BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6091
(437 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 196 GCEDCEDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICR 246
G E E+ +CV+C + ++LPCRH CLC C + CP+CR
Sbjct: 7 GVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCR 53
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICR 246
EC ICM D R LILPC H C C D + NCPICR
Sbjct: 17 ECCICM-DGRADLILPCAH-SFCQKCIDKWSDRHRNCPICR 55
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 207 CVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251
C +CM + +PC HL +C CA SLR CPICR +
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICRGIIKG 338
>pdb|2VJE|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 63
Score = 37.4 bits (85), Expect = 0.015, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 198 EDCEDGGSECVICMCDIRDTLILPCR--HLCLCHSCADSLRYQANNCPICRAPFRALLQI 255
EDC++ C +C RD I+ R HL C CA L+ +CPIC+ + ++++
Sbjct: 1 EDCQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKV 60
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 36.6 bits (83), Expect = 0.030, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 207 CVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251
C +C+ + +PC HL +C CA L+ CPICRAP R+
Sbjct: 16 CKVCLDRAVSIVFVPCGHL-VCAECAPGLQL----CPICRAPVRS 55
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 207 CVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQ 254
C +CM + +PC HL +C CA SLR CPICR+ + ++
Sbjct: 27 CKVCMDKEVSIVFIPCGHLVVCKDCAPSLR----KCPICRSTIKGTVR 70
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 207 CVICMCDIRDTLILPCR--HLCLCHSCADSLRYQANNCPICRAPFRALL 253
CVIC ++ I+ + HL C +CA L+ + CP+CR P + ++
Sbjct: 10 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIV 58
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 207 CVICMCDIRDTLILPCR--HLCLCHSCADSLRYQANNCPICRAPFRALL 253
CVIC ++ I+ + HL C +CA L+ + CP+CR P + ++
Sbjct: 11 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIV 59
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 207 CVICMCDIRDTLILP-CRHLCLCHSCADS-LRYQANNCPICRAPFRALLQIRAL 258
C IC +RD + P C LC C SC L Q CP CRAP LQ+R L
Sbjct: 25 CFICXEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAP----LQLREL 73
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 207 CVICMCDI--RDTL-ILPCRHLCLCHSCADSLRYQANNCPICRA 247
CV+CMCD R L +LPC H C D CPICRA
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRA 68
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 191 NEQYKGCEDCEDGGS--ECVICMCDIRDTLILPCRHLCLCHSCADSLR-YQANNCPICRA 247
EQY+ CE G + C IC + +D I PC HL +C SC S + + CP CR
Sbjct: 321 QEQYE--LXCEMGSTFQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRC 377
Query: 248 PFRA 251
+
Sbjct: 378 EIKG 381
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 200 CEDGGS--ECVICMCDIRDTLILPCRHLCLCHSCADSLR-YQANNCPICRAPFRA 251
CE G + C IC + +D I PC HL +C SC S + + CP CR +
Sbjct: 326 CEMGSTFQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKG 379
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 200 CEDGGS--ECVICMCDIRDTLILPCRHLCLCHSCADSLR-YQANNCPICRAPFRA 251
CE G + C IC + +D I PC HL +C SC S + + CP CR +
Sbjct: 326 CEMGSTFQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKG 379
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 200 CEDGGS--ECVICMCDIRDTLILPCRHLCLCHSCADSLR-YQANNCPICRAPFRA 251
CE G + C IC + +D I PC HL +C SC S + + CP CR +
Sbjct: 328 CEMGSTFQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKG 381
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 200 CEDGGS--ECVICMCDIRDTLILPCRHLCLCHSCADSLR-YQANNCPICRAPFRA 251
CE G + C IC + +D I PC HL +C SC + + CP CR +
Sbjct: 332 CEMGSTFQLCKICAENDKDVKIEPCGHL-MCTSCLTAWQESDGQGCPFCRCEIKG 385
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 207 CVICMCDIRDTLILPCRHLCLCHSCADSLR-YQANNCPICRAPFRA 251
C IC + +D I PC HL +C SC S + + CP CR +
Sbjct: 30 CKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKG 74
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 207 CVICMCDIRDTLILPCRHLCLCHSCADSLR-YQANNCPICRAPFRA 251
C IC + +D I PC HL +C SC S + + CP CR +
Sbjct: 27 CKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKG 71
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICR 246
EC IC+ + LPC+H+ C+ C + C +CR
Sbjct: 17 ECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCR 56
>pdb|3K1Q|A Chain A, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3IYL|W Chain W, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1299
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 392 TSAGAEY---YGTKPS--SATAEYYGTKPTSATAEYYGTKPPKIR 431
TSAG +Y YG PS S A Y +PT AT YY T P + R
Sbjct: 171 TSAGCKYITLYGYDPSRPSTPATYGKHRPTYATVFYYSTLPARSR 215
>pdb|2K0A|A Chain A, 1h, 15n And 13c Chemical Shift Assignments For Rds3
Protein
Length = 109
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Query: 197 CEDCEDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPIC 245
CE C+ +C IC D+ + P R + +C +C S QA NC IC
Sbjct: 25 CEKCD---GKCPIC-----DSYVRPKRKVRVCENC--SFGKQAKNCIIC 63
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 206 ECVICMCDIR---DTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALL 253
+C IC+ + D LPC HL C D CPICR A L
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL 65
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSC-ADSLRYQANNCPI 244
EC IC+ +R+ + PC H C +C S+R + CP+
Sbjct: 20 ECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPV 58
>pdb|1BOR|A Chain A, Transcription Factor Pml, A Proto-Oncoprotein, Nmr, 1
Representative Structure At Ph 7.5, 30 C, In The
Presence Of Zinc
Length = 56
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 207 CVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPF 249
C C + + +LPC H LC C ++ Q CPIC+AP+
Sbjct: 9 CQQCQAEAKCPKLLPCLH-TLCSGCLEASGMQ---CPICQAPW 47
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251
+C+IC + + L C H C C + + CPICR ++
Sbjct: 55 QCIICSEYFIEAVTLNCAH-SFCSYCINEWMKRKIECPICRKDIKS 99
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 28.9 bits (63), Expect = 5.4, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251
+C+IC + + L C H C C + + CPICR ++
Sbjct: 55 QCIICSEYFIEAVTLNCAH-SFCSYCINEWMKRKIECPICRKDIKS 99
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 207 CVICMCDIRDTLILPCRHLCLCHSCADSLR-YQANNCPICRAPFRA 251
C IC + +D I PC HL +C SC + + CP CR +
Sbjct: 29 CKICAENDKDVKIEPCGHL-MCTSCLTAWQESDGQGCPFCRCEIKG 73
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSC-ADSLRYQANNCPI 244
EC IC+ +R+ + PC H C +C S+R + CP+
Sbjct: 27 ECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPV 65
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 28.1 bits (61), Expect = 9.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 202 DGGSECVICMCDIRD---TLILP-CRHLCLCHSCADSLRYQANNCPICR 246
D G EC +C+ ++ D LP C H C D + CP+CR
Sbjct: 3 DDGVECAVCLAELEDGEEARFLPRCGH-GFHAECVDMWLGSHSTCPLCR 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,456,043
Number of Sequences: 62578
Number of extensions: 555857
Number of successful extensions: 1304
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1274
Number of HSP's gapped (non-prelim): 58
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 53 (25.0 bits)