RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6090
(674 letters)
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 137 bits (347), Expect = 1e-33
Identities = 93/513 (18%), Positives = 177/513 (34%), Gaps = 128/513 (24%)
Query: 143 VPENIVSVLSEYTEQGYRVIALASRTLSIDDYKHLNYMKREDIEKDLEFLGLIILENRLK 202
+ + ++S++ +Y E+G R +A+A + + +E EF+GL+ L + +
Sbjct: 439 LSKKVLSIIDKYAERGLRSLAVA--------RQVVPEKTKESPGAPWEFVGLLPLFDPPR 490
Query: 203 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKV 262
+ I+ + V V MITGD + + G+ G + SA+ G
Sbjct: 491 HDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGM---GTNMYPSSALLGT------- 540
Query: 263 YFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKG 322
+ + + +I K
Sbjct: 541 ---------------HKDANLASIPVE---------------------------ELIEKA 558
Query: 323 AIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEA-----ESS-- 375
FA + + K ++V +LQ+ + V M GDG ND AL+ A GI++++A +S
Sbjct: 559 DGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVADATDAARGASDI 618
Query: 376 -VASPFTSTVANISCVLRIIREGRA-----------ALVTSFGIFKFMVLYSLCEFFS-- 421
+ P +S ++ + RA A+ + I +L +L F
Sbjct: 619 VLTEP------GLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWEFDFS 672
Query: 422 -TMILYTIDSNL-TDFEFLYIDIALVVNFAFFFGRNHAFSGPLTSETP----LNSLFSYV 475
M+L + D + I + S TP L +F+
Sbjct: 673 AFMVLII---AILNDGTIMTI----------------SKDRVKPSPTPDSWKLKEIFAT- 712
Query: 476 TLLSMFFQLILMVSMQIISFIIVHKFAWFEPFVYTNAISYSCYE--NYAVFSISMFQYII 533
M +I F HK +F +I + +E +S+ +
Sbjct: 713 ----GVVLGGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHELMGAVYLQVSIISQAL 768
Query: 534 LAITFSQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLI 593
+ +T S+ + L +++ +I + TLI +F ++R + +
Sbjct: 769 IFVTRSRSWSFVER--PGALLMIAFLI---AQLIATLIAVYANWEFAKIR-GIGWGWAGV 822
Query: 594 VIYLAICNFVLSLFIENFIIHYLLMIKFKRWSN 626
+ +I + L + F I Y+L K W N
Sbjct: 823 IWLYSIVTYFP-LDVFKFAIRYIL--SGKAWLN 852
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type
ATPase, membrane protein, hydrolase, aluminium fluoride,
ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A
Length = 1034
Score = 130 bits (329), Expect = 2e-31
Identities = 92/524 (17%), Positives = 166/524 (31%), Gaps = 121/524 (23%)
Query: 145 ENIVSVLSEYTEQGYRVIALASRTLSIDDYKH---LNYMKREDIEKDLEFLGLIILENRL 201
E + G RV+ LS DY + L F GL+ + +
Sbjct: 546 EAFQTAYLSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPP 605
Query: 202 KPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPK 261
+ + + + A ++V+M+TGD+ TA ++A GII G
Sbjct: 606 RATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGS----------------- 648
Query: 262 VYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIR---DQMPELIPRI 318
+T + + A + G +L ++ E +
Sbjct: 649 -----------ETVEDIAARLRVPVDQVNRKDARACVINGM--QLKDMDPSELVEALRTH 695
Query: 319 IVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESSVA- 377
+FAR S QK +V Q+LG VA+ GDG ND AL+ A G+++ A S A
Sbjct: 696 --PEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAK 753
Query: 378 ---------SPFTSTVANISCVLRIIREGRAALVTSFGIF----KFMVLYSLC----EFF 420
F S V + +GR IF K + Y+L E
Sbjct: 754 NAADMILLDDNFASIVTG-------VEQGR-------LIFDNLKKS-IAYTLTKNIPELT 798
Query: 421 STMILYT---IDSNLTDFEFLYID--------IALVVN--------------------FA 449
++Y + L L+I+ ++L
Sbjct: 799 -PYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVNE 857
Query: 450 FFFGRNHAFSGPLTSETPLNSLFSYVTLLSMFFQLILMVSMQIISFIIVHKFAWFEPFVY 509
++ G + S Y T ++ L+ + H + +
Sbjct: 858 PLAAYSYFQIGAIQS---FAGFTDYFTAMAQEGWFPLLCVGLRPQWENHHLQDLQDSYGQ 914
Query: 510 TNAISYSCYENY-----AVFSISMFQYI-ILAITFSQGKPYRTPIYKNKLFILSIIIMTW 563
Y+ Y SI M Q +L + ++ ++N++ +++I+
Sbjct: 915 EWTFGQRLYQQYTCYTVFFISIEMCQIADVLIRKTRRLSAFQQGFFRNRILVIAIVFQVC 974
Query: 564 VCIYITLIPSEFIIQFLQLRF---PPNMQFPLIVIYLAICNFVL 604
+ ++ P + F P Q+ L+ + + FV
Sbjct: 975 IGCFLCYCP------GMPNIFNFMPIRFQWWLVPMPFGLLIFVY 1012
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 126 bits (319), Expect = 3e-30
Identities = 94/523 (17%), Positives = 163/523 (31%), Gaps = 120/523 (22%)
Query: 145 ENIVSVLSEYTEQGYRVIALASRTLSIDDYKH---LNYMKREDIEKDLEFLGLIILENRL 201
E + E G RV+ L D Y + + DL F+GL+ + +
Sbjct: 541 EAFQNAYLELGGLGERVLGFCHFALPEDKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPP 600
Query: 202 KPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPK 261
+ + + + A +KV+M+TGD+ TA ++AK GII G ++ A
Sbjct: 601 RAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLN------ 654
Query: 262 VYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIR---DQMPELIPRI 318
A V G +L + + +++
Sbjct: 655 ----------------------IPIGQVNPRDAKACVVHGS--DLKDLSTEVLDDILHY- 689
Query: 319 IVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESSVAS 378
+FAR S QK +V Q+ G VA+ GDG ND AL+ A G+++ + S V+
Sbjct: 690 -HTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSK 748
Query: 379 P----------FTSTVANISCVLRIIREGRAALVTSFGIF----KFMVLYSLC----EFF 420
F S V + EGR IF K + Y+L E
Sbjct: 749 QAADMILLDDNFASIVTG-------VEEGR-------LIFDNLKKS-IAYTLTSNIPEIT 793
Query: 421 STMILYT---IDSNLTDFEFLYID--------IALVV--------------------NFA 449
+++ + L L ID I+L
Sbjct: 794 -PFLVFIIGNVPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNE 852
Query: 450 FFFGRNHAFSGPLTSETPLNSLFSYVTLLSMF-FQLILMVSMQIISFIIVHKFAWFEPFV 508
+ G + + L FSY +L+ F + ++ ++
Sbjct: 853 RLISMAYGQIGMIQA---LGGFFSYFVILAENGFLPMDLIGKRVRWDDRWISDVEDSFGQ 909
Query: 509 YTNAISYSCYENYA----VFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWV 564
E SI + Q+ L I ++ KNK+ I + T +
Sbjct: 910 QWTYEQRKIVEFTCHTSFFISIVVVQWADLIICKTRRNSIFQQGMKNKILIFGLFEETAL 969
Query: 565 CIYITLIPSEFIIQFLQLRF---PPNMQFPLIVIYLAICNFVL 604
+++ P + P + ++ F+
Sbjct: 970 AAFLSYCP------GTDVALRMYPLKPSWWFCAFPYSLIIFLY 1006
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 123 bits (311), Expect = 2e-29
Identities = 71/478 (14%), Positives = 148/478 (30%), Gaps = 141/478 (29%)
Query: 145 ENIVSVLSEYTEQGYRVIALASRTLSIDDYKHLNYMKREDIEKDLEFLGLIILENRLKPQ 204
+ + ++E+ +G+R + +A R+ E E LG++ + +
Sbjct: 496 QAYKNKVAEFATRGFRSLGVA----------------RKRGEGSWEILGIMPCMDPPRHD 539
Query: 205 TEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYF 264
T + E K + + M+TGD + A +++ G+ G + + + G
Sbjct: 540 TYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGL---GTNIYNAERLGLGGGG------ 590
Query: 265 TVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAI 324
E+ +
Sbjct: 591 -----------------DMPGSEVY---------------------------DFVEAADG 606
Query: 325 FARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESSVASPFTST- 383
FA + K +V LQQ GY VAM GDG ND +L+ A GI++ S+
Sbjct: 607 FAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVE----------GSSD 656
Query: 384 VA-----------NISCVLRIIREGRA-----------ALVTSFGIFKFMVLYSLCEFFS 421
A + ++ ++ R + S + F+ L+ S
Sbjct: 657 AARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHLEIFLGLWIAILNRS 716
Query: 422 ---TMILYTIDSNL-TDFEFLYI--------------DIALVVNFAFFFGRNHAFSGPLT 463
++++ + D L I ++ + + G
Sbjct: 717 LNIELVVFI---AIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMSVLLG---------- 763
Query: 464 SETPLNSLFSYVTLLSMFFQLILMVSMQIISFIIVHKFAWFEPFVYTNAISYSCYENYAV 523
+ ++ +++T+ +M+ Q +Q +F + + + + + N + + N
Sbjct: 764 ---VVLAVGTWITVTTMYAQGENGGIVQ--NFGNMDEVLFLQISLTENWLIFITRANGPF 818
Query: 524 FSISMFQYIILAITFSQGKPYRTPIYKNKLFILSII-IMTWVCIYITLIPSEFIIQFL 580
+S + AI T F S I+ V I+I I+ +
Sbjct: 819 WSSIPSWQLSGAIFLVDI--LATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGV 874
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 113 bits (285), Expect = 4e-26
Identities = 62/232 (26%), Positives = 91/232 (39%), Gaps = 65/232 (28%)
Query: 145 ENIVSVLSEYT--EQGYRVIALASRTLSID--DYKHLNYMKREDIEKDLEFLGLIILENR 200
E I+SV+ E+ R +ALA+R + + + + E DL F+G++ +
Sbjct: 544 EKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGM--- 600
Query: 201 LKPQTEGV---IKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLK 257
L P + V I+ +DA ++V+MITGDN TAI++ + GI E V D
Sbjct: 601 LDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADR-------- 652
Query: 258 ECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMP--ELI 315
A TG+ E D +P E
Sbjct: 653 ----------------------------------------AYTGR--EF--DDLPLAEQR 668
Query: 316 PRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 367
+ FAR+ K ++V LQ AM GDG ND AL+ A GI
Sbjct: 669 -EACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGI 719
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
copper(II) transporter, MEMB protein, hydrolase; 1.59A
{Archaeoglobus fulgidus} PDB: 3sky_A*
Length = 280
Score = 61.7 bits (151), Expect = 1e-10
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 188 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 239
+ E G+I L +R++P++ I +LK +K +M+TGDN A VA+E G+
Sbjct: 132 NGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL 183
Score = 45.9 bits (110), Expect = 2e-05
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 331 DQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 367
+K + V E+QQ Y AM GDG ND AL A GI
Sbjct: 193 HEKAEKVKEVQQ-KYVTAMVGDGVNDAPALAQADVGI 228
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy
metal translocation; 2.20A {Sulfolobus solfataricus}
PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Length = 263
Score = 61.3 bits (150), Expect = 1e-10
Identities = 10/52 (19%), Positives = 28/52 (53%)
Query: 188 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 239
+ E + + + +P + +++LK+ +K+++++GD ++KE I
Sbjct: 124 NGEPIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI 175
Score = 50.1 bits (121), Expect = 7e-07
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 324 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 367
++ +S + K +++ +L+Q G V M GDG ND AL A +
Sbjct: 178 YYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSV 221
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell
membrane, copper transport, hydrolase, ION transport,
magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus
fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Length = 287
Score = 59.8 bits (146), Expect = 6e-10
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 188 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 239
+ G+I + + LK + ++ELK +KV MITGDN ++A ++++E +
Sbjct: 151 NGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL 202
Score = 42.5 bits (101), Expect = 2e-04
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 331 DQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 367
QK + V +LQ VA GDG ND AL A GI
Sbjct: 212 HQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLGI 247
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 60.2 bits (147), Expect = 1e-09
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 188 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 239
+ G+I + + LK + ++ELK +KV MITGDN ++A ++++E +
Sbjct: 445 NGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL 496
Score = 42.1 bits (100), Expect = 6e-04
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 324 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 367
+ A + QK + V +LQ VA GDG ND AL A GI
Sbjct: 499 VIAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLGI 541
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 60.3 bits (147), Expect = 2e-09
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 188 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 239
D + + L+++E+ +K T I EL+ + +++VM+TGD+ +TA +VA GI
Sbjct: 542 DGKTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGI 593
Score = 48.7 bits (117), Expect = 5e-06
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 324 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 367
+ A + + K ++V EL+ G VAM GDG ND AL A GI
Sbjct: 596 VVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGI 639
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 58.7 bits (143), Expect = 4e-09
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 188 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 239
+ G+I + + LK + ++ELK +KV MITGDN ++A ++++E +
Sbjct: 523 NGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL 574
Score = 41.4 bits (98), Expect = 0.001
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 331 DQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 367
QK + V +LQ VA GDG ND AL A GI
Sbjct: 584 HQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLGI 619
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 1e-08
Identities = 70/427 (16%), Positives = 133/427 (31%), Gaps = 137/427 (32%)
Query: 269 VSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARM 328
+ A T+ L++ E L + + ++ A +++Q +++P
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIA------SQLQEQFNKILP------EPTEGF 48
Query: 329 SSDQKQQLVLEL--QQLGYYVAMCGDGANDCGA----LRAA--------------HAGI- 367
++D + EL + LGY V+ + + G L HA
Sbjct: 49 AADDEPTTPAELVGKFLGY-VSSLVE-PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 368 SLS------------------EAESSVASPFTSTVANISCVLRIIREGRAALVTSFG--- 406
L A PF S + R + EG A LV FG
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN--SALFRAVGEGNAQLVAIFGGQG 164
Query: 407 ----IFKFMV-LYS-----LCEFFSTM--ILYTIDSNLTDFEFLY---IDI-------AL 444
F+ + LY + + L + D E ++ ++I +
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 445 VVNFAFFFGRNHAFSGPLTSETPLNSLFSYVTL----------LSMFFQLILMVSMQIIS 494
+ + + S PL + L YV L + + S +++
Sbjct: 225 TPDKDYL--LSIPISCPLIG---VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 495 -FIIVHKFAWFEPFVYTNA---------ISYSCYENYAVFSI--SMFQYIILAITFSQGK 542
I +W E F + + I CYE Y S+ S+ + ++ ++G
Sbjct: 280 AVAIAETDSW-ESF-FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED---SLENNEGV 334
Query: 543 PYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVIYLAICN- 601
P +P +LSI +T + + + P Q + +++ N
Sbjct: 335 P--SP-------MLSISNLTQEQV-------QDYVNKTNSHLPAGKQ-----VEISLVNG 373
Query: 602 ---FVLS 605
V+S
Sbjct: 374 AKNLVVS 380
Score = 52.0 bits (124), Expect = 7e-07
Identities = 56/306 (18%), Positives = 86/306 (28%), Gaps = 112/306 (36%)
Query: 34 SQA-------YENHEDSRKTRHYASVVPLQGKKLGAPIKHIQNTNEHVKLKHGMATCHSL 86
SQ Y+ + ++ + A G I I N +L
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKD--TYGFSILDIVINNPV-----------NL 1672
Query: 87 TLINGELSGDPL---DLKM-FEST--GWTLEEPNLKE------DCHYELPI--------- 125
T+ G G + M FE+ G E KE +
Sbjct: 1673 TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 126 -PAIVRPPSGDYQSVLISV------------PENIV----SVLSEYTEQGYRVIALASRT 168
PA+ L+ P + S L EY ALAS
Sbjct: 1733 QPALT----------LMEKAAFEDLKSKGLIPADATFAGHS-LGEYA-------ALASLA 1774
Query: 169 --LSIDDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDN 226
+SI+ + + R G+ P+ E R MI +
Sbjct: 1775 DVMSIESLVEVVF-YR----------GM--TMQVAVPRDEL-------GRSNYGMIAINP 1814
Query: 227 IQTAISVAKECGIIDPGETVVD-VSAVPGGLKE-----CP-KVYFTVSG-VSAIQTKAKK 278
+ A S ++E + VV+ V G L E + Y +G + A+ T
Sbjct: 1815 GRVAASFSQEAL-----QYVVERVGKRTGWLVEIVNYNVENQQYV-AAGDLRALDTVTNV 1868
Query: 279 LNYSKT 284
LN+ K
Sbjct: 1869 LNFIKL 1874
Score = 39.3 bits (91), Expect = 0.004
Identities = 44/230 (19%), Positives = 77/230 (33%), Gaps = 68/230 (29%)
Query: 11 EPNLKEDC--HYE-LPIPAI-VRPPSDSQ-----AYENHEDSRKTRHYAS--------VV 53
P++ ED + E +P P + + + Q N + S VV
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 54 ---P--LQG-----KKLGAPIKHIQNTNEHV--KLKHGM------ATCHS--LT------ 87
P L G +K AP Q+ KLK + HS L
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 88 ---LINGELSGDPLDLKM--FES-TGWTLEEPNLKEDCHYELPIPAIVRPPSGDYQSVLI 141
L+ +S + D+++ +++ G L L + + I+R P +++
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV--LSGSISERI-VDCIIRLPV-KWETTTQ 495
Query: 142 SVPENIV-------SVLSEYTEQ-----GYRVIALASRTLSIDD---YKH 176
+I+ S L T + G RVI + ++ DD +K
Sbjct: 496 FKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 36.2 bits (83), Expect = 0.044
Identities = 51/360 (14%), Positives = 107/360 (29%), Gaps = 109/360 (30%)
Query: 2 FESTGWTLEE---PNLKEDCHYELPIPAIVRPPSDSQAYENHEDSRKTRHY-ASV---VP 54
+ + TL E L + + + + + + + + Y S+ P
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGL--------NILEWLENPSNTPDKDYLLSIPISCP 239
Query: 55 LQGKKLGAPIKHIQNTNEHVKLKHGMATCHSLTLINGEL----SGDPLDLKMFESTGWTL 110
L I IQ L H + T L GEL G +TG
Sbjct: 240 L--------IGVIQ-------LAHYVVTAKLLGFTPGELRSYLKG---------ATG--- 272
Query: 111 EEPNLKEDCHYELPIPAIVRPPSGDYQSVLISVPENIVSVLSEYTEQGYR------VIAL 164
H + + A+ + ++S ++ ++ G R +L
Sbjct: 273 ---------HSQGLVTAVAIAETDSWESFF----VSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 165 ASRTLSIDDYKHLN----YM------KREDIEKDLEFLGLIILENRLKPQTEGVIKELKD 214
L D ++ M +E ++ + N P + V L +
Sbjct: 320 PPSILE-DSLENNEGVPSPMLSISNLTQEQVQDYVNKT------NSHLPAGKQVEISLVN 372
Query: 215 ARVKVVMITG---DNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSG--V 269
+V ++G +++ K G +D S +P + K+ F+ V
Sbjct: 373 GAKNLV-VSGPPQSLYGLNLTLRKAK--APSG---LDQSRIPFSER---KLKFSNRFLPV 423
Query: 270 SA------IQTKAKKLNYSKTEEELGLSSGAYKFAV----TGKSWELIRDQMPELIPRII 319
++ + + +N + + ++ + V G +R + RI+
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD---LRVLSGSISERIV 480
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 2e-08
Identities = 86/595 (14%), Positives = 177/595 (29%), Gaps = 154/595 (25%)
Query: 136 YQSVLISVPENIVSVLS-EYTEQGYRVIALASRTLSIDDYKHLNYMKREDIEKDLEFLGL 194
Y+ +L + V + + + I LS ++ H+ + +D L
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSI------LSKEEIDHI--IMSKDAVSGTLRL-F 68
Query: 195 IILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPG 254
L ++ + + ++E+ K +M I+T E P
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLM---SPIKT------EQ--RQPSMMTRMYIEQRD 117
Query: 255 GLKECPKVY--FTVS---GVSAIQTKAKKLNYSKTEEELGLS--SGAYKFAVTGKSW--- 304
L +V+ + VS ++ +L + + + + G+ GK+W
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLEL---RPAKNVLIDGVLGS------GKTWVAL 168
Query: 305 ELIRDQMPELIPRIIVKGAIF-ARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAA 363
++ + IF + + + VLE+ Q Y + + ++
Sbjct: 169 DVCLSYKVQCKM----DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR---SDHSS 221
Query: 364 HAGISLSEAESSVASPFTSTVANIS-CVLRIIREGRAALVTSFGIFKFMVLYSLCEFFST 422
+ + + ++ + S VL ++ + +F + C
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK--AWNAFNL--------SC----K 267
Query: 423 MILYTIDSNLTDFEFLYIDIALVVNFAFFFGRNHAFSGPLTSETPLNSLFSYVTLLSMFF 482
++L T +TDF L +H S LT + SL L
Sbjct: 268 ILLTTRFKQVTDF--------LSAATTTHISLDH-HSMTLTPDEVK-SLLLKY--LDCRP 315
Query: 483 QLI---------LMVSMQIISFIIVHKFAWFEPFVYTN------AISYS----------- 516
Q + +S+ I I W + + + N I S
Sbjct: 316 QDLPREVLTTNPRRLSI-IAESIRDGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 517 CYENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWV-CIYIT--LIPS 573
++ +VF P I L ++ W I ++ +
Sbjct: 374 MFDRLSVF------------------PPSAHIPTILLSLI------WFDVIKSDVMVVVN 409
Query: 574 EFIIQFLQLRFPPNMQFPLIVIYLAICNFVLSLF-IENFII-HYLLMIKFKRWS------ 625
+ L + P + IYL + + + + + I+ HY + F
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 626 NDYKCCKYIG-----IENE----------LDSNYMWPKLSKQAPVLNTSPSAESL 665
+ Y +IG IE+ LD ++ K+ + N S S +
Sbjct: 470 DQY-FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide
binding, ATP binding, MGTA, membra protein, cell inner
membrane; 1.60A {Escherichia coli}
Length = 170
Score = 45.3 bits (108), Expect = 1e-05
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 145 ENIVSVLSEYTEQGYRVIALASRTLSIDDYKHLNYMKREDIEKDLEFLGLI 195
I V QG RV+A+A++ L + + + E DL G I
Sbjct: 115 RKIKRVTDTLNRQGLRVVAVATKYLPAREGDY-----QRADESDLILEGYI 160
>1rku_A Homoserine kinase; phosphoserine phosphatase,
phosphoserine:homoserine phosphotransferase, THRH,
phosphoserine phosphoryl donor; 1.47A {Pseudomonas
aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A
Length = 206
Score = 44.5 bits (106), Expect = 3e-05
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 331 DQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 367
D K+Q V+ + L Y V GD ND L AHAGI
Sbjct: 132 DPKRQSVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGI 168
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl,
hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB:
1l8l_A* 1l8o_A
Length = 225
Score = 39.2 bits (92), Expect = 0.002
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 320 VKGAIFARMSSDQKQQLVLEL-QQLGY-YVAMCGDGANDCGALRAAHAGISLSEAES--S 375
S K +++ L ++ + + M GDGA D A A A I
Sbjct: 148 ETQPT---AESGGKGKVIKLLKEKFHFKKIIMIGDGATDMEACPPADAFIGFGGNVIRQQ 204
Query: 376 VASPFTSTVANISCVLRIIRE 396
V + + +L + E
Sbjct: 205 VKDNAKWYITDFVELLGELEE 225
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase;
2633731, structural genomics, joint center for
structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis}
SCOP: c.108.1.20
Length = 236
Score = 36.7 bits (85), Expect = 0.014
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 333 KQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 367
K ++ EL + Y+ M GD D A + +
Sbjct: 152 KPSVIHELSEPNQYIIMIGDSVTDVEAAKLSDLCF 186
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural
genomics, PSI, protein STRU initiative, nysgrc; 2.30A
{Vibrio cholerae}
Length = 335
Score = 36.6 bits (85), Expect = 0.022
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 320 VKGAIFARMSSDQKQQLVLEL-QQLGY---YVAMCGDGANDCGALRAAHAGI 367
V G + +S+ K ++L L QQ GDGAND + AA G+
Sbjct: 236 VLGEV---VSAQTKADILLTLAQQYDVEIHNTVAVGDGANDLVMMAAAGLGV 284
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site,
enzyme function initiativ; 2.27A {Salmonella enterica
subsp}
Length = 317
Score = 34.7 bits (80), Expect = 0.072
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 320 VKGAIFARMSSDQKQQLVLEL-QQLGY---YVAMCGDGANDCGALRAAHAGI 367
+ I M++ K+Q +++L +L + CGDGAND L A GI
Sbjct: 237 ITLPI---MNAANKKQTLVDLAARLNIATENIIACGDGANDLPMLEHAGTGI 285
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis,
magnesium, transferase, structural genomics, STRU
genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB:
3eoe_A
Length = 511
Score = 35.2 bits (82), Expect = 0.073
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 217 VKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 255
V T I+ AI VAKE ++ GE++V V +
Sbjct: 459 VPSFQGTDHVIRNAIVVAKERELVTEGESIVAVHGMKEE 497
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle,
B-hairpin, structural genomics, BSGC structure funded by
NIH; 1.48A {Methanocaldococcus jannaschii} SCOP:
c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Length = 211
Score = 34.4 bits (80), Expect = 0.075
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 320 VKGAIFARMSSDQKQQLVLEL-QQLGYY---VAMCGDGANDCGALRAAHAGI 367
V+G + + + K +++ ++ + G GDGAND + A I
Sbjct: 134 VEGEV---LKENAKGEILEKIAKIEGINLEDTVAVGDGANDISMFKKAGLKI 182
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine
phosphatase, protein structure initiative, structural
genomics; 2.40A {Helicobacter pylori}
Length = 217
Score = 34.1 bits (79), Expect = 0.096
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 320 VKGAIFARMSSDQKQQLVLEL-QQLGY---YVAMCGDGANDCGALRAAHAGI 367
V G + M S K +++L L + L + GDGAND + AH I
Sbjct: 133 VTGHM---MFSHSKGEMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKI 181
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET:
FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1
c.1.12.1 c.49.1.1 PDB: 1a3x_A
Length = 500
Score = 34.5 bits (80), Expect = 0.10
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 227 IQTAISVAKECGIIDPGETVVDVSAVPGG 255
I I AKE GI+ G+T V + G
Sbjct: 460 INFGIEKAKEFGILKKGDTYVSIQGFKAG 488
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric
enzyme, alternative splicing, glycolysis, magnesium,
metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo
sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A 3g2g_A
1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A 1a49_A*
1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A*
2vgg_A* ...
Length = 550
Score = 34.6 bits (80), Expect = 0.11
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 223 TGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 255
+ A++V K G G+ V+ ++ G
Sbjct: 505 VDLRVNFAMNVGKARGFFKKGDVVIVLTGWRPG 537
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery;
1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1
PDB: 1pky_A 1e0u_A
Length = 470
Score = 34.0 bits (79), Expect = 0.15
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 223 TGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 255
T D + +A + G+ G+ VV VS
Sbjct: 426 TDDFYRLGKELALQSGLAHKGDVVVMVSGALVP 458
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase,
magnesium, transferase, structural genomi structural
genomics consortium; HET: CIT; 2.64A {Cryptosporidium
parvum}
Length = 534
Score = 33.8 bits (78), Expect = 0.19
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 223 TGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 255
+ I A+++AKE +I+ G+ + V V
Sbjct: 488 SEVVISNALALAKEESLIESGDFAIAVHGVKES 520
>3fvv_A Uncharacterized protein; unknown function, structural genomics,
PSI,MCSG, protein STR initiative, midwest center for
structural genomics; 2.10A {Bordetella pertussis}
Length = 232
Score = 33.1 bits (76), Expect = 0.20
Identities = 12/101 (11%), Positives = 30/101 (29%), Gaps = 6/101 (5%)
Query: 145 ENIVSVLSEYTEQGYRVIALASR-TLSIDDYKHLNY-----MKREDIEKDLEFLGLIILE 198
+E + ++ +R L+ + ++ E ++
Sbjct: 31 TGRAGDPAEARRRNDDLMERYNRGELTAEQAAEFMLGLLAAHSPVELAAWHEEFMRDVIR 90
Query: 199 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 239
L Q V++ A ++T N +A+ G+
Sbjct: 91 PSLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGV 131
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE
consortium, SGC, transferase; 2.70A {Plasmodium
falciparum 3D7}
Length = 520
Score = 33.7 bits (78), Expect = 0.22
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 223 TGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 255
T I+ AI +AK+ + G++V+ + +
Sbjct: 474 TDIVIRNAIEIAKQRNMAKVGDSVIAIHGIKEE 506
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics,
structural genomics center for infectious disease,
hydrolas; 2.05A {Mycobacterium avium}
Length = 415
Score = 32.9 bits (75), Expect = 0.33
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 320 VKGAIFARMSSDQKQQLVLEL-QQLGY---YVAMCGDGANDCGALRAAHAGI 367
V G I + K + E Q+ G GDGAND L AA GI
Sbjct: 314 VVGPI---IDRAGKATALREFAQRAGVPMAQTVAVGDGANDIDMLAAAGLGI 362
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A
{Staphylococcus aureus subsp} PDB: 3t07_A*
Length = 606
Score = 32.6 bits (75), Expect = 0.50
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 223 TGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 255
T + A++ A E G + G+ ++ + VP G
Sbjct: 448 TDALLNNAVATAVETGRVTNGDLIIITAGVPTG 480
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase,
allosteric enzyme, binding, glycolysis, magnesium,
metal-binding, NUCL binding; 2.00A {Leishmania mexicana}
PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A*
3qv6_A* 3qv7_D* 3qv8_D* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Length = 499
Score = 32.2 bits (74), Expect = 0.55
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 207 GVIKELKDARVKVVMITGDN-IQTAISVAKECGIIDPGETVVDVSAVPGG 255
GV DA ++ + + AK G + G+ V + A
Sbjct: 437 GVESVFFDADKLGHDEGKEHRVAAGVEFAKSKGYVQTGDYCVVIHADHKV 486
>3roj_A D-fructose 1,6-bisphosphatase class 2/sedoheptulo bisphosphatase;
fructose-1,6-/sedoheptulose-1,7-bisphosphatase,
hydrolase; HET: AMP GOL; 2.30A {Synechocystis} PDB:
3rpl_A*
Length = 379
Score = 31.9 bits (73), Expect = 0.68
Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 187 KDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMIT-GDNIQTAISVAKECGIID 241
+ +E L +++++ +P+ + +I+E+++A +V +I+ GD + AIS A I
Sbjct: 198 RSIEELVVVVMD---RPRHKELIQEIRNAGARVRLISDGD-VSAAISCAFSGTNIH 249
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase,
2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A
{Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Length = 328
Score = 31.5 bits (72), Expect = 0.75
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 182 REDIEK-----DLEF-LGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAK 235
+I + D F + L +L + + +A ++VV G++ I+ +
Sbjct: 56 AAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAGNDPGEHIAEFR 115
Query: 236 ECGII 240
G+
Sbjct: 116 RHGVK 120
>2x5p_A FBA2, fibronectin binding protein; protein binding; 1.60A
{Streptococcus pyogenes}
Length = 121
Score = 30.3 bits (68), Expect = 0.79
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 210 KELKDARVKVVMITGDNIQTAISVAK-ECGIIDPGE-TVVDVSAVPGGLKECPKVYFTVS 267
KEL A +++ +G I T IS + + + PG+ T V+ +A P G + + FTV+
Sbjct: 40 KELAGATMELRDSSGKTISTWISDGQVKDFYLMPGKYTFVETAA-PDGYEVATAITFTVN 98
Query: 268 GVSAIQTKAKKLN 280
+ K
Sbjct: 99 EQGQVTVNGKATK 111
>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S
genomics, national institute of allergy and infectious
DISE (niaid); 1.70A {Francisella tularensis subsp}
Length = 219
Score = 30.7 bits (70), Expect = 1.0
Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 1/48 (2%)
Query: 320 VKGAIFARMSSDQK-QQLVLELQQLGYYVAMCGDGANDCGALRAAHAG 366
K + + D K + V GDG D +A
Sbjct: 139 FKELDNSNGACDSKLSAFDKAKGLIDGEVIAIGDGYTDYQLYEKGYAT 186
>3big_A Fructose-1,6-bisphosphatase class II GLPX; carbohydrate metabolism,
hydrolase manganese; 1.85A {Escherichia coli} PDB:
2r8t_A 3bih_A 1ni9_A 3d1r_A*
Length = 338
Score = 31.1 bits (71), Expect = 1.2
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 187 KDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMIT-GDNIQTAISVAKECGIID 241
K L L + IL KP+ + VI E++ V+V I GD + +I +D
Sbjct: 154 KPLSELTVTILA---KPRHDAVIAEMQQLGVRVFAIPDGD-VAASILTCMPDSEVD 205
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus
stearothermophilus}
Length = 587
Score = 31.0 bits (71), Expect = 1.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 223 TGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 255
T + + A+ A G++ G+ VV + VP G
Sbjct: 429 TDEMLDVAVDAAVRSGLVKHGDLVVITAGVPVG 461
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase,
enzyme function initiative, EFI, structural genomics;
1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Length = 279
Score = 30.6 bits (70), Expect = 1.7
Identities = 5/50 (10%), Positives = 23/50 (46%)
Query: 198 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVV 247
+ + + + +++ +++V+ +G + +A E + + G ++
Sbjct: 20 KKEISSRNRETLIRIQEQGIRLVLASGRPTYGIVPLANELRMNEFGGFIL 69
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4
carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum}
SCOP: c.6.2.3
Length = 254
Score = 30.1 bits (68), Expect = 2.1
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 30/105 (28%)
Query: 126 PAIVRPPSGDYQSVLISVPENIVSVLSEYTEQGYRVIALASRTLSID--DYKHLNYMK-- 181
P +R P + + GY +I ++D DY++
Sbjct: 138 PKYMRAPYLSCDA----------GCQGDLGGLGYHII-----DTNLDTKDYENNKPETTH 182
Query: 182 ------REDIEKDLEFLGLIILENRLKPQT-----EGVIKELKDA 215
++ D+ I+L + + QT + +I LK
Sbjct: 183 LSAEKFNNELSADVGANSYIVLSHDVHEQTVVSLTQKLIDTLKSK 227
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha
sandwich. stucture contains A magnesium ION., PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: c.108.1.10
Length = 282
Score = 30.2 bits (69), Expect = 2.3
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 198 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVV 247
++ + P + I + V VV+ TG + KE + PG+ +
Sbjct: 20 DHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCI 69
>3gfz_A Klebsiella pneumoniae BLRP1; TIM-barrel, EAL domain, BLUF domain,
hydrolase, signaling PR; HET: C2E FMN; 2.05A {Klebsiella
pneumoniae subsp} PDB: 3gfy_A* 3gfx_A* 3gg0_A* 3gg1_A*
2kb2_A*
Length = 413
Score = 29.6 bits (67), Expect = 3.2
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 12/49 (24%)
Query: 138 SVLISVPENIVSVLSEYTEQGYRVIALASRTLSIDD----YKHLNYMKR 182
+ +I+ + VL G + L+IDD Y L+ + R
Sbjct: 284 TEVITCFDQFRKVLKALRVAGMK--------LAIDDFGAGYSGLSLLTR 324
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC
transporter, transport protein; HET: TPS; 2.25A
{Escherichia coli}
Length = 330
Score = 29.5 bits (66), Expect = 3.3
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 220 VMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL 279
V++ DN + A + G+ D VPGG V F + + K K
Sbjct: 81 VVLGLDN--NLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLK 138
Query: 280 NYSKTEEELGLSSGAYKFAV 299
N ++ +EL S ++
Sbjct: 139 NPPQSLKELVESDQNWRVIY 158
>2qya_A Uncharacterized conserved protein; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.17A
{Methanopyrus kandleri AV19}
Length = 124
Score = 28.4 bits (63), Expect = 3.9
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 193 GLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAV 252
G + +R + ++E +D + + G+ A SV + G+ + + ++ V
Sbjct: 47 GKSMEPDRAAKKIREAVQEYEDEKTVAINALGEL---ACSVVVDAGLARE-DEIGELGGV 102
Query: 253 P 253
P
Sbjct: 103 P 103
>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos
phosphatase; hydrolase; 1.92A {Homo sapiens}
Length = 271
Score = 29.1 bits (66), Expect = 4.1
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 202 KPQT---EGVIKELKDARVKVVMITGDNIQTAISVAKECGI 239
KP + ++ + + VMI GD+I + A+ CG+
Sbjct: 190 KPSPEFFKSALQAIGVEAHQAVMI-GDDIVGDVGGAQRCGM 229
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Length = 230
Score = 28.8 bits (65), Expect = 4.3
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 27/101 (26%)
Query: 126 PAIVRPPSGDYQSVLISVPENIVSVLSEYTEQGYRVIALASRTLSID--DYKHLNYMK-- 181
PA +RPP + VL + YRVI + S+D DY++ +
Sbjct: 124 PAYMRPPYLETNE----------LVLQVMRDLDYRVI-----SASVDTKDYENQDADAII 168
Query: 182 ---REDIEKDLEFLGLIILENRLKPQT-----EGVIKELKD 214
+ L+ G I+L + + T E +++E+
Sbjct: 169 NTSFQLFLDQLDAGGNIVLAHDIHYWTVASLAERMLQEVNA 209
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Length = 401
Score = 28.9 bits (64), Expect = 5.5
Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 3/99 (3%)
Query: 188 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQT---AISVAKECGIIDPGE 244
D F G+ + +++ VK ++TG +I AI + + P +
Sbjct: 23 DPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGSSIAESQSAIELVSSVKDLSPLK 82
Query: 245 TVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSK 283
+ P + E ++I + Y++
Sbjct: 83 LYHTIGVHPCCVNEFADASQGDKASASIDNPSMDEAYNE 121
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Length = 301
Score = 28.8 bits (65), Expect = 6.2
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 188 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQT---AISVAKE 236
D F G+ + + + VI + VK MITG N+Q A+ +A+
Sbjct: 12 DPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHLAQT 63
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural
genomics, PSI-biology, protein structure initiative; NMR
{Thermotoga maritima}
Length = 106
Score = 27.1 bits (61), Expect = 6.5
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 25/77 (32%)
Query: 208 VIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVS 267
+++L+D R+K +T + V++S + VY +
Sbjct: 22 ALQQLRDPRLKKDFVT---F-----------------SRVELS---KDKRYA-DVYVSFL 57
Query: 268 GVSAIQTKAKK-LNYSK 283
G + + + LN +K
Sbjct: 58 GTPEERKETVEILNRAK 74
>3r9p_A ACKA; ssgcid, seattle structural genomics center for infectious DI
acetate kinase, transferase; HET: PGE; 1.90A
{Mycobacterium avium subsp} PDB: 3p4i_A 4dq8_A
Length = 391
Score = 28.6 bits (65), Expect = 7.1
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 182 REDIEKDLEFLGLIILE--NRLKPQTEGVIKELKDARVKVVMI 222
R D +E LG+++ E N + I D+ + V+++
Sbjct: 332 RRDAVSGMEELGIVLDERRNLAGGKGARQI-SADDSPITVLVV 373
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket,
two component system; 1.90A {Bacillus subtilis} SCOP:
c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A
2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Length = 124
Score = 27.5 bits (62), Expect = 7.3
Identities = 17/94 (18%), Positives = 43/94 (45%), Gaps = 20/94 (21%)
Query: 145 ENIVSVLSEY-TEQGYRVIALASRTLSIDDYKHLNYMKREDIEKDLEFLGLIILENRLKP 203
I +L+E ++GY+ A + + L+ + +E + L++L+ ++ P
Sbjct: 13 SGIRILLNEVFNKEGYQTFQAA------NGLQALDIVTKERPD-------LVLLDMKI-P 58
Query: 204 QTEG--VIKELK--DARVKVVMITG-DNIQTAIS 232
+G ++K +K D ++V+++T +
Sbjct: 59 GMDGIEILKRMKVIDENIRVIIMTAYGELDMIQE 92
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
unknown function, HAD superfamily hydro PSI-2; 1.55A
{Streptococcus agalactiae serogroup V} PDB: 1ys9_A
1wvi_A 1ydf_A
Length = 264
Score = 28.3 bits (64), Expect = 7.3
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 202 KPQT---EGVIKELKDARVKVVMITGDNIQTAISVAKECGI 239
KP ++ L R + VM+ GDN T I I
Sbjct: 182 KPNAIIMNKALEILNIPRNQAVMV-GDNYLTDIMAGINNDI 221
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A
2iex_A
Length = 289
Score = 28.3 bits (64), Expect = 7.3
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 20/58 (34%)
Query: 183 EDI--EKDLEFLGLIILENR------LKPQTEGVIKELKDA--------RVKVVMITG 224
EDI EK + + I + NR +P T +KE+ A + V+++TG
Sbjct: 27 EDIRYEKSTDGIAKITI-NRPQVRNAFRPLT---VKEMIQALADARYDDNIGVIILTG 80
>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein,
struc genomics, PSI, protein structure initiative; 2.80A
{Enterococcus faecalis} SCOP: c.108.1.14
Length = 264
Score = 28.3 bits (64), Expect = 7.5
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 202 KPQT---EGVIKELKDARVKVVMITGDNIQTAISVAKECGI 239
KP+ E I L + +V+M+ GDN +T I + GI
Sbjct: 183 KPKAIIMERAIAHLGVEKEQVIMV-GDNYETDIQSGIQNGI 222
>1pa4_A Probable ribosome-binding factor A; structural genomics, distant
homology, BSGC structure funded by NIH, protein
structure initiative, PSI; NMR {Mycoplasma pneumoniae}
SCOP: d.52.7.1
Length = 116
Score = 27.2 bits (61), Expect = 7.6
Identities = 14/76 (18%), Positives = 19/76 (25%), Gaps = 26/76 (34%)
Query: 208 VIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVS 267
VI E+ + VK +T V +S L VY
Sbjct: 21 VIHEIYNETVKTGHVTH----------------------VKLS---DDLLHV-TVYLDCY 54
Query: 268 GVSAIQTKAKKLNYSK 283
I N +K
Sbjct: 55 NREQIDRVVGAFNQAK 70
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
genomics center for infect disease, dysentery, liver
abcess; 1.95A {Entamoeba histolytica hm-1}
Length = 325
Score = 28.5 bits (64), Expect = 7.8
Identities = 7/52 (13%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 188 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQT---AISVAKE 236
D + G ++ + + V++ + + ++IT + AI + +
Sbjct: 37 DDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSGCLNDFKKAIEIINK 88
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG,
protein structure initiative, joint center for
structural G hydrolase; 2.40A {Thermotoga maritima}
SCOP: c.108.1.14 PDB: 1pw5_A*
Length = 271
Score = 28.3 bits (64), Expect = 8.1
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 202 KPQT---EGVIKELKDARVKVVMITGDNIQTAISVAKECGI 239
KP + + ++ + ++ M+ GD + T + + K GI
Sbjct: 195 KPNPLVVDVISEKFGVPKERMAMV-GDRLYTDVKLGKNAGI 234
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural
genomics, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI-2; 1.72A {Homo sapiens} PDB:
2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Length = 306
Score = 28.4 bits (64), Expect = 8.1
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 202 KPQT---EGVIKELKDARVKVVMITGDNIQTAISVAKECGI 239
KP E + + + +M+ GD ++T I CG+
Sbjct: 215 KPSPYMFECITENFSIDPARTLMV-GDRLETDILFGHRCGM 254
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG,
unknown function; HET: MSE; 1.85A {Bacillus subtilis}
Length = 290
Score = 28.3 bits (64), Expect = 8.3
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 203 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDP 242
T+ I+ +K + V ++T + ++A +AK +
Sbjct: 26 QATKDAIEYVKKKGIYVTLVTNRHFRSAQKIAKSLKLDAK 65
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel,
allosteric modulation, phenylethanolamine,
N-glycosylation, extracellular; HET: NAG BMA MAN FUC
QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A*
3jpy_A*
Length = 364
Score = 28.2 bits (62), Expect = 9.7
Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 4/112 (3%)
Query: 147 IVSVLSEYTEQGYRVIALASRTLSIDDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTE 206
+++++ EY Y + + D+ + E+ E +++L+ L
Sbjct: 127 MLNIMEEY--DWYIFSIVTTYFPGYQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDS 184
Query: 207 GVIKELKDARVKVVMI--TGDNIQTAISVAKECGIIDPGETVVDVSAVPGGL 256
+ +LK + ++++ T + VA G+ G T + S V G
Sbjct: 185 KIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDT 236
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.410
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,166,034
Number of extensions: 622049
Number of successful extensions: 1472
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1451
Number of HSP's successfully gapped: 97
Length of query: 674
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 574
Effective length of database: 3,909,693
Effective search space: 2244163782
Effective search space used: 2244163782
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.4 bits)