not been characterized experimentally fall
just below trusted cutoff for both of these models
(SP|Q9CCL1 from Mycobacterium leprae, GP|13816263 from
Sulfolobus solfataricus, OMNI|NTL01CJ01098 from
Campylobacter jejuni, OMNI|NTL01HS01687 from
Halobacterium sp., GP|6899169 from Ureaplasma
urealyticum and OMNI|HP1503 from Helicobacter pylori)
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 536
Score = 48.9 bits (117), Expect = 8e-06
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 185 IEKDLEFLGLIILENRLKPQTEGVIKELKDARV-KVVMITGDNIQTAISVAKECGI 239
+ +D +LG I+L + +P I ELK + KVVM+TGD A VA+E GI
Sbjct: 347 VARDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGI 402
Score = 45.4 bits (108), Expect = 8e-05
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 324 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESSVAS 378
+ A + + K ++V EL++ VAM GDG ND AL AA GI++ + S VA
Sbjct: 405 VHAELLPEDKLEIVKELREKYGPVAMVGDGINDAPALAAADVGIAMGASGSDVAI 459
>gnl|CDD|215623 PLN03190, PLN03190, aminophospholipid translocase; Provisional.
Length = 1178
Score = 47.2 bits (112), Expect = 3e-05
Identities = 71/315 (22%), Positives = 130/315 (41%), Gaps = 64/315 (20%)
Query: 151 LSEYTEQGYRVIALASRTLSIDDYK--HLNY------------MKRE---DIEKDLEFLG 193
L Y+ G R + + R L+ +++ H ++ + R+ ++E +L LG
Sbjct: 660 LHTYSSLGLRTLVVGMRELNDSEFEQWHFSFEAASTALIGRAALLRKVASNVENNLTILG 719
Query: 194 LIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVP 253
+E++L+ I+ L+ A +KV ++TGD +TAIS+ ++ T + +++
Sbjct: 720 ASAIEDKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINS-- 777
Query: 254 GGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVT----GKSWELIRD 309
+ C K S A+ K S + G SS A V G S + D
Sbjct: 778 NSKESCRK-----SLEDALVMSKKLTTVSGISQNTGGSSAAASDPVALIIDGTSLVYVLD 832
Query: 310 -QMPELIPRIIVKGAIF--ARMSSDQKQQLVLELQQLGYYVAMC-GDGANDCGALRAAHA 365
++ E + ++ K ++ R++ QK +V ++ + + GDGAND ++ A
Sbjct: 833 SELEEQLFQLASKCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQMADV 892
Query: 366 GISLSEAESSVASPFTSTVANISCVLRIIREGRAALVTS---FGIFKFMVLYSLC----- 417
G+ +S +EGR A++ S G F+F+V L
Sbjct: 893 GVGISG-----------------------QEGRQAVMASDFAMGQFRFLVPLLLVHGHWN 929
Query: 418 -EFFSTMILYTIDSN 431
+ MILY N
Sbjct: 930 YQRMGYMILYNFYRN 944
>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase;
Provisional.
Length = 741
Score = 46.1 bits (110), Expect = 5e-05
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 187 KDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 239
++ + LGLI L++ L+ I ELK +K VM+TGDN + A ++A E GI
Sbjct: 555 RNDDVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGI 607
Score = 34.2 bits (79), Expect = 0.29
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 333 KQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISL 369
K + V EL Q +AM GDG ND A++AA GI++
Sbjct: 618 KVKAVTELNQH-APLAMVGDGINDAPAMKAASIGIAM 653
>gnl|CDD|225126 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B
[Inorganic ion transport and metabolism].
Length = 681
Score = 45.7 bits (109), Expect = 7e-05
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 185 IEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID 241
+ ++ LG+I L++ +KP + EL+ +K VMITGDN TA ++A E G+ D
Sbjct: 432 VVENGRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDD 488
Score = 38.0 bits (89), Expect = 0.016
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 333 KQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISL 369
K L+ + Q G VAM GDG ND AL A G+++
Sbjct: 498 KLALIRQEQAEGRLVAMTGDGTNDAPALAQADVGVAM 534
>gnl|CDD|162723 TIGR02137, HSK-PSP, phosphoserine phosphatase/homoserine
phosphotransferase bifunctional protein. This protein
is has been characterized as both a phosphoserine
phosphatase and a phosphoserine:homoserine
phosphotransferase. In Pseudomonas aeruginosa, where the
characterization was done, a second phosphoserine
phosphatase (SerB) and a second homoserine kinase (thrB)
are found, but in Fibrobacter succinogenes neither are
present. This enzyme is a member of the haloacid
dehalogenase (HAD) superfamily, specifically part of
subfamily IB by virtue of the presence of an alpha
helical domain in between motifs I and II of the HAD
domain. The closest homologs to this family are
monofunctional phosphoserine phosphatases (TIGR00338).
Length = 203
Score = 43.0 bits (101), Expect = 2e-04
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 330 SDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESSVA 377
D K+Q V+ + L Y V GD ND L AHAGI E+ +
Sbjct: 130 KDPKRQSVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGILFHAPENVIR 177
>gnl|CDD|237437 PRK13582, thrH, phosphoserine phosphatase; Provisional.
Length = 205
Score = 42.6 bits (101), Expect = 2e-04
Identities = 18/37 (48%), Positives = 20/37 (54%)
Query: 331 DQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 367
D K+Q V L+ LGY V GD ND L A AGI
Sbjct: 131 DGKRQAVKALKSLGYRVIAAGDSYNDTTMLGEADAGI 167
>gnl|CDD|184448 PRK14010, PRK14010, potassium-transporting ATPase subunit B;
Provisional.
Length = 673
Score = 43.5 bits (102), Expect = 4e-04
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 326 ARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESSV--ASPFTST 383
A + K ++ E Q G+ VAM GDG ND AL A+ G++++ S A+
Sbjct: 485 AECKPEDKINVIREEQAKGHIVAMTGDGTNDAPALAEANVGLAMNSGTMSAKEAANLIDL 544
Query: 384 VANISCVLRIIREGRAALVTSFGIFKFMVLYSLCEFFSTM 423
+N + ++ ++ G+ L+T + F + + ++F+ +
Sbjct: 545 DSNPTKLMEVVLIGKQLLMTRGSLTTFSIANDIAKYFAIL 584
Score = 37.4 bits (86), Expect = 0.028
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 192 LGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 239
LG+I L++ +K +EL++ ++ VM TGDN TA ++AKE G+
Sbjct: 433 LGVIYLKDVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGV 480
>gnl|CDD|130561 TIGR01497, kdpB, K+-transporting ATPase, B subunit. This model
describes the P-type ATPase subunit of the complex
responsible for translocating potassium ions across
biological membranes in microbes. In E. coli and other
species, this complex consists of the proteins KdpA,
KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while
KdpA is the potassium-ion translocating subunit. The
function of KdpC is unclear, although cit has been
suggested to couple the ATPase subunit to the
ion-translocating subunit , while KdpF serves to
stabilize the complex. The potassium P-type ATPases have
been characterized as Type IA based on a phylogenetic
analysis which places this clade closest to the
heavy-metal translocating ATPases (Type IB). Others
place this clade closer to the Na+/K+ antiporter type
(Type IIC) based on physical characteristics. This model
is very clear-cut, with a strong break between trusted
hits and noise. All members of the seed alignment, from
Clostridium, Anabaena and E. coli are in the
characterized table. One sequence above trusted,
OMNI|NTL01TA01282, is apparently mis-annotated in the
primary literature, but properly annotated by TIGR
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 675
Score = 42.6 bits (100), Expect = 7e-04
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 188 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID 241
D G+I L++ +K + +L+ +K +MITGDN TA ++A E G+ D
Sbjct: 434 DNRIYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDD 487
Score = 36.0 bits (83), Expect = 0.061
Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 326 ARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESSV--ASPFTST 383
A + + K L+ + Q G VAM GDG ND AL A G++++ + A+
Sbjct: 490 AEATPEDKIALIRQEQAEGKLVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEAANMVDL 549
Query: 384 VANISCVLRIIREGRAALVTSFGIFKFMVLYSLCEFFS 421
++ + ++ ++ G+ L+T + F + + ++F+
Sbjct: 550 DSDPTKLIEVVHIGKQLLITRGALTTFSIANDVAKYFA 587
>gnl|CDD|226572 COG4087, COG4087, Soluble P-type ATPase [General function
prediction only].
Length = 152
Score = 40.2 bits (94), Expect = 7e-04
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 324 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 367
+FA + K +++ EL++ V M G+GAND ALR A GI
Sbjct: 73 VFAGADPEMKAKIIRELKKRYEKVVMVGNGANDILALREADLGI 116
>gnl|CDD|234905 PRK01122, PRK01122, potassium-transporting ATPase subunit B;
Provisional.
Length = 679
Score = 41.7 bits (99), Expect = 0.001
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 187 KDLEFLGLIILENRLKPQTEGV---IKELKDARVKVVMITGDNIQTAISVAKECGIID 241
+D LG+I L++ +KP G+ EL+ +K VMITGDN TA ++A E G+ D
Sbjct: 432 EDNRVLGVIYLKDIVKP---GIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDD 486
Score = 36.7 bits (86), Expect = 0.040
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 333 KQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 367
K L+ + Q G VAM GDG ND AL A G+
Sbjct: 496 KLALIRQEQAEGRLVAMTGDGTNDAPALAQADVGV 530
>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional.
Length = 834
Score = 40.9 bits (96), Expect = 0.002
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 331 DQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISL 369
D K + + LQ G VAM GDG ND AL A GI++
Sbjct: 699 DGKAEAIKRLQSQGRQVAMVGDGINDAPALAQADVGIAM 737
Score = 35.5 bits (82), Expect = 0.11
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 201 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 239
L+ + ++ L A ++VM+TGDN TA ++AKE GI
Sbjct: 651 LRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGI 689
>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell
wall biogenesis [Cell envelope biogenesis, outer
membrane].
Length = 439
Score = 37.2 bits (86), Expect = 0.022
Identities = 16/162 (9%), Positives = 51/162 (31%), Gaps = 19/162 (11%)
Query: 468 LNSLFSYVTLLSMFFQLILMVSMQIISFIIVHKFAWFEPFVYTNAISYSCYENYAVFSIS 527
L +LF ++ L ++ +++ + + + + + + +
Sbjct: 294 LPALFRPLSGYRFILLLFSLLLPLLLTLL------FLLSIIPSLLLILLSGLLALLLANV 347
Query: 528 MFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPPN 587
+ +L + L + +++ + +T I + +
Sbjct: 348 ILAAFLLILLIPPL-----------LALFALLQLGVF--LVTTKGLRLIAKLVVYLLVIL 394
Query: 588 MQFPLIVIYLAICNFVLSLFIENFIIHYLLMIKFKRWSNDYK 629
+ F +VI+ I L+L L++++K +
Sbjct: 395 IIFLPLVIWPLILILNLTLLKTVSWRTLNLVVEWKTLRGIQR 436
>gnl|CDD|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related
dehydrogenases. Alanine dehydrogenase/Transhydrogenase,
such as the hexameric L-alanine dehydrogenase of
Phormidium lapideum, contain 2 Rossmann fold-like
domains linked by an alpha helical region. Related
proteins include Saccharopine Dehydrogenase (SDH),
bifunctional lysine ketoglutarate reductase
/saccharopine dehydrogenase enzyme,
N(5)-(carboxyethyl)ornithine synthase, and Rubrum
transdehydrogenase. Alanine dehydrogenase (L-AlaDH)
catalyzes the NAD-dependent conversion of pyrucate to
L-alanine via reductive amination. Transhydrogenases
found in bacterial and inner mitochondrial membranes
link NAD(P)(H)-dependent redox reactions to proton
translocation. The energy of the proton electrochemical
gradient (delta-p), generated by the respiratory
electron transport chain, is consumed by
transhydrogenase in NAD(P)+ reduction. Transhydrogenase
is likely involved in the regulation of the citric acid
cycle. Rubrum transhydrogenase has 3 components, dI,
dII, and dIII. dII spans the membrane while dI and dIII
protrude on the cytoplasmic/matirx side. DI contains 2
domains with Rossmann folds, linked by a long alpha
helix, and contains a NAD binding site. Two dI
polypeptides (represented in this sub-family)
spontaneously form a heterotrimer with one dIII in the
absence of dII. In the heterotrimer, both dI chains may
bind NAD, but only one is well-ordered. dIII also binds
a well-ordered NADP, but in a different orientation than
classical Rossmann domains.
Length = 317
Score = 36.6 bits (85), Expect = 0.036
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 158 GYRVIALASRTLSIDDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARV 217
G +A + + L Y +E+ K +E LG L Q E + KELK +
Sbjct: 174 GLGAAKIAKKLGANV----LVYDIKEEKLKGVETLGGSRLR---YSQKEELEKELKQTDI 226
Query: 218 KVVMITGDNIQTAISVAKE-CGIIDPGETVVDVSAVPGG 255
+ I D + I + +E G + G +VD++A GG
Sbjct: 227 LINAILVDGPRAPILIMEELVGPMKRGAVIVDLAADQGG 265
>gnl|CDD|221729 pfam12710, HAD, haloacid dehalogenase-like hydrolase.
Length = 122
Score = 34.1 bits (78), Expect = 0.053
Identities = 12/57 (21%), Positives = 22/57 (38%)
Query: 185 IEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID 241
+ D L L+ + + + ++ VV+++G VAK GI D
Sbjct: 10 TDSDTALLLLLEALAEDRRLGLLGLSDAEELLELVVIVSGSPEPLVRPVAKALGIDD 66
Score = 32.2 bits (73), Expect = 0.26
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 318 IIVKGAIFARMSSDQKQQLVLELQQL--GYYVAMCGDGANDCGALR 361
++V G + ++ + K + L Q Y V GD +D AL+
Sbjct: 77 VLVDGRLTGKLDGEGKAAALKRLAQKIGRYPVVAVGDSISDLPALK 122
>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases. The
haloacid dehalogenase-like (HAD) superfamily includes
L-2-haloacid dehalogenase, epoxide hydrolase,
phosphoserine phosphatase, phosphomannomutase,
phosphoglycolate phosphatase, P-type ATPase, and many
others, all of which use a nucleophilic aspartate in
their phosphoryl transfer reaction. All members possess
a highly conserved alpha/beta core domain, and many also
possess a small cap domain, the fold and function of
which is variable. Members of this superfamily are
sometimes referred to as belonging to the DDDD
superfamily of phosphohydrolases.
Length = 139
Score = 33.5 bits (77), Expect = 0.11
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 196 ILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 255
I E L P + +KELK+ +K+ + T + + + + +E G+ D + V+ + G
Sbjct: 20 IEELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSN---GA 76
Query: 256 LKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGL 290
PK + G K + LG+
Sbjct: 77 AIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGV 111
>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is
a conserved membrane protein. The yfhO gene is
transcribed in Difco sporulation medium and the
transcription is affected by the YvrGHb two-component
system. Some members of this family have been annotated
as glycosyl transferases of the PMT family.
Length = 835
Score = 33.8 bits (78), Expect = 0.35
Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 40/231 (17%)
Query: 404 SFGIFKFMVLYSLCEFFSTMILYTIDSNLTDFEFLYIDIALVVNFAFFFGRNHAFSGPLT 463
S GI ++L ++ + YT S L F+ +D L+ G
Sbjct: 223 SGGISAVVLLPTVLGLLNNKRAYTEVSILLTFDINPLD--LLAKLLIGSFNFTQMGG--- 277
Query: 464 SETPLNSLFSYVTLLSMFFQLILMVSMQI-----------ISFIIVHKFAWFEPFVYT-N 511
YV LL + ++ + I + F+I+ + P +
Sbjct: 278 ------LPNIYVGLLPLLLLILYFFNKLIKLKEKLLFALLLLFLIL--SFYLPPLDLVWH 329
Query: 512 AISY---SCYENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWVCIYI 568
Y +FS + ++LA K ++SI+++ + I +
Sbjct: 330 GFQAPVWFPYRFSFLFSFLI---LLLAAEALL----HLKQLKKLKILISILLLVLLFILV 382
Query: 569 TLIPSEFIIQFLQLRFPPNMQFPLIVIYLAICNFVLSLFIENFIIHYLLMI 619
L+ FL L +++L + +L LF++ I L++I
Sbjct: 383 FLLNLSKHYSFLTQT-----NLLLTLLFLLLYLLLLLLFLKKQIRKKLVII 428
>gnl|CDD|216682 pfam01757, Acyl_transf_3, Acyltransferase family. This family
includes a range of acyltransferase enzymes. This domain
is found in many as yet uncharacterized C. elegans
proteins and it is approximately 300 amino acids long.
Length = 326
Score = 33.3 bits (76), Expect = 0.37
Identities = 24/164 (14%), Positives = 49/164 (29%), Gaps = 17/164 (10%)
Query: 408 FKFMVLYSLCEFFSTMILYTIDSNLTDFEFLYIDIALVVNFAFFFGRNHAFSGPLTSETP 467
+++ L F +L + L + + L+ F L P
Sbjct: 179 VLNLLIGLLPFFLLGALLARYRKRIRSKRLLLLIVILLALALLALILLLLFLFGLVYLAP 238
Query: 468 -LNSLFSYVTLLSMFFQLILMVSMQIISFIIVHKFAWFEPFVYTNAISYSCYENYAVFSI 526
L FS + LL L+L ++ ++ + + Y S Y
Sbjct: 239 ELYGYFSLLLLLLGVLLLLL------LALLLANLRSLKRLLKYLGKYSLGIY-------- 284
Query: 527 SMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWVCIYITL 570
+ IL + LF+L++++ V + +
Sbjct: 285 -LIHPPILLLLTKLLLLLPPLGP-ILLFLLALVLTLLVSLLLAR 326
>gnl|CDD|226446 COG3936, COG3936, Protein involved in polysaccharide intercellular
adhesin (PIA) synthesis/biofilm formation [Carbohydrate
transport and metabolism].
Length = 349
Score = 32.9 bits (75), Expect = 0.49
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 24/125 (19%)
Query: 440 IDIALVVNFAFFFGRNHAFSGPLTSETPLNSL--FSYVTLLSMFFQLILMVSMQIISFII 497
+ IAL FFF H + S P + F Y+ L F + + IS
Sbjct: 221 LIIALAAFTFFFFLAYHMLPSAIMSLYPTIASIIFVYLVLCFHFKFRLSSKPLLFIS--- 277
Query: 498 VHKFAWFEPFVYTNAISYSCYENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILS 557
IS+ Y + ++ F +I ++G Y +Y + I++
Sbjct: 278 --------------NISFEIYLLHMKILVAFFSFIG-----ARGSIYIVYLYLILVIIVA 318
Query: 558 IIIMT 562
I
Sbjct: 319 FCINK 323
>gnl|CDD|224768 COG1855, COG1855, ATPase (PilT family) [General function prediction
only].
Length = 604
Score = 32.3 bits (74), Expect = 0.85
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 133 SGDYQSVLISVPENIVSVLSEYTEQGYRVIALASRTLSIDDYKHLNYMKREDIEKDLEFL 192
SG+ + + +PE +VS L +G R I A +++ K L ++ + +LEF+
Sbjct: 25 SGEIEGATVIIPEAVVSELEAQANRG-REIGFAG----LEELKKL-RDLADEGKIELEFV 78
Query: 193 GLIILENRLKPQTEGVIKELKD---ARVKVVMITGDNIQTAISVAK 235
G +K G I + ++T D +Q ++ AK
Sbjct: 79 GERPTLEEIKRAKSGEIDAMIREVALEYGATLVTSDRVQRDVARAK 124
>gnl|CDD|217269 pfam02887, PK_C, Pyruvate kinase, alpha/beta domain. As well as
being found in pyruvate kinase this family is found as
an isolated domain in some bacterial proteins.
Length = 117
Score = 30.2 bits (69), Expect = 1.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 227 IQTAISVAKECGIIDPGETVVDVSAVPGG 255
I A+ +AK+ G++ G+ VV + VP G
Sbjct: 77 IAEALRMAKDAGLVKKGDLVVVTAGVPVG 105
>gnl|CDD|214792 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM.
This superfamily contains MoaA, NifB, PqqE,
coproporphyrinogen III oxidase, biotin synthase and MiaB
families, and includes a representative in the
eukaryotic elongator subunit, Elp-3. Some members of the
family are methyltransferases.
Length = 216
Score = 31.2 bits (71), Expect = 1.3
Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 32/138 (23%)
Query: 144 PENIVSVLSEYTEQGYRVIALASRTLSIDDYKHLNYMKREDI------EKDLEFLGLIIL 197
E +V + E+G + + + + L+ + E++ L I +
Sbjct: 32 LEALVREIELLAEKGEKEGLVGTVFIGGGTPTLLSPEQLEELLEAIREILGLAKDVEITI 91
Query: 198 ENRLKPQTEGVIKELKDARVKVV-----------------MITGDNIQTAISVAKECGII 240
E R TE +++ LK+A V V T +++ A+ + +E G I
Sbjct: 92 ETRPDTLTEELLEALKEAGVNRVSLGVQSGDDEVLKAINRGHTVEDVLEAVELLREAGPI 151
Query: 241 D---------PGETVVDV 249
PGET D
Sbjct: 152 KVSTDLIVGLPGETEEDF 169
>gnl|CDD|211993 TIGR04270, Rama_corrin_act, methylamine methyltransferase corrinoid
protein reductive activase. Members of this family
occur as paralogs in species capable of generating
methane from mono-, di-, and tri-methylamine. Members
include RamA (Reductive Activation of Methyltransfer,
Amines) from Methanosarcina barkeri MS (DSM 800). Member
proteins have two C-terminal motifs with four Cys each,
likely to bind one 4Fe-4S cluster per motif.
Length = 535
Score = 31.7 bits (72), Expect = 1.6
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 184 DIEKDLEFLGLIILENRLKPQ-------TEGVIKELKDARVKVVMITGDNIQTAISVAKE 236
D+E + F ++L+ +KP G KE + R ITG + AI + E
Sbjct: 217 DLEPEGGFWRNMVLDEEMKPVPGPLVDPRTGEFKESGNPR-PAKGITGTGVIAAIYLGIE 275
Query: 237 CGIIDP 242
CG+I+
Sbjct: 276 CGLIEL 281
>gnl|CDD|112146 pfam03317, ELF, ELF protein. This is a family of hypothetical
proteins from cereal crops.
Length = 284
Score = 31.2 bits (70), Expect = 1.8
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 553 LFILSIIIMTWVCIYITLIPSEFIIQFLQLR--------FPPNMQFPLIVIYLAICNFVL 604
+F I I ++ Y L+P I+ L PP +Q P + +LA NF L
Sbjct: 62 IFFFKISICRFISFYRILLP---ILHLFGLLTCASFLITLPPEIQDPQALAHLAGLNFYL 118
Query: 605 SLF 607
SL+
Sbjct: 119 SLY 121
>gnl|CDD|223731 COG0658, ComEC, Predicted membrane metal-binding protein [General
function prediction only].
Length = 453
Score = 31.3 bits (71), Expect = 2.0
Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 21/157 (13%)
Query: 444 LVVNFAFFFGRNHAFSGPLTSETPLNSLFSYVTLLSMFFQLILMVSMQIISFIIVHKFAW 503
+ A RN + L L + + +LS+ F L + +I + + +
Sbjct: 300 ALALLASLSLRNLSSIFILLLSAIAILLLAPLAILSLGFWLSFLAVAALILWSQLFRLLG 359
Query: 504 F-EPFVYTNAISYSCYENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMT 562
P T A+ A + + Q+ L + G I ++S+I +
Sbjct: 360 LSWPLPITLALL-------ATLPLLILQFGRLGLL---GLLL-NLIV---SPLISLISLP 405
Query: 563 WVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVIYLAI 599
+ L P ++ FL + P + L++ L I
Sbjct: 406 GLLANFLLSP---LVSFLIV---PLILLGLLLAPLLI 436
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 31.2 bits (71), Expect = 2.2
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 547 PIYKNKLFILSIIIMTWVCIYITLIP--SEFIIQFLQLRFPPNMQFPLIVIYLAICNFVL 604
K KL +L+I+++ + L+P II L ++ L+++ LA+ VL
Sbjct: 9 KYLKYKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVL 68
Query: 605 SLFIENFIIHYL 616
+++++ L
Sbjct: 69 R-ALQSYLGSRL 79
>gnl|CDD|240151 cd05024, S-100A10, S-100A10: A subgroup of the S-100A10 domain
found in proteins similar to S100A10. S100A10 is a
member of the S100 family of EF-hand superfamily of
calcium-binding proteins. Note that the S-100 hierarchy,
to which this S-100A10 group belongs, contains only
S-100 EF-hand domains, other EF-hands have been modeled
separately. S100 proteins are expressed exclusively in
vertebrates, and are implicated in intracellular and
extracellular regulatory activities. A unique feature of
S100A10 is that it contains mutation in both of the
calcium binding sites, making it calcium insensitive.
S100A10 has been detected in brain, heart,
gastrointestinal tract, kidney, liver, lung, spleen,
testes, epidermis, aorta, and thymus. Structural data
supports the homo- and hetero-dimeric as well as
hetero-tetrameric nature of the protein. S100A10 has
multiple binding partners in its calcium free state and
is therefore involved in many diverse biological
functions.
Length = 91
Score = 28.7 bits (64), Expect = 2.6
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 178 NYMKREDIEK--DLEFLGLIILENRLKPQT-EGVIKELKDAR 216
NY+ R+D++K + EF L+N+ P + ++K+L D R
Sbjct: 22 NYLNRDDLQKLMEKEFSEF--LKNQNDPMAVDKIMKDLDDCR 61
>gnl|CDD|173004 PRK14538, PRK14538, putative bifunctional signaling protein/50S
ribosomal protein L9; Provisional.
Length = 838
Score = 31.0 bits (70), Expect = 2.7
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 549 YKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVIYLAICNFVLSLFI 608
+K K +++I+I+ + I++ Q+ N I NF+ + +
Sbjct: 7 HKTKFIVIAIVIVVLILIFLCFDLQNIQEIIEQINQLTNNSGMRKKIIFFTFNFLGKIIL 66
Query: 609 ENFIIHYLLMIKFKRWSNDYKCCKYIGIENELDSNYMWPKLS 650
II +LL IK K I+ + +W KLS
Sbjct: 67 AILIISFLLNIK-----------KNAQIKRLQNKLSLWSKLS 97
>gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2
(CPA2) family. [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 273
Score = 29.9 bits (68), Expect = 3.4
Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 14/110 (12%)
Query: 395 REGRAALVTS-FGIFKFMVLYSLCEFFSTMILYTIDSNLTDFEFLYIDIALVVNFAFFFG 453
G+ L F + L +L +T L + + L G
Sbjct: 132 PFGQTVLGILLFQDIAVVPLLALLPLLATSASTE----HVALALLLLKVFLAFLLLVLLG 187
Query: 454 RNH---AFSGPLTSETPLNSLFSYVTLLSMFFQLILM----VSMQIISFI 496
R LT+E + LF+ +LL MF +SM + +F+
Sbjct: 188 RWLLRPVLR--LTAELRPSELFTAGSLLLMFGSAYFADLLGLSMALGAFL 235
>gnl|CDD|184475 PRK14047, PRK14047, putative methyltransferase; Provisional.
Length = 310
Score = 30.1 bits (68), Expect = 3.5
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 29/124 (23%)
Query: 140 LISVPENIV-SVLSEYTEQGYRVIALASRTL------SIDDYKHLNYMKREDIEKDLEFL 192
LI PE V + +EY + I LA R + SI + + +K+ DI+
Sbjct: 100 LIDSPEGEVRAAAAEYVTE----IGLADRAIYNSINMSIHE-SEIEALKQSDIDSS---- 150
Query: 193 GLIILE-NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSA 251
I+L N + +G ++ L+ G + + +A +CGI + ++D S
Sbjct: 151 --IVLGFNAMDSSLKGRMEMLETG-------GGLLEKGLLEIADDCGITNI---LIDPSI 198
Query: 252 VPGG 255
P G
Sbjct: 199 TPMG 202
>gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases
[Cell envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism].
Length = 588
Score = 30.3 bits (69), Expect = 3.8
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 10/53 (18%)
Query: 553 LFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVIYLAICNFVLS 605
IL+ +++ V + + L+ LR + L IC F+L
Sbjct: 1 ALILTDLLLVLVALALALL----------LRDELSASLWSGAQLLTICVFILF 43
>gnl|CDD|217866 pfam04055, Radical_SAM, Radical SAM superfamily. Radical SAM
proteins catalyze diverse reactions, including unusual
methylations, isomerisation, sulphur insertion, ring
formation, anaerobic oxidation and protein radical
formation.
Length = 165
Score = 29.4 bits (66), Expect = 4.3
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 144 PENIVSVLSEYTEQGYRVIALAS--RTLSIDDYKHLNYMKREDIEKDLEFLGLIILENRL 201
PE I+ E G V+ L L D + L + + + + L L
Sbjct: 30 PEEILEEAKELARLGVEVVILTGGEPLLLPDLVELLERLLKLREGEGIRI-TLETNGTLL 88
Query: 202 KPQTEGVIKELKDARVKVVMITGDNIQTA 230
E +++ELK+A + V I ++Q+
Sbjct: 89 ---DEELLEELKEAGLDRVSI---SLQSG 111
>gnl|CDD|183025 PRK11188, rrmJ, 23S rRNA methyltransferase J; Provisional.
Length = 209
Score = 29.7 bits (67), Expect = 4.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 239 IIDPGETVVDVSAVPGG 255
+ PG TVVD+ A PGG
Sbjct: 48 LFKPGMTVVDLGAAPGG 64
>gnl|CDD|222658 pfam14296, O-ag_pol_Wzy, O-antigen polysaccharide polymerase Wzy.
This family includes O-antigen polysaccharide
polymerases. These enzymes link O-units via a glycosidic
linkage to form a long O-antigen. These enzymes vary in
specificity and sequence.
Length = 440
Score = 30.0 bits (68), Expect = 4.4
Identities = 24/163 (14%), Positives = 56/163 (34%), Gaps = 14/163 (8%)
Query: 422 TMILYTIDSNLTDFEFLYIDIALVVNFAFFFGRNHAFSGPLTSETPLNSLFSYVTLLSMF 481
+L+ I D FL + + L+ F + A + F ++ +F
Sbjct: 2 AFVLFIIGLFFNDLLFLLVALLLIWIANFVY----ALKK----LKKRSLYFLFLITFFVF 53
Query: 482 FQLILMVSMQIISFIIVHKFAWFEPFVYTNAISYSCYENYAVFSISMFQYIILAITFSQG 541
+ + ++ + + F Y I + + + +F IL +
Sbjct: 54 -----LFGRPFLDYLFGYNDSIFANDFYNEDIIFEALILLILSLLFLFLGYILGRKKKRK 108
Query: 542 KPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRF 584
K + + + + ++ ++ + YIT I S I + +L
Sbjct: 109 KEKKKNQLEYERLLKNLRKLSLILFYITFIFS-LIYLYEKLLI 150
>gnl|CDD|232927 TIGR00338, serB, phosphoserine phosphatase SerB. Phosphoserine
phosphatase catalyzes the reaction 3-phospho-serine +
H2O = L-serine + phosphate. It catalyzes the last of
three steps in the biosynthesis of serine from
D-3-phosphoglycerate. Note that this enzyme acts on free
phosphoserine, not on phosphoserine residues of
phosphoproteins [Amino acid biosynthesis, Serine
family].
Length = 219
Score = 29.6 bits (67), Expect = 4.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 349 MCGDGANDCGALRAAHAGI 367
GDGAND ++AA GI
Sbjct: 173 AVGDGANDLSMIKAAGLGI 191
>gnl|CDD|222059 pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 206
Score = 29.5 bits (67), Expect = 4.7
Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 22/136 (16%)
Query: 475 VTLLSMFFQLILMVSMQIISFIIVHKFAWFEPFVYTNAISYSCYENYAVFSISMFQYIIL 534
+L+ +I+ + I +I E + + I
Sbjct: 85 FSLILGLIGIIISFLIAFIVSLIFGNITISELL-------------LILLIGLIIALIFG 131
Query: 535 AITFSQGKP--YRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPL 592
AI P Y+ K ++ ++ II + I+ I+ + ++ +
Sbjct: 132 AILL----PLYYKFGYEKGRIILIIIIFLIIFIIFAIFKILNLILSLINN---SSLLLII 184
Query: 593 IVIYLAICNFVLSLFI 608
I++ + I +++S FI
Sbjct: 185 ILLVIIIILYIISYFI 200
>gnl|CDD|233018 TIGR00551, nadB, L-aspartate oxidase. L-aspartate oxidase is the B
protein, NadB, of the quinolinate synthetase complex.
Quinolinate synthetase makes a precursor of the pyridine
nucleotide portion of NAD. This model identifies
proteins that cluster as L-aspartate oxidase (a
flavoprotein difficult to separate from the set of
closely related flavoprotein subunits of succinate
dehydrogenase and fumarate reductase) by both UPGMA and
neighbor-joining trees. The most distant protein
accepted as an L-aspartate oxidase (NadB), that from
Pyrococcus horikoshii, not only clusters with other NadB
but is just one gene away from NadA [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pyridine
nucleotides].
Length = 488
Score = 29.8 bits (67), Expect = 4.8
Identities = 14/48 (29%), Positives = 17/48 (35%)
Query: 293 GAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLEL 340
GAY G + EL PR IV AI M + L+
Sbjct: 247 GAYLVDRDGTRFMADFHPRGELAPRDIVARAIDHEMKRGGADCVFLDA 294
>gnl|CDD|223720 COG0647, NagD, Predicted sugar phosphatases of the HAD superfamily
[Carbohydrate transport and metabolism].
Length = 269
Score = 29.5 bits (67), Expect = 5.3
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 12/104 (11%)
Query: 193 GLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVA---KECGIID-PGETVVD 248
G++ N P +K LK A V+ +T ++ ++ VA G +D + +V
Sbjct: 17 GVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVT 76
Query: 249 VSAVP-----GGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEE 287
S K KVY V G ++ + + + +EE
Sbjct: 77 -SGDATADYLAKQKPGKKVY--VIGEEGLKEELEGAGFELVDEE 117
>gnl|CDD|220507 pfam09991, DUF2232, Predicted membrane protein (DUF2232). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 290
Score = 29.5 bits (67), Expect = 6.3
Identities = 11/67 (16%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 558 IIIMTWVCIYITLIPSEFIIQFLQLRFPP-----NMQFPLIVIYLAICNFVLSLFIENFI 612
++I ++ ++ + ++ I++ L + P + P ++++ I +L LF+++
Sbjct: 165 LVITAFLAAFLNYLLAKPILKRLGVDVPKLPPFREWKLPESLVWIYIIALLLLLFLKDEG 224
Query: 613 IHYLLMI 619
L I
Sbjct: 225 GSLLYYI 231
>gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase)
[Translation, ribosomal structure and biogenesis].
Length = 509
Score = 29.4 bits (67), Expect = 6.4
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 12/65 (18%)
Query: 201 LKPQTEGVIKELKDARVKVVMI------TGDNIQTAISVAKECGIIDP----GET-VVDV 249
+ PQT I K A V +V+ N +E G++ P G+ V V
Sbjct: 92 VMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLV-PEEWGGDVIFVPV 150
Query: 250 SAVPG 254
SA G
Sbjct: 151 SAKTG 155
>gnl|CDD|173361 PTZ00066, PTZ00066, pyruvate kinase; Provisional.
Length = 513
Score = 29.3 bits (66), Expect = 6.7
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 208 VIKELKDAR-VKVVMI-----TGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 255
V+K L AR V ++ T I+ AI++AKE G+++ G++ + V V
Sbjct: 446 VVKSLSVARGVTTYVVNSFQGTDVVIRNAIALAKERGLVESGDSAIAVHGVKEE 499
>gnl|CDD|238178 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): Large allosteric
enzyme that regulates glycolysis through binding of the
substrate, phosphoenolpyruvate, and one or more
allosteric effectors. Like other allosteric enzymes, PK
has a high substrate affinity R state and a low affinity
T state. PK exists as several different isozymes,
depending on organism and tissue type. In mammals,
there are four PK isozymes: R, found in red blood cells,
L, found in liver, M1, found in skeletal muscle, and M2,
found in kidney, adipose tissue, and lung. PK forms a
homotetramer, with each subunit containing three
domains. The T state to R state transition of PK is
more complex than in most allosteric enzymes, involving
a concerted rotation of all 3 domains of each monomer in
the homotetramer.
Length = 480
Score = 29.6 bits (67), Expect = 6.8
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 10/43 (23%)
Query: 213 KDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 255
DAR+K A++VAKE G++ G+ VV V P G
Sbjct: 436 TDARLKA----------AVNVAKEKGLLKKGDLVVVVQGWPVG 468
>gnl|CDD|109186 pfam00119, ATP-synt_A, ATP synthase A chain.
Length = 217
Score = 28.7 bits (65), Expect = 7.5
Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 15/132 (11%)
Query: 475 VTLLSMFFQLILMVSMQIISFIIVHK----------FAWFEPFVYT---NAISYSCYENY 521
LLS+F L+L++ + ++S FV + I +
Sbjct: 3 FHLLSLFMLLLLLLILFLVSLATTKNLTVPSRFQSFLELIVDFVLNLIKDQIGGKGGPLF 62
Query: 522 AVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQ 581
A I++F +I+++ PY + LS+ + W+ I I ++
Sbjct: 63 APLIITLFLFILIS-NLLGLIPYSFTPTSDISLTLSLALPLWLATLIYGIKNKG-FSGFS 120
Query: 582 LRFPPNMQFPLI 593
PP LI
Sbjct: 121 HLVPPGTPLFLI 132
>gnl|CDD|238803 cd01569, PBEF_like, pre-B-cell colony-enhancing factor (PBEF)-like.
The mammalian members of this group of nicotinate
phosphoribosyltransferases (NAPRTases) were originally
identified as genes whose expression is upregulated upon
activation in lymphoid cells. In general, nicotinate
phosphoribosyltransferase catalyses the formation of
NAMN and PPi from 5-phosphoribosy -1-pyrophosphate
(PRPP) and nicotinic acid, this is the first, and also
rate limiting, reaction in the NAD salvage synthesis.
Length = 407
Score = 29.2 bits (66), Expect = 7.9
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 128 IVRPPSGDYQSVLISVPENIVSVL-SEYTEQGYRVI 162
++RP SGD ++ V E + + +GY+V+
Sbjct: 288 VIRPDSGDPVDIICGVLEILGEIFGGTVNSKGYKVL 323
>gnl|CDD|177158 MTH00095, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 527
Score = 29.1 bits (66), Expect = 8.9
Identities = 24/165 (14%), Positives = 56/165 (33%), Gaps = 30/165 (18%)
Query: 472 FSYVTLLSMFFQLILMVSM----------------QIISFIIVHKFAWFEPFVYTNAISY 515
+S L MF QL L+V++ I+ + + F ++ ++
Sbjct: 312 YSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFL 371
Query: 516 S---CYENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIP 572
+ Y + F +S F ++ + S + + + L S+ + W+ + +P
Sbjct: 372 TFGYSYRLWKSFFLS-FSKVVNVYSSSVLMNFLSLM----LVFFSVFFLWWLNFNLLNLP 426
Query: 573 SEFIIQFLQLRFPPNMQFPLIVIYLAICNFVLSLFIENFIIHYLL 617
S F L + + + + F L + + +
Sbjct: 427 SLF------LYLDFYVPLFYLFMIMLFSFFFFKLLFKELKYKFFV 465
>gnl|CDD|224356 COG1439, COG1439, Predicted nucleic acid-binding protein, consists
of a PIN domain and a Zn-ribbon module [General function
prediction only].
Length = 177
Score = 28.5 bits (64), Expect = 8.9
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 22/110 (20%)
Query: 205 TEGVIKELKDA-------------RVKVVMITGDNIQTAISVAKECG-IIDPGETVVDVS 250
T V++E+KD +VKV + + ++ AK+ G + + T ++V
Sbjct: 32 TPSVVEEIKDRESRSLLELLLESGKVKVAEPSTEYVKEVREAAKKTGDLGNLSPTDIEVL 91
Query: 251 AVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVT 300
A+ L E +V + ++Q A +L L + S +YK +
Sbjct: 92 ALALELGEEVQVAL-ATDDYSVQNVALQLG-------LNVRSISYKGKIK 133
>gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional.
Length = 444
Score = 29.0 bits (66), Expect = 9.0
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 25/81 (30%)
Query: 199 NRLKPQTEGVIKELKDARVKV---------VMITGDNIQ---------------TAISVA 234
N LK E +I++L++ +V ++I NI +++ VA
Sbjct: 184 NTLKISVEELIEKLEEEGYEVEESLLSPEALVIEKGNIAGTDLFKDGLITIQDESSMLVA 243
Query: 235 KECGIIDPGETVVDVSAVPGG 255
G+TV+D A PGG
Sbjct: 244 PALDP-KGGDTVLDACAAPGG 263
>gnl|CDD|238620 cd01295, AdeC, Adenine deaminase (AdeC) directly deaminates adenine
to form hypoxanthine. This reaction is part of one of
the adenine salvage pathways, as well as the degradation
pathway. It is important for adenine utilization as a
purine, as well as a nitrogen source in bacteria and
archea.
Length = 422
Score = 28.7 bits (65), Expect = 9.7
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 142 SVPENIVSVLSEYTEQGYRVIALASRTLSIDDYK---HLNYMKREDIEKDLEFL 192
S+ +N+ ++L TE+ +R + + DD HL+Y+ R IE +
Sbjct: 185 SIAKNLEALLPAITEKNFRRFMFCTDDVHPDDLLSEGHLDYIVRRAIEAGIPPE 238
>gnl|CDD|129836 TIGR00753, undec_PP_bacA, undecaprenyl-diphosphatase UppP. This is
a family of small, highly hydrophobic proteins.
Overexpression of this protein in Escherichia coli is
associated with bacitracin resistance, and the protein
was originally proposed to be an undecaprenol kinase and
called bacA. It is now known to be an undecaprenyl
pyrophosphate phosphatase (EC 3.6.1.27) and is renamed
UppP [Cell envelope, Biosynthesis and degradation of
murein sacculus and peptidoglycan].
Length = 255
Score = 28.5 bits (64), Expect = 9.8
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 567 YITLIPSEFIIQFLQLR-----FPPNMQFPLIVIYLAICNFVLSLFIENFIIHYLLMIKF 621
++ IP F L L+ F LIV I FV++LF + + +L
Sbjct: 187 FLLAIPIMFGAGLLSLKKSWDSFTSGDFPELIV--GFITAFVVALFAIAWFLKFLNKHSL 244
Query: 622 K 622
Sbjct: 245 Y 245
>gnl|CDD|234570 PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.
Length = 911
Score = 29.0 bits (66), Expect = 9.9
Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 30/117 (25%)
Query: 160 RVIALASRTLSIDDYKHLNYMKREDIEKDLEFLG--------LIILENRLKPQTEGVIKE 211
+A +R L + DY L+ E EK FL LI T + E
Sbjct: 418 DAVAELTRYLGLGDYASLS----EA-EK-QAFLLRELNSRRPLIPPNWEYSELTSKELAE 471
Query: 212 LKDARVKVVMITGDNI--QTAISVA-------------KECGIIDPGETVVDVSAVP 253
AR +++ G IS+A KE G++DP + VP
Sbjct: 472 FLAAR-RLIAEFGAEAIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVP 527
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.410
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,353,122
Number of extensions: 3479225
Number of successful extensions: 3809
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3713
Number of HSP's successfully gapped: 246
Length of query: 674
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 571
Effective length of database: 6,369,140
Effective search space: 3636778940
Effective search space used: 3636778940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.6 bits)