RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6091
(437 letters)
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 56.9 bits (137), Expect = 3e-11
Identities = 17/65 (26%), Positives = 23/65 (35%)
Query: 192 EQYKGCEDCEDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFRA 251
EQY+ + C IC + +D I PC HL + CP CR +
Sbjct: 11 EQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 70
Query: 252 LLQIR 256
I
Sbjct: 71 TEPIV 75
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 48.7 bits (116), Expect = 1e-08
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFR 250
C C + + +LPC H C C ++ CPIC+AP+
Sbjct: 8 RCQQCQAEAKCPKLLPCLHTL-CSGCLEASG---MQCPICQAPWP 48
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 49.2 bits (117), Expect = 1e-08
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 204 GSECVICMCDIRD-TLILPCRHLCLCHSCADSLRYQANNCPICRAPFRALLQ 254
C IC+ D + ++ LPC H C+ C Q CP+C+ P +++
Sbjct: 5 AERCPICLEDPSNYSMALPCLH-AFCYVCITRWIRQNPTCPLCKVPVESVVH 55
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 46.3 bits (109), Expect = 9e-08
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 4/48 (8%)
Query: 206 ECVICMCDIRDT----LILPCRHLCLCHSCADSLRYQANNCPICRAPF 249
EC +CM + C + + CP CR P+
Sbjct: 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 49
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 44.9 bits (106), Expect = 3e-07
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 202 DGGSECVICMCDIRD---TLILPCRHLCLCHSCADSLRYQANNCPICRAP 248
D G EC +C+ ++ D LP C D + CP+CR
Sbjct: 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLT 52
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 44.5 bits (105), Expect = 9e-07
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 207 CVICMCDIRDTLILPCRHLCLCHSC-ADSLRYQANNCPICRAPFRA 251
C IC + D + C+HL C C L+ + CP CR P
Sbjct: 26 CQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 43.9 bits (103), Expect = 2e-06
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANN---CPICRAPFRALLQIRALQKN 261
EC IC+ I++ + C H+ C C L Q CP+C+ R+LQ++
Sbjct: 23 ECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDI----TKRSLQES 76
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 38.2 bits (88), Expect = 1e-04
Identities = 6/52 (11%), Positives = 12/52 (23%), Gaps = 1/52 (1%)
Query: 198 EDCEDGGSECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPF 249
+ C + + + C H C CP+ +
Sbjct: 33 DLCIECQANQASATSEECTVAWGVCNH-AFHFHCISRWLKTRQVCPLDNREW 83
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 36.7 bits (84), Expect = 3e-04
Identities = 11/51 (21%), Positives = 13/51 (25%), Gaps = 5/51 (9%)
Query: 205 SECVICMCDIRD-----TLILPCRHLCLCHSCADSLRYQANNCPICRAPFR 250
C C ++ C H A NCP C P R
Sbjct: 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 36.2 bits (83), Expect = 0.001
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 10/69 (14%)
Query: 202 DGGSECVICMCDI---RDTLILPCRHLCLCHSCADSLRYQANN-------CPICRAPFRA 251
G S C +C+ + + T I C+ + + CP P +
Sbjct: 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62
Query: 252 LLQIRALQK 260
LQ ++
Sbjct: 63 HLQENEIEC 71
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 33.7 bits (76), Expect = 0.003
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 10/59 (16%)
Query: 198 EDCEDGGSECVICMCDIRDTLILPCRHLCLCH----SCADS--LRYQANNCPICRAPFR 250
ED C IC ++ + C SC + + C IC +
Sbjct: 4 EDVP----VCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 32.8 bits (74), Expect = 0.007
Identities = 9/44 (20%), Positives = 12/44 (27%)
Query: 207 CVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFR 250
C I R ++ P S + N PI P
Sbjct: 3 CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 46
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 31.7 bits (71), Expect = 0.036
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 206 ECVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFR 250
C C +R+ + L C +C CP+C P
Sbjct: 24 RCSRCTNILREPVCLGGCEHIFCSNCVS--DCIGTGCPVCYTPAW 66
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens)
[TaxId: 9606]}
Length = 222
Score = 31.1 bits (70), Expect = 0.18
Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 17/124 (13%)
Query: 19 KTLKALINIRKESLRFVKVNDESQRQVYNIEFIFDCDV---PCSITVHFFVTEDIMGNTI 75
+ + L + E + Y I+F FD + ++ F + E ++
Sbjct: 102 EAMHYLTRVEVTEF-------EDIKSGYRIDFYFDENPYFENKVLSKEFHMNESGDPSSK 154
Query: 76 SY-IPKKSNPCPVVKTFHYKKGAS-QLFCQPGVTFI-----PSQYEDDELMYNIDKEIIP 128
S I KS ++ + AS + + +F S DEL I +I P
Sbjct: 155 STEIKWKSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWP 214
Query: 129 IAIQ 132
+Q
Sbjct: 215 NPLQ 218
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 28.1 bits (62), Expect = 0.43
Identities = 8/44 (18%), Positives = 14/44 (31%)
Query: 207 CVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFR 250
C I + ++D +I+ S L CP +
Sbjct: 11 CPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54
>d2i0xa1 d.58.58.1 (A:1-84) Hypothetical protein PF1117
{Pyrococcus furiosus [TaxId: 2261]}
Length = 84
Score = 28.1 bits (63), Expect = 0.55
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 11 PPQSNEPYKTLKALINIRKESLRFVKVNDESQRQVYNIE 49
+ + LK +I+ +S+ K+ R+ IE
Sbjct: 39 LAEFERIKEGLKKIIDENSDSVIIYKLRSMPPRETLGIE 77
>d2zfga1 f.4.3.1 (A:1-340) Porin {Escherichia coli, different
sequences [TaxId: 562]}
Length = 340
Score = 29.1 bits (64), Expect = 1.0
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 369 AATSTQLDRSNSVTDTDTEYYKPTSAGAEYYGTKPSSATAEYY 411
+ T+ + D + GA YY K S +Y
Sbjct: 272 SIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYI 314
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 184
Score = 28.5 bits (63), Expect = 1.1
Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 6/120 (5%)
Query: 134 VTTSDDGQEDQKQCHTTIAVVDHHADDSYTLKGLKQKLYVDGL--CYLLQEIYGIENKNN 191
+S + E ++ VD D + L K Y+ L + +Y
Sbjct: 38 TQSSSNLAELRQLLDCDTPSVDLEMIDVHVLADA-FKRYLLDLPNPVIPAAVYSEMISLA 96
Query: 192 EQYKGCEDCEDGGSECVICMCDI---RDTLILPCRHLCLCHSCADSLRYQANNCPICRAP 248
+ + E+ + + TL +H + A +P
Sbjct: 97 PEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSP 156
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 27.3 bits (59), Expect = 1.5
Identities = 9/67 (13%), Positives = 18/67 (26%), Gaps = 4/67 (5%)
Query: 187 ENKNNEQYKGCEDCEDGGSECVICMCDIRDTLILPCRHL----CLCHSCADSLRYQANNC 242
E+ K + + + C H CL + + + C
Sbjct: 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQC 85
Query: 243 PICRAPF 249
P C+ +
Sbjct: 86 PSCKTIY 92
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 26.7 bits (58), Expect = 1.5
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 207 CVICMCDIRDTLILPCRHLCLCHSCADSLRYQANNCPICRAPFR 250
I +R+ I P + L+ + P+ R+P
Sbjct: 10 GKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 53
>d1phoa_ f.4.3.1 (A:) Porin {Escherichia coli, different sequences
[TaxId: 562]}
Length = 330
Score = 28.3 bits (62), Expect = 1.8
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 369 AATSTQLDRSNSVTDTDTEYYKPTSAGAEYYGTKPSSATAEY 410
+ + D + GA YY K SA +Y
Sbjct: 262 SLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAFVDY 303
>d1osma_ f.4.3.1 (A:) Porin {Klebsiella pneumoniae [TaxId: 573]}
Length = 342
Score = 27.9 bits (61), Expect = 2.2
Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 6/110 (5%)
Query: 308 ATTAALNRRASAERSGKGSKVSAPSVTSQTQEGEEKSVSDANVPETPDDDSEAE-----K 362
L AE G K A ++ TQ + + + A + E +
Sbjct: 204 QNQLLLGEGDHAETYTGGLKYDANNIYLATQYTQTYNATRAGSLGFANKAQNFEVAAQYQ 263
Query: 363 LSPLLDAATS-TQLDRSNSVTDTDTEYYKPTSAGAEYYGTKPSSATAEYY 411
L + + Q + D + K GA YY K S +Y
Sbjct: 264 FDFGLRPSVAYLQSKGKDLNGYGDQDILKYVDVGATYYFNKNMSTYVDYK 313
>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 123
Score = 26.2 bits (57), Expect = 4.3
Identities = 4/68 (5%), Positives = 20/68 (29%)
Query: 10 PPPQSNEPYKTLKALINIRKESLRFVKVNDESQRQVYNIEFIFDCDVPCSITVHFFVTED 69
+++P+ +K + + + + + + F I + +
Sbjct: 19 AEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAAE 78
Query: 70 IMGNTISY 77
+ ++
Sbjct: 79 DPMSEVTV 86
>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB
{Neisseria meningitidis [TaxId: 487]}
Length = 260
Score = 26.7 bits (58), Expect = 5.4
Identities = 9/73 (12%), Positives = 18/73 (24%), Gaps = 2/73 (2%)
Query: 10 PPPQSNEPYKTLKALINIRKESLRFVKVNDESQRQVYNIEFIFDCDVPCS--ITVHFFVT 67
++ KA + + V E ++V + V
Sbjct: 154 RGGKAQALLNDAKAHDDAGAAVVLMECVLAELAKKVTETVSCPTIGIGAGADCDGQVLVM 213
Query: 68 EDIMGNTISYIPK 80
D++G K
Sbjct: 214 HDMLGIFPGKTAK 226
>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein
cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}
Length = 220
Score = 26.4 bits (58), Expect = 6.1
Identities = 9/59 (15%), Positives = 21/59 (35%)
Query: 141 QEDQKQCHTTIAVVDHHADDSYTLKGLKQKLYVDGLCYLLQEIYGIENKNNEQYKGCED 199
++ + + VD + S+ K K K+ D Y L+ + + ++
Sbjct: 93 KDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFT 151
>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 160
Score = 25.8 bits (56), Expect = 7.7
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 247 APFRALLQIRALQKNSSH 264
APF +Q RA +
Sbjct: 20 APFMGFIQERAWLREQGK 37
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 326
Score = 26.3 bits (57), Expect = 9.1
Identities = 18/141 (12%), Positives = 36/141 (25%), Gaps = 21/141 (14%)
Query: 141 QEDQKQCHTTIAVVDHHADDSYTLKGLKQKLYVDGLCYLLQEIYGIENKNNEQYKGCEDC 200
E Q + + +VD HA T+ +L + L + + +
Sbjct: 27 VELQHEYNCYFCIVDQHA---ITVWQDPHELRQNIR-RLAALYLAVGIDPTQATLFIQSE 82
Query: 201 EDGGSECVICMCDIRDTLILPCRHLCL-----------------CHSCADSLRYQANNCP 243
++ + I L AD L Y + P
Sbjct: 83 VPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSAGLLTYPPLMAADILLYNTDIVP 142
Query: 244 ICRAPFRALLQIRALQKNSSH 264
+ + + R L + +
Sbjct: 143 VGEDQKQHIELTRDLAERFNK 163
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.392
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,576,975
Number of extensions: 73661
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 38
Length of query: 437
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 349
Effective length of database: 1,199,356
Effective search space: 418575244
Effective search space used: 418575244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 54 (25.1 bits)