RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6090
(674 letters)
>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic
domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 168
Score = 89.1 bits (220), Expect = 3e-21
Identities = 48/212 (22%), Positives = 74/212 (34%), Gaps = 53/212 (25%)
Query: 188 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVV 247
D + + + G I+ +DA ++V+MITGDN TAI++ + GI E V
Sbjct: 8 DKTGTLTTNQLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVA 67
Query: 248 DVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELI 307
D + TG+ ++ +
Sbjct: 68 DRA------------------------------------------------YTGREFDDL 79
Query: 308 RDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 367
R FAR+ K ++V LQ AM GDG ND AL+ A GI
Sbjct: 80 PLAEQREACRRAC---CFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGI 136
Query: 368 SLSEAE--SSVASPFTSTVANISCVLRIIREG 397
++ + AS N S ++ + EG
Sbjct: 137 AMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 168
>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546)
{Staphylococcus aureus [TaxId: 1280]}
Length = 380
Score = 64.1 bits (155), Expect = 2e-11
Identities = 24/223 (10%), Positives = 52/223 (23%), Gaps = 55/223 (24%)
Query: 145 ENIVSVLSEYTEQGYRVIALASRTLSIDDYKHLNYMKREDIEKDLEFLGLIILENRLK-- 202
++ L ++ Y+ L S+ + K + G I E L+
Sbjct: 167 FSLKGALWTLAQEVYQEWYLGSKLYEDVEKKI---------ARTTFKTGYIYQEIILRPV 217
Query: 203 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKV 262
+ + ++ +LK A ++ + TG + + G++ E
Sbjct: 218 DEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIA---------TASD 268
Query: 263 YFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKG 322
+ K N P +
Sbjct: 269 VLEAENMYPQARPLGKPN-----------------------------------PFSYIAA 293
Query: 323 AIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHA 365
+ + V + GD D + + A
Sbjct: 294 LYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGA 336
>d1q3ia_ d.220.1.1 (A:) Sodium/potassium-transporting ATPase alpha
chain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 214
Score = 46.8 bits (110), Expect = 2e-06
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 134 GDYQSVLISVPENIVSVLSEYTEQGYRVIALASRTLSIDDYKH---LNYMKREDIEKDLE 190
G + + + + E G RV+ L + + + + L
Sbjct: 140 GKEIPLDKEMQDAFQNAYLELGGLGERVLGFCQLNLPSGKFPRGFKFDTDELNFPTEKLC 199
Query: 191 FLGLIILE 198
F+GL+ +
Sbjct: 200 FVGLMSMI 207
>d1wpga3 d.220.1.1 (A:361-599) Calcium ATPase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 239
Score = 46.4 bits (109), Expect = 3e-06
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 153 EYTEQGYRVIALASRTLSIDDYKHL--NYMKREDIEKDLEFLGLI 195
R +ALA+R + + + + + E DL F+G++
Sbjct: 193 GTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVV 237
>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 45.4 bits (106), Expect = 9e-06
Identities = 24/212 (11%), Positives = 63/212 (29%), Gaps = 11/212 (5%)
Query: 194 LIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVP 253
+ + + I+ + + ++++TG+ +Q A + + G P +
Sbjct: 13 ITYPNRMIHEKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTSGPVVAEDGGAISY 72
Query: 254 GGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPE 313
+ K+ ++T + + E +R+ + E
Sbjct: 73 KKKRIFLASMDEE--WILWNEIRKRFPNARTSYTMPDRRAGLVIMRETINVETVREIINE 130
Query: 314 LIPR-IIVKGAIFARMSSDQKQQLVLELQQLGYY------VAMCGDGANDCGALRAAHAG 366
L + V + + + + VA GDG ND A +
Sbjct: 131 LNLNLVAVDSGFAIHVKKPWINKGSGIEKASEFLGIKPKEVAHVGDGENDLDAFKVVGYK 190
Query: 367 ISLSEAESSV--ASPFTSTVANISCVLRIIRE 396
+++++A + + + + I
Sbjct: 191 VAVAQAPKILKENADYVTKKEYGEGGAEAIYH 222
>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 225
Score = 43.0 bits (100), Expect = 5e-05
Identities = 27/210 (12%), Positives = 69/210 (32%), Gaps = 9/210 (4%)
Query: 194 LIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVP 253
L + + + I+ + + V +++G+ I ++ GI P + +
Sbjct: 14 LTDRDRLISTKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGINGP--VFGENGGIM 71
Query: 254 GGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPE 313
K +F+ G + + K ++ + F + + + +R +
Sbjct: 72 FDNDGSIKKFFSNEGTNKFLEEMSKRTSMRSILTNRWREASTGFDIDPEDVDYVRKEAES 131
Query: 314 LIPRIIVKGAIFARMSSDQKQQLVLELQQLGYY-----VAMCGDGANDCGALRAAHAGIS 368
I G + M+ + + + + Y + + GD ND +
Sbjct: 132 RGFVIFYSGYSWHLMNRGEDKAFAVNKLKEMYSLEYDEILVIGDSNNDMPMFQLPVRKAC 191
Query: 369 LSEAESSV--ASPFTSTVANISCVLRIIRE 396
+ A ++ S F S + + +I +
Sbjct: 192 PANATDNIKAVSDFVSDYSYGEEIGQIFKH 221
>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 135
Score = 41.6 bits (97), Expect = 5e-05
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 315 IPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAE- 373
I R + + A + QK + V +LQ VA GDG ND AL A GI++
Sbjct: 54 ISRELNLDLVIAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLGIAVGSGSD 112
Query: 374 -SSVASPFTSTVANISCVLRIIR 395
+ + ++ V+ I+
Sbjct: 113 VAVESGDIVLIRDDLRDVVAAIQ 135
Score = 40.1 bits (93), Expect = 1e-04
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 188 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKEC 237
D + LK + ++ELK +KV MITGDN ++A ++++E
Sbjct: 9 DKTGTLTKGKPDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISREL 58
>d2feaa1 c.108.1.20 (A:2-227)
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}
Length = 226
Score = 36.5 bits (83), Expect = 0.006
Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 4/97 (4%)
Query: 305 ELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAH 364
D I + K ++ EL + Y+ M GD D A + +
Sbjct: 122 HASFDNDYIHIDWPHSCKGTCSNQCGCCKPSVIHELSEPNQYIIMIGDSVTDVEAAKLSD 181
Query: 365 AGI---SLSEAESSVASPFTSTVANISCVLRIIREGR 398
L + + + I +
Sbjct: 182 LCFARDYLLNECREQNLNHL-PYQDFYEIRKEIENVK 217
>d1e0ta3 c.49.1.1 (A:354-470) Pyruvate kinase, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 117
Score = 31.8 bits (72), Expect = 0.065
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 223 TGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 255
T D + +A + G+ G+ VV VS
Sbjct: 73 TDDFYRLGKELALQSGLAHKGDVVVMVSGALVP 105
>d1a3xa3 c.49.1.1 (A:367-500) Pyruvate kinase, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 31.8 bits (72), Expect = 0.11
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 227 IQTAISVAKECGIIDPGETVVDVSAVPGG 255
I I AKE GI+ G+T V + G
Sbjct: 94 INFGIEKAKEFGILKKGDTYVSIQGFKAG 122
>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli
[TaxId: 562]}
Length = 271
Score = 32.6 bits (73), Expect = 0.13
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 198 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVV 247
++ + P + I + V VV+ TG + KE + PG+ +
Sbjct: 19 DHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCI 68
>d2vgba3 c.49.1.1 (A:440-573) Pyruvate kinase, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 31.1 bits (70), Expect = 0.17
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 207 GVIKEL--KDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 255
GV L + +Q I K G + G+ V+ V+ G
Sbjct: 72 GVFPLLYREPPEAIWADDVDRRVQFGIESGKLRGFLRVGDLVIVVTGWRPG 122
>d2g50a3 c.49.1.1 (A:396-530) Pyruvate kinase, C-terminal domain
{Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 135
Score = 31.2 bits (70), Expect = 0.19
Identities = 7/43 (16%), Positives = 15/43 (34%)
Query: 213 KDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 255
+ + A++V K G G+ V+ ++ G
Sbjct: 80 DPVQEAWAEDVDLRVNLAMNVGKARGFFKKGDVVIVLTGWRPG 122
>d1pkla3 c.49.1.1 (A:358-498) Pyruvate kinase, C-terminal domain
{Leishmania mexicana [TaxId: 5665]}
Length = 141
Score = 29.6 bits (66), Expect = 0.56
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 223 TGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 255
+ + AK G + G+ V + A
Sbjct: 96 KEHRVAAGVEFAKSKGYVQTGDYCVVIHADHKV 128
>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 217
Score = 29.9 bits (66), Expect = 0.69
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 319 IVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 367
+ +L+ E + M GDGA D A A A I
Sbjct: 143 DETQPTAESGGKGKVIKLLKEKFHFKKII-MIGDGATDMEACPPADAFI 190
>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 206
Score = 29.4 bits (65), Expect = 1.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 340 LQQLGYYVAMCGDGANDCGALRAAHAGI 367
+ L Y V GD ND L AHAGI
Sbjct: 141 FKSLYYRVIAAGDSYNDTTMLSEAHAGI 168
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 29.5 bits (65), Expect = 1.3
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 202 KPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDP 242
+P+ +ELK +K V+ +G+ IS E
Sbjct: 22 QPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEIS 62
>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax
[TaxId: 5855]}
Length = 283
Score = 28.8 bits (63), Expect = 2.0
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 198 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPG 243
+ ++ + IKE + V + TG + +S E +
Sbjct: 26 DIKVPSENIDAIKEAIEKGYMVSICTGRSKVGILSAFGEENLKKMN 71
>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus
subtilis [TaxId: 1423]}
Length = 285
Score = 28.7 bits (63), Expect = 2.3
Identities = 8/45 (17%), Positives = 23/45 (51%)
Query: 198 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDP 242
++++ + E +++ + ++VV+ TG +S+ + GI
Sbjct: 16 KHQVSLENENALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGIKTW 60
Score = 27.2 bits (59), Expect = 6.9
Identities = 37/258 (14%), Positives = 77/258 (29%), Gaps = 37/258 (14%)
Query: 142 SVPENIVSVLSEYTEQGYRVIALASRTLSIDDYKHLNYMKREDIEKDLEFLGLIILENRL 201
V + L + G V+ R + I + L +I N
Sbjct: 18 QVSLENENALRQAQRDGIEVVVSTGRA----------HFDVMSIFEPLGIKTWVISANGA 67
Query: 202 ----------------KPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGET 245
K + ++ L+ + TG I T + + +
Sbjct: 68 VIHDPEGRLYHHETIDKKRAYDILSWLESENYYYEVFTGSAIYTPQNGRELLDVELDRFR 127
Query: 246 VVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWE 305
+ A LK+ +V ++ SG + I + + + + + ++ W+
Sbjct: 128 SANPEADLSVLKQAAEVQYSQSGFAYINSFQELFEADEPIDFYNILGFSFFKEKLEAGWK 187
Query: 306 LIRDQMPELIPR-------IIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCG 358
+ + + A + +QL + L++ A GD ND
Sbjct: 188 RYEHAEDLTLVSSAEHNFELSSRKASKGQALKRLAKQLNIPLEE----TAAVGDSLNDKS 243
Query: 359 ALRAAHAGISLSEAESSV 376
L AA G+++ A +
Sbjct: 244 MLEAAGKGVAMGNAREDI 261
>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate
phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 243
Score = 27.7 bits (60), Expect = 4.0
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 196 ILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDP 242
++ + +I+ELKD +++ + KE + P
Sbjct: 13 LIPGYEPDPAKPIIEELKDMGFEIIFNSSKTRAEQEYYRKELEVETP 59
>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide
transhydrogenase dI component {Rhodospirillum rubrum
[TaxId: 1085]}
Length = 183
Score = 27.3 bits (60), Expect = 4.2
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 198 ENRLKPQTEGVIKELKDAR--VKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGG 255
E K Q E V+KEL + +I G I+ + + PG ++D++ GG
Sbjct: 98 EEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLIT-EEMVTKMKPGSVIIDLAVEAGG 156
Query: 256 LKECPKV--YFTVSGV 269
+ GV
Sbjct: 157 NCPLSEPGKIVVKHGV 172
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.410
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,500,440
Number of extensions: 119424
Number of successful extensions: 359
Number of sequences better than 10.0: 1
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 34
Length of query: 674
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 583
Effective length of database: 1,158,166
Effective search space: 675210778
Effective search space used: 675210778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.7 bits)