Query psy6091
Match_columns 437
No_of_seqs 246 out of 1345
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 17:24:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4265|consensus 100.0 2.9E-55 6.3E-60 438.5 18.3 254 2-261 65-347 (349)
2 PF13920 zf-C3HC4_3: Zinc fing 99.3 1.3E-12 2.8E-17 97.6 3.3 49 204-252 2-50 (50)
3 KOG4172|consensus 99.3 3E-13 6.4E-18 104.1 -1.9 51 204-254 7-58 (62)
4 PHA02929 N1R/p28-like protein; 98.7 1.3E-08 2.9E-13 99.5 4.8 55 203-258 173-235 (238)
5 KOG1571|consensus 98.7 5.5E-09 1.2E-13 106.4 1.9 51 200-254 301-351 (355)
6 PF13639 zf-RING_2: Ring finge 98.7 7.8E-09 1.7E-13 75.1 1.9 41 205-246 1-44 (44)
7 KOG0823|consensus 98.7 3.3E-08 7.1E-13 95.7 6.0 60 200-260 43-105 (230)
8 PLN03208 E3 ubiquitin-protein 98.7 3.1E-08 6.7E-13 94.1 5.6 55 203-258 17-87 (193)
9 KOG0317|consensus 98.6 2E-08 4.4E-13 99.8 3.1 53 200-253 235-287 (293)
10 PF13923 zf-C3HC4_2: Zinc fing 98.6 2.7E-08 5.8E-13 70.8 2.4 38 207-245 1-39 (39)
11 KOG4275|consensus 98.5 7.4E-09 1.6E-13 103.0 -1.9 48 204-255 300-347 (350)
12 COG5243 HRD1 HRD ubiquitin lig 98.4 8.4E-07 1.8E-11 91.1 7.9 47 203-250 286-345 (491)
13 cd00162 RING RING-finger (Real 98.4 2.8E-07 6E-12 64.5 3.1 43 206-249 1-45 (45)
14 KOG1100|consensus 98.3 1.5E-07 3.2E-12 90.4 1.6 47 205-255 159-205 (207)
15 KOG1785|consensus 98.3 3.6E-07 7.8E-12 94.4 4.1 59 203-262 368-428 (563)
16 PHA02926 zinc finger-like prot 98.3 2.9E-07 6.2E-12 89.1 2.4 51 203-254 169-234 (242)
17 PF15227 zf-C3HC4_4: zinc fing 98.3 5.9E-07 1.3E-11 65.6 3.3 38 207-245 1-42 (42)
18 COG5540 RING-finger-containing 98.2 6.7E-07 1.4E-11 89.8 3.2 48 202-250 321-372 (374)
19 smart00184 RING Ring finger. E 98.2 8.9E-07 1.9E-11 59.8 2.8 38 207-245 1-39 (39)
20 PF14634 zf-RING_5: zinc-RING 98.2 9.6E-07 2.1E-11 64.6 2.9 41 206-247 1-44 (44)
21 KOG0320|consensus 98.2 8.9E-07 1.9E-11 83.1 2.8 50 201-251 128-179 (187)
22 PF12678 zf-rbx1: RING-H2 zinc 98.2 1.6E-06 3.5E-11 70.2 3.8 40 206-246 21-73 (73)
23 KOG4628|consensus 98.2 3.2E-06 6.9E-11 86.7 6.8 48 205-253 230-281 (348)
24 smart00504 Ubox Modified RING 98.2 1.5E-06 3.2E-11 66.7 3.3 45 205-250 2-46 (63)
25 PF00097 zf-C3HC4: Zinc finger 98.1 1.2E-06 2.7E-11 62.3 2.3 38 207-245 1-41 (41)
26 TIGR00599 rad18 DNA repair pro 98.1 1.7E-06 3.6E-11 90.3 2.9 49 202-251 24-72 (397)
27 KOG2164|consensus 97.9 4.7E-06 1E-10 88.5 3.0 56 204-260 186-248 (513)
28 COG5574 PEX10 RING-finger-cont 97.9 5.1E-06 1.1E-10 82.1 2.0 48 202-250 213-262 (271)
29 PF13445 zf-RING_UBOX: RING-ty 97.9 6.9E-06 1.5E-10 60.6 1.9 31 207-239 1-35 (43)
30 KOG2177|consensus 97.8 7.3E-06 1.6E-10 76.0 1.3 45 202-247 11-55 (386)
31 KOG0802|consensus 97.8 8.2E-06 1.8E-10 88.1 1.4 45 203-248 290-339 (543)
32 KOG0824|consensus 97.7 1.5E-05 3.2E-10 80.2 1.4 52 203-255 6-58 (324)
33 KOG0287|consensus 97.6 2.2E-05 4.7E-10 80.2 1.3 50 202-252 21-70 (442)
34 COG5236 Uncharacterized conser 97.6 5.2E-05 1.1E-09 77.6 3.6 57 196-253 53-111 (493)
35 PF04564 U-box: U-box domain; 97.5 8.3E-05 1.8E-09 59.9 3.6 47 204-251 4-51 (73)
36 COG5432 RAD18 RING-finger-cont 97.4 6.7E-05 1.5E-09 75.4 1.8 49 202-251 23-71 (391)
37 KOG1039|consensus 97.3 8.3E-05 1.8E-09 76.6 1.8 52 202-254 159-225 (344)
38 TIGR00570 cdk7 CDK-activating 97.3 0.00015 3.2E-09 73.7 3.5 46 205-251 4-55 (309)
39 PF14447 Prok-RING_4: Prokaryo 97.3 0.0001 2.2E-09 57.3 1.0 45 204-251 7-51 (55)
40 KOG0978|consensus 97.0 0.00014 3.1E-09 80.4 -0.7 48 203-251 642-690 (698)
41 KOG4692|consensus 96.9 0.00037 8E-09 71.8 1.8 50 202-252 420-469 (489)
42 KOG4159|consensus 96.8 0.00062 1.3E-08 71.4 2.1 51 202-253 82-132 (398)
43 KOG0828|consensus 96.6 0.00071 1.5E-08 72.1 1.2 48 203-251 570-635 (636)
44 KOG0311|consensus 96.5 0.00028 6.1E-09 72.5 -2.4 54 204-258 43-98 (381)
45 PF12861 zf-Apc11: Anaphase-pr 96.3 0.0036 7.7E-08 52.8 3.1 32 218-250 48-82 (85)
46 smart00744 RINGv The RING-vari 95.9 0.0062 1.3E-07 46.0 2.4 40 206-246 1-49 (49)
47 KOG0804|consensus 95.8 0.0096 2.1E-07 63.1 4.5 45 203-250 174-222 (493)
48 KOG0825|consensus 95.7 0.0026 5.7E-08 70.9 -0.4 51 204-255 123-176 (1134)
49 PF14835 zf-RING_6: zf-RING of 95.6 0.0042 9.1E-08 49.9 0.7 43 204-249 7-50 (65)
50 PF14570 zf-RING_4: RING/Ubox 95.0 0.012 2.7E-07 44.6 1.4 42 207-249 1-47 (48)
51 COG5152 Uncharacterized conser 94.8 0.013 2.8E-07 56.6 1.5 55 200-255 192-246 (259)
52 KOG0297|consensus 94.7 0.013 2.9E-07 61.3 1.4 89 202-291 19-110 (391)
53 PF04641 Rtf2: Rtf2 RING-finge 94.7 0.04 8.6E-07 54.5 4.7 54 201-256 110-167 (260)
54 KOG1813|consensus 94.5 0.016 3.5E-07 58.6 1.5 54 200-254 237-290 (313)
55 KOG4367|consensus 93.7 0.035 7.5E-07 59.0 1.9 36 203-239 3-38 (699)
56 KOG3039|consensus 93.7 0.074 1.6E-06 53.0 4.1 58 203-262 220-281 (303)
57 KOG1814|consensus 93.4 0.036 7.7E-07 58.4 1.5 33 203-236 183-218 (445)
58 COG5219 Uncharacterized conser 93.4 0.033 7.1E-07 63.7 1.3 49 201-250 1466-1523(1525)
59 KOG2879|consensus 93.4 0.078 1.7E-06 53.4 3.8 51 202-253 237-290 (298)
60 KOG1001|consensus 93.3 0.036 7.8E-07 62.0 1.4 47 205-253 455-503 (674)
61 PF07800 DUF1644: Protein of u 93.2 0.1 2.2E-06 48.7 4.0 56 204-259 2-100 (162)
62 KOG2660|consensus 92.7 0.028 6E-07 57.7 -0.5 49 204-253 15-64 (331)
63 COG5175 MOT2 Transcriptional r 92.7 0.049 1.1E-06 56.3 1.2 47 204-251 14-65 (480)
64 KOG3002|consensus 92.4 0.079 1.7E-06 54.0 2.2 46 202-252 46-93 (299)
65 KOG4739|consensus 92.0 0.067 1.4E-06 52.8 1.2 41 207-250 6-48 (233)
66 KOG1002|consensus 91.2 0.067 1.5E-06 58.0 0.3 49 201-250 533-586 (791)
67 KOG4185|consensus 90.5 0.16 3.5E-06 50.5 2.2 44 205-249 4-54 (296)
68 KOG4445|consensus 90.3 0.1 2.2E-06 53.3 0.7 48 203-251 114-187 (368)
69 KOG3800|consensus 90.1 0.2 4.4E-06 50.8 2.5 44 206-250 2-51 (300)
70 KOG2932|consensus 89.2 0.095 2.1E-06 53.7 -0.5 49 204-255 90-139 (389)
71 KOG0827|consensus 89.1 0.25 5.5E-06 52.0 2.4 51 204-255 4-61 (465)
72 KOG1428|consensus 89.0 0.22 4.8E-06 59.4 2.1 53 200-253 3482-3547(3738)
73 KOG2113|consensus 88.8 0.34 7.3E-06 49.9 3.0 53 202-256 341-393 (394)
74 KOG1645|consensus 88.5 0.31 6.8E-06 51.6 2.6 46 203-249 3-55 (463)
75 COG5220 TFB3 Cdk activating ki 88.5 0.15 3.2E-06 50.8 0.2 46 204-250 10-64 (314)
76 KOG1734|consensus 87.7 0.22 4.7E-06 50.3 0.9 48 202-250 222-281 (328)
77 PHA02825 LAP/PHD finger-like p 87.0 0.54 1.2E-05 44.1 2.9 49 201-250 5-59 (162)
78 PF05290 Baculo_IE-1: Baculovi 86.8 0.32 6.9E-06 44.5 1.3 49 203-252 79-134 (140)
79 PF10272 Tmpp129: Putative tra 86.6 0.7 1.5E-05 48.4 3.9 47 203-250 270-351 (358)
80 PF03854 zf-P11: P-11 zinc fin 86.5 0.25 5.5E-06 37.7 0.4 44 206-252 4-48 (50)
81 PF11793 FANCL_C: FANCL C-term 86.2 0.18 3.8E-06 40.7 -0.6 46 204-250 2-66 (70)
82 COG5222 Uncharacterized conser 86.0 0.33 7.1E-06 49.7 1.1 42 205-247 275-318 (427)
83 COG5194 APC11 Component of SCF 85.6 0.75 1.6E-05 38.8 2.8 32 218-250 50-81 (88)
84 PHA03096 p28-like protein; Pro 85.5 0.4 8.7E-06 48.6 1.4 42 205-247 179-231 (284)
85 PF05883 Baculo_RING: Baculovi 84.9 0.48 1E-05 43.3 1.5 33 204-237 26-67 (134)
86 PF11789 zf-Nse: Zinc-finger o 82.6 1.2 2.6E-05 34.8 2.7 41 203-244 10-53 (57)
87 PHA02862 5L protein; Provision 82.5 1.1 2.4E-05 41.5 2.9 46 204-250 2-53 (156)
88 KOG3842|consensus 81.7 1 2.2E-05 46.6 2.5 36 27-64 63-102 (429)
89 KOG0826|consensus 80.5 1.2 2.6E-05 46.2 2.5 48 200-248 296-344 (357)
90 PF04710 Pellino: Pellino; In 77.0 0.77 1.7E-05 48.5 0.0 48 203-251 327-402 (416)
91 KOG4265|consensus 76.9 2.1 4.6E-05 44.6 3.1 21 14-34 107-127 (349)
92 KOG4362|consensus 76.6 0.66 1.4E-05 52.0 -0.7 46 204-250 21-69 (684)
93 KOG1493|consensus 75.5 0.87 1.9E-05 38.1 -0.1 29 221-250 50-81 (84)
94 KOG2930|consensus 74.4 1.9 4E-05 38.1 1.7 28 220-248 79-106 (114)
95 KOG2113|consensus 72.8 0.95 2E-05 46.7 -0.6 56 203-258 135-191 (394)
96 PF10367 Vps39_2: Vacuolar sor 70.3 2.6 5.6E-05 35.1 1.6 30 203-233 77-108 (109)
97 KOG1940|consensus 69.1 2.6 5.5E-05 42.8 1.5 45 205-251 159-207 (276)
98 PF12906 RINGv: RING-variant d 68.6 3.4 7.4E-05 30.8 1.7 39 207-245 1-47 (47)
99 KOG3899|consensus 67.3 3.2 7E-05 42.6 1.8 28 222-250 325-365 (381)
100 PLN02189 cellulose synthase 67.2 3.9 8.4E-05 48.1 2.6 51 202-253 32-90 (1040)
101 PF04216 FdhE: Protein involve 67.1 1.7 3.8E-05 43.5 -0.1 53 203-256 171-228 (290)
102 KOG0298|consensus 64.1 1.8 4E-05 51.5 -0.7 49 204-253 1153-1202(1394)
103 PF02891 zf-MIZ: MIZ/SP-RING z 62.6 6 0.00013 29.9 2.1 43 205-248 3-50 (50)
104 KOG1941|consensus 62.5 1.8 3.9E-05 45.9 -1.0 49 201-250 362-416 (518)
105 KOG3161|consensus 59.0 3.1 6.8E-05 46.6 0.0 37 204-243 11-51 (861)
106 KOG3799|consensus 58.6 2.1 4.6E-05 39.4 -1.2 46 203-252 64-120 (169)
107 COG5183 SSM4 Protein involved 56.5 7.9 0.00017 44.6 2.6 52 203-255 11-70 (1175)
108 KOG2068|consensus 56.1 7.6 0.00016 40.3 2.2 46 204-250 249-298 (327)
109 KOG2817|consensus 52.9 9.7 0.00021 40.4 2.4 44 205-249 335-384 (394)
110 KOG0801|consensus 52.0 6.6 0.00014 37.3 0.9 23 200-222 173-198 (205)
111 TIGR01562 FdhE formate dehydro 49.9 5 0.00011 41.2 -0.2 45 203-248 183-233 (305)
112 KOG2231|consensus 48.6 11 0.00023 42.8 2.0 48 206-253 2-55 (669)
113 KOG3579|consensus 48.3 14 0.0003 38.0 2.6 33 204-237 268-304 (352)
114 PLN02436 cellulose synthase A 46.8 14 0.0003 43.9 2.6 51 202-253 34-92 (1094)
115 KOG3053|consensus 46.4 10 0.00022 38.4 1.3 53 201-253 17-85 (293)
116 cd00240 TFIIFa Transcription i 45.2 14 0.0003 35.0 1.9 35 221-255 4-39 (162)
117 KOG0825|consensus 44.8 10 0.00022 43.6 1.2 54 202-256 97-160 (1134)
118 KOG3970|consensus 41.2 20 0.00044 35.8 2.5 49 203-252 49-107 (299)
119 KOG3113|consensus 41.0 32 0.00068 35.0 3.8 55 202-259 109-167 (293)
120 PLN02638 cellulose synthase A 40.9 20 0.00043 42.7 2.7 51 202-253 15-73 (1079)
121 KOG4185|consensus 40.8 4 8.6E-05 40.6 -2.5 45 203-248 206-265 (296)
122 PRK03564 formate dehydrogenase 40.3 9.9 0.00021 39.2 0.2 45 203-248 186-235 (309)
123 PF07191 zinc-ribbons_6: zinc- 38.3 4.1 8.9E-05 33.4 -2.3 43 205-253 2-44 (70)
124 KOG1815|consensus 38.0 16 0.00036 38.9 1.4 50 203-253 69-129 (444)
125 PF07975 C1_4: TFIIH C1-like d 37.4 19 0.00042 27.8 1.3 25 221-246 26-50 (51)
126 PF13240 zinc_ribbon_2: zinc-r 33.9 9.9 0.00021 24.5 -0.6 23 227-249 1-23 (23)
127 PF04423 Rad50_zn_hook: Rad50 33.7 16 0.00035 27.7 0.4 13 239-251 20-32 (54)
128 PF14569 zf-UDP: Zinc-binding 32.1 29 0.00062 29.3 1.6 50 202-252 7-64 (80)
129 PF10571 UPF0547: Uncharacteri 30.3 16 0.00034 24.4 -0.2 22 228-249 3-24 (26)
130 KOG2114|consensus 30.2 24 0.00052 41.0 1.1 47 205-255 841-888 (933)
131 KOG1812|consensus 30.2 16 0.00034 38.6 -0.2 33 203-236 145-181 (384)
132 COG4306 Uncharacterized protei 29.6 48 0.001 30.5 2.7 33 226-261 29-61 (160)
133 PF10235 Cript: Microtubule-as 25.9 31 0.00068 29.6 0.9 38 204-251 44-81 (90)
134 PF10146 zf-C4H2: Zinc finger- 25.3 40 0.00088 33.4 1.6 25 226-250 195-219 (230)
135 PF08746 zf-RING-like: RING-li 25.0 72 0.0016 23.4 2.5 23 222-245 19-43 (43)
136 KOG2807|consensus 24.8 44 0.00095 35.1 1.8 43 204-247 330-375 (378)
137 KOG0269|consensus 24.2 62 0.0014 37.3 3.0 43 204-247 779-825 (839)
138 KOG4218|consensus 23.4 53 0.0011 34.8 2.1 16 201-216 12-27 (475)
139 PRK11595 DNA utilization prote 20.5 72 0.0016 30.8 2.3 39 206-250 7-45 (227)
140 KOG2034|consensus 20.1 51 0.0011 38.5 1.3 32 203-235 816-849 (911)
No 1
>KOG4265|consensus
Probab=100.00 E-value=2.9e-55 Score=438.48 Aligned_cols=254 Identities=41% Similarity=0.670 Sum_probs=214.2
Q ss_pred CCCccCCCCC-CCCCCCcceeeeeeeeccCeeeeEecc---------------------------CcCCCceeEEEEEEe
Q psy6091 2 QPMALFPYPP-PQSNEPYKTLKALINIRKESLRFVKVN---------------------------DESQRQVYNIEFIFD 53 (437)
Q Consensus 2 ~~p~~fpy~~-p~~~e~~~tlrn~VNIrKdSlRlv~~~---------------------------~~~~~~~y~v~FtFD 53 (437)
+||+.|||.. |+.|.+.+++..+||+||+|++++..+ |..+++.|+++|+||
T Consensus 65 ~rp~~~Py~~~~~~h~~~~~~~~l~~~r~~s~~~~~~~~~~~~~~~av~i~~d~~l~k~~~~l~~d~~~P~~~~~sf~fd 144 (349)
T KOG4265|consen 65 SRPVLFPYYFTPLSHAPIRPLIDLVNYRKPSLLLVCAPPDQYLHQKAVTIRNDVNLDKETLRLDPDPLTPGLLLLSFTFD 144 (349)
T ss_pred cccccCCCCCCCcccccccchhhcccccccccceEecCCCccccccceeccchhhcccceEEeccCCCCcceeEEEEEec
Confidence 4788888887 666666666655555555555444332 123788999999999
Q ss_pred ccCCeEEEEEEeEEEcccCCceeeecCCCCCCCceeEEEecCCCCceecCCceeecCCCCCcchhcccCCCceeeEEEEE
Q psy6091 54 CDVPCSITVHFFVTEDIMGNTISYIPKKSNPCPVVKTFHYKKGASQLFCQPGVTFIPSQYEDDELMYNIDKEIIPIAIQC 133 (437)
Q Consensus 54 A~~~csItIyf~a~E~~~~~~~~~~p~~~~~~l~s~t~~f~kGl~Q~F~qps~~iD~s~~~e~eL~~~~~~~~~PlvI~~ 133 (437)
|+.+|+|+|+|||+|+..++.+.+.+.. +.+.||+|++|++|+|.|+++.||++.|++++|.+..++.+||++|++
T Consensus 145 a~~~g~itV~~fakE~~~c~~~~~~~~~----~~~~t~~f~~gl~Q~F~q~s~~~D~~~~~~~~L~~~~~~~vyplsi~~ 220 (349)
T KOG4265|consen 145 ALAQGAITVLFFAKEEVLCGLVLLVPDE----LPSITVHFEKGLGQLFLQPSTGIDFSVMSIDDLSLSLDRRVYPLSISA 220 (349)
T ss_pred cccCccEEEEEecccccccccccccccc----CCCeeEEcccchhhhhcCCccccchhhcchhhhcccccCCeeeEEEEE
Confidence 9999999999999999999988777653 568999999999999999998899999999999999999999999999
Q ss_pred EeecCC-CCcccccceEEEEEEEecCCCceeeeeeeeEEeeCCeEEEeeeeeccccCCCCcCCCCCCCCCCccccccccc
Q psy6091 134 VTTSDD-GQEDQKQCHTTIAVVDHHADDSYTLKGLKQKLYVDGLCYLLQEIYGIENKNNEQYKGCEDCEDGGSECVICMC 212 (437)
Q Consensus 134 ~~~s~e-g~~~~~qsq~t~av~ek~~dg~~~vkvlKQkl~v~g~~Y~lQEIYGien~~~~~~~~d~d~ed~~~eC~ICl~ 212 (437)
++...+ +..-..+.+++.++.++.++|.++++++||++|++|+.|++||||||+++..+.... ++.+++++|+|||+
T Consensus 221 ~~~~~~~~~~~~~~~~~tq~v~~~~~~G~~~~~~~kQ~~~v~g~~y~LqEiyGien~~v~~~~~--~~~~~gkeCVICls 298 (349)
T KOG4265|consen 221 EVQPSDVVESMGVFHVITQAVYEKDEKGSIKIKVLKQILWVDGTRYLLQEIYGIENSTVEGTDA--DESESGKECVICLS 298 (349)
T ss_pred EEeccccccccceeeEEEeeeeccCcCCceeeeeeeeEEEEeCceeeeehhhccccCCCCCCcc--ccccCCCeeEEEec
Confidence 984211 222334566788888888799999999999999999999999999999887654322 25578999999999
Q ss_pred cccCeEEECcCCccccHhhHHHHhccCCCCccccccccceEEEEecccC
Q psy6091 213 DIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQIRALQKN 261 (437)
Q Consensus 213 ~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I~~~~~~ 261 (437)
+.+|+++|||||+|+|.+|++.|+.|.++|||||++|..+++|.+.++.
T Consensus 299 e~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~~~~~ 347 (349)
T KOG4265|consen 299 ESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYVNKED 347 (349)
T ss_pred CCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecccccc
Confidence 9999999999999999999999999999999999999999999988764
No 2
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.30 E-value=1.3e-12 Score=97.63 Aligned_cols=49 Identities=45% Similarity=1.147 Sum_probs=44.0
Q ss_pred ccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccce
Q psy6091 204 GSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRAL 252 (437)
Q Consensus 204 ~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~l 252 (437)
+.+|.||++..++++++||||+++|..|+..|......||+||++|..+
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 4689999999999999999999999999999999899999999999753
No 3
>KOG4172|consensus
Probab=99.27 E-value=3e-13 Score=104.09 Aligned_cols=51 Identities=35% Similarity=0.956 Sum_probs=46.1
Q ss_pred ccccccccccccCeEEECcCCccccHhhHHHHhc-cCCCCccccccccceEE
Q psy6091 204 GSECVICMCDIRDTLILPCRHLCLCHSCADSLRY-QANNCPICRAPFRALLQ 254 (437)
Q Consensus 204 ~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~-qs~~CPiCR~~I~~ll~ 254 (437)
++||.|||+.+.|.++.-|||||+|..|...++. ....||+||++|..+++
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIk 58 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIK 58 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHH
Confidence 3799999999999999999999999999988765 56799999999998763
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.70 E-value=1.3e-08 Score=99.46 Aligned_cols=55 Identities=35% Similarity=0.910 Sum_probs=46.3
Q ss_pred CccccccccccccC--------eEEECcCCccccHhhHHHHhccCCCCccccccccceEEEEec
Q psy6091 203 GGSECVICMCDIRD--------TLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQIRAL 258 (437)
Q Consensus 203 ~~~eC~ICl~~~~d--------~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I~~~ 258 (437)
.+.+|.||++...+ .++.+|+|. ||..|...|+.....||+||..+..++..+.-
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~~ 235 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKSRFF 235 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeeeeee
Confidence 46799999987543 366789998 99999999999999999999999988866543
No 5
>KOG1571|consensus
Probab=98.69 E-value=5.5e-09 Score=106.37 Aligned_cols=51 Identities=29% Similarity=0.854 Sum_probs=45.6
Q ss_pred CCCCccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceEE
Q psy6091 200 CEDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQ 254 (437)
Q Consensus 200 ~ed~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~ 254 (437)
+......|+||++++.+++++||||+|.|..|.+.+ ..||+||+.|...++
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l----~~CPvCR~rI~~~~k 351 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHL----PQCPVCRQRIRLVRK 351 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEEchHHHhhC----CCCchhHHHHHHHHH
Confidence 345678999999999999999999999999999999 669999999987654
No 6
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.68 E-value=7.8e-09 Score=75.14 Aligned_cols=41 Identities=37% Similarity=0.955 Sum_probs=35.5
Q ss_pred cccccccccc---cCeEEECcCCccccHhhHHHHhccCCCCcccc
Q psy6091 205 SECVICMCDI---RDTLILPCRHLCLCHSCADSLRYQANNCPICR 246 (437)
Q Consensus 205 ~eC~ICl~~~---~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR 246 (437)
++|.||++.. ..++.++|+|. ||..|...|......||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 4799999866 45889999999 99999999999999999998
No 7
>KOG0823|consensus
Probab=98.66 E-value=3.3e-08 Score=95.72 Aligned_cols=60 Identities=23% Similarity=0.573 Sum_probs=49.9
Q ss_pred CCCCccccccccccccCeEEECcCCccccHhhHHHHhcc---CCCCccccccccceEEEEeccc
Q psy6091 200 CEDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQ---ANNCPICRAPFRALLQIRALQK 260 (437)
Q Consensus 200 ~ed~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~q---s~~CPiCR~~I~~ll~I~~~~~ 260 (437)
.++..-+|-|||+..+|+||-+|||+ ||+.|.-+|... ++.||+|+..|..--.|.+..+
T Consensus 43 ~~~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGr 105 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGR 105 (230)
T ss_pred CCCCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeeecc
Confidence 45678999999999999999999999 999999999764 3588999999887554444433
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.65 E-value=3.1e-08 Score=94.06 Aligned_cols=55 Identities=27% Similarity=0.797 Sum_probs=45.2
Q ss_pred CccccccccccccCeEEECcCCccccHhhHHHHhcc----------------CCCCccccccccceEEEEec
Q psy6091 203 GGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQ----------------ANNCPICRAPFRALLQIRAL 258 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~q----------------s~~CPiCR~~I~~ll~I~~~ 258 (437)
...+|.||++...+.++.+|+|. ||..|...|... ...||+||..|...--+.+.
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 45789999999999999999999 999999998642 24899999999874433333
No 9
>KOG0317|consensus
Probab=98.61 E-value=2e-08 Score=99.77 Aligned_cols=53 Identities=25% Similarity=0.703 Sum_probs=47.4
Q ss_pred CCCCccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceE
Q psy6091 200 CEDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALL 253 (437)
Q Consensus 200 ~ed~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll 253 (437)
.......|.+||++..+....||||. ||+.|...|.....-||+||..+.---
T Consensus 235 i~~a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcc
Confidence 34466899999999999999999999 999999999999999999999887543
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.59 E-value=2.7e-08 Score=70.85 Aligned_cols=38 Identities=34% Similarity=1.079 Sum_probs=33.9
Q ss_pred cccccccccCe-EEECcCCccccHhhHHHHhccCCCCccc
Q psy6091 207 CVICMCDIRDT-LILPCRHLCLCHSCADSLRYQANNCPIC 245 (437)
Q Consensus 207 C~ICl~~~~d~-vlLPC~H~C~C~~Ca~~l~~qs~~CPiC 245 (437)
|+||++..+++ ++++|||+ ||..|+..+.....+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 89999999998 78999999 9999999999888899998
No 11
>KOG4275|consensus
Probab=98.54 E-value=7.4e-09 Score=103.04 Aligned_cols=48 Identities=38% Similarity=0.896 Sum_probs=45.3
Q ss_pred ccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceEEE
Q psy6091 204 GSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQI 255 (437)
Q Consensus 204 ~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I 255 (437)
..+|.|||+.++|.++|+||||..|..|-..| +.|||||+.|..+.+|
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~rvvri 347 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYIVRVVRI 347 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHHHHHHhh
Confidence 68999999999999999999999999999999 7999999999887766
No 12
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=8.4e-07 Score=91.11 Aligned_cols=47 Identities=34% Similarity=0.780 Sum_probs=40.2
Q ss_pred Ccccccccccccc-------------CeEEECcCCccccHhhHHHHhccCCCCcccccccc
Q psy6091 203 GGSECVICMCDIR-------------DTLILPCRHLCLCHSCADSLRYQANNCPICRAPFR 250 (437)
Q Consensus 203 ~~~eC~ICl~~~~-------------d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~ 250 (437)
.+..|.|||++.. .+.=|||||. +.-.|.+.|....+.|||||.++.
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCccc
Confidence 4679999998722 2467999997 999999999999999999999964
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.37 E-value=2.8e-07 Score=64.54 Aligned_cols=43 Identities=44% Similarity=1.183 Sum_probs=35.8
Q ss_pred ccccccccccCeEE-ECcCCccccHhhHHHHhcc-CCCCccccccc
Q psy6091 206 ECVICMCDIRDTLI-LPCRHLCLCHSCADSLRYQ-ANNCPICRAPF 249 (437)
Q Consensus 206 eC~ICl~~~~d~vl-LPC~H~C~C~~Ca~~l~~q-s~~CPiCR~~I 249 (437)
.|.||++...+.+. .+|+|. ||..|...|..+ ...||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 59999998855544 459999 999999999877 67899999864
No 14
>KOG1100|consensus
Probab=98.35 E-value=1.5e-07 Score=90.37 Aligned_cols=47 Identities=45% Similarity=1.027 Sum_probs=42.2
Q ss_pred cccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceEEE
Q psy6091 205 SECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQI 255 (437)
Q Consensus 205 ~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I 255 (437)
..|.+|-.+...++++||+|+|+|..|...+ ..||+|+.+..+.+++
T Consensus 159 ~~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~----~~CPiC~~~~~s~~~v 205 (207)
T KOG1100|consen 159 RSCRKCGEREATVLLLPCRHLCLCGICDESL----RICPICRSPKTSSVEV 205 (207)
T ss_pred ccceecCcCCceEEeecccceEecccccccC----ccCCCCcChhhceeec
Confidence 3499999999999999999999999999885 6799999999887754
No 15
>KOG1785|consensus
Probab=98.33 E-value=3.6e-07 Score=94.41 Aligned_cols=59 Identities=29% Similarity=0.595 Sum_probs=53.3
Q ss_pred CccccccccccccCeEEECcCCccccHhhHHHHhcc--CCCCccccccccceEEEEecccCC
Q psy6091 203 GGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQ--ANNCPICRAPFRALLQIRALQKNS 262 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~q--s~~CPiCR~~I~~ll~I~~~~~~~ 262 (437)
.-.+|.||-++.+|+.|-||||+ +|..|...|... .+.||+||..|.+.-.|.+.+..+
T Consensus 368 TFeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~viid~F~p 428 (563)
T KOG1785|consen 368 TFELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVIIDPFDP 428 (563)
T ss_pred hHHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccceeeeccCC
Confidence 45789999999999999999999 999999999744 579999999999999999887765
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.30 E-value=2.9e-07 Score=89.14 Aligned_cols=51 Identities=33% Similarity=0.766 Sum_probs=40.6
Q ss_pred Cccccccccccc---------cCeEEECcCCccccHhhHHHHhccC------CCCccccccccceEE
Q psy6091 203 GGSECVICMCDI---------RDTLILPCRHLCLCHSCADSLRYQA------NNCPICRAPFRALLQ 254 (437)
Q Consensus 203 ~~~eC~ICl~~~---------~d~vlLPC~H~C~C~~Ca~~l~~qs------~~CPiCR~~I~~ll~ 254 (437)
.+.+|.|||+.. +-.++.+|+|. ||..|...|+... ..||+||..+..+..
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 457999999863 12577899999 9999999998742 359999999885553
No 17
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.29 E-value=5.9e-07 Score=65.60 Aligned_cols=38 Identities=39% Similarity=0.985 Sum_probs=30.6
Q ss_pred cccccccccCeEEECcCCccccHhhHHHHhccC----CCCccc
Q psy6091 207 CVICMCDIRDTLILPCRHLCLCHSCADSLRYQA----NNCPIC 245 (437)
Q Consensus 207 C~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs----~~CPiC 245 (437)
|+||++-..+++.|+|||. ||..|...++... -.||+|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999 9999999998654 269988
No 18
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=6.7e-07 Score=89.82 Aligned_cols=48 Identities=38% Similarity=0.887 Sum_probs=41.7
Q ss_pred CCccccccccccccC---eEEECcCCccccHhhHHHHhc-cCCCCcccccccc
Q psy6091 202 DGGSECVICMCDIRD---TLILPCRHLCLCHSCADSLRY-QANNCPICRAPFR 250 (437)
Q Consensus 202 d~~~eC~ICl~~~~d---~vlLPC~H~C~C~~Ca~~l~~-qs~~CPiCR~~I~ 250 (437)
+.+-+|.|||++... .+++||.|. |...|.++|.. .++.||+||.+|.
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 456899999986543 789999999 99999999998 6789999999875
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.22 E-value=8.9e-07 Score=59.81 Aligned_cols=38 Identities=42% Similarity=1.131 Sum_probs=34.4
Q ss_pred cccccccccCeEEECcCCccccHhhHHHHhc-cCCCCccc
Q psy6091 207 CVICMCDIRDTLILPCRHLCLCHSCADSLRY-QANNCPIC 245 (437)
Q Consensus 207 C~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~-qs~~CPiC 245 (437)
|.||++...+++++||+|. ||..|...|.. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 8899999999999999999 99999999977 45679988
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.21 E-value=9.6e-07 Score=64.56 Aligned_cols=41 Identities=34% Similarity=0.933 Sum_probs=35.4
Q ss_pred ccccccccc---cCeEEECcCCccccHhhHHHHhccCCCCccccc
Q psy6091 206 ECVICMCDI---RDTLILPCRHLCLCHSCADSLRYQANNCPICRA 247 (437)
Q Consensus 206 eC~ICl~~~---~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~ 247 (437)
.|.||+... ....+++|||. ||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 489998776 45899999999 999999999855679999985
No 21
>KOG0320|consensus
Probab=98.18 E-value=8.9e-07 Score=83.10 Aligned_cols=50 Identities=26% Similarity=0.769 Sum_probs=41.9
Q ss_pred CCCccccccccccccCeE--EECcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 201 EDGGSECVICMCDIRDTL--ILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 201 ed~~~eC~ICl~~~~d~v--lLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
......|+|||+....-+ ---|||+ ||..|++.++....+||+||+.|..
T Consensus 128 ~~~~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred cccccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccch
Confidence 334578999998777654 3689999 9999999999999999999987764
No 22
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.17 E-value=1.6e-06 Score=70.19 Aligned_cols=40 Identities=33% Similarity=0.800 Sum_probs=33.4
Q ss_pred ccccccccc-------------cCeEEECcCCccccHhhHHHHhccCCCCcccc
Q psy6091 206 ECVICMCDI-------------RDTLILPCRHLCLCHSCADSLRYQANNCPICR 246 (437)
Q Consensus 206 eC~ICl~~~-------------~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR 246 (437)
.|.||++.. ..+++.+|+|. |...|...|....+.||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 499998765 22466799999 99999999999999999998
No 23
>KOG4628|consensus
Probab=98.17 E-value=3.2e-06 Score=86.74 Aligned_cols=48 Identities=33% Similarity=0.735 Sum_probs=40.9
Q ss_pred cccccccccccC---eEEECcCCccccHhhHHHHhccCC-CCccccccccceE
Q psy6091 205 SECVICMCDIRD---TLILPCRHLCLCHSCADSLRYQAN-NCPICRAPFRALL 253 (437)
Q Consensus 205 ~eC~ICl~~~~d---~vlLPC~H~C~C~~Ca~~l~~qs~-~CPiCR~~I~~ll 253 (437)
..|+|||+.... ..+|||+|. |...|.+.|..+.. .||+|++.+..-.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 799999987776 788999999 99999999998875 5999999665433
No 24
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.16 E-value=1.5e-06 Score=66.73 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=41.7
Q ss_pred cccccccccccCeEEECcCCccccHhhHHHHhccCCCCcccccccc
Q psy6091 205 SECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFR 250 (437)
Q Consensus 205 ~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~ 250 (437)
..|.||++...+.+++||||. +|..|...|......||+|+.++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCC
Confidence 469999999999999999999 999999999888889999999884
No 25
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.15 E-value=1.2e-06 Score=62.28 Aligned_cols=38 Identities=34% Similarity=0.984 Sum_probs=34.7
Q ss_pred cccccccccCeE-EECcCCccccHhhHHHHhc--cCCCCccc
Q psy6091 207 CVICMCDIRDTL-ILPCRHLCLCHSCADSLRY--QANNCPIC 245 (437)
Q Consensus 207 C~ICl~~~~d~v-lLPC~H~C~C~~Ca~~l~~--qs~~CPiC 245 (437)
|.||++...+.+ +++|+|. ||..|...|.. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 899999999988 9999999 99999999987 45689998
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.09 E-value=1.7e-06 Score=90.33 Aligned_cols=49 Identities=27% Similarity=0.606 Sum_probs=44.3
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
+....|.||++...+++++||+|. ||..|...+......||+||..+..
T Consensus 24 e~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 456799999999999999999999 9999999998877789999999864
No 27
>KOG2164|consensus
Probab=97.94 E-value=4.7e-06 Score=88.50 Aligned_cols=56 Identities=25% Similarity=0.573 Sum_probs=48.2
Q ss_pred ccccccccccccCeEEECcCCccccHhhHHHHhccC-----CCCccccccccc--eEEEEeccc
Q psy6091 204 GSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQA-----NNCPICRAPFRA--LLQIRALQK 260 (437)
Q Consensus 204 ~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs-----~~CPiCR~~I~~--ll~I~~~~~ 260 (437)
+..|+|||+.+..++..-|||. ||..|.-.++..+ ..|||||..|.. +..|...+.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~ 248 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDD 248 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccc
Confidence 6799999999999999999999 9999998877654 589999999988 776666554
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=5.1e-06 Score=82.12 Aligned_cols=48 Identities=29% Similarity=0.646 Sum_probs=41.9
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHH-HhccCC-CCcccccccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADS-LRYQAN-NCPICRAPFR 250 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~-l~~qs~-~CPiCR~~I~ 250 (437)
..+..|.||++...+..-.||||+ ||..|.-. |..+.. .||+||+.+.
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence 356899999999999999999999 99999999 766554 6999999765
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.86 E-value=6.9e-06 Score=60.59 Aligned_cols=31 Identities=32% Similarity=0.942 Sum_probs=21.1
Q ss_pred cccccccccC----eEEECcCCccccHhhHHHHhccC
Q psy6091 207 CVICMCDIRD----TLILPCRHLCLCHSCADSLRYQA 239 (437)
Q Consensus 207 C~ICl~~~~d----~vlLPC~H~C~C~~Ca~~l~~qs 239 (437)
|+||.+ ..+ +++|||||. ||..|.+.|...+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHHHhcC
Confidence 899998 666 899999999 9999999998754
No 30
>KOG2177|consensus
Probab=97.79 E-value=7.3e-06 Score=76.05 Aligned_cols=45 Identities=31% Similarity=0.832 Sum_probs=40.2
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRA 247 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~ 247 (437)
.....|.||++...+++++||+|. ||..|...++...-.||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 356799999999999999999999 999999999875569999994
No 31
>KOG0802|consensus
Probab=97.77 E-value=8.2e-06 Score=88.07 Aligned_cols=45 Identities=31% Similarity=0.784 Sum_probs=41.7
Q ss_pred CccccccccccccC-----eEEECcCCccccHhhHHHHhccCCCCcccccc
Q psy6091 203 GGSECVICMCDIRD-----TLILPCRHLCLCHSCADSLRYQANNCPICRAP 248 (437)
Q Consensus 203 ~~~eC~ICl~~~~d-----~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~ 248 (437)
....|.||++.... +..|||+|. ||..|.+.|..+.+.||+||..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~ 339 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTV 339 (543)
T ss_pred cCCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhh
Confidence 46799999998888 899999999 9999999999999999999993
No 32
>KOG0824|consensus
Probab=97.67 E-value=1.5e-05 Score=80.22 Aligned_cols=52 Identities=25% Similarity=0.587 Sum_probs=44.7
Q ss_pred CccccccccccccCeEEECcCCccccHhhHHHHhccC-CCCccccccccceEEE
Q psy6091 203 GGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQA-NNCPICRAPFRALLQI 255 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs-~~CPiCR~~I~~ll~I 255 (437)
..++|.||+....-.+.|+|+|. ||..|.+..-... ..|++||.+|.+-+-.
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~Hk-FCyiCiKGsy~ndk~~CavCR~pids~i~~ 58 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHK-FCYICIKGSYKNDKKTCAVCRFPIDSTIDF 58 (324)
T ss_pred cCCcceeeeccCCcCccccccch-hhhhhhcchhhcCCCCCceecCCCCcchhc
Confidence 46799999999999999999999 9999998875544 4699999999986643
No 33
>KOG0287|consensus
Probab=97.59 E-value=2.2e-05 Score=80.16 Aligned_cols=50 Identities=26% Similarity=0.587 Sum_probs=45.6
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccce
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRAL 252 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~l 252 (437)
|.-..|-||++-..-++|.||+|. ||.-|++........||.|+.++..-
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccchh
Confidence 345789999999999999999999 99999999999889999999998763
No 34
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.57 E-value=5.2e-05 Score=77.65 Aligned_cols=57 Identities=33% Similarity=0.839 Sum_probs=48.3
Q ss_pred CCCCCCCCccccccccccccCeEEECcCCccccHhhHHHHh--ccCCCCccccccccceE
Q psy6091 196 GCEDCEDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLR--YQANNCPICRAPFRALL 253 (437)
Q Consensus 196 ~d~d~ed~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~--~qs~~CPiCR~~I~~ll 253 (437)
+.++.+++...|+||-....-..++||+|. +|..|+-.++ ...+.|++||..-..++
T Consensus 53 SaddtDEen~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 53 SADDTDEENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred cccccccccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence 344556677899999999999999999999 9999998876 45689999999888766
No 35
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.52 E-value=8.3e-05 Score=59.95 Aligned_cols=47 Identities=28% Similarity=0.347 Sum_probs=39.2
Q ss_pred ccccccccccccCeEEECcCCccccHhhHHHHhcc-CCCCccccccccc
Q psy6091 204 GSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQ-ANNCPICRAPFRA 251 (437)
Q Consensus 204 ~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~q-s~~CPiCR~~I~~ 251 (437)
...|+||.+-..+++++||||. ++..|...|..+ ...||+||.++..
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 5689999999999999999999 999999999988 7899999999876
No 36
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.40 E-value=6.7e-05 Score=75.38 Aligned_cols=49 Identities=29% Similarity=0.571 Sum_probs=44.7
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
+....|-||-+..+-.++.+|||. ||.-|++........||+||.+...
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred hhHHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHHh
Confidence 456799999999999999999999 9999999998888999999998764
No 37
>KOG1039|consensus
Probab=97.34 E-value=8.3e-05 Score=76.56 Aligned_cols=52 Identities=33% Similarity=0.744 Sum_probs=43.1
Q ss_pred CCccccccccccccCeE-----E---ECcCCccccHhhHHHHh--cc-----CCCCccccccccceEE
Q psy6091 202 DGGSECVICMCDIRDTL-----I---LPCRHLCLCHSCADSLR--YQ-----ANNCPICRAPFRALLQ 254 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~v-----l---LPC~H~C~C~~Ca~~l~--~q-----s~~CPiCR~~I~~ll~ 254 (437)
..++.|.|||+...+.. + .+|.|. ||..|+..|+ .+ ...||+||.....++.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 34689999998777665 3 679999 9999999999 56 5799999998887663
No 38
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.33 E-value=0.00015 Score=73.66 Aligned_cols=46 Identities=33% Similarity=0.743 Sum_probs=34.7
Q ss_pred ccccccccc----ccC-eEEECcCCccccHhhHHHHhcc-CCCCccccccccc
Q psy6091 205 SECVICMCD----IRD-TLILPCRHLCLCHSCADSLRYQ-ANNCPICRAPFRA 251 (437)
Q Consensus 205 ~eC~ICl~~----~~d-~vlLPC~H~C~C~~Ca~~l~~q-s~~CPiCR~~I~~ 251 (437)
..|+||.+. +.. ..+-+|||. ||..|...++.. ...||+|+..+..
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~-~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCc-ccHHHHHHHhcCCCCCCCCCCCccch
Confidence 589999873 222 123389999 999999997644 4589999998775
No 39
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.26 E-value=0.0001 Score=57.29 Aligned_cols=45 Identities=40% Similarity=0.962 Sum_probs=39.5
Q ss_pred ccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 204 GSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 204 ~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
.-.|+.|......-+++||+|+ .|..|....+. +.||+|..+|..
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rY--ngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERY--NGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEccccccccccccccce-eeccccChhhc--cCCCCCCCcccC
Confidence 3478999988888999999999 99999988876 899999998863
No 40
>KOG0978|consensus
Probab=96.98 E-value=0.00014 Score=80.40 Aligned_cols=48 Identities=29% Similarity=0.751 Sum_probs=42.2
Q ss_pred CccccccccccccCeEEECcCCccccHhhHHHHhc-cCCCCccccccccc
Q psy6091 203 GGSECVICMCDIRDTLILPCRHLCLCHSCADSLRY-QANNCPICRAPFRA 251 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~-qs~~CPiCR~~I~~ 251 (437)
....|++|-+++.+++|.-|+|+ ||..|.+.... ...+||.|-+.|+.
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred hceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 45789999999999999999998 99999998754 34799999999875
No 41
>KOG4692|consensus
Probab=96.93 E-value=0.00037 Score=71.76 Aligned_cols=50 Identities=20% Similarity=0.566 Sum_probs=45.9
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccce
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRAL 252 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~l 252 (437)
.++..|+||+..+.++++-||+|. -|..|..+-....+.|=.|.+.|...
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVIDV 469 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeeeh
Confidence 456799999999999999999999 99999999999999999999988763
No 42
>KOG4159|consensus
Probab=96.78 E-value=0.00062 Score=71.45 Aligned_cols=51 Identities=29% Similarity=0.725 Sum_probs=46.0
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceE
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALL 253 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll 253 (437)
....+|.||+...-.++..||||. +|..|......+...||.||..+..+.
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e~~ 132 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVELP 132 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCcccccccccch
Confidence 456899999999999999999999 999998888888899999999998744
No 43
>KOG0828|consensus
Probab=96.62 E-value=0.00071 Score=72.12 Aligned_cols=48 Identities=33% Similarity=0.842 Sum_probs=37.7
Q ss_pred Cccccccccccc-----------------cCeEEECcCCccccHhhHHHHhcc-CCCCccccccccc
Q psy6091 203 GGSECVICMCDI-----------------RDTLILPCRHLCLCHSCADSLRYQ-ANNCPICRAPFRA 251 (437)
Q Consensus 203 ~~~eC~ICl~~~-----------------~d~vlLPC~H~C~C~~Ca~~l~~q-s~~CPiCR~~I~~ 251 (437)
....|+|||... ++-++-||.|. |...|...|... +-.||+||.++..
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 356899999621 22456699999 999999999984 4499999998764
No 44
>KOG0311|consensus
Probab=96.53 E-value=0.00028 Score=72.49 Aligned_cols=54 Identities=26% Similarity=0.571 Sum_probs=43.6
Q ss_pred ccccccccccccCeEEEC-cCCccccHhhHHHHhc-cCCCCccccccccceEEEEec
Q psy6091 204 GSECVICMCDIRDTLILP-CRHLCLCHSCADSLRY-QANNCPICRAPFRALLQIRAL 258 (437)
Q Consensus 204 ~~eC~ICl~~~~d~vlLP-C~H~C~C~~Ca~~l~~-qs~~CPiCR~~I~~ll~I~~~ 258 (437)
...|.|||+..+.++..+ |.|. ||..|.+.... ..+.||.||+...+-..++..
T Consensus 43 ~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~D 98 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSKRSLRID 98 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhccccccCCCC
Confidence 468999999888876654 9999 99999988654 457999999998877655543
No 45
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.26 E-value=0.0036 Score=52.79 Aligned_cols=32 Identities=25% Similarity=0.653 Sum_probs=26.9
Q ss_pred EEECcCCccccHhhHHHHhcc---CCCCcccccccc
Q psy6091 218 LILPCRHLCLCHSCADSLRYQ---ANNCPICRAPFR 250 (437)
Q Consensus 218 vlLPC~H~C~C~~Ca~~l~~q---s~~CPiCR~~I~ 250 (437)
++--|+|. |..-|+..|..+ ...||+||++..
T Consensus 48 v~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 48 VWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 55579998 999999999875 369999999764
No 46
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.87 E-value=0.0062 Score=45.97 Aligned_cols=40 Identities=33% Similarity=0.804 Sum_probs=32.7
Q ss_pred ccccccc--cccCeEEECcC-----CccccHhhHHHHhccC--CCCcccc
Q psy6091 206 ECVICMC--DIRDTLILPCR-----HLCLCHSCADSLRYQA--NNCPICR 246 (437)
Q Consensus 206 eC~ICl~--~~~d~vlLPC~-----H~C~C~~Ca~~l~~qs--~~CPiCR 246 (437)
.|.||++ ...+.++.||. |. +...|...|...+ ..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 4899996 56678899996 66 8999999998654 4899995
No 47
>KOG0804|consensus
Probab=95.84 E-value=0.0096 Score=63.13 Aligned_cols=45 Identities=24% Similarity=0.568 Sum_probs=35.4
Q ss_pred CccccccccccccC----eEEECcCCccccHhhHHHHhccCCCCcccccccc
Q psy6091 203 GGSECVICMCDIRD----TLILPCRHLCLCHSCADSLRYQANNCPICRAPFR 250 (437)
Q Consensus 203 ~~~eC~ICl~~~~d----~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~ 250 (437)
.-..|+|||++.-. .+..+|.|. |...|...|.. ..||+||---.
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hs-fh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHS-FHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccc-cchHHHhhccc--CcChhhhhhcC
Confidence 45789999975433 366789999 88899999954 89999997555
No 48
>KOG0825|consensus
Probab=95.66 E-value=0.0026 Score=70.93 Aligned_cols=51 Identities=25% Similarity=0.555 Sum_probs=40.6
Q ss_pred ccccccccccccCeEE---ECcCCccccHhhHHHHhccCCCCccccccccceEEE
Q psy6091 204 GSECVICMCDIRDTLI---LPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQI 255 (437)
Q Consensus 204 ~~eC~ICl~~~~d~vl---LPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I 255 (437)
...|.+|+....+-++ .+|.|. ||..|...|....+.||+||..+..++..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeeee
Confidence 3567777765555333 489999 99999999999999999999998776643
No 49
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=95.62 E-value=0.0042 Score=49.89 Aligned_cols=43 Identities=28% Similarity=0.830 Sum_probs=23.6
Q ss_pred ccccccccccccCeE-EECcCCccccHhhHHHHhccCCCCccccccc
Q psy6091 204 GSECVICMCDIRDTL-ILPCRHLCLCHSCADSLRYQANNCPICRAPF 249 (437)
Q Consensus 204 ~~eC~ICl~~~~d~v-lLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I 249 (437)
...|.+|.+..+.++ +.-|.|. ||..|...-. ...||+|+.+.
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~--~~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCI--GSECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS---B-TTTGGGGT--TTB-SSS--B-
T ss_pred hcCCcHHHHHhcCCceeccCccH-HHHHHhHHhc--CCCCCCcCChH
Confidence 467999999999885 6789999 9999997743 35799999876
No 50
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.97 E-value=0.012 Score=44.63 Aligned_cols=42 Identities=29% Similarity=0.857 Sum_probs=21.7
Q ss_pred cccccccc--cCeEEEC--cCCccccHhhHHHHhc-cCCCCccccccc
Q psy6091 207 CVICMCDI--RDTLILP--CRHLCLCHSCADSLRY-QANNCPICRAPF 249 (437)
Q Consensus 207 C~ICl~~~--~d~vlLP--C~H~C~C~~Ca~~l~~-qs~~CPiCR~~I 249 (437)
|++|++.. ++.-++| |++. +|..|...++. ...+||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 67777644 3445665 7888 99999999986 478999999874
No 51
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.83 E-value=0.013 Score=56.64 Aligned_cols=55 Identities=22% Similarity=0.444 Sum_probs=47.1
Q ss_pred CCCCccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceEEE
Q psy6091 200 CEDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQI 255 (437)
Q Consensus 200 ~ed~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I 255 (437)
.++--..|.||-.....+++.-|||. ||..|+..-......|-+|.+.-.+...+
T Consensus 192 ~e~IPF~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 192 GEKIPFLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFWV 246 (259)
T ss_pred CCCCceeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccceeH
Confidence 34455799999999999999999999 99999998878888999999987766543
No 52
>KOG0297|consensus
Probab=94.72 E-value=0.013 Score=61.34 Aligned_cols=89 Identities=24% Similarity=0.414 Sum_probs=60.6
Q ss_pred CCccccccccccccCeEE-ECcCCccccHhhHHHHhccCCCCccccccccceEEEEecccCCCCcc--CCCCCCCCCCCc
Q psy6091 202 DGGSECVICMCDIRDTLI-LPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQIRALQKNSSHVS--ETSSDNIPPGYD 278 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vl-LPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I~~~~~~~~~~~--~~~se~~ppgye 278 (437)
+.+..|.+|+.-..+++. ..|+|. ||..|...|......||.||..+.....+.........+. .-.......|..
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~c~~~~~GC~ 97 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRELLKLPIRCIFASRGCR 97 (391)
T ss_pred cccccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhhccCchHHHHHHHHhcccccccCCCCcc
Confidence 457899999999999888 599999 9999999999888899999998876554432211111100 011223344555
Q ss_pred ccchhhhhcCCCC
Q psy6091 279 AVSLIEALNGPCA 291 (437)
Q Consensus 279 ~vslleALnG~~~ 291 (437)
-.--+++|+|+..
T Consensus 98 ~~~~l~~~~~Hl~ 110 (391)
T KOG0297|consen 98 ADLELEALQGHLS 110 (391)
T ss_pred ccccHHHHHhHhc
Confidence 5555677777654
No 53
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.71 E-value=0.04 Score=54.55 Aligned_cols=54 Identities=20% Similarity=0.524 Sum_probs=42.3
Q ss_pred CCCccccccccccc----cCeEEECcCCccccHhhHHHHhccCCCCccccccccceEEEE
Q psy6091 201 EDGGSECVICMCDI----RDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQIR 256 (437)
Q Consensus 201 ed~~~eC~ICl~~~----~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I~ 256 (437)
......|+|+.... +-+.|.||||+ |+..+.+.+. ....||+|-.++...=.|.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k-~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELK-KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhc-ccccccccCCccccCCEEE
Confidence 44567899997544 34788899999 9999999995 4578999999998653333
No 54
>KOG1813|consensus
Probab=94.54 E-value=0.016 Score=58.65 Aligned_cols=54 Identities=20% Similarity=0.445 Sum_probs=46.7
Q ss_pred CCCCccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceEE
Q psy6091 200 CEDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQ 254 (437)
Q Consensus 200 ~ed~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~ 254 (437)
.+.-..-|.||-....+.|+--|+|. ||..|+..-......|++|.+.+.+...
T Consensus 237 ~~~~Pf~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~~ 290 (313)
T KOG1813|consen 237 IELLPFKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSFN 290 (313)
T ss_pred cccCCccccccccccccchhhcCCce-eehhhhccccccCCcceecccccccccc
Confidence 34445669999999999999999999 9999998887778999999999887663
No 55
>KOG4367|consensus
Probab=93.69 E-value=0.035 Score=58.98 Aligned_cols=36 Identities=36% Similarity=0.819 Sum_probs=31.8
Q ss_pred CccccccccccccCeEEECcCCccccHhhHHHHhccC
Q psy6091 203 GGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQA 239 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs 239 (437)
+...|+||-.-.++++||||+|. +|..|+.....++
T Consensus 3 eelkc~vc~~f~~epiil~c~h~-lc~~ca~~~~~~t 38 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHN-LCQACARNILVQT 38 (699)
T ss_pred ccccCceehhhccCceEeecccH-HHHHHHHhhcccC
Confidence 35689999999999999999999 9999999876554
No 56
>KOG3039|consensus
Probab=93.67 E-value=0.074 Score=52.98 Aligned_cols=58 Identities=17% Similarity=0.349 Sum_probs=46.6
Q ss_pred CccccccccccccC----eEEECcCCccccHhhHHHHhccCCCCccccccccceEEEEecccCC
Q psy6091 203 GGSECVICMCDIRD----TLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQIRALQKNS 262 (437)
Q Consensus 203 ~~~eC~ICl~~~~d----~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I~~~~~~~ 262 (437)
....|+||.+...+ ++|-||||+ +|.+|.+.|......||+|-.+...-- |...|+.+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkdrd-iI~LqrGG 281 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKDRD-IIGLQRGG 281 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCcccc-eEeeeccc
Confidence 45789999876666 577799999 999999999998999999999998644 33445443
No 57
>KOG1814|consensus
Probab=93.44 E-value=0.036 Score=58.44 Aligned_cols=33 Identities=30% Similarity=0.732 Sum_probs=28.1
Q ss_pred CccccccccccccC---eEEECcCCccccHhhHHHHh
Q psy6091 203 GGSECVICMCDIRD---TLILPCRHLCLCHSCADSLR 236 (437)
Q Consensus 203 ~~~eC~ICl~~~~d---~vlLPC~H~C~C~~Ca~~l~ 236 (437)
....|.||++...- .+++||+|+ ||..|.+...
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~ 218 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYF 218 (445)
T ss_pred hcccceeeehhhcCcceeeecccchH-HHHHHHHHHH
Confidence 46789999987655 789999999 9999998863
No 58
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.43 E-value=0.033 Score=63.72 Aligned_cols=49 Identities=27% Similarity=0.634 Sum_probs=36.8
Q ss_pred CCCcccccccccccc--C-----eEEECcCCccccHhhHHHHhccC--CCCcccccccc
Q psy6091 201 EDGGSECVICMCDIR--D-----TLILPCRHLCLCHSCADSLRYQA--NNCPICRAPFR 250 (437)
Q Consensus 201 ed~~~eC~ICl~~~~--d-----~vlLPC~H~C~C~~Ca~~l~~qs--~~CPiCR~~I~ 250 (437)
-....||.||++-.. + -..--|+|- |...|.-.|...+ ++||+||..|.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknK-FH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNK-FHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhh-hhHHHHHHHHHhcCCCCCCccccccc
Confidence 345689999986322 1 223359999 9999999998664 69999998875
No 59
>KOG2879|consensus
Probab=93.41 E-value=0.078 Score=53.41 Aligned_cols=51 Identities=25% Similarity=0.571 Sum_probs=42.3
Q ss_pred CCccccccccccccCe-EEECcCCccccHhhHHHHhccC--CCCccccccccceE
Q psy6091 202 DGGSECVICMCDIRDT-LILPCRHLCLCHSCADSLRYQA--NNCPICRAPFRALL 253 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~-vlLPC~H~C~C~~Ca~~l~~qs--~~CPiCR~~I~~ll 253 (437)
..+.+|++|-+.+..+ ++.+|+|. +|..|+..-+.+. -.||-|..++..+.
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVEPLQ 290 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCcchh
Confidence 4578999999988886 55679999 9999999887664 49999999887554
No 60
>KOG1001|consensus
Probab=93.29 E-value=0.036 Score=62.03 Aligned_cols=47 Identities=28% Similarity=0.631 Sum_probs=40.2
Q ss_pred cccccccccccCeEEECcCCccccHhhHHHHhccC--CCCccccccccceE
Q psy6091 205 SECVICMCDIRDTLILPCRHLCLCHSCADSLRYQA--NNCPICRAPFRALL 253 (437)
Q Consensus 205 ~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs--~~CPiCR~~I~~ll 253 (437)
..|.||++ ...+++.+|+|. +|.+|......+. ..||+||..+...-
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 79999999 888999999999 9999999876554 37999999887543
No 61
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=93.19 E-value=0.1 Score=48.74 Aligned_cols=56 Identities=21% Similarity=0.573 Sum_probs=39.5
Q ss_pred ccccccccccccCeEEECcC-------Cc-----cccHhhHHHHhcc-------------------------------CC
Q psy6091 204 GSECVICMCDIRDTLILPCR-------HL-----CLCHSCADSLRYQ-------------------------------AN 240 (437)
Q Consensus 204 ~~eC~ICl~~~~d~vlLPC~-------H~-----C~C~~Ca~~l~~q-------------------------------s~ 240 (437)
+-.|+|||+.+-++|||-|- -. .....|.+++... .-
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 35799999999999998653 22 1224677765321 12
Q ss_pred CCccccccccceEEEEecc
Q psy6091 241 NCPICRAPFRALLQIRALQ 259 (437)
Q Consensus 241 ~CPiCR~~I~~ll~I~~~~ 259 (437)
.||+||..|.++..+...+
T Consensus 82 ~CPLCRG~V~GWtvve~AR 100 (162)
T PF07800_consen 82 ACPLCRGEVKGWTVVEPAR 100 (162)
T ss_pred cCccccCceeceEEchHHH
Confidence 6999999999999775533
No 62
>KOG2660|consensus
Probab=92.72 E-value=0.028 Score=57.65 Aligned_cols=49 Identities=24% Similarity=0.541 Sum_probs=42.5
Q ss_pred ccccccccccccCeE-EECcCCccccHhhHHHHhccCCCCccccccccceE
Q psy6091 204 GSECVICMCDIRDTL-ILPCRHLCLCHSCADSLRYQANNCPICRAPFRALL 253 (437)
Q Consensus 204 ~~eC~ICl~~~~d~v-lLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll 253 (437)
...|.+|-.-..|+. +.-|-|. ||..|.-......+.||+|...|....
T Consensus 15 ~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred ceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCcc
Confidence 468999999888854 4559999 999999998888999999999998864
No 63
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.68 E-value=0.049 Score=56.34 Aligned_cols=47 Identities=26% Similarity=0.781 Sum_probs=34.4
Q ss_pred ccccccccccc--cCeEEE--CcCCccccHhhHHHHhccC-CCCccccccccc
Q psy6091 204 GSECVICMCDI--RDTLIL--PCRHLCLCHSCADSLRYQA-NNCPICRAPFRA 251 (437)
Q Consensus 204 ~~eC~ICl~~~--~d~vlL--PC~H~C~C~~Ca~~l~~qs-~~CPiCR~~I~~ 251 (437)
++.|+.|++.. .|--+. |||-. .|..|...++..- .+||-||.....
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 34599999743 333444 56776 8999999988654 599999987764
No 64
>KOG3002|consensus
Probab=92.36 E-value=0.079 Score=54.00 Aligned_cols=46 Identities=30% Similarity=0.832 Sum_probs=37.2
Q ss_pred CCccccccccccccCeEEECc--CCccccHhhHHHHhccCCCCccccccccce
Q psy6091 202 DGGSECVICMCDIRDTLILPC--RHLCLCHSCADSLRYQANNCPICRAPFRAL 252 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC--~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~l 252 (437)
..-.+|+||.....-.++ -| ||+ .|..|...+. ++||.||.+|+.+
T Consensus 46 ~~lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~---~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVS---NKCPTCRLPIGNI 93 (299)
T ss_pred hhhccCchhhccCcccce-ecCCCcE-ehhhhhhhhc---ccCCccccccccH
Confidence 346799999987776654 46 799 9999997663 8999999999944
No 65
>KOG4739|consensus
Probab=92.02 E-value=0.067 Score=52.76 Aligned_cols=41 Identities=27% Similarity=0.844 Sum_probs=29.9
Q ss_pred cccccc--cccCeEEECcCCccccHhhHHHHhccCCCCcccccccc
Q psy6091 207 CVICMC--DIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFR 250 (437)
Q Consensus 207 C~ICl~--~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~ 250 (437)
|--|+- ....--|.-|+|+ ||..|...-.. ..||+||++|.
T Consensus 6 Cn~C~~~~~~~~f~LTaC~Hv-fC~~C~k~~~~--~~C~lCkk~ir 48 (233)
T KOG4739|consen 6 CNKCFRFPSQDPFFLTACRHV-FCEPCLKASSP--DVCPLCKKSIR 48 (233)
T ss_pred eccccccCCCCceeeeechhh-hhhhhcccCCc--cccccccceee
Confidence 555653 3333466789999 99999987643 39999999954
No 66
>KOG1002|consensus
Probab=91.17 E-value=0.067 Score=58.04 Aligned_cols=49 Identities=24% Similarity=0.643 Sum_probs=40.1
Q ss_pred CCCccccccccccccCeEEECcCCccccHhhHHHHhcc-----CCCCcccccccc
Q psy6091 201 EDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQ-----ANNCPICRAPFR 250 (437)
Q Consensus 201 ed~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~q-----s~~CPiCR~~I~ 250 (437)
+.+..+|.+|.+...+.+.-.|-|. ||.-|....... .-+||+|...+.
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 3456799999999999999999999 999999665432 248999988654
No 67
>KOG4185|consensus
Probab=90.47 E-value=0.16 Score=50.49 Aligned_cols=44 Identities=36% Similarity=0.808 Sum_probs=34.8
Q ss_pred cccccccccccC------eEEECcCCccccHhhHHHHhccC-CCCccccccc
Q psy6091 205 SECVICMCDIRD------TLILPCRHLCLCHSCADSLRYQA-NNCPICRAPF 249 (437)
Q Consensus 205 ~eC~ICl~~~~d------~vlLPC~H~C~C~~Ca~~l~~qs-~~CPiCR~~I 249 (437)
.+|.||-+...+ +.+|-|||. +|..|+..+.... ..||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~-~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHT-ICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCce-ehHhHHHHHhcCceeeccCCCCcc
Confidence 578888543333 577789999 9999999997654 5899999986
No 68
>KOG4445|consensus
Probab=90.34 E-value=0.1 Score=53.27 Aligned_cols=48 Identities=25% Similarity=0.708 Sum_probs=34.2
Q ss_pred CccccccccccccC---eEEECcCCccccHhhHHH------------------Hhcc-----CCCCccccccccc
Q psy6091 203 GGSECVICMCDIRD---TLILPCRHLCLCHSCADS------------------LRYQ-----ANNCPICRAPFRA 251 (437)
Q Consensus 203 ~~~eC~ICl~~~~d---~vlLPC~H~C~C~~Ca~~------------------l~~q-----s~~CPiCR~~I~~ 251 (437)
....|+|||-...+ .++.+|.|. |...|... |+.. ...|||||-.|..
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy-~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHY-MHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 35689999865544 577899999 88888733 2221 2379999998864
No 69
>KOG3800|consensus
Probab=90.06 E-value=0.2 Score=50.80 Aligned_cols=44 Identities=34% Similarity=0.714 Sum_probs=31.7
Q ss_pred cccccccc-----ccCeEEECcCCccccHhhHHHHhccC-CCCcccccccc
Q psy6091 206 ECVICMCD-----IRDTLILPCRHLCLCHSCADSLRYQA-NNCPICRAPFR 250 (437)
Q Consensus 206 eC~ICl~~-----~~d~vlLPC~H~C~C~~Ca~~l~~qs-~~CPiCR~~I~ 250 (437)
.|++|-+. .....+=||+|. +|.+|...+.... ..||.|-..+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~-lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHR-LCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccch-HHHHHHHHHHhcCCCCCCcccchhh
Confidence 47777532 222344599999 9999999997654 59999987544
No 70
>KOG2932|consensus
Probab=89.23 E-value=0.095 Score=53.70 Aligned_cols=49 Identities=29% Similarity=0.606 Sum_probs=35.3
Q ss_pred ccccccccc-cccCeEEECcCCccccHhhHHHHhccCCCCccccccccceEEE
Q psy6091 204 GSECVICMC-DIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQI 255 (437)
Q Consensus 204 ~~eC~ICl~-~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I 255 (437)
-.-|.-|-- ...--.++||.|+ ||.+|+..-. .+.||.|-..|..+-+|
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHv-FCl~CAr~~~--dK~Cp~C~d~VqrIeq~ 139 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHV-FCLECARSDS--DKICPLCDDRVQRIEQI 139 (389)
T ss_pred eEeecccCCcceeeecccccchh-hhhhhhhcCc--cccCcCcccHHHHHHHh
Confidence 456777732 2222457899999 9999997653 47999999988776554
No 71
>KOG0827|consensus
Probab=89.14 E-value=0.25 Score=51.99 Aligned_cols=51 Identities=24% Similarity=0.503 Sum_probs=37.1
Q ss_pred ccccccccccccC---e-EEECcCCccccHhhHHHHhccC---CCCccccccccceEEE
Q psy6091 204 GSECVICMCDIRD---T-LILPCRHLCLCHSCADSLRYQA---NNCPICRAPFRALLQI 255 (437)
Q Consensus 204 ~~eC~ICl~~~~d---~-vlLPC~H~C~C~~Ca~~l~~qs---~~CPiCR~~I~~ll~I 255 (437)
..+|.||-+-.-. . -+.-|||. |...|..+|..-. ..|||||..+....-+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhi-fh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHI-FHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred cceeeEeccCCccccccccccchhhH-HHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 4689999543222 2 34459999 9999999998653 4899999776666555
No 72
>KOG1428|consensus
Probab=89.01 E-value=0.22 Score=59.41 Aligned_cols=53 Identities=23% Similarity=0.647 Sum_probs=41.0
Q ss_pred CCCCccccccccccccC---eEEECcCCccccHhhHHHHhcc----------CCCCccccccccceE
Q psy6091 200 CEDGGSECVICMCDIRD---TLILPCRHLCLCHSCADSLRYQ----------ANNCPICRAPFRALL 253 (437)
Q Consensus 200 ~ed~~~eC~ICl~~~~d---~vlLPC~H~C~C~~Ca~~l~~q----------s~~CPiCR~~I~~ll 253 (437)
..|.++.|+||+.+.-. ++-|-|+|+ |...|.+.+... .-.||+|..+|....
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIV 3547 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHH
Confidence 45678899999975543 678999999 999998776432 248999999998654
No 73
>KOG2113|consensus
Probab=88.83 E-value=0.34 Score=49.88 Aligned_cols=53 Identities=11% Similarity=-0.036 Sum_probs=46.4
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceEEEE
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQIR 256 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I~ 256 (437)
-...+|..|-.....+++.||+|.-+|.+|+. ...+..||+|-.-+-.+++|.
T Consensus 341 ~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~~~~~i~ 393 (394)
T KOG2113|consen 341 MSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDHTLVPIN 393 (394)
T ss_pred hhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccceeeeecC
Confidence 35689999999999999999999999999998 334589999999998888875
No 74
>KOG1645|consensus
Probab=88.53 E-value=0.31 Score=51.57 Aligned_cols=46 Identities=26% Similarity=0.660 Sum_probs=36.4
Q ss_pred CccccccccccccC-----eEEECcCCccccHhhHHHHhcc--CCCCccccccc
Q psy6091 203 GGSECVICMCDIRD-----TLILPCRHLCLCHSCADSLRYQ--ANNCPICRAPF 249 (437)
Q Consensus 203 ~~~eC~ICl~~~~d-----~vlLPC~H~C~C~~Ca~~l~~q--s~~CPiCR~~I 249 (437)
.+..|+||++.... .+.+-|+|+ |=..|.+.|.-+ ...||.|...-
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghl-Fgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHL-FGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecCceEEeeeccccc-ccHHHHHHHHhhhhhhhCcccCChh
Confidence 46799999974433 577889999 999999999854 35899997653
No 75
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=88.46 E-value=0.15 Score=50.76 Aligned_cols=46 Identities=33% Similarity=0.756 Sum_probs=34.3
Q ss_pred ccccccccc-----cccCeEEEC-cCCccccHhhHHHHhccC-CCCc--ccccccc
Q psy6091 204 GSECVICMC-----DIRDTLILP-CRHLCLCHSCADSLRYQA-NNCP--ICRAPFR 250 (437)
Q Consensus 204 ~~eC~ICl~-----~~~d~vlLP-C~H~C~C~~Ca~~l~~qs-~~CP--iCR~~I~ 250 (437)
+..|+||.. .....++-| |-|. +|..|...+.... ..|| .|.+-++
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 458999964 223345557 9999 9999999987765 4899 8876544
No 76
>KOG1734|consensus
Probab=87.70 E-value=0.22 Score=50.33 Aligned_cols=48 Identities=25% Similarity=0.590 Sum_probs=37.7
Q ss_pred CCcccccccccccc----------CeEEECcCCccccHhhHHHHhcc--CCCCcccccccc
Q psy6091 202 DGGSECVICMCDIR----------DTLILPCRHLCLCHSCADSLRYQ--ANNCPICRAPFR 250 (437)
Q Consensus 202 d~~~eC~ICl~~~~----------d~vlLPC~H~C~C~~Ca~~l~~q--s~~CPiCR~~I~ 250 (437)
-++..|.||-...- ++.-|.|+|. |...|.+.|..- .+.||-|...|.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhh
Confidence 35679999953222 3556899999 999999999764 579999999886
No 77
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=86.97 E-value=0.54 Score=44.11 Aligned_cols=49 Identities=18% Similarity=0.431 Sum_probs=36.0
Q ss_pred CCCccccccccccccCeEEECcCCcc----ccHhhHHHHhccC--CCCcccccccc
Q psy6091 201 EDGGSECVICMCDIRDTLILPCRHLC----LCHSCADSLRYQA--NNCPICRAPFR 250 (437)
Q Consensus 201 ed~~~eC~ICl~~~~d~vlLPC~H~C----~C~~Ca~~l~~qs--~~CPiCR~~I~ 250 (437)
...++.|-||++...+ ...||+-.. ...+|.+.|...+ ..|++|+++..
T Consensus 5 s~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 5 SLMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 4567899999988653 345665432 3577999998764 59999999875
No 78
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=86.84 E-value=0.32 Score=44.45 Aligned_cols=49 Identities=27% Similarity=0.615 Sum_probs=39.8
Q ss_pred CccccccccccccCeEEE----CcCCccccHhhHHHHhccC---CCCccccccccce
Q psy6091 203 GGSECVICMCDIRDTLIL----PCRHLCLCHSCADSLRYQA---NNCPICRAPFRAL 252 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlL----PC~H~C~C~~Ca~~l~~qs---~~CPiCR~~I~~l 252 (437)
.--+|-||.+.-.+..+| =||-. +|..|...||+.. ..||+|+.++.+-
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~-iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYS-ICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchH-HHHHHHHHHHHHcccCCCCCccccccccc
Confidence 457999999988887776 37766 9999999888764 5999999998753
No 79
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=86.60 E-value=0.7 Score=48.38 Aligned_cols=47 Identities=30% Similarity=0.685 Sum_probs=31.2
Q ss_pred CccccccccccccCeEEE-----------------C-----cCCccccHhhHHHHh-------------ccCCCCccccc
Q psy6091 203 GGSECVICMCDIRDTLIL-----------------P-----CRHLCLCHSCADSLR-------------YQANNCPICRA 247 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlL-----------------P-----C~H~C~C~~Ca~~l~-------------~qs~~CPiCR~ 247 (437)
+.+.|.-||....++.|. + ||-| -|.+|...|. ..+..||+||+
T Consensus 270 e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPm-WC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa 348 (358)
T PF10272_consen 270 ELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPM-WCLECMGKWFASRQDQQHPETWLSGKCPCPTCRA 348 (358)
T ss_pred ccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccch-HHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcc
Confidence 345677777777776665 1 3444 4888987763 33458999999
Q ss_pred ccc
Q psy6091 248 PFR 250 (437)
Q Consensus 248 ~I~ 250 (437)
.+=
T Consensus 349 ~FC 351 (358)
T PF10272_consen 349 KFC 351 (358)
T ss_pred cce
Confidence 864
No 80
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=86.49 E-value=0.25 Score=37.69 Aligned_cols=44 Identities=27% Similarity=0.783 Sum_probs=25.4
Q ss_pred ccccccccccCeEEECcC-CccccHhhHHHHhccCCCCccccccccce
Q psy6091 206 ECVICMCDIRDTLILPCR-HLCLCHSCADSLRYQANNCPICRAPFRAL 252 (437)
Q Consensus 206 eC~ICl~~~~d~vlLPC~-H~C~C~~Ca~~l~~qs~~CPiCR~~I~~l 252 (437)
.|.-|.-..+.. +-|. |. +|..|...|...+..||||..++..-
T Consensus 4 nCKsCWf~~k~L--i~C~dHY-LCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFANKGL--IKCSDHY-LCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S--SSE--EE-SS-E-EEHHHHHHT-SSSSEETTTTEE----
T ss_pred cChhhhhcCCCe--eeecchh-HHHHHHHHHhccccCCCcccCcCccc
Confidence 466676444443 3454 66 99999999999999999999987653
No 81
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=86.18 E-value=0.18 Score=40.71 Aligned_cols=46 Identities=24% Similarity=0.556 Sum_probs=21.6
Q ss_pred cccccccccccc-C---e-EEE---CcCCccccHhhHHHHhcc-----------CCCCcccccccc
Q psy6091 204 GSECVICMCDIR-D---T-LIL---PCRHLCLCHSCADSLRYQ-----------ANNCPICRAPFR 250 (437)
Q Consensus 204 ~~eC~ICl~~~~-d---~-vlL---PC~H~C~C~~Ca~~l~~q-----------s~~CPiCR~~I~ 250 (437)
..+|.||++..- + + ++- .|++. |...|...|... ...||.|+++|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~-fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKK-FHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCH-HHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 358999997543 2 1 111 47776 888999998642 126999999875
No 82
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.01 E-value=0.33 Score=49.71 Aligned_cols=42 Identities=29% Similarity=0.880 Sum_probs=34.5
Q ss_pred cccccccccccCeEEEC-cCCccccHhhHHHHhccC-CCCccccc
Q psy6091 205 SECVICMCDIRDTLILP-CRHLCLCHSCADSLRYQA-NNCPICRA 247 (437)
Q Consensus 205 ~eC~ICl~~~~d~vlLP-C~H~C~C~~Ca~~l~~qs-~~CPiCR~ 247 (437)
..|+.|..-.++.+-.| |+|. ||.+|....+..+ -.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~-fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHT-FCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccch-HHHHHHhhhhhhccccCCCccc
Confidence 78999988777766554 8888 9999999876654 59999987
No 83
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=85.60 E-value=0.75 Score=38.78 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=28.1
Q ss_pred EEECcCCccccHhhHHHHhccCCCCcccccccc
Q psy6091 218 LILPCRHLCLCHSCADSLRYQANNCPICRAPFR 250 (437)
Q Consensus 218 vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~ 250 (437)
+.--|.|. |..-|...|....+.||+||+...
T Consensus 50 ~wG~CnHa-FH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 50 VWGVCNHA-FHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred EEEecchH-HHHHHHHHHHhhCCCCCCCCceeE
Confidence 34469999 999999999999999999999764
No 84
>PHA03096 p28-like protein; Provisional
Probab=85.47 E-value=0.4 Score=48.62 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=30.4
Q ss_pred ccccccccccc--------CeEEECcCCccccHhhHHHHhccC---CCCccccc
Q psy6091 205 SECVICMCDIR--------DTLILPCRHLCLCHSCADSLRYQA---NNCPICRA 247 (437)
Q Consensus 205 ~eC~ICl~~~~--------d~vlLPC~H~C~C~~Ca~~l~~qs---~~CPiCR~ 247 (437)
..|-|||+... .-++--|.|. ||..|...|+... ..||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~-fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHE-FNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcH-HHHHHHHHHHHhhhhcccCccccc
Confidence 78999997433 2456679999 9999999998643 34444444
No 85
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=84.93 E-value=0.48 Score=43.26 Aligned_cols=33 Identities=24% Similarity=0.607 Sum_probs=27.3
Q ss_pred ccccccccccccC---eEEECcC------CccccHhhHHHHhc
Q psy6091 204 GSECVICMCDIRD---TLILPCR------HLCLCHSCADSLRY 237 (437)
Q Consensus 204 ~~eC~ICl~~~~d---~vlLPC~------H~C~C~~Ca~~l~~ 237 (437)
..||.||++..-+ ++.++|+ || ||..|.+.|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkm-fc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKM-FCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHH-HHHHHHHHHHh
Confidence 5799999986655 7888998 56 99999999953
No 86
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=82.61 E-value=1.2 Score=34.76 Aligned_cols=41 Identities=17% Similarity=0.337 Sum_probs=28.5
Q ss_pred CccccccccccccCeEEE-CcCCccccHhhHHHHhc--cCCCCcc
Q psy6091 203 GGSECVICMCDIRDTLIL-PCRHLCLCHSCADSLRY--QANNCPI 244 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlL-PC~H~C~C~~Ca~~l~~--qs~~CPi 244 (437)
....|+|.+....+++.- -|+|. |..+.+..+.. ....||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~-fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHT-FEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--E-EEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCe-ecHHHHHHHHHhcCCCCCCC
Confidence 457899999999998875 89999 99999999983 3458998
No 87
>PHA02862 5L protein; Provisional
Probab=82.55 E-value=1.1 Score=41.55 Aligned_cols=46 Identities=15% Similarity=0.339 Sum_probs=33.5
Q ss_pred ccccccccccccCeEEECcCCcc----ccHhhHHHHhccC--CCCcccccccc
Q psy6091 204 GSECVICMCDIRDTLILPCRHLC----LCHSCADSLRYQA--NNCPICRAPFR 250 (437)
Q Consensus 204 ~~eC~ICl~~~~d~vlLPC~H~C----~C~~Ca~~l~~qs--~~CPiCR~~I~ 250 (437)
+..|-||++...+. +-||+-.. ....|...|...+ ..|++|+.+..
T Consensus 2 ~diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 56899999876544 46665321 4578999998654 58999999885
No 88
>KOG3842|consensus
Probab=81.71 E-value=1 Score=46.57 Aligned_cols=36 Identities=14% Similarity=0.369 Sum_probs=22.0
Q ss_pred eccCeeeeEeccCc----CCCceeEEEEEEeccCCeEEEEEE
Q psy6091 27 IRKESLRFVKVNDE----SQRQVYNIEFIFDCDVPCSITVHF 64 (437)
Q Consensus 27 IrKdSlRlv~~~~~----~~~~~y~v~FtFDA~~~csItIyf 64 (437)
|++.++-.+-.+.. .+.+.+.|+|+.+... +|-|-|
T Consensus 63 vK~~tvh~vstpq~sKai~~k~qHsiSytlsrnq--sVvvEY 102 (429)
T KOG3842|consen 63 VKPSTVHIVSTPQASKAISDKGQHSISYTLSRNQ--SVVVEY 102 (429)
T ss_pred cccceeEEecChhhhhhhhccccceEEEEecCCc--eEEEEe
Confidence 45566666554411 2567888888888776 444444
No 89
>KOG0826|consensus
Probab=80.51 E-value=1.2 Score=46.17 Aligned_cols=48 Identities=19% Similarity=0.473 Sum_probs=37.7
Q ss_pred CCCCccccccccccccCeEEECc-CCccccHhhHHHHhccCCCCcccccc
Q psy6091 200 CEDGGSECVICMCDIRDTLILPC-RHLCLCHSCADSLRYQANNCPICRAP 248 (437)
Q Consensus 200 ~ed~~~eC~ICl~~~~d~vlLPC-~H~C~C~~Ca~~l~~qs~~CPiCR~~ 248 (437)
.......|+||+-...+..++-- |-+ ||..|+......-+.||+=..+
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyV-fCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYV-FCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceE-EeHHHHHHHHHhcCCCCccCCc
Confidence 34567899999988888666555 666 9999999998888999984443
No 90
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=77.04 E-value=0.77 Score=48.55 Aligned_cols=48 Identities=23% Similarity=0.578 Sum_probs=0.0
Q ss_pred Ccccccccccc-------------------ccCeEEECcCCccccHhhHHHHhcc---------CCCCccccccccc
Q psy6091 203 GGSECVICMCD-------------------IRDTLILPCRHLCLCHSCADSLRYQ---------ANNCPICRAPFRA 251 (437)
Q Consensus 203 ~~~eC~ICl~~-------------------~~d~vlLPC~H~C~C~~Ca~~l~~q---------s~~CPiCR~~I~~ 251 (437)
...+|++|+.. +...++-||||+| -...+.-|... ...||+|-.++..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~-SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVC-SEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeeccccccc-chhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 47899999742 2224678999993 44455555432 1489999998874
No 91
>KOG4265|consensus
Probab=76.95 E-value=2.1 Score=44.65 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.4
Q ss_pred CCCCcceeeeeeeeccCeeee
Q psy6091 14 SNEPYKTLKALINIRKESLRF 34 (437)
Q Consensus 14 ~~e~~~tlrn~VNIrKdSlRl 34 (437)
.|+.++||||+||++|+++++
T Consensus 107 ~~~~av~i~~d~~l~k~~~~l 127 (349)
T KOG4265|consen 107 LHQKAVTIRNDVNLDKETLRL 127 (349)
T ss_pred ccccceeccchhhcccceEEe
Confidence 388999999999999996665
No 92
>KOG4362|consensus
Probab=76.59 E-value=0.66 Score=52.04 Aligned_cols=46 Identities=24% Similarity=0.696 Sum_probs=39.6
Q ss_pred ccccccccccccCeEEECcCCccccHhhHHHHhccC---CCCcccccccc
Q psy6091 204 GSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQA---NNCPICRAPFR 250 (437)
Q Consensus 204 ~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs---~~CPiCR~~I~ 250 (437)
..+|.||+....+.+.+-|.|. ||..|......+. ..||+|+..+.
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~-~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHI-FLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEeeccchhhhhHH-HHhhhhhceeeccCccccchhhhhhhh
Confidence 4799999999999999999999 9999998876654 48999996654
No 93
>KOG1493|consensus
Probab=75.50 E-value=0.87 Score=38.10 Aligned_cols=29 Identities=24% Similarity=0.660 Sum_probs=23.8
Q ss_pred CcCCccccHhhHHHHhccC---CCCcccccccc
Q psy6091 221 PCRHLCLCHSCADSLRYQA---NNCPICRAPFR 250 (437)
Q Consensus 221 PC~H~C~C~~Ca~~l~~qs---~~CPiCR~~I~ 250 (437)
-|.|+ |-.-|...|.... ..||+||+...
T Consensus 50 ~C~h~-fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 50 YCLHA-FHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHH-HHHHHHHHHhcCccccccCCcchheeE
Confidence 59998 9999999997542 58999999753
No 94
>KOG2930|consensus
Probab=74.41 E-value=1.9 Score=38.06 Aligned_cols=28 Identities=21% Similarity=0.428 Sum_probs=25.7
Q ss_pred ECcCCccccHhhHHHHhccCCCCcccccc
Q psy6091 220 LPCRHLCLCHSCADSLRYQANNCPICRAP 248 (437)
Q Consensus 220 LPC~H~C~C~~Ca~~l~~qs~~CPiCR~~ 248 (437)
--|+|. |..-|...|..+.+.||+|.+.
T Consensus 79 G~CNHa-FH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 79 GVCNHA-FHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eecchH-HHHHHHHHHHhhcCcCCCcCcc
Confidence 369999 9999999999999999999875
No 95
>KOG2113|consensus
Probab=72.83 E-value=0.95 Score=46.73 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=47.5
Q ss_pred CccccccccccccCeEEECcCCccccHhhHHHHhcc-CCCCccccccccceEEEEec
Q psy6091 203 GGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQ-ANNCPICRAPFRALLQIRAL 258 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~q-s~~CPiCR~~I~~ll~I~~~ 258 (437)
..-.|++|+.+..-..+.+|+|-.||..|+-....+ ...|+||-..+....+|...
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i~d~ 191 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQIHDT 191 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhccccC
Confidence 456899999999999999999999999998777444 45699999999988888665
No 96
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=70.29 E-value=2.6 Score=35.06 Aligned_cols=30 Identities=23% Similarity=0.685 Sum_probs=23.2
Q ss_pred Ccccccccccccc--CeEEECcCCccccHhhHH
Q psy6091 203 GGSECVICMCDIR--DTLILPCRHLCLCHSCAD 233 (437)
Q Consensus 203 ~~~eC~ICl~~~~--d~vlLPC~H~C~C~~Ca~ 233 (437)
.+..|.+|-.... ..++.||||. ++..|++
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 3567999976444 4678899998 8999974
No 97
>KOG1940|consensus
Probab=69.06 E-value=2.6 Score=42.82 Aligned_cols=45 Identities=27% Similarity=0.652 Sum_probs=37.3
Q ss_pred cccccccc----cccCeEEECcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 205 SECVICMC----DIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 205 ~eC~ICl~----~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
..|+||.+ ...++.+++|+|. +-..|.+.+....-.||+|.+ +..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~-~h~~cf~e~~~~~y~CP~C~~-~~d 207 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHY-MHSRCFEEMICEGYTCPICSK-PGD 207 (276)
T ss_pred CCCchhHHHhccccccCCccCcccc-hHHHHHHHHhccCCCCCcccc-hHH
Confidence 34999975 4556889999999 889999999887789999999 544
No 98
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=68.56 E-value=3.4 Score=30.85 Aligned_cols=39 Identities=33% Similarity=0.768 Sum_probs=24.4
Q ss_pred cccccccccC--eEEECcCCcc----ccHhhHHHHhcc--CCCCccc
Q psy6091 207 CVICMCDIRD--TLILPCRHLC----LCHSCADSLRYQ--ANNCPIC 245 (437)
Q Consensus 207 C~ICl~~~~d--~vlLPC~H~C----~C~~Ca~~l~~q--s~~CPiC 245 (437)
|-||++.... .++.||+=.- ....|+..|... ...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 7899865433 6888987432 467899999864 4579888
No 99
>KOG3899|consensus
Probab=67.31 E-value=3.2 Score=42.62 Aligned_cols=28 Identities=39% Similarity=0.990 Sum_probs=21.2
Q ss_pred cCCccccHhhHHHH-------------hccCCCCcccccccc
Q psy6091 222 CRHLCLCHSCADSL-------------RYQANNCPICRAPFR 250 (437)
Q Consensus 222 C~H~C~C~~Ca~~l-------------~~qs~~CPiCR~~I~ 250 (437)
||.+ -|.+|...| ..++..||+||+.+-
T Consensus 325 crp~-wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPL-WCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccH-HHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 6666 688998765 345679999999764
No 100
>PLN02189 cellulose synthase
Probab=67.21 E-value=3.9 Score=48.13 Aligned_cols=51 Identities=31% Similarity=0.812 Sum_probs=37.2
Q ss_pred CCcccccccccccc----CeEEECcCCcc---ccHhhHHHHhcc-CCCCccccccccceE
Q psy6091 202 DGGSECVICMCDIR----DTLILPCRHLC---LCHSCADSLRYQ-ANNCPICRAPFRALL 253 (437)
Q Consensus 202 d~~~eC~ICl~~~~----d~vlLPC~H~C---~C~~Ca~~l~~q-s~~CPiCR~~I~~ll 253 (437)
-+...|.||-+..- .-++..|. .| .|..|.+--+.. ++.||.|++..+...
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~-~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACN-ECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeec-cCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 35669999987633 23566663 45 999999887765 469999999988443
No 101
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=67.08 E-value=1.7 Score=43.51 Aligned_cols=53 Identities=21% Similarity=0.393 Sum_probs=29.5
Q ss_pred CccccccccccccCeEEEC-----cCCccccHhhHHHHhccCCCCccccccccceEEEE
Q psy6091 203 GGSECVICMCDIRDTLILP-----CRHLCLCHSCADSLRYQANNCPICRAPFRALLQIR 256 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlLP-----C~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I~ 256 (437)
....|+||=+.+.-.++.. =||+ .|.-|.-.|+.....||.|-..-..-+..-
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 4579999998887776665 3677 999999999999999999998877666553
No 102
>KOG0298|consensus
Probab=64.09 E-value=1.8 Score=51.53 Aligned_cols=49 Identities=29% Similarity=0.598 Sum_probs=40.7
Q ss_pred cccccccccccc-CeEEECcCCccccHhhHHHHhccCCCCccccccccceE
Q psy6091 204 GSECVICMCDIR-DTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALL 253 (437)
Q Consensus 204 ~~eC~ICl~~~~-d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll 253 (437)
...|.||++..+ --.+.-|+|. +|..|...|...+..||+|....+++.
T Consensus 1153 ~~~c~ic~dil~~~~~I~~cgh~-~c~~c~~~~l~~~s~~~~~ksi~~dfg 1202 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIAGCGHE-PCCRCDELWLYASSRCPICKSIKGDFG 1202 (1394)
T ss_pred ccchHHHHHHHHhcCCeeeechh-HhhhHHHHHHHHhccCcchhhhhhhhc
Confidence 458999998877 4566779997 999999999999999999996555543
No 103
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=62.60 E-value=6 Score=29.95 Aligned_cols=43 Identities=30% Similarity=0.620 Sum_probs=18.0
Q ss_pred cccccccccccCe-EEECcCCccccHhhHHHHh--ccC--CCCcccccc
Q psy6091 205 SECVICMCDIRDT-LILPCRHLCLCHSCADSLR--YQA--NNCPICRAP 248 (437)
Q Consensus 205 ~eC~ICl~~~~d~-vlLPC~H~C~C~~Ca~~l~--~qs--~~CPiCR~~ 248 (437)
..|+|.+.....+ .-.-|.|+ -|.+=..-+. .+. =+||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~-~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHL-QCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCccc-ceECHHHHHHHhhccCCeECcCCcCc
Confidence 4688888666654 44579998 5543222221 222 379999874
No 104
>KOG1941|consensus
Probab=62.49 E-value=1.8 Score=45.95 Aligned_cols=49 Identities=24% Similarity=0.527 Sum_probs=37.1
Q ss_pred CCCccccccccc----cccCeEEECcCCccccHhhHHHHhccC--CCCcccccccc
Q psy6091 201 EDGGSECVICMC----DIRDTLILPCRHLCLCHSCADSLRYQA--NNCPICRAPFR 250 (437)
Q Consensus 201 ed~~~eC~ICl~----~~~d~vlLPC~H~C~C~~Ca~~l~~qs--~~CPiCR~~I~ 250 (437)
++....|-.|=+ .....-.|||.|. |...|+..+..+. ..||-||+-+.
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCsHI-fH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCSHI-FHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchhHH-HHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 446778999954 3344567999999 9999999887653 59999995443
No 105
>KOG3161|consensus
Probab=59.00 E-value=3.1 Score=46.60 Aligned_cols=37 Identities=30% Similarity=0.698 Sum_probs=29.1
Q ss_pred ccccccccc----cccCeEEECcCCccccHhhHHHHhccCCCCc
Q psy6091 204 GSECVICMC----DIRDTLILPCRHLCLCHSCADSLRYQANNCP 243 (437)
Q Consensus 204 ~~eC~ICl~----~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CP 243 (437)
-..|.||+. .....+.|-|||. .|..|++.+-. ..||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn--~scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYN--ASCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccch-HHHHHHHhHhh--ccCC
Confidence 357999965 4445788889999 99999999965 5677
No 106
>KOG3799|consensus
Probab=58.58 E-value=2.1 Score=39.43 Aligned_cols=46 Identities=30% Similarity=0.797 Sum_probs=28.4
Q ss_pred Cccccccccc-cccCeEEECcCCcc------ccHhhHHHHhccCC----CCccccccccce
Q psy6091 203 GGSECVICMC-DIRDTLILPCRHLC------LCHSCADSLRYQAN----NCPICRAPFRAL 252 (437)
Q Consensus 203 ~~~eC~ICl~-~~~d~vlLPC~H~C------~C~~Ca~~l~~qs~----~CPiCR~~I~~l 252 (437)
.+..|-||+- ...| -|||.| +|..|--.+...++ .|-.||....-|
T Consensus 64 ddatC~IC~KTKFAD----G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il 120 (169)
T KOG3799|consen 64 DDATCGICHKTKFAD----GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEIL 120 (169)
T ss_pred cCcchhhhhhccccc----ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHH
Confidence 3568999984 3333 489986 45555544444433 577887766533
No 107
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=56.45 E-value=7.9 Score=44.61 Aligned_cols=52 Identities=23% Similarity=0.564 Sum_probs=39.2
Q ss_pred Ccccccccccc--ccCeEEECcCCcc----ccHhhHHHHhccC--CCCccccccccceEEE
Q psy6091 203 GGSECVICMCD--IRDTLILPCRHLC----LCHSCADSLRYQA--NNCPICRAPFRALLQI 255 (437)
Q Consensus 203 ~~~eC~ICl~~--~~d~vlLPC~H~C----~C~~Ca~~l~~qs--~~CPiCR~~I~~ll~I 255 (437)
++..|.||..+ +-+.++.||+... +..+|.-.|...+ .+|-+|..++. +..|
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~-Fk~I 70 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK-FKDI 70 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee-eeee
Confidence 45799999853 4458999988543 5789999998654 59999999887 4433
No 108
>KOG2068|consensus
Probab=56.08 E-value=7.6 Score=40.34 Aligned_cols=46 Identities=33% Similarity=0.818 Sum_probs=35.9
Q ss_pred ccccccccccc--cCeEE--ECcCCccccHhhHHHHhccCCCCcccccccc
Q psy6091 204 GSECVICMCDI--RDTLI--LPCRHLCLCHSCADSLRYQANNCPICRAPFR 250 (437)
Q Consensus 204 ~~eC~ICl~~~--~d~vl--LPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~ 250 (437)
-..|+||.+.. .+-.+ -||+|. +|..|..........||+||.+..
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCccc
Confidence 37899998743 22333 468999 999999999988899999995544
No 109
>KOG2817|consensus
Probab=52.90 E-value=9.7 Score=40.43 Aligned_cols=44 Identities=18% Similarity=0.469 Sum_probs=31.5
Q ss_pred ccccccccccc---CeEEECcCCccccHhhHHHHhccCC---CCccccccc
Q psy6091 205 SECVICMCDIR---DTLILPCRHLCLCHSCADSLRYQAN---NCPICRAPF 249 (437)
Q Consensus 205 ~eC~ICl~~~~---d~vlLPC~H~C~C~~Ca~~l~~qs~---~CPiCR~~I 249 (437)
-.|+|=-+.-. -++-|.|||+ .|.+=+..|..... +||-|-...
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHV-ISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHV-ISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eecccchhhccCCCCCeeeeccce-ecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 34666443222 2678999999 99999999876544 899997643
No 110
>KOG0801|consensus
Probab=51.99 E-value=6.6 Score=37.35 Aligned_cols=23 Identities=43% Similarity=0.928 Sum_probs=15.8
Q ss_pred CCCCccccccccccccC---eEEECc
Q psy6091 200 CEDGGSECVICMCDIRD---TLILPC 222 (437)
Q Consensus 200 ~ed~~~eC~ICl~~~~d---~vlLPC 222 (437)
-.+...||+|||+.... +.-|||
T Consensus 173 L~ddkGECvICLEdL~~GdtIARLPC 198 (205)
T KOG0801|consen 173 LKDDKGECVICLEDLEAGDTIARLPC 198 (205)
T ss_pred hcccCCcEEEEhhhccCCCceeccce
Confidence 34567899999985543 344776
No 111
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=49.86 E-value=5 Score=41.25 Aligned_cols=45 Identities=22% Similarity=0.493 Sum_probs=35.4
Q ss_pred CccccccccccccCeEEECc------CCccccHhhHHHHhccCCCCcccccc
Q psy6091 203 GGSECVICMCDIRDTLILPC------RHLCLCHSCADSLRYQANNCPICRAP 248 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlLPC------~H~C~C~~Ca~~l~~qs~~CPiCR~~ 248 (437)
....|+||=+.+.-.++..- ||+ .|.-|.-.|....-+||.|...
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL-~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYL-SCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEE-EcCCCCCcccccCccCCCCCCC
Confidence 45699999888765444322 455 9999999999999999999985
No 112
>KOG2231|consensus
Probab=48.55 E-value=11 Score=42.76 Aligned_cols=48 Identities=29% Similarity=0.671 Sum_probs=38.2
Q ss_pred ccccccccccCeEEECcCCccccHhhHHHHhcc------CCCCccccccccceE
Q psy6091 206 ECVICMCDIRDTLILPCRHLCLCHSCADSLRYQ------ANNCPICRAPFRALL 253 (437)
Q Consensus 206 eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~q------s~~CPiCR~~I~~ll 253 (437)
.|.||-........--|+|.-.|..|+..++.. .+.||+||..|....
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s 55 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKS 55 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCcccccceeeec
Confidence 589999888888889999977999999887643 346799998766443
No 113
>KOG3579|consensus
Probab=48.31 E-value=14 Score=38.03 Aligned_cols=33 Identities=24% Similarity=0.611 Sum_probs=27.9
Q ss_pred ccccccccccccCeEEECc----CCccccHhhHHHHhc
Q psy6091 204 GSECVICMCDIRDTLILPC----RHLCLCHSCADSLRY 237 (437)
Q Consensus 204 ~~eC~ICl~~~~d~vlLPC----~H~C~C~~Ca~~l~~ 237 (437)
-.-|.+|.+...|+-++-| .|. ||+-|.+.-.+
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HK-FCFPCSResIK 304 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHK-FCFPCSRESIK 304 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccc-eecccCHHHHH
Confidence 3668899999999999988 577 99999987654
No 114
>PLN02436 cellulose synthase A
Probab=46.80 E-value=14 Score=43.93 Aligned_cols=51 Identities=25% Similarity=0.750 Sum_probs=36.7
Q ss_pred CCccccccccccccC----eEEECcCCcc---ccHhhHHHHhcc-CCCCccccccccceE
Q psy6091 202 DGGSECVICMCDIRD----TLILPCRHLC---LCHSCADSLRYQ-ANNCPICRAPFRALL 253 (437)
Q Consensus 202 d~~~eC~ICl~~~~d----~vlLPC~H~C---~C~~Ca~~l~~q-s~~CPiCR~~I~~ll 253 (437)
-+...|.||-+..-. -++.-|.. | +|..|.+--+.. ++.||.|++......
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~-C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNE-CAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeecc-CCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 356699999875422 24556643 5 999999887765 469999999988444
No 115
>KOG3053|consensus
Probab=46.38 E-value=10 Score=38.39 Aligned_cols=53 Identities=23% Similarity=0.553 Sum_probs=36.4
Q ss_pred CCCccccccccccccC----eEEECcCCcc----ccHhhHHHHhccC--------CCCccccccccceE
Q psy6091 201 EDGGSECVICMCDIRD----TLILPCRHLC----LCHSCADSLRYQA--------NNCPICRAPFRALL 253 (437)
Q Consensus 201 ed~~~eC~ICl~~~~d----~vlLPC~H~C----~C~~Ca~~l~~qs--------~~CPiCR~~I~~ll 253 (437)
.+.++-|-||+....| .-+.||+-.. ....|...|...+ -.||.|++...-.+
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~ 85 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVF 85 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeec
Confidence 3457899999976666 3467886432 5668988886433 26999999765443
No 116
>cd00240 TFIIFa Transcription initiation factor IIF, alpha subunit, N-terminal region of RAP74. Subunit of transcription initiation complex involved in initiation, elongation and promoter escape.Tetramer of 2 alpha and 2 beta TFIIF subunits interacts directly with RNA polymerase II. TFIIF inhibits non-specific transcription initiation by PolII and recruits the polymerase to the preinitiation complex on promoter DNA for site-specific transcription initiation. The PolII/TFIIF-complex attaches through direct interactions of TFIIF with promoter DNA, TFIIB and the TAF250 subunit of TFIID, and provides scaffolding for addition of TFIIE and TFIIH. Together with TFIIE, TFIIF participates in DNA strand separation (open complex formation). N-terminal domains of RAP30 and RAP74 co-fold to form a single core structure, a triple barrel heterodimer, and has pseudo-2-fold symmetry.
Probab=45.17 E-value=14 Score=34.96 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=31.3
Q ss_pred CcCCccccHhhHHHHhccCCCCc-cccccccceEEE
Q psy6091 221 PCRHLCLCHSCADSLRYQANNCP-ICRAPFRALLQI 255 (437)
Q Consensus 221 PC~H~C~C~~Ca~~l~~qs~~CP-iCR~~I~~ll~I 255 (437)
-|+|.=+|..|...|+.....|+ .|-.++..+++=
T Consensus 4 ~~r~~~~~~~~~~vMafn~~~~~d~~~~~~~~m~Re 39 (162)
T cd00240 4 SVRVPKLCLKKYRVMAFNASDKVDFAGWVVVRLERE 39 (162)
T ss_pred eeeeccccchhhhhHhccCCCCccccccceeEEEEe
Confidence 48999899999999999999999 999988877743
No 117
>KOG0825|consensus
Probab=44.84 E-value=10 Score=43.61 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=40.2
Q ss_pred CCccccccccccccC-eEEEC---cCCccccHhhHHHHhcc------CCCCccccccccceEEEE
Q psy6091 202 DGGSECVICMCDIRD-TLILP---CRHLCLCHSCADSLRYQ------ANNCPICRAPFRALLQIR 256 (437)
Q Consensus 202 d~~~eC~ICl~~~~d-~vlLP---C~H~C~C~~Ca~~l~~q------s~~CPiCR~~I~~ll~I~ 256 (437)
+....|.||++...| .-++| |.|. +|-.|+..|+.+ ...|++|..-|..+-++.
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~-~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a 160 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVEN-QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA 160 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhh-hhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc
Confidence 355677888877444 23445 9999 999999998754 347999999988877653
No 118
>KOG3970|consensus
Probab=41.25 E-value=20 Score=35.78 Aligned_cols=49 Identities=24% Similarity=0.491 Sum_probs=36.7
Q ss_pred Cccccccccc--cccCeEEECcCCccccHhhHHHHhccC--------CCCccccccccce
Q psy6091 203 GGSECVICMC--DIRDTLILPCRHLCLCHSCADSLRYQA--------NNCPICRAPFRAL 252 (437)
Q Consensus 203 ~~~eC~ICl~--~~~d~vlLPC~H~C~C~~Ca~~l~~qs--------~~CPiCR~~I~~l 252 (437)
-...|..|-. ...|++-|-|-|+ |...|...+..+. -.||-|..+|---
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhl-fHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHL-FHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhh-HHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 3456777754 5567888999999 9999999885432 2799998877543
No 119
>KOG3113|consensus
Probab=41.03 E-value=32 Score=34.96 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=38.7
Q ss_pred CCcccccccc----ccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceEEEEecc
Q psy6091 202 DGGSECVICM----CDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQIRALQ 259 (437)
Q Consensus 202 d~~~eC~ICl----~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I~~~~ 259 (437)
.....|+|=- ...+-..+++|||+ |-..=.+.+. +..|++|.+.+..--.|.++.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV-~SerAlKeik--as~C~~C~a~y~~~dvIvlNg 167 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCV-FSERALKEIK--ASVCHVCGAAYQEDDVIVLNG 167 (293)
T ss_pred cceeecccccceecceEEEEEEecccee-ccHHHHHHhh--hccccccCCcccccCeEeeCC
Confidence 3456677752 35566889999999 7666665553 689999999988755555543
No 120
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=40.93 E-value=20 Score=42.67 Aligned_cols=51 Identities=27% Similarity=0.785 Sum_probs=35.8
Q ss_pred CCccccccccccccCe----EEECcCCcc---ccHhhHHHHhcc-CCCCccccccccceE
Q psy6091 202 DGGSECVICMCDIRDT----LILPCRHLC---LCHSCADSLRYQ-ANNCPICRAPFRALL 253 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~----vlLPC~H~C---~C~~Ca~~l~~q-s~~CPiCR~~I~~ll 253 (437)
-+...|.||=+..-.+ ++.-|+. | .|+.|.+-=+.. ++.||.|++..+...
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~e-C~FPVCrpCYEYEr~eG~q~CPqCktrYkr~k 73 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDV-CAFPVCRPCYEYERKDGNQSCPQCKTKYKRHK 73 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEecc-CCCccccchhhhhhhcCCccCCccCCchhhhc
Confidence 3567999997653221 4455543 5 899999876655 569999999988444
No 121
>KOG4185|consensus
Probab=40.80 E-value=4 Score=40.61 Aligned_cols=45 Identities=33% Similarity=0.656 Sum_probs=35.2
Q ss_pred Ccccccccccccc------CeEEEC--------cCCccccHhhHHHHhccCC-CCcccccc
Q psy6091 203 GGSECVICMCDIR------DTLILP--------CRHLCLCHSCADSLRYQAN-NCPICRAP 248 (437)
Q Consensus 203 ~~~eC~ICl~~~~------d~vlLP--------C~H~C~C~~Ca~~l~~qs~-~CPiCR~~ 248 (437)
....|-||..... ...++. |+|. +|..|......+.. .||.||..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~ht-lc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHT-LCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHH-HHhcchHHHHHHhhhcCCcccce
Confidence 4578999975443 246667 9999 99999999977654 99999975
No 122
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=40.28 E-value=9.9 Score=39.23 Aligned_cols=45 Identities=18% Similarity=0.391 Sum_probs=35.3
Q ss_pred CccccccccccccCeEEEC-----cCCccccHhhHHHHhccCCCCcccccc
Q psy6091 203 GGSECVICMCDIRDTLILP-----CRHLCLCHSCADSLRYQANNCPICRAP 248 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlLP-----C~H~C~C~~Ca~~l~~qs~~CPiCR~~ 248 (437)
....|+||=+.+.-.++.. =||+ .|.-|...|....-.||.|...
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL-~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYL-HCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEE-EcCCCCCcccccCccCCCCCCC
Confidence 5689999988876544321 2455 9999999999999999999973
No 123
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=38.29 E-value=4.1 Score=33.45 Aligned_cols=43 Identities=23% Similarity=0.590 Sum_probs=25.2
Q ss_pred cccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceE
Q psy6091 205 SECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALL 253 (437)
Q Consensus 205 ~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll 253 (437)
..|+.|.....+.- +|. .|..|...... ...||-|.+++..+.
T Consensus 2 ~~CP~C~~~L~~~~----~~~-~C~~C~~~~~~-~a~CPdC~~~Le~Lk 44 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHY-HCEACQKDYKK-EAFCPDCGQPLEVLK 44 (70)
T ss_dssp -B-SSS-SBEEEET----TEE-EETTT--EEEE-EEE-TTT-SB-EEEE
T ss_pred CcCCCCCCccEEeC----CEE-ECcccccccee-cccCCCcccHHHHHH
Confidence 47999987644332 666 99999987644 369999999988554
No 124
>KOG1815|consensus
Probab=38.05 E-value=16 Score=38.92 Aligned_cols=50 Identities=22% Similarity=0.360 Sum_probs=37.3
Q ss_pred CccccccccccccC-eEEECcCCccccHhhHHHHhccC--------C--CCccccccccceE
Q psy6091 203 GGSECVICMCDIRD-TLILPCRHLCLCHSCADSLRYQA--------N--NCPICRAPFRALL 253 (437)
Q Consensus 203 ~~~eC~ICl~~~~d-~vlLPC~H~C~C~~Ca~~l~~qs--------~--~CPiCR~~I~~ll 253 (437)
....|-||++.... .+.+.|+|. ||..|........ - ..+-|++.+..-.
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~-~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~ 129 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHP-FCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDT 129 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcH-HHHHHHHHHhhheeeccccccccCCCCCccccCCCce
Confidence 45799999998885 888999999 9999998854321 1 3345888777544
No 125
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=37.44 E-value=19 Score=27.78 Aligned_cols=25 Identities=28% Similarity=0.816 Sum_probs=17.5
Q ss_pred CcCCccccHhhHHHHhccCCCCcccc
Q psy6091 221 PCRHLCLCHSCADSLRYQANNCPICR 246 (437)
Q Consensus 221 PC~H~C~C~~Ca~~l~~qs~~CPiCR 246 (437)
-|++. ||.+|..-+.....+||.|-
T Consensus 26 ~C~~~-FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNH-FCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT---B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCc-cccCcChhhhccccCCcCCC
Confidence 36777 99999998888889999994
No 126
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=33.88 E-value=9.9 Score=24.55 Aligned_cols=23 Identities=30% Similarity=0.892 Sum_probs=16.0
Q ss_pred ccHhhHHHHhccCCCCccccccc
Q psy6091 227 LCHSCADSLRYQANNCPICRAPF 249 (437)
Q Consensus 227 ~C~~Ca~~l~~qs~~CPiCR~~I 249 (437)
+|..|-..+....+.||.|.++|
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCcC
Confidence 36666666776677888887654
No 127
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=33.70 E-value=16 Score=27.65 Aligned_cols=13 Identities=31% Similarity=1.007 Sum_probs=6.7
Q ss_pred CCCCccccccccc
Q psy6091 239 ANNCPICRAPFRA 251 (437)
Q Consensus 239 s~~CPiCR~~I~~ 251 (437)
...||+|..++..
T Consensus 20 ~~~CPlC~r~l~~ 32 (54)
T PF04423_consen 20 KGCCPLCGRPLDE 32 (54)
T ss_dssp SEE-TTT--EE-H
T ss_pred CCcCCCCCCCCCH
Confidence 3499999998763
No 128
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=32.13 E-value=29 Score=29.28 Aligned_cols=50 Identities=24% Similarity=0.576 Sum_probs=20.2
Q ss_pred CCccccccccccccC-------eEEECcCCccccHhhHHHHhcc-CCCCccccccccce
Q psy6091 202 DGGSECVICMCDIRD-------TLILPCRHLCLCHSCADSLRYQ-ANNCPICRAPFRAL 252 (437)
Q Consensus 202 d~~~eC~ICl~~~~d-------~vlLPC~H~C~C~~Ca~~l~~q-s~~CPiCR~~I~~l 252 (437)
-+...|.||=+..-. +...-|+-- .|+.|.+-=++. .+.||.|+......
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fP-vCr~CyEYErkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFP-VCRPCYEYERKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS------HHHHHHHHHTS-SB-TTT--B----
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCc-cchhHHHHHhhcCcccccccCCCcccc
Confidence 356789999653322 223344444 799999876655 57999999876643
No 129
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=30.32 E-value=16 Score=24.42 Aligned_cols=22 Identities=32% Similarity=0.795 Sum_probs=13.9
Q ss_pred cHhhHHHHhccCCCCccccccc
Q psy6091 228 CHSCADSLRYQANNCPICRAPF 249 (437)
Q Consensus 228 C~~Ca~~l~~qs~~CPiCR~~I 249 (437)
|-+|...+......||.|.-.+
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred CCCCcCCchhhcCcCCCCCCCC
Confidence 5556666666666777776554
No 130
>KOG2114|consensus
Probab=30.24 E-value=24 Score=41.00 Aligned_cols=47 Identities=21% Similarity=0.615 Sum_probs=35.8
Q ss_pred cccccccccccC-eEEECcCCccccHhhHHHHhccCCCCccccccccceEEE
Q psy6091 205 SECVICMCDIRD-TLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQI 255 (437)
Q Consensus 205 ~eC~ICl~~~~d-~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I 255 (437)
..|.+|-...-- +|-.-|+|. +...|.. .....||-|+...+..+..
T Consensus 841 skCs~C~~~LdlP~VhF~CgHs-yHqhC~e---~~~~~CP~C~~e~~~~m~l 888 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHS-YHQHCLE---DKEDKCPKCLPELRGVMDL 888 (933)
T ss_pred eeecccCCccccceeeeecccH-HHHHhhc---cCcccCCccchhhhhhHHH
Confidence 489999654433 566789999 9999998 4457999999977666543
No 131
>KOG1812|consensus
Probab=30.24 E-value=16 Score=38.61 Aligned_cols=33 Identities=27% Similarity=0.669 Sum_probs=23.7
Q ss_pred CccccccccccccC----eEEECcCCccccHhhHHHHh
Q psy6091 203 GGSECVICMCDIRD----TLILPCRHLCLCHSCADSLR 236 (437)
Q Consensus 203 ~~~eC~ICl~~~~d----~vlLPC~H~C~C~~Ca~~l~ 236 (437)
...+|.||+..... -.+.-|+|. ||..|.....
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~-fC~~C~k~~i 181 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHR-FCKDCVKQHI 181 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccch-hhhHHhHHHh
Confidence 35689999932222 235679999 9999998753
No 132
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.62 E-value=48 Score=30.48 Aligned_cols=33 Identities=24% Similarity=0.657 Sum_probs=24.4
Q ss_pred cccHhhHHHHhccCCCCccccccccceEEEEecccC
Q psy6091 226 CLCHSCADSLRYQANNCPICRAPFRALLQIRALQKN 261 (437)
Q Consensus 226 C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I~~~~~~ 261 (437)
.||..|-..-. -.||+|.++|++--.+.++-.-
T Consensus 29 afcskcgeati---~qcp~csasirgd~~vegvlgl 61 (160)
T COG4306 29 AFCSKCGEATI---TQCPICSASIRGDYYVEGVLGL 61 (160)
T ss_pred HHHhhhchHHH---hcCCccCCcccccceeeeeecc
Confidence 38999987654 5799999999987666554433
No 133
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=25.93 E-value=31 Score=29.64 Aligned_cols=38 Identities=24% Similarity=0.629 Sum_probs=28.0
Q ss_pred ccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 204 GSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 204 ~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
...|.||-...... +|- +|..|+-.- ..|.||...|..
T Consensus 44 ~~~C~~CK~~v~q~-----g~~-YCq~CAYkk----GiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAK-YCQTCAYKK----GICAMCGKKILD 81 (90)
T ss_pred CccccccccccccC-----CCc-cChhhhccc----CcccccCCeecc
Confidence 46899998654432 444 799998555 899999998743
No 134
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=25.33 E-value=40 Score=33.36 Aligned_cols=25 Identities=36% Similarity=0.845 Sum_probs=21.3
Q ss_pred cccHhhHHHHhccCCCCcccccccc
Q psy6091 226 CLCHSCADSLRYQANNCPICRAPFR 250 (437)
Q Consensus 226 C~C~~Ca~~l~~qs~~CPiCR~~I~ 250 (437)
=.|..|.+.+......||+|.+.=+
T Consensus 195 K~C~sC~qqIHRNAPiCPlCK~KsR 219 (230)
T PF10146_consen 195 KTCQSCHQQIHRNAPICPLCKAKSR 219 (230)
T ss_pred chhHhHHHHHhcCCCCCcccccccc
Confidence 3799999999998999999987543
No 135
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=25.03 E-value=72 Score=23.40 Aligned_cols=23 Identities=26% Similarity=0.668 Sum_probs=13.3
Q ss_pred cCCccccHhhHHHHhccCC--CCccc
Q psy6091 222 CRHLCLCHSCADSLRYQAN--NCPIC 245 (437)
Q Consensus 222 C~H~C~C~~Ca~~l~~qs~--~CPiC 245 (437)
|+=. +...|++..+.... +||.|
T Consensus 19 C~~r-~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 19 CNVR-LHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp S--E-E-HHHHHHHTTT-SS-B-TTT
T ss_pred cCch-HHHHHHHHHHhcCCCCCCcCC
Confidence 4444 77889988865544 79987
No 136
>KOG2807|consensus
Probab=24.83 E-value=44 Score=35.10 Aligned_cols=43 Identities=21% Similarity=0.597 Sum_probs=33.0
Q ss_pred ccccccccccccC---eEEECcCCccccHhhHHHHhccCCCCccccc
Q psy6091 204 GSECVICMCDIRD---TLILPCRHLCLCHSCADSLRYQANNCPICRA 247 (437)
Q Consensus 204 ~~eC~ICl~~~~d---~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~ 247 (437)
...|-.|.++... ..---|.|. ||..|..-+..+-..||.|-.
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~-FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNV-FCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CcceeeeccccCCCCcEEchhccce-eeccchHHHHhhhhcCCCcCC
Confidence 3459999544433 344569999 999999999888899999974
No 137
>KOG0269|consensus
Probab=24.18 E-value=62 Score=37.35 Aligned_cols=43 Identities=26% Similarity=0.461 Sum_probs=36.4
Q ss_pred ccccccccccccCeEEEC--cCCccccHhhHHHHhccCCCCcc--ccc
Q psy6091 204 GSECVICMCDIRDTLILP--CRHLCLCHSCADSLRYQANNCPI--CRA 247 (437)
Q Consensus 204 ~~eC~ICl~~~~d~vlLP--C~H~C~C~~Ca~~l~~qs~~CPi--CR~ 247 (437)
...|++|-.-.+.+.+++ |+|. ...+|+..|......||. |..
T Consensus 779 ~~~CtVC~~vi~G~~~~c~~C~H~-gH~sh~~sw~~~~s~ca~~~C~~ 825 (839)
T KOG0269|consen 779 SAKCTVCDLVIRGVDVWCQVCGHG-GHDSHLKSWFFKASPCAKSICPH 825 (839)
T ss_pred hcCceeecceeeeeEeeccccccc-ccHHHHHHHHhcCCCCccccCCc
Confidence 458999988888887776 9997 999999999999998887 654
No 138
>KOG4218|consensus
Probab=23.42 E-value=53 Score=34.84 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=11.9
Q ss_pred CCCccccccccccccC
Q psy6091 201 EDGGSECVICMCDIRD 216 (437)
Q Consensus 201 ed~~~eC~ICl~~~~d 216 (437)
++.+..|++|-+....
T Consensus 12 edl~ElCPVCGDkVSG 27 (475)
T KOG4218|consen 12 EDLGELCPVCGDKVSG 27 (475)
T ss_pred cccccccccccCcccc
Confidence 3456799999877665
No 139
>PRK11595 DNA utilization protein GntX; Provisional
Probab=20.55 E-value=72 Score=30.83 Aligned_cols=39 Identities=28% Similarity=0.684 Sum_probs=23.3
Q ss_pred ccccccccccCeEEECcCCccccHhhHHHHhccCCCCcccccccc
Q psy6091 206 ECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFR 250 (437)
Q Consensus 206 eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~ 250 (437)
.|.+|-..... .+..+|..|...|......|+.|..++.
T Consensus 7 ~C~~C~~~~~~------~~~~lC~~C~~~l~~~~~~C~~Cg~~~~ 45 (227)
T PRK11595 7 LCWLCRMPLAL------SHWGICSVCSRALRTLKTCCPQCGLPAT 45 (227)
T ss_pred cCccCCCccCC------CCCcccHHHHhhCCcccCcCccCCCcCC
Confidence 58888643211 1112688888777654457888876643
No 140
>KOG2034|consensus
Probab=20.13 E-value=51 Score=38.55 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=23.3
Q ss_pred Ccccccccccccc--CeEEECcCCccccHhhHHHH
Q psy6091 203 GGSECVICMCDIR--DTLILPCRHLCLCHSCADSL 235 (437)
Q Consensus 203 ~~~eC~ICl~~~~--d~vlLPC~H~C~C~~Ca~~l 235 (437)
..+.|-+|.-... --.+.||||. |...|....
T Consensus 816 p~d~C~~C~~~ll~~pF~vf~CgH~-FH~~Cl~~~ 849 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIKPFYVFPCGHC-FHRDCLIRH 849 (911)
T ss_pred CccchHHhcchhhcCcceeeeccch-HHHHHHHHH
Confidence 4568999964332 3577899997 999998653
Done!