Query psy6091
Match_columns 437
No_of_seqs 246 out of 1345
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 17:25:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vje_B MDM4 protein; proto-onc 99.5 3.8E-14 1.3E-18 109.4 4.4 56 202-257 5-62 (63)
2 2vje_A E3 ubiquitin-protein li 99.4 1E-13 3.5E-18 107.3 4.3 54 203-256 7-62 (64)
3 2ea5_A Cell growth regulator w 99.4 3E-13 1E-17 106.2 3.6 53 201-257 12-64 (68)
4 4ic3_A E3 ubiquitin-protein li 99.2 9.4E-12 3.2E-16 98.4 3.0 50 203-256 23-72 (74)
5 2yho_A E3 ubiquitin-protein li 99.2 1.1E-11 3.8E-16 99.8 3.4 52 203-258 17-68 (79)
6 2d8t_A Dactylidin, ring finger 99.1 4.3E-11 1.5E-15 93.1 5.1 51 200-251 11-61 (71)
7 2csy_A Zinc finger protein 183 99.1 8.9E-11 3.1E-15 93.3 5.2 53 200-253 11-63 (81)
8 2ecg_A Baculoviral IAP repeat- 99.1 2.5E-11 8.7E-16 95.9 1.6 49 203-255 24-72 (75)
9 2kiz_A E3 ubiquitin-protein li 99.0 1.3E-10 4.5E-15 89.4 4.7 53 200-253 10-65 (69)
10 1chc_A Equine herpes virus-1 r 99.0 1.2E-10 4E-15 89.3 3.2 51 203-254 4-55 (68)
11 2ea6_A Ring finger protein 4; 99.0 1.3E-10 4.4E-15 88.6 3.3 50 201-251 12-68 (69)
12 2ecm_A Ring finger and CHY zin 99.0 1.9E-10 6.6E-15 84.4 3.7 48 203-251 4-55 (55)
13 2ysl_A Tripartite motif-contai 99.0 6.2E-10 2.1E-14 86.2 6.3 50 201-251 17-69 (73)
14 2ecn_A Ring finger protein 141 99.0 2.3E-10 7.9E-15 88.2 3.8 50 202-253 13-62 (70)
15 2ep4_A Ring finger protein 24; 99.0 3E-10 1E-14 88.5 4.1 53 201-254 12-67 (74)
16 4ayc_A E3 ubiquitin-protein li 99.0 2.9E-10 9.8E-15 99.5 4.4 49 204-253 53-101 (138)
17 2djb_A Polycomb group ring fin 99.0 4.4E-10 1.5E-14 87.5 5.0 50 201-251 12-62 (72)
18 2l0b_A E3 ubiquitin-protein li 99.0 3.4E-10 1.2E-14 92.5 4.5 49 202-251 38-89 (91)
19 1iym_A EL5; ring-H2 finger, ub 99.0 3.6E-10 1.2E-14 83.1 3.7 47 203-250 4-54 (55)
20 1x4j_A Ring finger protein 38; 98.9 3E-10 1E-14 89.0 3.4 49 202-251 21-72 (75)
21 2ect_A Ring finger protein 126 98.9 6.1E-10 2.1E-14 87.6 5.0 52 199-251 10-64 (78)
22 3ng2_A RNF4, snurf, ring finge 98.9 2.4E-10 8.3E-15 87.9 2.4 49 202-251 8-63 (71)
23 2ct2_A Tripartite motif protei 98.9 8E-10 2.7E-14 88.2 4.7 51 200-251 11-68 (88)
24 2xeu_A Ring finger protein 4; 98.9 4.1E-10 1.4E-14 84.6 2.4 47 204-251 3-56 (64)
25 2ecw_A Tripartite motif-contai 98.9 1.3E-09 4.4E-14 85.9 4.7 49 202-251 17-71 (85)
26 2yur_A Retinoblastoma-binding 98.9 1.3E-09 4.6E-14 85.5 4.2 48 201-249 12-62 (74)
27 2ecy_A TNF receptor-associated 98.9 1.1E-09 3.7E-14 83.8 3.3 49 202-251 13-62 (66)
28 2egp_A Tripartite motif-contai 98.9 6.9E-10 2.4E-14 87.0 2.2 49 202-251 10-65 (79)
29 2ecv_A Tripartite motif-contai 98.8 1.9E-09 6.5E-14 84.9 4.3 49 202-251 17-71 (85)
30 3t6p_A Baculoviral IAP repeat- 98.8 8E-10 2.7E-14 111.5 2.7 50 203-256 294-343 (345)
31 3ztg_A E3 ubiquitin-protein li 98.8 2E-09 6.8E-14 87.2 4.4 50 200-250 9-61 (92)
32 1t1h_A Gspef-atpub14, armadill 98.8 3E-09 1E-13 83.6 4.9 49 202-251 6-55 (78)
33 1v87_A Deltex protein 2; ring- 98.8 2.3E-09 7.7E-14 90.1 3.5 48 204-252 25-95 (114)
34 3fl2_A E3 ubiquitin-protein li 98.8 3.5E-09 1.2E-13 90.6 3.7 48 203-251 51-99 (124)
35 2ckl_A Polycomb group ring fin 98.7 4.8E-09 1.6E-13 87.7 4.2 48 203-251 14-62 (108)
36 2y43_A E3 ubiquitin-protein li 98.7 4.9E-09 1.7E-13 86.2 3.9 48 203-251 21-69 (99)
37 3lrq_A E3 ubiquitin-protein li 98.7 3.5E-09 1.2E-13 87.9 3.0 47 203-250 21-69 (100)
38 2ecl_A Ring-box protein 2; RNF 98.7 6.3E-09 2.1E-13 83.5 4.3 46 204-250 15-75 (81)
39 2y1n_A E3 ubiquitin-protein li 98.7 5.4E-09 1.9E-13 107.1 4.5 53 204-257 332-385 (389)
40 2ysj_A Tripartite motif-contai 98.7 1.5E-08 5.1E-13 76.6 5.7 44 201-245 17-63 (63)
41 1bor_A Transcription factor PM 98.7 2E-09 6.7E-14 80.7 0.6 45 202-250 4-48 (56)
42 2ecj_A Tripartite motif-contai 98.7 1.1E-08 3.6E-13 75.6 4.4 43 202-245 13-58 (58)
43 1jm7_A BRCA1, breast cancer ty 98.7 4.5E-09 1.6E-13 87.5 2.3 47 204-251 21-70 (112)
44 1g25_A CDK-activating kinase a 98.7 6.5E-09 2.2E-13 79.2 2.9 47 204-251 3-55 (65)
45 3l11_A E3 ubiquitin-protein li 98.7 4.2E-09 1.4E-13 88.9 1.3 49 202-251 13-62 (115)
46 1z6u_A NP95-like ring finger p 98.7 9.9E-09 3.4E-13 91.7 3.7 48 204-252 78-126 (150)
47 2ckl_B Ubiquitin ligase protei 98.6 1.5E-08 5.2E-13 90.6 4.1 48 203-251 53-102 (165)
48 3hct_A TNF receptor-associated 98.6 1.3E-08 4.3E-13 86.7 3.3 49 202-251 16-65 (118)
49 4ap4_A E3 ubiquitin ligase RNF 98.6 1.2E-08 4.2E-13 86.3 2.9 49 203-252 6-61 (133)
50 1e4u_A Transcriptional repress 98.6 2.5E-08 8.4E-13 80.3 3.8 49 202-251 9-62 (78)
51 1rmd_A RAG1; V(D)J recombinati 98.5 3.3E-08 1.1E-12 83.5 3.4 48 203-251 22-70 (116)
52 3dpl_R Ring-box protein 1; ubi 98.5 6.7E-08 2.3E-12 82.2 4.5 45 205-250 38-100 (106)
53 2kr4_A Ubiquitin conjugation f 98.5 9.6E-08 3.3E-12 77.5 5.1 49 202-251 12-60 (85)
54 2kre_A Ubiquitin conjugation f 98.5 1E-07 3.4E-12 80.0 5.0 49 202-251 27-75 (100)
55 4ap4_A E3 ubiquitin ligase RNF 98.5 5.1E-08 1.7E-12 82.5 2.6 48 203-251 71-125 (133)
56 1wgm_A Ubiquitin conjugation f 98.5 1.6E-07 5.4E-12 78.5 5.4 48 203-251 21-69 (98)
57 3knv_A TNF receptor-associated 98.4 6.7E-08 2.3E-12 85.6 2.2 47 202-249 29-76 (141)
58 1jm7_B BARD1, BRCA1-associated 98.4 5.2E-08 1.8E-12 82.7 1.4 45 203-250 21-66 (117)
59 2c2l_A CHIP, carboxy terminus 98.4 1.6E-07 5.5E-12 88.7 3.8 49 202-251 206-255 (281)
60 3hcs_A TNF receptor-associated 98.3 3E-07 1E-11 82.5 3.3 49 202-251 16-65 (170)
61 2d8s_A Cellular modulator of i 98.3 3.8E-07 1.3E-11 73.8 3.4 49 202-251 13-70 (80)
62 4a0k_B E3 ubiquitin-protein li 98.2 1.5E-07 5E-12 81.7 0.5 45 205-250 49-111 (117)
63 2yu4_A E3 SUMO-protein ligase 98.1 2.1E-06 7.1E-11 70.6 4.1 52 203-255 6-69 (94)
64 2f42_A STIP1 homology and U-bo 98.1 1.9E-06 6.4E-11 79.8 3.6 49 202-251 104-153 (179)
65 3vk6_A E3 ubiquitin-protein li 97.6 4.5E-05 1.5E-09 64.7 4.8 50 206-256 3-54 (101)
66 2bay_A PRE-mRNA splicing facto 97.6 2.4E-05 8.4E-10 60.0 2.7 47 204-251 3-50 (61)
67 1vyx_A ORF K3, K3RING; zinc-bi 97.6 2.8E-05 9.5E-10 59.6 2.6 49 202-250 4-58 (60)
68 1wim_A KIAA0161 protein; ring 97.6 1.9E-05 6.6E-10 64.3 1.7 44 204-248 5-61 (94)
69 3htk_C E3 SUMO-protein ligase 97.5 4.6E-05 1.6E-09 74.6 3.9 47 203-250 180-231 (267)
70 2ct0_A Non-SMC element 1 homol 97.2 0.00029 1E-08 56.4 4.4 50 201-251 12-64 (74)
71 3k1l_B Fancl; UBC, ring, RWD, 96.7 0.00035 1.2E-08 71.0 0.6 51 200-251 304-373 (381)
72 2ko5_A Ring finger protein Z; 94.2 0.025 8.7E-07 47.5 2.9 49 204-254 28-76 (99)
73 3nw0_A Non-structural maintena 90.5 0.21 7.3E-06 47.6 4.5 48 203-251 179-229 (238)
74 2jun_A Midline-1; B-BOX, TRIM, 84.3 0.33 1.1E-05 39.3 1.4 31 204-235 3-36 (101)
75 2a20_A Regulating synaptic mem 50.1 1.2 4E-05 34.5 -2.5 43 201-247 6-59 (62)
76 3i2d_A E3 SUMO-protein ligase 48.6 11 0.00036 38.5 3.4 47 203-250 248-299 (371)
77 4fo9_A E3 SUMO-protein ligase 44.1 13 0.00045 37.7 3.2 46 204-250 215-265 (360)
78 1z60_A TFIIH basal transcripti 40.6 12 0.00041 28.5 1.8 40 205-245 16-58 (59)
79 2fiy_A Protein FDHE homolog; F 39.7 5.3 0.00018 39.5 -0.4 47 202-248 180-231 (309)
80 1weo_A Cellulose synthase, cat 38.0 23 0.0008 29.4 3.2 50 203-252 15-71 (93)
81 3m62_A Ubiquitin conjugation f 36.3 28 0.00097 39.5 4.6 50 202-251 889-938 (968)
82 2d8v_A Zinc finger FYVE domain 30.4 26 0.00088 27.5 2.1 34 201-236 5-39 (67)
83 2cs3_A Protein C14ORF4, MY039 27.1 28 0.00097 28.5 1.9 34 202-236 13-50 (93)
84 2jrp_A Putative cytoplasmic pr 24.7 9 0.00031 31.1 -1.4 43 205-253 3-45 (81)
85 2jne_A Hypothetical protein YF 23.7 8.7 0.0003 32.4 -1.7 45 203-253 31-75 (101)
86 2zet_C Melanophilin; complex, 20.7 11 0.00038 33.6 -1.8 45 203-248 67-117 (153)
No 1
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.45 E-value=3.8e-14 Score=109.41 Aligned_cols=56 Identities=27% Similarity=0.605 Sum_probs=50.9
Q ss_pred CCccccccccccccCeEEE--CcCCccccHhhHHHHhccCCCCccccccccceEEEEe
Q psy6091 202 DGGSECVICMCDIRDTLIL--PCRHLCLCHSCADSLRYQANNCPICRAPFRALLQIRA 257 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlL--PC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I~~ 257 (437)
....+|+|||+..++++++ ||||+|+|..|+..|..+...||+||++|..+++|..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 62 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI 62 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEec
Confidence 3467999999999999888 9999999999999998888899999999999998753
No 2
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.41 E-value=1e-13 Score=107.31 Aligned_cols=54 Identities=30% Similarity=0.712 Sum_probs=50.1
Q ss_pred CccccccccccccCeEEE--CcCCccccHhhHHHHhccCCCCccccccccceEEEE
Q psy6091 203 GGSECVICMCDIRDTLIL--PCRHLCLCHSCADSLRYQANNCPICRAPFRALLQIR 256 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlL--PC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I~ 256 (437)
++.+|+|||+..++++++ ||||+++|..|+..|..+...||+||++|..+++|.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 62 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeee
Confidence 456899999999999998 999999999999999988889999999999998875
No 3
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3e-13 Score=106.23 Aligned_cols=53 Identities=32% Similarity=0.940 Sum_probs=47.5
Q ss_pred CCCccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceEEEEe
Q psy6091 201 EDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQIRA 257 (437)
Q Consensus 201 ed~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I~~ 257 (437)
.++..+|+|||+..++++++||||+|+|..|+..+ ..||+||+.|...++|..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----QQCPMCRQFVQESFALSG 64 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----SSCTTTCCCCCCEECCCS
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----CCCCCCCcchhceEEeec
Confidence 34578999999999999999999999999999965 899999999999887653
No 4
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.16 E-value=9.4e-12 Score=98.44 Aligned_cols=50 Identities=30% Similarity=0.734 Sum_probs=46.0
Q ss_pred CccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceEEEE
Q psy6091 203 GGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQIR 256 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I~ 256 (437)
....|+||++...+++++||||.+||..|+..| ..||+||++|...++|.
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKIL 72 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEEEECB
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCcEEEe
Confidence 357899999999999999999999999999988 89999999999988764
No 5
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.16 E-value=1.1e-11 Score=99.81 Aligned_cols=52 Identities=27% Similarity=0.712 Sum_probs=47.0
Q ss_pred CccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceEEEEec
Q psy6091 203 GGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQIRAL 258 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I~~~ 258 (437)
+...|+||++..++++++||||++||..|+..| ..||+||++|...++|...
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEEECBCT
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCeEEEEeC
Confidence 356899999999999999999999999999988 5999999999998877643
No 6
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=4.3e-11 Score=93.11 Aligned_cols=51 Identities=25% Similarity=0.692 Sum_probs=46.1
Q ss_pred CCCCccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 200 CEDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 200 ~ed~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
.......|.||++...+.+++||+|. ||..|+..|......||+||+.|..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34456799999999999999999999 9999999999888999999999874
No 7
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=8.9e-11 Score=93.35 Aligned_cols=53 Identities=28% Similarity=0.627 Sum_probs=47.1
Q ss_pred CCCCccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceE
Q psy6091 200 CEDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALL 253 (437)
Q Consensus 200 ~ed~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll 253 (437)
..+....|.||++...+++++||+|. ||..|+..|......||+||+.+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGIF 63 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSCC
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccccC
Confidence 34456799999999999999999999 999999999988889999999997443
No 8
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=2.5e-11 Score=95.94 Aligned_cols=49 Identities=31% Similarity=0.764 Sum_probs=44.0
Q ss_pred CccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceEEE
Q psy6091 203 GGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQI 255 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I 255 (437)
...+|+||++...+++++||||.+||..|+..+ ..||+||++|...++|
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i 72 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKI 72 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCCCBC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecCcEEE
Confidence 356899999999999999999999999999765 8999999999987655
No 9
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.04 E-value=1.3e-10 Score=89.39 Aligned_cols=53 Identities=38% Similarity=0.790 Sum_probs=45.2
Q ss_pred CCCCccccccccccc---cCeEEECcCCccccHhhHHHHhccCCCCccccccccceE
Q psy6091 200 CEDGGSECVICMCDI---RDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALL 253 (437)
Q Consensus 200 ~ed~~~eC~ICl~~~---~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll 253 (437)
..+....|.||++.. ..++++||+|. ||..|...|......||+||+.|...+
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 345678999998765 45788999999 999999999988899999999998654
No 10
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.01 E-value=1.2e-10 Score=89.27 Aligned_cols=51 Identities=29% Similarity=0.811 Sum_probs=45.8
Q ss_pred CccccccccccccC-eEEECcCCccccHhhHHHHhccCCCCccccccccceEE
Q psy6091 203 GGSECVICMCDIRD-TLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQ 254 (437)
Q Consensus 203 ~~~eC~ICl~~~~d-~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~ 254 (437)
....|.||++...+ ++++||+|. ||..|...|......||+||+.+..++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 55 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVH 55 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEEC
T ss_pred CCCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhh
Confidence 45689999999988 589999999 9999999999888999999999987653
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.3e-10 Score=88.62 Aligned_cols=50 Identities=30% Similarity=0.720 Sum_probs=43.7
Q ss_pred CCCccccccccccccCe-------EEECcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 201 EDGGSECVICMCDIRDT-------LILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 201 ed~~~eC~ICl~~~~d~-------vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
......|.||++...+. +++||+|. ||..|...|......||+||+.|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34567999999987765 89999998 9999999999888999999998863
No 12
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.99 E-value=1.9e-10 Score=84.38 Aligned_cols=48 Identities=38% Similarity=0.916 Sum_probs=42.5
Q ss_pred CccccccccccccC----eEEECcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 203 GGSECVICMCDIRD----TLILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 203 ~~~eC~ICl~~~~d----~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
....|.||++...+ ++++||+|. ||..|...|......||+||+.|.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 35689999998755 899999998 9999999999888999999998863
No 13
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=6.2e-10 Score=86.16 Aligned_cols=50 Identities=22% Similarity=0.621 Sum_probs=43.6
Q ss_pred CCCccccccccccccCeEEECcCCccccHhhHHHHhc---cCCCCccccccccc
Q psy6091 201 EDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRY---QANNCPICRAPFRA 251 (437)
Q Consensus 201 ed~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~---qs~~CPiCR~~I~~ 251 (437)
......|.||++...+.+++||+|. ||..|...|.. ....||+||+.|..
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3456799999999999999999999 99999999986 34589999998863
No 14
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2.3e-10 Score=88.23 Aligned_cols=50 Identities=42% Similarity=0.895 Sum_probs=44.8
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceE
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALL 253 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll 253 (437)
.....|.||++...+ +++||+|. ||..|...|......||+||+.|....
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 346799999999999 89999999 999999999988899999999988543
No 15
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=3e-10 Score=88.50 Aligned_cols=53 Identities=26% Similarity=0.593 Sum_probs=44.6
Q ss_pred CCCcccccccccccc---CeEEECcCCccccHhhHHHHhccCCCCccccccccceEE
Q psy6091 201 EDGGSECVICMCDIR---DTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQ 254 (437)
Q Consensus 201 ed~~~eC~ICl~~~~---d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~ 254 (437)
.+....|.||++... .++++||+|. ||..|...|......||+||++|..+.+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 345679999998754 3667899999 9999999999888999999999987653
No 16
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.97 E-value=2.9e-10 Score=99.53 Aligned_cols=49 Identities=27% Similarity=0.691 Sum_probs=44.9
Q ss_pred ccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceE
Q psy6091 204 GSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALL 253 (437)
Q Consensus 204 ~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll 253 (437)
...|+||++...+++++||||. ||..|+..|......||+||++|....
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 4579999999999999999998 999999999998899999999997653
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=4.4e-10 Score=87.55 Aligned_cols=50 Identities=28% Similarity=0.559 Sum_probs=45.0
Q ss_pred CCCccccccccccccCeEEE-CcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 201 EDGGSECVICMCDIRDTLIL-PCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 201 ed~~~eC~ICl~~~~d~vlL-PC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
.+....|.||++...+.+++ ||+|. ||..|...|......||+||+.|..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCc
Confidence 34578999999999998887 99999 9999999999888999999999874
No 18
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.97 E-value=3.4e-10 Score=92.52 Aligned_cols=49 Identities=27% Similarity=0.673 Sum_probs=43.5
Q ss_pred CCccccccccccccC---eEEECcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 202 DGGSECVICMCDIRD---TLILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 202 d~~~eC~ICl~~~~d---~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
+....|.||++.... ++.+||+|. ||..|...|......||+||+.|..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 356789999988776 888999998 9999999999988999999998864
No 19
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.95 E-value=3.6e-10 Score=83.11 Aligned_cols=47 Identities=32% Similarity=0.826 Sum_probs=41.8
Q ss_pred CccccccccccccC---eEEEC-cCCccccHhhHHHHhccCCCCcccccccc
Q psy6091 203 GGSECVICMCDIRD---TLILP-CRHLCLCHSCADSLRYQANNCPICRAPFR 250 (437)
Q Consensus 203 ~~~eC~ICl~~~~d---~vlLP-C~H~C~C~~Ca~~l~~qs~~CPiCR~~I~ 250 (437)
+..+|.||++...+ ++.+| |+|. ||..|...|......||+||++|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45689999998777 78888 9999 999999999998899999999874
No 20
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=3e-10 Score=89.00 Aligned_cols=49 Identities=37% Similarity=0.848 Sum_probs=42.2
Q ss_pred CCccccccccccccC---eEEECcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 202 DGGSECVICMCDIRD---TLILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 202 d~~~eC~ICl~~~~d---~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
.....|.||++...+ ++++||+|. ||..|...|......||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 356789999976554 488999999 9999999999888999999998864
No 21
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.94 E-value=6.1e-10 Score=87.58 Aligned_cols=52 Identities=33% Similarity=0.723 Sum_probs=43.7
Q ss_pred CCCCCcccccccccccc---CeEEECcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 199 DCEDGGSECVICMCDIR---DTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 199 d~ed~~~eC~ICl~~~~---d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
+......+|.||++... .++++||+|. ||..|...|......||+||+.|..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCC
Confidence 34456789999987654 4577899999 9999999999888999999999875
No 22
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.94 E-value=2.4e-10 Score=87.87 Aligned_cols=49 Identities=31% Similarity=0.738 Sum_probs=43.3
Q ss_pred CCccccccccccccCe-------EEECcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 202 DGGSECVICMCDIRDT-------LILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~-------vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
+....|.||++...+. +++||+|. ||..|...|......||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence 3467899999987765 89999999 9999999999888999999998873
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=8e-10 Score=88.16 Aligned_cols=51 Identities=29% Similarity=0.664 Sum_probs=44.1
Q ss_pred CCCCccccccccccccC----eEEECcCCccccHhhHHHHhccC---CCCccccccccc
Q psy6091 200 CEDGGSECVICMCDIRD----TLILPCRHLCLCHSCADSLRYQA---NNCPICRAPFRA 251 (437)
Q Consensus 200 ~ed~~~eC~ICl~~~~d----~vlLPC~H~C~C~~Ca~~l~~qs---~~CPiCR~~I~~ 251 (437)
......+|.||++...+ ++++||||. ||..|...|.... ..||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 33456799999999888 999999999 9999999998765 799999998753
No 24
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.90 E-value=4.1e-10 Score=84.57 Aligned_cols=47 Identities=30% Similarity=0.702 Sum_probs=42.2
Q ss_pred ccccccccccccCe-------EEECcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 204 GSECVICMCDIRDT-------LILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 204 ~~eC~ICl~~~~d~-------vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
..+|.||++...+. +++||||. ||..|...|......||+||+++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCc
Confidence 46899999877664 89999999 9999999999888999999999874
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.88 E-value=1.3e-09 Score=85.89 Aligned_cols=49 Identities=27% Similarity=0.743 Sum_probs=44.0
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhcc------CCCCccccccccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQ------ANNCPICRAPFRA 251 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~q------s~~CPiCR~~I~~ 251 (437)
.....|.||++...+.+++||+|. ||..|...|... ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 456799999999999999999999 999999999876 6699999999874
No 26
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.86 E-value=1.3e-09 Score=85.49 Aligned_cols=48 Identities=23% Similarity=0.653 Sum_probs=42.7
Q ss_pred CCCccccccccccccCeEEEC-cCCccccHhhHHHHhccC--CCCccccccc
Q psy6091 201 EDGGSECVICMCDIRDTLILP-CRHLCLCHSCADSLRYQA--NNCPICRAPF 249 (437)
Q Consensus 201 ed~~~eC~ICl~~~~d~vlLP-C~H~C~C~~Ca~~l~~qs--~~CPiCR~~I 249 (437)
......|.||++...+.+++| |+|. ||..|...|.... ..||+||+.+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 345689999999999999999 9999 9999999998765 6999999964
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.1e-09 Score=83.81 Aligned_cols=49 Identities=20% Similarity=0.515 Sum_probs=43.1
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhc-cCCCCccccccccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRY-QANNCPICRAPFRA 251 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~-qs~~CPiCR~~I~~ 251 (437)
.....|.||++...+++++||||. ||..|...|.. ....||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 346789999999999999999999 99999999984 45699999998863
No 28
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.85 E-value=6.9e-10 Score=87.00 Aligned_cols=49 Identities=27% Similarity=0.718 Sum_probs=43.5
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhcc-------CCCCccccccccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQ-------ANNCPICRAPFRA 251 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~q-------s~~CPiCR~~I~~ 251 (437)
.....|.||++...+++++||||. ||..|...|... ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 356789999999999999999999 999999999876 5699999999864
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.9e-09 Score=84.91 Aligned_cols=49 Identities=27% Similarity=0.770 Sum_probs=44.0
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhcc------CCCCccccccccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQ------ANNCPICRAPFRA 251 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~q------s~~CPiCR~~I~~ 251 (437)
.....|.||++...+++++||+|. ||..|...|... ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 456799999999999999999999 999999999776 6799999999874
No 30
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.84 E-value=8e-10 Score=111.49 Aligned_cols=50 Identities=34% Similarity=0.856 Sum_probs=45.9
Q ss_pred CccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceEEEE
Q psy6091 203 GGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQIR 256 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~I~ 256 (437)
....|+||++...+++++||||.|||..|+..| ..||+||.+|...++|.
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTVRTF 343 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEEEECC
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCeEEee
Confidence 357899999999999999999999999999988 89999999999988764
No 31
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.83 E-value=2e-09 Score=87.16 Aligned_cols=50 Identities=22% Similarity=0.593 Sum_probs=43.2
Q ss_pred CCCCccccccccccccCeEEEC-cCCccccHhhHHHHhccC--CCCcccccccc
Q psy6091 200 CEDGGSECVICMCDIRDTLILP-CRHLCLCHSCADSLRYQA--NNCPICRAPFR 250 (437)
Q Consensus 200 ~ed~~~eC~ICl~~~~d~vlLP-C~H~C~C~~Ca~~l~~qs--~~CPiCR~~I~ 250 (437)
.......|.||++...+++++| |||. ||..|...|.... ..||+||..+.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3345689999999999999999 9999 9999999997644 59999999873
No 32
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.82 E-value=3e-09 Score=83.58 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=44.3
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhcc-CCCCccccccccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQ-ANNCPICRAPFRA 251 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~q-s~~CPiCR~~I~~ 251 (437)
.....|.||++...+++++||||. ||..|...|... ...||+||+++..
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 346799999999999999999999 999999999986 6799999999864
No 33
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.79 E-value=2.3e-09 Score=90.10 Aligned_cols=48 Identities=21% Similarity=0.546 Sum_probs=39.8
Q ss_pred ccccccccccccC------------------eEEECcCCccccHhhHHHHh-----ccCCCCccccccccce
Q psy6091 204 GSECVICMCDIRD------------------TLILPCRHLCLCHSCADSLR-----YQANNCPICRAPFRAL 252 (437)
Q Consensus 204 ~~eC~ICl~~~~d------------------~vlLPC~H~C~C~~Ca~~l~-----~qs~~CPiCR~~I~~l 252 (437)
+..|.|||+...+ +.++||+|. ||..|+..|. .....||+||+.+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3589999987643 348999999 9999999998 4467999999988754
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.76 E-value=3.5e-09 Score=90.60 Aligned_cols=48 Identities=23% Similarity=0.558 Sum_probs=42.5
Q ss_pred CccccccccccccCeEEECcCCccccHhhHHHHhccC-CCCccccccccc
Q psy6091 203 GGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQA-NNCPICRAPFRA 251 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs-~~CPiCR~~I~~ 251 (437)
....|+||++...+++++||||. ||..|...|.... ..||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 34689999999999999999999 9999999998644 499999999875
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.75 E-value=4.8e-09 Score=87.72 Aligned_cols=48 Identities=25% Similarity=0.588 Sum_probs=44.4
Q ss_pred CccccccccccccCeEEE-CcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 203 GGSECVICMCDIRDTLIL-PCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlL-PC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
....|.||++...+.+.+ ||||. ||..|...|......||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 457899999999999998 99999 9999999999888999999999875
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.74 E-value=4.9e-09 Score=86.22 Aligned_cols=48 Identities=23% Similarity=0.555 Sum_probs=44.0
Q ss_pred CccccccccccccCeEEE-CcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 203 GGSECVICMCDIRDTLIL-PCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlL-PC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
....|.||++...+.+++ ||||. ||..|...|......||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 357899999999999888 99999 9999999999888899999999875
No 37
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.74 E-value=3.5e-09 Score=87.93 Aligned_cols=47 Identities=36% Similarity=0.810 Sum_probs=43.1
Q ss_pred CccccccccccccCeEE-ECcCCccccHhhHHHHhccC-CCCcccccccc
Q psy6091 203 GGSECVICMCDIRDTLI-LPCRHLCLCHSCADSLRYQA-NNCPICRAPFR 250 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vl-LPC~H~C~C~~Ca~~l~~qs-~~CPiCR~~I~ 250 (437)
....|.||++...++++ ++|||. ||..|...|.... ..||+||.++.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 45789999999999999 999999 9999999998877 69999999985
No 38
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=6.3e-09 Score=83.48 Aligned_cols=46 Identities=26% Similarity=0.715 Sum_probs=38.3
Q ss_pred ccccccccccccC--------------eEEE-CcCCccccHhhHHHHhccCCCCcccccccc
Q psy6091 204 GSECVICMCDIRD--------------TLIL-PCRHLCLCHSCADSLRYQANNCPICRAPFR 250 (437)
Q Consensus 204 ~~eC~ICl~~~~d--------------~vlL-PC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~ 250 (437)
+..|.||++...+ ++++ +|+|. ||..|...|..+.+.||+||+++.
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcc
Confidence 4578888876654 4455 59999 999999999999999999999876
No 39
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.72 E-value=5.4e-09 Score=107.05 Aligned_cols=53 Identities=34% Similarity=0.725 Sum_probs=47.1
Q ss_pred ccccccccccccCeEEECcCCccccHhhHHHHhc-cCCCCccccccccceEEEEe
Q psy6091 204 GSECVICMCDIRDTLILPCRHLCLCHSCADSLRY-QANNCPICRAPFRALLQIRA 257 (437)
Q Consensus 204 ~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~-qs~~CPiCR~~I~~ll~I~~ 257 (437)
..+|+||++...+++++||||. ||..|...|.. ....||+||++|.....|.+
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 4699999999999999999999 79999999987 57899999999998765544
No 40
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=1.5e-08 Score=76.59 Aligned_cols=44 Identities=23% Similarity=0.644 Sum_probs=38.9
Q ss_pred CCCccccccccccccCeEEECcCCccccHhhHHHHhc---cCCCCccc
Q psy6091 201 EDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRY---QANNCPIC 245 (437)
Q Consensus 201 ed~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~---qs~~CPiC 245 (437)
......|.||++...+++++||||. ||..|...|.. ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 3456799999999999999999999 99999999987 34589998
No 41
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=2e-09 Score=80.70 Aligned_cols=45 Identities=33% Similarity=0.831 Sum_probs=39.7
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhccCCCCcccccccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFR 250 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~ 250 (437)
.+...|.||++...+++++||+|. ||..|... +...||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~---~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEA---SGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSS---SSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCc-ccHHHHcc---CCCCCCcCCcEee
Confidence 456789999999999999999999 99999876 3579999999876
No 42
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=1.1e-08 Score=75.64 Aligned_cols=43 Identities=23% Similarity=0.788 Sum_probs=38.0
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhc---cCCCCccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRY---QANNCPIC 245 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~---qs~~CPiC 245 (437)
.....|.||++...+.+++||+|. ||..|...|.. ....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 456799999999999999999999 99999999943 45799998
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.69 E-value=4.5e-09 Score=87.49 Aligned_cols=47 Identities=30% Similarity=0.734 Sum_probs=42.0
Q ss_pred ccccccccccccCeEEECcCCccccHhhHHHHhccCC---CCccccccccc
Q psy6091 204 GSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQAN---NCPICRAPFRA 251 (437)
Q Consensus 204 ~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~---~CPiCR~~I~~ 251 (437)
...|.||++...+++++||||. ||..|...|..... .||+||..+..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4689999999999999999999 99999999987654 89999998874
No 44
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.69 E-value=6.5e-09 Score=79.23 Aligned_cols=47 Identities=38% Similarity=0.858 Sum_probs=38.4
Q ss_pred ccccccccc-cccCe----EEECcCCccccHhhHHHHhcc-CCCCccccccccc
Q psy6091 204 GSECVICMC-DIRDT----LILPCRHLCLCHSCADSLRYQ-ANNCPICRAPFRA 251 (437)
Q Consensus 204 ~~eC~ICl~-~~~d~----vlLPC~H~C~C~~Ca~~l~~q-s~~CPiCR~~I~~ 251 (437)
+..|.||++ ...+. +++||||. ||..|...|... ...||+||.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 468999999 44444 67899999 999999999544 4689999999864
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.66 E-value=4.2e-09 Score=88.87 Aligned_cols=49 Identities=33% Similarity=0.734 Sum_probs=43.7
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhcc-CCCCccccccccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQ-ANNCPICRAPFRA 251 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~q-s~~CPiCR~~I~~ 251 (437)
.....|.||++...+++++||||. ||..|...|... ...||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 346789999999999999999999 999999999866 5699999999875
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.66 E-value=9.9e-09 Score=91.69 Aligned_cols=48 Identities=23% Similarity=0.508 Sum_probs=43.2
Q ss_pred ccccccccccccCeEEECcCCccccHhhHHHHhccCC-CCccccccccce
Q psy6091 204 GSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQAN-NCPICRAPFRAL 252 (437)
Q Consensus 204 ~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~-~CPiCR~~I~~l 252 (437)
...|.||++...+++++||+|. ||..|...|..... .||+||..+..-
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4689999999999999999999 99999999987654 899999998753
No 47
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.63 E-value=1.5e-08 Score=90.65 Aligned_cols=48 Identities=25% Similarity=0.652 Sum_probs=42.9
Q ss_pred CccccccccccccCeEEE-CcCCccccHhhHHHHhcc-CCCCccccccccc
Q psy6091 203 GGSECVICMCDIRDTLIL-PCRHLCLCHSCADSLRYQ-ANNCPICRAPFRA 251 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlL-PC~H~C~C~~Ca~~l~~q-s~~CPiCR~~I~~ 251 (437)
....|+||++...+++.+ ||||. ||..|...|... ...||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 456899999999999888 99999 999999999876 6789999999854
No 48
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.63 E-value=1.3e-08 Score=86.71 Aligned_cols=49 Identities=27% Similarity=0.672 Sum_probs=44.1
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhccCC-CCccccccccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQAN-NCPICRAPFRA 251 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~-~CPiCR~~I~~ 251 (437)
.....|+||++...+.+++||||. ||..|...|..... .||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 346799999999999999999999 99999999987665 99999999875
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.62 E-value=1.2e-08 Score=86.28 Aligned_cols=49 Identities=31% Similarity=0.720 Sum_probs=43.9
Q ss_pred CccccccccccccCe-------EEECcCCccccHhhHHHHhccCCCCccccccccce
Q psy6091 203 GGSECVICMCDIRDT-------LILPCRHLCLCHSCADSLRYQANNCPICRAPFRAL 252 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~-------vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~l 252 (437)
+...|.||++...+. ++++|||. ||..|...|......||+||+.+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 356899999988776 99999999 99999999998889999999999753
No 50
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.59 E-value=2.5e-08 Score=80.32 Aligned_cols=49 Identities=31% Similarity=0.809 Sum_probs=40.0
Q ss_pred CCccccccccccc--cCeEEEC--cCCccccHhhHHHHhcc-CCCCccccccccc
Q psy6091 202 DGGSECVICMCDI--RDTLILP--CRHLCLCHSCADSLRYQ-ANNCPICRAPFRA 251 (437)
Q Consensus 202 d~~~eC~ICl~~~--~d~vlLP--C~H~C~C~~Ca~~l~~q-s~~CPiCR~~I~~ 251 (437)
.+...|+||++.. .+.+++| |||. ||..|...++.. ...||+||+++..
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred ccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3467899999976 4566776 9999 999999998643 4689999999885
No 51
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.54 E-value=3.3e-08 Score=83.49 Aligned_cols=48 Identities=29% Similarity=0.641 Sum_probs=43.5
Q ss_pred CccccccccccccCeEEECcCCccccHhhHHHHhcc-CCCCccccccccc
Q psy6091 203 GGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQ-ANNCPICRAPFRA 251 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~q-s~~CPiCR~~I~~ 251 (437)
....|.||++...+++++||||. ||..|...|... ...||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 35789999999999999999999 999999999876 6799999999874
No 52
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.51 E-value=6.7e-08 Score=82.17 Aligned_cols=45 Identities=22% Similarity=0.490 Sum_probs=38.0
Q ss_pred cccccccccccC------------------eEEECcCCccccHhhHHHHhccCCCCcccccccc
Q psy6091 205 SECVICMCDIRD------------------TLILPCRHLCLCHSCADSLRYQANNCPICRAPFR 250 (437)
Q Consensus 205 ~eC~ICl~~~~d------------------~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~ 250 (437)
..|.||++...+ ++++||+|. ||..|...|......||+||+.+.
T Consensus 38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCccCChhHhCcCchhhccccccCCccceEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcce
Confidence 468888765543 477899999 999999999999999999999864
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.50 E-value=9.6e-08 Score=77.50 Aligned_cols=49 Identities=12% Similarity=0.039 Sum_probs=44.8
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
.....|+||++-..+++++||||. ||..|...|+.....||+||.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 356899999999999999999999 9999999998878899999998764
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.49 E-value=1e-07 Score=79.98 Aligned_cols=49 Identities=12% Similarity=0.063 Sum_probs=44.9
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
.....|+||++-..++|++||||. ||..|...|+.....||+||.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 356899999999999999999999 9999999999878899999998864
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.46 E-value=5.1e-08 Score=82.46 Aligned_cols=48 Identities=31% Similarity=0.750 Sum_probs=42.8
Q ss_pred CccccccccccccCe-------EEECcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 203 GGSECVICMCDIRDT-------LILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~-------vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
+...|.||++...+. ++++|+|. ||..|...|....+.||+||..+..
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 456899999877664 89999999 9999999999999999999999874
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.45 E-value=1.6e-07 Score=78.49 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=44.4
Q ss_pred CccccccccccccCeEEECcC-CccccHhhHHHHhccCCCCccccccccc
Q psy6091 203 GGSECVICMCDIRDTLILPCR-HLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlLPC~-H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
....|+||++-..|+|++||| |. ||..|+..|+.....||+||.++..
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 467899999999999999999 99 9999999999877899999998864
No 57
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.41 E-value=6.7e-08 Score=85.57 Aligned_cols=47 Identities=23% Similarity=0.494 Sum_probs=42.4
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhccCC-CCccccccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQAN-NCPICRAPF 249 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~-~CPiCR~~I 249 (437)
+....|.||++...+++.++|||. ||..|...|..... .||+||.++
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 356799999999999999999999 99999999987665 999999976
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.41 E-value=5.2e-08 Score=82.72 Aligned_cols=45 Identities=27% Similarity=0.713 Sum_probs=40.9
Q ss_pred CccccccccccccCeEEE-CcCCccccHhhHHHHhccCCCCcccccccc
Q psy6091 203 GGSECVICMCDIRDTLIL-PCRHLCLCHSCADSLRYQANNCPICRAPFR 250 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlL-PC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~ 250 (437)
....|.||++...+++++ ||||. ||..|...|.. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhc--CCCcCCCCcCc
Confidence 357899999999999999 99999 99999999976 78999999974
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.37 E-value=1.6e-07 Score=88.65 Aligned_cols=49 Identities=14% Similarity=0.088 Sum_probs=43.3
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhccCC-CCccccccccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQAN-NCPICRAPFRA 251 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~-~CPiCR~~I~~ 251 (437)
.....|+||++-..++|++||||. ||..|...|..... .||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 356789999999999999999999 99999999987644 49999999873
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.28 E-value=3e-07 Score=82.51 Aligned_cols=49 Identities=27% Similarity=0.677 Sum_probs=43.7
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhccC-CCCccccccccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQA-NNCPICRAPFRA 251 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs-~~CPiCR~~I~~ 251 (437)
+....|+||++...+++.+||||. ||..|...|.... ..||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 346799999999999999999999 9999999998654 499999999876
No 61
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=3.8e-07 Score=73.81 Aligned_cols=49 Identities=27% Similarity=0.724 Sum_probs=40.4
Q ss_pred CCccccccccccc--cCeEEECcC-----CccccHhhHHHHhccCC--CCccccccccc
Q psy6091 202 DGGSECVICMCDI--RDTLILPCR-----HLCLCHSCADSLRYQAN--NCPICRAPFRA 251 (437)
Q Consensus 202 d~~~eC~ICl~~~--~d~vlLPC~-----H~C~C~~Ca~~l~~qs~--~CPiCR~~I~~ 251 (437)
.....|.||++.. .+.+++||+ |. |+..|.+.|...++ .||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3467999999754 356789997 99 99999999987754 99999998863
No 62
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.25 E-value=1.5e-07 Score=81.70 Aligned_cols=45 Identities=22% Similarity=0.490 Sum_probs=0.0
Q ss_pred cccccccccccC------------------eEEECcCCccccHhhHHHHhccCCCCcccccccc
Q psy6091 205 SECVICMCDIRD------------------TLILPCRHLCLCHSCADSLRYQANNCPICRAPFR 250 (437)
Q Consensus 205 ~eC~ICl~~~~d------------------~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~ 250 (437)
..|.||++...+ ++++||+|. ||..|...|....+.||+||+++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCeee
Confidence 479999877654 234699999 999999999998899999999864
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.08 E-value=2.1e-06 Score=70.62 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=42.7
Q ss_pred CccccccccccccCeEEEC-cCCccccHhhHHHHhccC------CCCcc--cccc---ccceEEE
Q psy6091 203 GGSECVICMCDIRDTLILP-CRHLCLCHSCADSLRYQA------NNCPI--CRAP---FRALLQI 255 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlLP-C~H~C~C~~Ca~~l~~qs------~~CPi--CR~~---I~~ll~I 255 (437)
....|+||++...++|++| |||. ||..|+..|+... ..||+ |+.. ...++..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn 69 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQD 69 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEEC
T ss_pred cEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCC
Confidence 4578999999999999997 9999 9999999998653 49999 9955 4445433
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.05 E-value=1.9e-06 Score=79.80 Aligned_cols=49 Identities=14% Similarity=0.084 Sum_probs=43.5
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhccC-CCCccccccccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQA-NNCPICRAPFRA 251 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs-~~CPiCR~~I~~ 251 (437)
.....|+||++-..++|++||||. ||..|...|.... ..||+||.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 456899999999999999999999 9999999998764 469999998864
No 65
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.63 E-value=4.5e-05 Score=64.67 Aligned_cols=50 Identities=28% Similarity=0.636 Sum_probs=39.8
Q ss_pred ccccccccccC-eEEECcCCccccHhhHHHHhcc-CCCCccccccccceEEEE
Q psy6091 206 ECVICMCDIRD-TLILPCRHLCLCHSCADSLRYQ-ANNCPICRAPFRALLQIR 256 (437)
Q Consensus 206 eC~ICl~~~~d-~vlLPC~H~C~C~~Ca~~l~~q-s~~CPiCR~~I~~ll~I~ 256 (437)
-|.+|--.... ..++||+|. ||.+|+..|..+ .+.||+||.+|..+-++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~ 54 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIEQCT 54 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEEEEE
T ss_pred ecCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeEEec
Confidence 46777543333 578999998 999999999754 589999999999888753
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.61 E-value=2.4e-05 Score=59.97 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=42.6
Q ss_pred ccccccccccccCeEEE-CcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 204 GSECVICMCDIRDTLIL-PCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 204 ~~eC~ICl~~~~d~vlL-PC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
...|+||++-..|+++. +|||. +|..|...|......||++|.++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 46899999999999999 99999 9999999999877889999999864
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.58 E-value=2.8e-05 Score=59.60 Aligned_cols=49 Identities=18% Similarity=0.444 Sum_probs=39.5
Q ss_pred CCccccccccccccCeEEECcCCc----cccHhhHHHHhcc--CCCCcccccccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHL----CLCHSCADSLRYQ--ANNCPICRAPFR 250 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~----C~C~~Ca~~l~~q--s~~CPiCR~~I~ 250 (437)
+....|.||++...+.+++||.+. .+...|+..|... ...||+||..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 356799999987777778997652 3899999999865 468999999875
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.57 E-value=1.9e-05 Score=64.29 Aligned_cols=44 Identities=23% Similarity=0.588 Sum_probs=34.2
Q ss_pred ccccccccccccCe--EE-ECcCCccccHhhHHHHhcc--------CCCCcc--cccc
Q psy6091 204 GSECVICMCDIRDT--LI-LPCRHLCLCHSCADSLRYQ--------ANNCPI--CRAP 248 (437)
Q Consensus 204 ~~eC~ICl~~~~d~--vl-LPC~H~C~C~~Ca~~l~~q--------s~~CPi--CR~~ 248 (437)
...|.||++..... +. .+|+|. ||..|...+... .-.||. ||..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 56899999876653 32 389999 999999887642 238999 9998
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.52 E-value=4.6e-05 Score=74.55 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=41.0
Q ss_pred CccccccccccccCeEEE-CcCCccccHhhHHHHhccC--CCCcc--cccccc
Q psy6091 203 GGSECVICMCDIRDTLIL-PCRHLCLCHSCADSLRYQA--NNCPI--CRAPFR 250 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlL-PC~H~C~C~~Ca~~l~~qs--~~CPi--CR~~I~ 250 (437)
....|+||++...++|.. .|||. ||..|...|+... ..||+ ||..+.
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 457899999999999986 99998 9999999998654 47999 999765
No 70
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.21 E-value=0.00029 Score=56.38 Aligned_cols=50 Identities=18% Similarity=0.350 Sum_probs=40.1
Q ss_pred CCCccccccccccccCeE-EECcCCccccHhhHHHHhccC--CCCccccccccc
Q psy6091 201 EDGGSECVICMCDIRDTL-ILPCRHLCLCHSCADSLRYQA--NNCPICRAPFRA 251 (437)
Q Consensus 201 ed~~~eC~ICl~~~~d~v-lLPC~H~C~C~~Ca~~l~~qs--~~CPiCR~~I~~ 251 (437)
.+...+|.||++....-. ..-|+|. |...|+..|+... ..||+||+.+..
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cCCCCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 345679999998766533 2379999 9999999998876 799999988763
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.66 E-value=0.00035 Score=70.98 Aligned_cols=51 Identities=20% Similarity=0.391 Sum_probs=38.8
Q ss_pred CCCCccccccccccccC-e-------EEECcCCccccHhhHHHHhccC-----------CCCccccccccc
Q psy6091 200 CEDGGSECVICMCDIRD-T-------LILPCRHLCLCHSCADSLRYQA-----------NNCPICRAPFRA 251 (437)
Q Consensus 200 ~ed~~~eC~ICl~~~~d-~-------vlLPC~H~C~C~~Ca~~l~~qs-----------~~CPiCR~~I~~ 251 (437)
.++...+|.|||+...+ - .-..|+|. |...|...|.... +.||.||++|..
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 34567899999986655 1 12479999 9999999997532 579999998864
No 72
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.17 E-value=0.025 Score=47.50 Aligned_cols=49 Identities=29% Similarity=0.620 Sum_probs=40.1
Q ss_pred ccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceEE
Q psy6091 204 GSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQ 254 (437)
Q Consensus 204 ~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll~ 254 (437)
...|..|.-..+.. |-=..|. +|..|...|...++.||||..++..-|+
T Consensus 28 ~~nCKsCWf~~k~L-V~C~dHY-LCl~CLtlmL~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 28 PQFCKSCWFENKGL-VECNNHY-LCLNCLTLLLSVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp CCCCCSSCSCCSSE-EECSSCE-EEHHHHHHTCSSSSEETTTTEECCCCSC
T ss_pred cccChhhccccCCe-eeecchh-hHHHHHHHHHhhccCCcccCCcCCccee
Confidence 46799999776643 3445677 9999999999999999999999887663
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=90.52 E-value=0.21 Score=47.61 Aligned_cols=48 Identities=17% Similarity=0.335 Sum_probs=37.2
Q ss_pred CccccccccccccCeEEEC-cCCccccHhhHHHHhccC--CCCccccccccc
Q psy6091 203 GGSECVICMCDIRDTLILP-CRHLCLCHSCADSLRYQA--NNCPICRAPFRA 251 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlLP-C~H~C~C~~Ca~~l~~qs--~~CPiCR~~I~~ 251 (437)
.-..|.||.+....-..=+ |+|. |...|...|.... ..||.|+.....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 4679999998666544333 8888 9999999997654 499999997654
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=84.34 E-value=0.33 Score=39.33 Aligned_cols=31 Identities=23% Similarity=0.592 Sum_probs=25.6
Q ss_pred cccccccccc-ccCeEE--ECcCCccccHhhHHHH
Q psy6091 204 GSECVICMCD-IRDTLI--LPCRHLCLCHSCADSL 235 (437)
Q Consensus 204 ~~eC~ICl~~-~~d~vl--LPC~H~C~C~~Ca~~l 235 (437)
+..|.||++. ..+++. +.|+|. ||..|.+.+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChH-HhHHHCHHH
Confidence 3589999975 566666 999999 999999984
No 75
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=50.12 E-value=1.2 Score=34.48 Aligned_cols=43 Identities=30% Similarity=0.854 Sum_probs=24.5
Q ss_pred CCCccccccccc-cccCeEEECcCCcc------ccHhhHHHHhccCC----CCccccc
Q psy6091 201 EDGGSECVICMC-DIRDTLILPCRHLC------LCHSCADSLRYQAN----NCPICRA 247 (437)
Q Consensus 201 ed~~~eC~ICl~-~~~d~vlLPC~H~C------~C~~Ca~~l~~qs~----~CPiCR~ 247 (437)
.++...|.||+- ...| -|||.| +|..|--.+...++ .|-+||+
T Consensus 6 ~~d~~~C~iC~KTKFAD----G~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFAD----GCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCS----SCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceecc----CCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 345679999984 3333 367764 45555544443332 4555554
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=48.62 E-value=11 Score=38.50 Aligned_cols=47 Identities=23% Similarity=0.540 Sum_probs=31.0
Q ss_pred CccccccccccccC-eEEECcCCccccHhhHHHHh--cc--CCCCcccccccc
Q psy6091 203 GGSECVICMCDIRD-TLILPCRHLCLCHSCADSLR--YQ--ANNCPICRAPFR 250 (437)
Q Consensus 203 ~~~eC~ICl~~~~d-~vlLPC~H~C~C~~Ca~~l~--~q--s~~CPiCR~~I~ 250 (437)
....|+|-+..... +.-..|.|+ -|++-..-|. .+ .-.||+|.+.+.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~Hl-QCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHL-QCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSS-CCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred EeecCCCccccccccCcCCcCCCc-ceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 35678888776666 455689998 4555443332 22 349999998773
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=44.12 E-value=13 Score=37.67 Aligned_cols=46 Identities=22% Similarity=0.439 Sum_probs=31.4
Q ss_pred ccccccccccccC-eEEECcCCccccHhhHHHHhc--c--CCCCcccccccc
Q psy6091 204 GSECVICMCDIRD-TLILPCRHLCLCHSCADSLRY--Q--ANNCPICRAPFR 250 (437)
Q Consensus 204 ~~eC~ICl~~~~d-~vlLPC~H~C~C~~Ca~~l~~--q--s~~CPiCR~~I~ 250 (437)
...|+|-+..... +.-..|.|+ -|.+-..-+.. + .-.||+|.+.+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~Hl-qCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHL-QCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCC-CCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccCCcCCCCCCC-ccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 4679988766666 455689998 56655544432 2 349999999886
No 78
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=40.61 E-value=12 Score=28.53 Aligned_cols=40 Identities=23% Similarity=0.681 Sum_probs=31.3
Q ss_pred cccccccccccCeEE---ECcCCccccHhhHHHHhccCCCCccc
Q psy6091 205 SECVICMCDIRDTLI---LPCRHLCLCHSCADSLRYQANNCPIC 245 (437)
Q Consensus 205 ~eC~ICl~~~~d~vl---LPC~H~C~C~~Ca~~l~~qs~~CPiC 245 (437)
..|.-|.....+... --|++. ||.+|..-+...-.+||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNV-FCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCC-BCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcC-cccchhHHHHhhccCCcCC
Confidence 458888876655332 348888 9999999988888999998
No 79
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=39.71 E-value=5.3 Score=39.55 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=37.8
Q ss_pred CCccccccccccccCeEEEC----cCC-ccccHhhHHHHhccCCCCcccccc
Q psy6091 202 DGGSECVICMCDIRDTLILP----CRH-LCLCHSCADSLRYQANNCPICRAP 248 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLP----C~H-~C~C~~Ca~~l~~qs~~CPiCR~~ 248 (437)
.....|+||=+.+.-.++.. =|+ .+.|.-|...|+...-+||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 45789999998887766642 222 349999999999999999999997
No 80
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=38.03 E-value=23 Score=29.35 Aligned_cols=50 Identities=32% Similarity=0.727 Sum_probs=34.8
Q ss_pred CccccccccccccCe----EEECcCCc--cccHhhHHHHhcc-CCCCccccccccce
Q psy6091 203 GGSECVICMCDIRDT----LILPCRHL--CLCHSCADSLRYQ-ANNCPICRAPFRAL 252 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~----vlLPC~H~--C~C~~Ca~~l~~q-s~~CPiCR~~I~~l 252 (437)
+...|.||=+..-.+ ++.-|..- -+|..|.+--+.. ...||.|.+.....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 567999997653221 34444332 1799999998866 46999999998754
No 81
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=36.30 E-value=28 Score=39.52 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=44.5
Q ss_pred CCccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccc
Q psy6091 202 DGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ 251 (437)
...-.|+|-++-.+|+|++|.||..+=+.+.+.|......||+=|+++..
T Consensus 889 P~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred cHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 35678999999999999999997559999999999888899999998875
No 82
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=30.36 E-value=26 Score=27.53 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=26.4
Q ss_pred CCCccccccccccccCeEEECc-CCccccHhhHHHHh
Q psy6091 201 EDGGSECVICMCDIRDTLILPC-RHLCLCHSCADSLR 236 (437)
Q Consensus 201 ed~~~eC~ICl~~~~d~vlLPC-~H~C~C~~Ca~~l~ 236 (437)
++...-|.||.+. ....-+-| +-+ +|..|.+.+.
T Consensus 5 ~ee~pWC~ICneD-AtlrC~gCdgDL-YC~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNED-ATLRCAGCDGDL-YCARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSC-CCEEETTTTSEE-ECSSHHHHHT
T ss_pred CcCCCeeEEeCCC-CeEEecCCCCce-ehHHHHHHHc
Confidence 3456789999987 45667788 665 9999999885
No 83
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=27.09 E-value=28 Score=28.49 Aligned_cols=34 Identities=29% Similarity=0.695 Sum_probs=27.8
Q ss_pred CCccccccccccccCeEEECc----CCccccHhhHHHHh
Q psy6091 202 DGGSECVICMCDIRDTLILPC----RHLCLCHSCADSLR 236 (437)
Q Consensus 202 d~~~eC~ICl~~~~d~vlLPC----~H~C~C~~Ca~~l~ 236 (437)
..-..|.+|.+...|+-++-| .|. ||..|.+...
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~Hk-FCFpCsr~sI 50 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHK-FCFPCSRESI 50 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCE-ECHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCe-eeccccHHHH
Confidence 346789999999999877777 577 9999998764
No 84
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=24.73 E-value=9 Score=31.11 Aligned_cols=43 Identities=30% Similarity=0.746 Sum_probs=31.4
Q ss_pred cccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceE
Q psy6091 205 SECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALL 253 (437)
Q Consensus 205 ~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll 253 (437)
..|+.|.....+. +..-.|..|...+.... .||-|.+++..+.
T Consensus 3 ~~CP~C~~~l~~~-----~~~~~C~~C~~~~~~~a-fCPeCgq~Le~lk 45 (81)
T 2jrp_A 3 ITCPVCHHALERN-----GDTAHCETCAKDFSLQA-LCPDCRQPLQVLK 45 (81)
T ss_dssp CCCSSSCSCCEEC-----SSEEECTTTCCEEEEEE-ECSSSCSCCCEEE
T ss_pred CCCCCCCCccccC-----CCceECccccccCCCcc-cCcchhhHHHHHH
Confidence 5799997654332 11226999999887776 9999999998743
No 85
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.69 E-value=8.7 Score=32.38 Aligned_cols=45 Identities=22% Similarity=0.538 Sum_probs=31.9
Q ss_pred CccccccccccccCeEEECcCCccccHhhHHHHhccCCCCccccccccceE
Q psy6091 203 GGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALL 253 (437)
Q Consensus 203 ~~~eC~ICl~~~~d~vlLPC~H~C~C~~Ca~~l~~qs~~CPiCR~~I~~ll 253 (437)
+...|++|..+..+. +..-.|..|...+.. ...||-|.+++..+.
T Consensus 31 M~~~CP~Cq~eL~~~-----g~~~hC~~C~~~f~~-~a~CPdC~q~LevLk 75 (101)
T 2jne_A 31 MELHCPQCQHVLDQD-----NGHARCRSCGEFIEM-KALCPDCHQPLQVLK 75 (101)
T ss_dssp CCCBCSSSCSBEEEE-----TTEEEETTTCCEEEE-EEECTTTCSBCEEEE
T ss_pred ccccCccCCCcceec-----CCEEECccccchhhc-cccCcchhhHHHHHH
Confidence 457999998664432 223269999987643 368999999988654
No 86
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=20.68 E-value=11 Score=33.63 Aligned_cols=45 Identities=20% Similarity=0.537 Sum_probs=30.7
Q ss_pred Cccccccccccc-----cCeEEECcCCccccHhhHHHHhcc-CCCCcccccc
Q psy6091 203 GGSECVICMCDI-----RDTLILPCRHLCLCHSCADSLRYQ-ANNCPICRAP 248 (437)
Q Consensus 203 ~~~eC~ICl~~~-----~d~vlLPC~H~C~C~~Ca~~l~~q-s~~CPiCR~~ 248 (437)
+...|.+|.... ...+-.-|.|. +|..|....+.. .-.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~-VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLF-VCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCE-ECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCch-hhcccccccCCCCcEeeHHHHHH
Confidence 467999998753 33556678888 899998543322 1378888775
Done!