RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6091
(437 letters)
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 77.9 bits (192), Expect = 2e-18
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 196 GCEDCEDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQI 255
G E E+ +CV+C + ++LPCRH CLC C + CP+CR + +
Sbjct: 7 GVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQESFAL 62
Query: 256 R 256
Sbjct: 63 S 63
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 75.3 bits (185), Expect = 2e-17
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 198 EDCEDGGSECVICMCDIRDTLIL--PCRHLCLCHSCADSLRYQANNCPICRAPFRALLQI 255
EDC++ C +C RD I+ HL C CA L+ +CPIC+ + ++++
Sbjct: 1 EDCQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKV 60
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation,
alternative splicing, HOST-virus interaction, UBL
conjugation pathway, zinc-finger, polymorphism; HET:
FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Length = 64
Score = 70.2 bits (172), Expect = 1e-15
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 201 EDGGSECVICMCDIRDTLILPCR--HLCLCHSCADSLRYQANNCPICRAPFRALLQI 255
+ CVIC ++ I+ + HL C +CA L+ + CP+CR P + ++
Sbjct: 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLT 61
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 65.6 bits (160), Expect = 7e-14
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 207 CVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQI 255
C++C + ++ PC H C SCA L+ +CP+CR+ + +
Sbjct: 21 CMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHV 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 65.2 bits (159), Expect = 1e-13
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQI 255
C ICM + +PC HL C CA+++ CP+C +I
Sbjct: 27 LCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKI 72
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 65.4 bits (157), Expect = 8e-12
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 187 ENKNNEQYKGCEDCEDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICR 246
E+ + + C +CM + +PC HL +C CA SLR CPICR
Sbjct: 278 EDVSGLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICR 333
Query: 247 APFRALLQI 255
+ ++
Sbjct: 334 GIIKGTVRT 342
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 54.8 bits (131), Expect = 2e-08
Identities = 26/122 (21%), Positives = 37/122 (30%), Gaps = 2/122 (1%)
Query: 129 IAIQCVTTSDDGQEDQKQCHTTIAVVDHHADDSYTLKGLKQKLYVDGLCYLLQEIYGIEN 188
AI VT + + + + + L + D
Sbjct: 257 WAIGYVTADGNILQTIPHNKPLFQALIDGFREGFYLFPDGRNQNPDLTGLCEPTPQDHIK 316
Query: 189 KNNEQYKGCEDCEDGGSECVICMCDIRDTLILPCRHLCLCHSCADS-LRYQANNCPICRA 247
EQY+ + C IC + +D I PC HL C SC S + CP CR
Sbjct: 317 VTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRC 375
Query: 248 PF 249
Sbjct: 376 EI 377
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 7e-08
Identities = 44/293 (15%), Positives = 89/293 (30%), Gaps = 85/293 (29%)
Query: 12 PQSNEPYKTL--KALINIRKESLRFVKVNDESQRQVYNIEFIFDCDVPCSITVHFFVTED 69
+ + +K + L I + SL ++ + R++++ +F I +
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAE--YRKMFDRLSVFPPSAH--IPTI--LLSL 394
Query: 70 IMGNTISYIPKKSNPCPVVKTFHYKKGASQLFCQP--GVTFIPSQYEDDELMYNIDKEII 127
I + I VV H S + QP IPS Y +
Sbjct: 395 IWFDVIKSDVMV-----VVNKLHKY---SLVEKQPKESTISIPSIYLE------------ 434
Query: 128 PIAIQCVTTSDDGQEDQKQCHTTIAVVDH-HADDSYTLKGLKQKLYVDGLCYLLQEI-YG 185
+ ++ E++ H +I VDH + ++ L Y+D Y I +
Sbjct: 435 -LKVKL--------ENEYALHRSI--VDHYNIPKTFDSDDL-IPPYLDQ--YFYSHIGHH 480
Query: 186 IENKNNEQYKGCEDCEDGGSECVICMCD---IRDTLILPCRHLCLCHSCADSL------- 235
++N + + + + D + + S ++L
Sbjct: 481 LKNIEHPERM---------TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 236 RYQANNCP-------------------ICRAPFRALLQIRALQKNSSHVSETS 269
Y +N P + + + LL+I AL + E +
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI-ALMAEDEAIFEEA 583
Score = 50.2 bits (119), Expect = 1e-06
Identities = 54/419 (12%), Positives = 111/419 (26%), Gaps = 129/419 (30%)
Query: 44 QVYNIEFI--FDC-DVPCSITVHFFVTEDIMGNTISYIPKKSNPCPVVKTFHYKKGASQL 100
V+ F+ FDC DV +D+ + +S K ++ + G +L
Sbjct: 23 SVFEDAFVDNFDCKDV-----------QDMPKSILS----KEEIDHIIMSKDAVSGTLRL 67
Query: 101 F---CQPGVTFIPSQYEDDELMYNIDKEIIPIAIQCVTTSDDG----QEDQKQCHTTIAV 153
F + ++ ++ L N + PI + S ++ + +
Sbjct: 68 FWTLLSKQEEMV-QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 154 VDHHADDSYTLKGLKQKLY----VDGLCYLLQEIYGIENKNNEQYKGC-------EDCED 202
++ L+Q L + I G+ G + C
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVL-----IDGV--------LGSGKTWVALDVCLS 173
Query: 203 GGSECV---------ICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALL 253
+C + C+ +T++ + L + N L
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY--------QIDPNWTSRSDHSSNIKL 225
Query: 254 QIRALQKNSSHVSETSS--------DNIPPGYDAVSLIEALNGPCAVRHPPLVVSLDPLA 305
+I ++Q + ++ N+ +A A N C + L+
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNV---QNA-KAWNAFNLSCKI----LL------- 270
Query: 306 ECATTAALNRRASAERSGKGSKVSAPSVTSQTQ---EGEEKSVSDANVPETPDDD--SEA 360
TT R + + S+ + E KS+ + D E
Sbjct: 271 ---TT----RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREV 322
Query: 361 EKLSPLL----------DAATSTQLDRSN----------SVTDTDTEYYKPTSAGAEYY 399
+P AT N S+ + Y+ + +
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR------KMF 375
Score = 45.6 bits (107), Expect = 2e-05
Identities = 74/471 (15%), Positives = 149/471 (31%), Gaps = 150/471 (31%)
Query: 8 PYPPPQSN--EPYKTLK-ALINIR--------------K-----ESLRFVKVNDESQRQV 45
+ + +PY L+ AL+ +R K + KV + ++
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 46 YNIEFIFDCDVPCSITVHFFVTEDIMGN-----TISYIPKKSNPCPVVKTFHYKKGA-SQ 99
+ + +C+ P ++ +++ ++ + + + H + +
Sbjct: 185 FWLNLK-NCNSPETVL-------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 100 LFCQPGVTFIPSQYEDDEL-MYNI-DKEII-PIAIQC---VTTSDDGQEDQKQCHTTIAV 153
L YE+ L + N+ + + + C +TT D TT +
Sbjct: 237 LLKSK-------PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 154 VDHHADDSYTLKGLKQKLYVDGLCYLLQEIYGIENKNNEQYKGCEDCEDGGSECVICMCD 213
H + T +K LL + +D E +
Sbjct: 290 SLDHHSMTLTPDEVKS---------LLLKYLDC------------RPQDLPRE----VLT 324
Query: 214 IRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQIRALQKNSSHVSETSSDNI 273
P R L + A+S+R + + L + + E+S + +
Sbjct: 325 -----TNP-RRLSI---IAESIRD-----GLATWDNWKHVNCDKL----TTIIESSLNVL 366
Query: 274 PPG-----YDAVSLIEALNGPCAVRHPPLVVSL---DPLAECA--TTAALNRRASAERSG 323
P +D +S+ P + P +++SL D + L++ + E+
Sbjct: 367 EPAEYRKMFDRLSVF-----PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 324 KGSKVSAPSV---TSQTQEGE---EKSVSDA-NVPET--------PDDDS---------- 358
K S +S PS+ E E +S+ D N+P+T P D
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 359 ----EAEKLSPL----LD--------AATSTQLDRSNSVTDT--DTEYYKP 391
E+++ LD ST + S S+ +T ++YKP
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 46.6 bits (111), Expect = 2e-07
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 202 DGGSECVICMCDIRD-TLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALL 253
C IC+ D + ++ LPC H C+ C Q CP+C+ P +++
Sbjct: 3 TVAERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVV 54
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 45.3 bits (108), Expect = 6e-07
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 202 DGGSECVICMCDIRD----TLILPCRHLCLCHSCADSLRYQANNCPICRAPF 249
G S C IC+ DI +LPC HL L +C + + + CP+C P
Sbjct: 3 SGSSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPS 53
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 44.8 bits (106), Expect = 1e-06
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPF 249
EC IC+ + LPC+H+ C+ C + C +CR
Sbjct: 17 ECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEI 59
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 45.3 bits (107), Expect = 2e-06
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 206 ECVICMCDIRDTLILP-CRHLCLCHSC-ADSLRYQANNCPICRAPF--RALLQIRALQK 260
C ICM +RD + P C LC C SC L Q CP CRAP R L+ R ++
Sbjct: 24 RCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEE 81
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 45.7 bits (108), Expect = 2e-06
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSC-ADSLRYQANNCPICRAPFRALLQIRALQKN 261
+C+ C + + C+H +C C S R Q +CP CR + A+Q N
Sbjct: 54 QCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLG---RSYAMQVN 106
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 2e-06
Identities = 80/483 (16%), Positives = 136/483 (28%), Gaps = 171/483 (35%)
Query: 3 PMALFPY------------PPP-----QSNEPYKTLKALINIRKESLRFV--KVNDESQR 43
P A F P P +EP + + L +V V
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEP----TTPAELVGKFLGYVSSLVEPSKVG 78
Query: 44 QVYNI-EFI---FDCDVPCSITVHFFVTEDIMGNTISYIPKKSNPCPVVKTFHY------ 93
Q + F+ +H + ++ + + K ++K +
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAK-LLQENDTTLVKTKE---LIKNY-ITARIMA 133
Query: 94 -----KKGASQLF--CQPGVTFIPSQY------ED--DEL--MYNIDKE-----IIPIAI 131
KK S LF G + + + +D +EL +Y I A
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 132 QCVTTSDDGQEDQKQCHTTIAVVD--HHADD------------SYTLKGLKQKLYVDGLC 177
+ +K + +++ + + S L G+ Q L
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ-L----AH 248
Query: 178 YL-LQEIYGIENKN-NEQYKGCEDCEDG-GSECVICMCDIRDTLI------------LPC 222
Y+ ++ G KG G + I D ++ +
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 223 RHLCLCHSCA-----------DSLRYQANNCPICRAPFRALLQIRALQKNS--SHVSETS 269
R C+ DSL P +P +L I L + +V++T+
Sbjct: 309 R----CYEAYPNTSLPPSILEDSLE-NNEGVP---SP---MLSISNLTQEQVQDYVNKTN 357
Query: 270 SDNIPPGYD-AVSLIEALNGPCAVRHPPLVVSLDPLAECATTAALNRRASAERSGKGSKV 328
S ++P G +SL+ NG ++ LVVS P +L R K
Sbjct: 358 S-HLPAGKQVEISLV---NGA---KN--LVVSGPP-------QSLYGLNLTLR-----KA 396
Query: 329 SAPSVTSQTQEGEEKSVSDANVPETPDDDSEAEKL--------------SPLLDAATSTQ 374
APS Q++ +P SE KL S LL A+
Sbjct: 397 KAPSGLDQSR-----------IP-----FSE-RKLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 375 LDR 377
Sbjct: 440 NKD 442
Score = 32.7 bits (74), Expect = 0.26
Identities = 32/254 (12%), Positives = 64/254 (25%), Gaps = 93/254 (36%)
Query: 231 CADSLRYQANNC-PICRAPFRALLQI-------RALQKNSSH--VSETSSDNIPPGYDAV 280
L Y ++ P F +L + L+ N H ++ +N
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 281 SLIEA-------LNGPCAVRHPPLVVSLDPLAECATTAALNRRASAERS-------GKGS 326
LI+ P + AL R + G+G+
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNS---------------ALFRAVGEGNAQLVAIFGGQGN 165
Query: 327 KVSAPSVTSQTQEGEEKSVSDANVPETP-DD-----DSEAEKLSPLLDAATSTQLDRSNS 380
+ ++ + + L+ + T + +
Sbjct: 166 ------------------------TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 381 VTDTDTEYYK----------PTSA-GAEYYGTKPSS-------ATAEYYGTKPTSATAEY 422
D + + + P++ +Y + P S A Y TA+
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV------VTAKL 255
Query: 423 YGTKPPKIRKTSKS 436
G P ++R K
Sbjct: 256 LGFTPGELRSYLKG 269
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 44.4 bits (105), Expect = 3e-06
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 198 EDCEDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAP 248
+ E+ C IC ++ ++ CRH C SCA C IC P
Sbjct: 9 SEEEEIPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQP 58
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 43.9 bits (104), Expect = 3e-06
Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 198 EDCEDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAP 248
+ D EC ICM D ILPC H C C D + NCPICR
Sbjct: 10 KQLTDE-EECCICMDGRADL-ILPCAH-SFCQKCIDKWSDRHRNCPICRLQ 57
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 43.2 bits (102), Expect = 8e-06
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 206 ECVICMCDIRDTL----ILPCRHLCLCHSCADSLRYQANN---CPICRAPFRALLQIRAL 258
EC ICM + +L C H +C C + L + N CP C R + + L
Sbjct: 17 ECPICMESFTEEQLRPKLLHCGH-TICRQCLEKLLASSINGVRCPFCSKITR-ITSLTQL 74
Query: 259 QKN 261
N
Sbjct: 75 TDN 77
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 42.5 bits (100), Expect = 8e-06
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSC-ADSLRYQANNCPICRAPFR 250
+C C + C H C SC A L + C C+
Sbjct: 17 KCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIV 61
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 41.6 bits (98), Expect = 1e-05
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFR 250
C C + + +LPC H LC C ++ Q CPIC+AP+
Sbjct: 8 RCQQCQAEAKCPKLLPCLH-TLCSGCLEASGMQ---CPICQAPWP 48
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 41.8 bits (98), Expect = 1e-05
Identities = 15/55 (27%), Positives = 18/55 (32%), Gaps = 8/55 (14%)
Query: 202 DGGSECVICMCDIRDTL-------ILPCRHLCLCHSCADSLRYQANNCPICRAPF 249
G C ICM + + C H+ C C AN CP CR
Sbjct: 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKI 66
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 42.0 bits (98), Expect = 1e-05
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 198 EDCEDGGSECVICM--CDIRDTLILPC-RHLCLCHSCADSLRYQANN-CPICRAPF 249
D ++ EC +CM +I D PC +C C +R N CP CR P+
Sbjct: 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 43.0 bits (101), Expect = 2e-05
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSC-ADSLRYQANNCPICRAPFRALLQIRALQKN 261
+C ICM + + + LPC H LC C ++ + CP CR + + + +
Sbjct: 17 QCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNS 72
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 41.7 bits (98), Expect = 2e-05
Identities = 15/56 (26%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 201 EDGGSECVICMCDIRDTL-------ILPCRHLCLCHSCADSLRYQANNCPICRAPF 249
G C ICM + + C H+ C C AN CP CR
Sbjct: 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKI 61
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 42.3 bits (99), Expect = 5e-05
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSC-ADSLRYQANNCPICRAPFRALLQIRALQKN 261
CV C + + C H +C C S + Q +CP CR Q + N
Sbjct: 80 MCVCCQELVYQPVTTECFH-NVCKDCLQRSFKAQVFSCPACRHDLG---QNYIMIPN 132
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 42.3 bits (99), Expect = 6e-05
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFR 250
+C+IC + + L C H C C + + CPICR +
Sbjct: 66 QCIICSEYFIEAVTLNCAH-SFCSYCINEWMKRKIECPICRKDIK 109
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 39.8 bits (93), Expect = 6e-05
Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 8/51 (15%)
Query: 206 ECVICMCDIRDTL-------ILPCRHLCLCHSCADSLRYQANNCPICRAPF 249
C ICM + + C H+ C C AN CP CR
Sbjct: 5 SCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKI 54
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 39.6 bits (93), Expect = 8e-05
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 198 EDCEDGGSECVICMCD--IRDTL-ILPCRHLCLCHS-CADS-LRYQANNCPICRAP 248
+ + + CV+CMCD R L +LPC H H+ C D L+ CPICRA
Sbjct: 17 NNHQSEQTLCVVCMCDFESRQLLRVLPCNH--EFHAKCVDKWLKANR-TCPICRAD 69
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 39.2 bits (92), Expect = 1e-04
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 207 CVICMCDIRDTLILPCRH----LCLCHSCADSLRYQAN--NCPICRAPFRALLQIRALQK 260
C IC+ + + L L C H C+ S +++ +CP+C + LQ
Sbjct: 15 CPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY----SFEHLQA 70
Query: 261 N 261
N
Sbjct: 71 N 71
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 40.3 bits (94), Expect = 2e-04
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSC-ADSLRYQANNCPICRAPFR 250
C IC + D + C+H C C L+ + CP CR P
Sbjct: 25 SCQICEHILADPVETSCKH-LFCRICILRCLKVMGSYCPSCRYPCF 69
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 38.9 bits (91), Expect = 2e-04
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 207 CVICMCDIRDTLILPCRH----LCLCHSCADSLRYQAN-NCPICRAPFRALLQIRALQKN 261
C IC+ +++ + C H C+ + + NCP+CR P+ L+ N
Sbjct: 22 CPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY----PFGNLKPN 77
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 38.8 bits (91), Expect = 2e-04
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 207 CVICMCDIRDTLILPCRH----LCLCHSCADSLRYQAN-NCPICRAPFRALLQIRALQKN 261
C IC+ + L L C H CL + S+ + +CP+CR + Q ++ N
Sbjct: 22 CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISY----QPENIRPN 77
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace
motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Length = 60
Score = 38.2 bits (89), Expect = 3e-04
Identities = 9/63 (14%), Positives = 16/63 (25%), Gaps = 20/63 (31%)
Query: 201 EDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRY-------------QANNCPICRA 247
++ C IC ++ + C C L + C IC
Sbjct: 3 DEDVPVCWICNEELGNERFRACG-------CTGELENVHRSCLSTWLTISRNTACQICGV 55
Query: 248 PFR 250
+
Sbjct: 56 VYN 58
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural
genomics, PSI-2, protein struc initiative; NMR {Homo
sapiens}
Length = 91
Score = 38.9 bits (91), Expect = 3e-04
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 6/60 (10%)
Query: 194 YKGCEDCEDGGSECVICMCDIRD---TLILPCRHLCLCHSCADS-LRYQANNCPICRAPF 249
C IC + LPC H C L+ ++ CP+CR F
Sbjct: 30 VTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQ-KSGTCPVCRCMF 87
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 39.4 bits (92), Expect = 3e-04
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSC-ADSLRYQANNCPICRAPF 249
EC IC+ +R+ + PC H C +C S+R + CP+
Sbjct: 20 ECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEIL 63
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 78
Score = 38.2 bits (89), Expect = 3e-04
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 196 GCEDCEDGGSECVICMCDIRD---TLILPCRHLCLCHSCADS-LRYQANNCPICRAP 248
G E+ G EC +C D LPC HL SC L Q ++CP+CR
Sbjct: 7 GTEEHVGSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLE-QHDSCPVCRKS 61
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 39.7 bits (92), Expect = 4e-04
Identities = 14/57 (24%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSC-ADSLRYQANNCPICRAPFRALLQIRALQKN 261
C C +R C H C C A L NC C I L+ +
Sbjct: 33 LCSACRNVLRRPFQAQCGHRY-CSFCLASILSSGPQNCAACVHEGIYEEGISILESS 88
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 37.8 bits (88), Expect = 4e-04
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 201 EDGGSECVICMCD--IRDTL-ILPCRHLCLCHSCADSLRYQANNCPICRAP 248
+ C +C+ D RD L I PC+H C CP+C P
Sbjct: 12 LNLHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMP 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 40.1 bits (93), Expect = 4e-04
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSC-ADSLRYQANNCPICRAPF 249
EC IC+ +R+ + PC H C +C S+R + CP+
Sbjct: 20 ECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEIL 63
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn
binding domain, metal zinc, zinc-finger, metal binding
protein; NMR {Homo sapiens}
Length = 69
Score = 37.3 bits (87), Expect = 5e-04
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 201 EDGGSECVICMCDIR--DTL-ILPCRHLCLCH-SCADSLRYQANNCPICRAP 248
ED +C IC+ + + + LPC H L H C D CPICR
Sbjct: 11 EDTEEKCTICLSILEEGEDVRRLPCMH--LFHQVCVDQWLITNKKCPICRVD 60
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 38.3 bits (89), Expect = 6e-04
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 206 ECVICMCDIRD-TLILPCRHLCLCHSC-ADSLRYQANNCPICRAPFRALLQIRALQKN 261
CV+C D T I+ C H C +C L CPIC + ++ +
Sbjct: 17 MCVLCGGYFIDATTIIECLH-SFCKTCIVRYLETS-KYCPICDVQVHKTRPLLNIRSD 72
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 37.8 bits (88), Expect = 7e-04
Identities = 13/56 (23%), Positives = 15/56 (26%), Gaps = 6/56 (10%)
Query: 207 CVICMCDIRD-TLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQIRALQKN 261
C IC +I C H C C CP C L+ N
Sbjct: 25 CGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSYKTQCPTCCVTV----TEPDLKNN 75
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 37.6 bits (87), Expect = 0.001
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 207 CVICMCDIRDTLILP-CRHLCLCHSCADSLRYQANNCPICRAPFRALLQIRALQKN 261
C C +R+ + L C H C +C CP+C P I+ L+ N
Sbjct: 25 CSRCTNILREPVCLGGCEH-IFCSNCVS--DCIGTGCPVCYTPA----WIQDLKIN 73
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 37.4 bits (87), Expect = 0.001
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 207 CVICMCDIRDTLILPCRHLCLCHSC-ADSLRYQAN--NCPICRAPFRALLQIRALQKN 261
C IC+ I++ + C H C C L + CP+C+ R+LQ++
Sbjct: 24 CPICLELIKEPVSTKCDH-IFCKFCMLKLLNQKKGPSQCPLCKNDI----TKRSLQES 76
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 65
Score = 36.1 bits (83), Expect = 0.001
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 206 ECVICMCDI-----RDTLILPCRHLCLCHSCADSL-RYQANNCPICRAPFR 250
C C ++ C H LC SC D L A NCP C P R
Sbjct: 5 GCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLR 54
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 36.2 bits (84), Expect = 0.002
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 207 CVICMCDIRDTLILPCRH----LCLCHSCADSLRYQANNCPICRAPFR 250
C IC+ ++ + + C H C+ S CP+C+ R
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSC--GFFKCPLCKTSVR 68
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 35.9 bits (83), Expect = 0.002
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 206 ECVICMCDIRD-TLILPCRHLCLCHSC-ADSLRYQANNCPICRAPFR 250
C IC + D T I C H C SC Y N CP C
Sbjct: 17 LCSICKGYLIDATTITECLH-TFCKSCIVRHFYYS-NRCPKCNIVVH 61
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 35.3 bits (82), Expect = 0.002
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 9/53 (16%)
Query: 202 DGGSECVICMCDIRDT----LILPCRHLCLCH-SCADS-LRYQANNCPICRAP 248
D G EC +C+ ++ D + C H H C D L + CP+CR
Sbjct: 3 DDGVECAVCLAELEDGEEARFLPRCGH--GFHAECVDMWLGSHS-TCPLCRLT 52
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 37.3 bits (86), Expect = 0.003
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 207 CVICMCDIRDTL-ILPCRHLCLCHSC-ADSLRYQANNCPICRAPFRALLQIRA 257
C IC+ +++T+ C H C C +LR CP CR + +R
Sbjct: 57 CPICLDMLKNTMTTKECLH-RFCADCIITALRSGNKECPTCRKKLVSKRSLRP 108
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 35.3 bits (81), Expect = 0.003
Identities = 11/59 (18%), Positives = 15/59 (25%), Gaps = 4/59 (6%)
Query: 194 YKGCEDCEDGGSECVICMCDI-RDTLILPCRHLCLCHSCADSL--RYQANNCPICRAPF 249
G E D C IC + + C + C CP C +
Sbjct: 5 SSGRETYPDAVKICNICHSLLIQGQSCETCGI-RMHLPCVAKYFQSNAEPRCPHCNDYW 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 36.4 bits (83), Expect = 0.018
Identities = 13/67 (19%), Positives = 17/67 (25%), Gaps = 18/67 (26%)
Query: 201 EDGGSECVICMCDIRDTLILP--------CRHL----CL------CHSCADSLRYQANNC 242
++ C IC D +P C CL L C
Sbjct: 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQC 364
Query: 243 PICRAPF 249
P C+A
Sbjct: 365 PFCKAKL 371
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 32.9 bits (74), Expect = 0.041
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 207 CVICMCDIRD-TLILPCRHLCLCHSCADSLRYQANN-CPICRAP 248
C C I+ ++PC+H+ C+ CA + + CP C P
Sbjct: 4 CDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDP 46
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 31.4 bits (71), Expect = 0.094
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 207 CVICMCDIRD----TLILPCRHLCLCHSCADSLRYQANNCPICRAPF 249
C+ C + + + C H + C Q N CP+C+ +
Sbjct: 29 CLRCQAENKQEDCVVVWGECNH-SFHNCCMSLWVKQNNRCPLCQQDW 74
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 32.4 bits (73), Expect = 0.11
Identities = 14/52 (26%), Positives = 17/52 (32%), Gaps = 8/52 (15%)
Query: 206 ECVICMCDIRDTL-------ILPCRHLCLCHSCADSLRYQANNCPICRAPFR 250
C ICM + + C H+ C C AN CP CR
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKIN 59
Score = 28.6 bits (63), Expect = 2.0
Identities = 15/66 (22%), Positives = 19/66 (28%), Gaps = 8/66 (12%)
Query: 192 EQYKGCEDCEDGGSECVICMCDIRDT-------LILPCRHLCLCHSCADSLRYQANNCPI 244
+ G C ICM + + C H+ C C AN CP
Sbjct: 60 HKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPT 118
Query: 245 CRAPFR 250
CR
Sbjct: 119 CRKKIN 124
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 31.0 bits (70), Expect = 0.12
Identities = 15/75 (20%), Positives = 20/75 (26%), Gaps = 22/75 (29%)
Query: 198 EDCEDGGSECVICMC--DIRDTLILPCRHLCLCHSCADSLRY-------------QANNC 242
C IC C D LI PC C SL + C
Sbjct: 9 SITPSSQDICRICHCEGDDESPLITPCH-------CTGSLHFVHQACLQQWIKSSDTRCC 61
Query: 243 PICRAPFRALLQIRA 257
+C+ F ++
Sbjct: 62 ELCKYEFIMETKLSG 76
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 30.5 bits (69), Expect = 0.15
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 207 CVICMCDIRDTLILPCRHLCLCHSCADS--LRYQANNCPICRAPFRALLQIRA 257
C+IC + D +++PC C C + L + CP C + +
Sbjct: 18 CLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSG 70
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 31.0 bits (69), Expect = 0.25
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 22/66 (33%)
Query: 206 ECVICMCDIRD------------------TLILPCRHL----CLCHSCADSLRYQANNCP 243
+C+ICM + + C H CL + + + CP
Sbjct: 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86
Query: 244 ICRAPF 249
C+ +
Sbjct: 87 SCKTIY 92
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 28.8 bits (65), Expect = 0.41
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 207 CVICMCDIRDTLILPCRH----LCLCHSCADSLRYQANNCPIC 245
C +C+ +++ +I+ C H C+ D R CP+C
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLER--DFPCPVC 58
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
{Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
3c9b_A 3q33_B* 3q35_B* 3dm7_A
Length = 264
Score = 30.8 bits (69), Expect = 0.78
Identities = 19/150 (12%), Positives = 40/150 (26%), Gaps = 27/150 (18%)
Query: 19 KTLKALINIRKESLRFVKVNDESQRQVYNIEFIFDCDVP----CSITVHFFVTEDIMGNT 74
K + + I+ E ++ + ++I F F +T F + +
Sbjct: 78 KYIDTIDKIKVE--WLALESEMYDTRDFSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQE 135
Query: 75 ISYIPKKSNP-------CPVVKTFHYKKGASQ--------------LFCQPGVTFIPSQY 113
+ + P + K + + F G+
Sbjct: 136 DGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGMKTIFGWFRWTGLKPGKEFP 195
Query: 114 EDDELMYNIDKEIIPIAIQCVTTSDDGQED 143
D L +EI P ++ + ED
Sbjct: 196 HGDSLASLFSEEIYPFCVKYYAEAQRDLED 225
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 30.5 bits (68), Expect = 0.88
Identities = 18/151 (11%), Positives = 42/151 (27%), Gaps = 16/151 (10%)
Query: 106 VTFIPSQYEDDEL--MYNIDKEIIPIAIQCVTTSDDGQEDQKQCHTTIAVVDHHADDSYT 163
++ + + + ++EL + II S+ G + +
Sbjct: 86 ISKMATDFAENELDLFRKALELII--------DSETGFASSTNILNLVDQLKGKKMRKKE 137
Query: 164 LKGLKQKLYVDGLCYLLQEIYGIENKNNEQYKG--CEDCEDGGSECVICMCDI-RDTLIL 220
+ + QK + + + + + + + E D C IC + +
Sbjct: 138 AEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYIRETYPDAVKICNICHSLLIQGQSCE 197
Query: 221 PCRHLCLCHSCADSL--RYQANNCPICRAPF 249
C + C CP C +
Sbjct: 198 TCGI-RMHLPCVAKYFQSNAEPRCPHCNDYW 227
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 28.1 bits (63), Expect = 0.93
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 207 CVICMCDIRDTLILPCRH----LCLCHSCADSLRYQANNCPIC 245
C IC+ ++ + + C H C+ S CP+C
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCG--FFKCPLC 63
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA
processing, nucleus, spliceosome, RNA binding protein;
NMR {Saccharomyces cerevisiae}
Length = 109
Score = 29.1 bits (65), Expect = 1.1
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 197 CEDCEDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPF 249
CE C+ +C IC D+ + P R + +C +C S QA NC IC
Sbjct: 25 CEKCD---GKCPIC-----DSYVRPKRKVRVCENC--SFGKQAKNCIICNLNV 67
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition,
chaperone; 2.80A {Plasmodium falciparum}
Length = 193
Score = 28.6 bits (63), Expect = 2.8
Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 20/136 (14%)
Query: 15 NEPYKTLKALINIRKESLRFVKVNDESQRQVYNIEFIF-----DCDVPCSITVHFFVTED 69
E L L+ + +K N ++ Y I FIF + P ++ H +
Sbjct: 67 PEDIDILNHLVKLD------LKDNMDNNGS-YKITFIFGEKAKEFMEPLTLVKHVTFDNN 119
Query: 70 IMGNTISY---IPKKSNPCPVVKTFHYKKGA-SQLFCQPGVTFI--PSQYEDDELMYNID 123
+ I K P+ H + +++ + + ++ I
Sbjct: 120 --QEKVVECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFEWFTTDELQDKPDVGELIR 177
Query: 124 KEIIPIAIQCVTTSDD 139
+EI + ++
Sbjct: 178 REIWHNPLSYYLGLEE 193
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 29.4 bits (65), Expect = 2.8
Identities = 15/150 (10%), Positives = 35/150 (23%), Gaps = 20/150 (13%)
Query: 295 PPLVVSLDPLAECATTAALN----------RRASAERSGKGSKVSAPSVTSQTQEGEEKS 344
+ E TA L+ + + + K + +E +K
Sbjct: 797 RMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKG 856
Query: 345 VSDANVPETPDDDSEAEKLSPLLDAATSTQLDRSNSVTDTDTEYYKPTSAGAEYYG---- 400
+ + + ++ +D T +S ++ + + P G
Sbjct: 857 IKETKENDEEFYKNKYSSKPYKVDNMTRILPQQSRYISFIKDDRFVPVRKFKGNNGVVVL 916
Query: 401 --TKPSSATAEYYGTKPTSATAEYYGTKPP 428
+P T P
Sbjct: 917 RDREPKEP-VALIETVRQMKDVN---APLP 942
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast
collaboratory for structural genomics, structure
initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP:
d.58.58.1
Length = 85
Score = 26.8 bits (60), Expect = 3.5
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 21 LKALINIRKESLRFVKVNDESQRQVYNIE 49
LK +I+ +S+ K+ R+ IE
Sbjct: 49 LKKIIDENSDSVIIYKLRSMPPRETLGIE 77
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 27.0 bits (60), Expect = 4.4
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 207 CVICMCDIRDTLILPCRHLCLCHSCADS--LRYQANNCPICRAPFRALLQIRALQKN 261
C+IC + D +++PC C C + L + CP C + AL N
Sbjct: 16 CLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND---VSPDALIAN 69
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of
EIF4E, cytoplasm, HOST-virus interaction, lipoprotein,
membrane; NMR {Lassa virus josiah}
Length = 99
Score = 26.7 bits (58), Expect = 5.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 212 CDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAP 248
C + ++ C + LC +C L +N CPIC+ P
Sbjct: 34 CWFENKGLVECNNHYLCLNCLTLLLSVSNRCPICKMP 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.392
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,386,009
Number of extensions: 372722
Number of successful extensions: 890
Number of sequences better than 10.0: 1
Number of HSP's gapped: 815
Number of HSP's successfully gapped: 88
Length of query: 437
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 341
Effective length of database: 4,021,377
Effective search space: 1371289557
Effective search space used: 1371289557
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 59 (26.9 bits)