Query psy6093
Match_columns 350
No_of_seqs 215 out of 1706
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 17:26:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922|consensus 100.0 4.3E-74 9.3E-79 577.6 22.4 282 10-346 293-579 (674)
2 KOG0924|consensus 100.0 1.5E-73 3.2E-78 570.3 21.4 289 6-349 596-890 (1042)
3 KOG0923|consensus 100.0 6.7E-73 1.4E-77 564.8 20.8 287 7-347 506-796 (902)
4 KOG0920|consensus 100.0 2.5E-69 5.3E-74 566.8 20.2 291 8-347 445-741 (924)
5 KOG0925|consensus 100.0 2.9E-68 6.4E-73 517.4 21.2 281 8-347 287-577 (699)
6 PRK11131 ATP-dependent RNA hel 100.0 2.7E-65 5.8E-70 554.2 26.7 287 8-346 314-609 (1294)
7 TIGR01967 DEAH_box_HrpA ATP-de 100.0 5.9E-63 1.3E-67 537.3 26.7 288 7-346 306-600 (1283)
8 COG1643 HrpA HrpA-like helicas 100.0 1.3E-61 2.7E-66 509.9 22.4 289 7-343 287-589 (845)
9 KOG0926|consensus 100.0 3.1E-61 6.8E-66 488.2 19.1 291 7-341 604-919 (1172)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 5.4E-51 1.2E-55 433.5 16.7 208 7-231 236-446 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 1.5E-48 3.2E-53 415.3 17.2 203 7-226 239-446 (812)
12 KOG0921|consensus 100.0 3.5E-37 7.6E-42 316.1 9.2 289 9-346 676-969 (1282)
13 PHA02653 RNA helicase NPH-II; 100.0 4.4E-33 9.4E-38 290.9 11.2 168 7-212 421-595 (675)
14 PF04408 HA2: Helicase associa 99.8 7.7E-19 1.7E-23 142.6 8.1 92 170-295 1-102 (102)
15 PRK01172 ski2-like helicase; P 99.7 4.7E-18 1E-22 179.7 10.6 182 10-213 288-493 (674)
16 PRK02362 ski2-like helicase; P 99.7 6.3E-16 1.4E-20 165.1 20.3 186 10-213 306-515 (737)
17 smart00847 HA2 Helicase associ 99.7 2.9E-17 6.3E-22 130.3 6.6 91 170-295 1-92 (92)
18 PRK00254 ski2-like helicase; P 99.6 2.4E-14 5.3E-19 152.6 19.0 185 9-212 297-505 (720)
19 KOG0921|consensus 99.4 5.8E-14 1.3E-18 146.1 0.1 282 10-344 685-970 (1282)
20 PRK11776 ATP-dependent RNA hel 99.2 1.3E-11 2.8E-16 125.1 5.9 81 7-105 266-350 (460)
21 PRK11057 ATP-dependent DNA hel 99.2 1.5E-11 3.2E-16 129.0 6.5 82 7-106 260-345 (607)
22 TIGR00614 recQ_fam ATP-depende 99.2 1.6E-11 3.4E-16 125.0 6.5 82 7-106 250-335 (470)
23 PF00271 Helicase_C: Helicase 99.2 3.1E-11 6.7E-16 92.2 6.2 70 6-93 6-78 (78)
24 PTZ00424 helicase 45; Provisio 99.2 1.4E-11 3E-16 122.2 5.2 82 7-106 291-376 (401)
25 PTZ00110 helicase; Provisional 99.2 2.2E-11 4.8E-16 126.1 6.9 82 6-105 400-485 (545)
26 PLN00206 DEAD-box ATP-dependen 99.2 2.1E-11 4.6E-16 125.5 5.7 81 7-105 392-476 (518)
27 PRK04837 ATP-dependent RNA hel 99.2 1.5E-11 3.3E-16 123.3 4.4 81 7-105 279-363 (423)
28 KOG0331|consensus 99.2 2E-11 4.3E-16 123.5 4.7 83 7-107 365-451 (519)
29 PRK01297 ATP-dependent RNA hel 99.2 5.2E-11 1.1E-15 121.3 7.1 80 7-104 359-442 (475)
30 PLN03137 ATP-dependent DNA hel 99.1 4.5E-11 9.8E-16 129.9 6.9 82 7-106 704-789 (1195)
31 COG1204 Superfamily II helicas 99.1 2.4E-10 5.3E-15 121.9 9.3 186 13-212 320-526 (766)
32 TIGR01389 recQ ATP-dependent D 99.1 1.6E-10 3.6E-15 120.7 7.0 82 7-106 248-333 (591)
33 PRK11192 ATP-dependent RNA hel 99.1 1.9E-10 4.2E-15 115.6 6.5 82 7-106 269-354 (434)
34 PRK04537 ATP-dependent RNA hel 99.1 1.4E-10 3E-15 120.8 5.4 81 7-105 281-365 (572)
35 TIGR00643 recG ATP-dependent D 99.0 2.3E-10 5.1E-15 120.4 6.8 81 5-102 480-564 (630)
36 COG1202 Superfamily II helicas 99.0 1.6E-10 3.6E-15 116.4 5.1 195 7-232 464-684 (830)
37 PRK10590 ATP-dependent RNA hel 99.0 2.2E-10 4.7E-15 116.2 6.0 81 7-105 269-353 (456)
38 smart00490 HELICc helicase sup 99.0 5.6E-10 1.2E-14 84.6 5.9 69 7-93 11-82 (82)
39 TIGR03817 DECH_helic helicase/ 99.0 1.9E-10 4.1E-15 123.1 4.4 79 7-103 303-385 (742)
40 PRK10917 ATP-dependent DNA hel 99.0 6.8E-10 1.5E-14 117.9 6.7 79 7-102 505-587 (681)
41 PRK11634 ATP-dependent RNA hel 99.0 7E-10 1.5E-14 116.7 6.4 80 7-104 269-352 (629)
42 KOG0333|consensus 98.9 1.3E-09 2.8E-14 109.0 4.7 81 7-105 541-625 (673)
43 TIGR00580 mfd transcription-re 98.9 3.1E-09 6.7E-14 115.7 7.5 82 6-104 685-770 (926)
44 COG0513 SrmB Superfamily II DN 98.9 2.4E-09 5.1E-14 110.3 6.2 80 7-104 297-380 (513)
45 KOG0330|consensus 98.8 3.7E-09 7.9E-14 102.6 5.9 79 7-103 324-406 (476)
46 PRK10689 transcription-repair 98.8 3.2E-09 7E-14 117.8 5.8 81 6-103 834-918 (1147)
47 COG1111 MPH1 ERCC4-like helica 98.8 9.9E-09 2.2E-13 102.6 7.0 72 15-104 407-481 (542)
48 PRK13767 ATP-dependent helicas 98.8 4.3E-08 9.2E-13 107.0 11.6 75 8-100 315-396 (876)
49 cd00079 HELICc Helicase superf 98.7 2.7E-08 5.9E-13 82.0 5.9 75 7-99 52-130 (131)
50 TIGR01587 cas3_core CRISPR-ass 98.7 3.1E-08 6.8E-13 96.9 7.2 75 9-104 250-336 (358)
51 PRK09751 putative ATP-dependen 98.7 3.4E-08 7.4E-13 111.2 8.1 69 10-96 304-375 (1490)
52 COG0514 RecQ Superfamily II DN 98.7 3.3E-08 7.2E-13 102.0 7.0 81 7-105 254-338 (590)
53 KOG0336|consensus 98.7 1.6E-08 3.4E-13 98.8 4.1 84 5-106 487-574 (629)
54 KOG0328|consensus 98.6 4.5E-08 9.7E-13 91.8 5.4 81 7-105 290-374 (400)
55 KOG0335|consensus 98.5 7.4E-08 1.6E-12 96.6 4.9 79 7-103 361-443 (482)
56 KOG0345|consensus 98.5 5.6E-08 1.2E-12 96.4 4.0 99 7-123 281-386 (567)
57 KOG0348|consensus 98.5 1.5E-07 3.2E-12 94.7 6.1 106 5-128 469-580 (708)
58 TIGR00631 uvrb excinuclease AB 98.5 2.3E-07 4.9E-12 98.1 7.4 85 7-104 466-553 (655)
59 KOG0332|consensus 98.5 2.7E-07 5.9E-12 89.4 7.0 86 7-104 354-443 (477)
60 PRK13766 Hef nuclease; Provisi 98.5 2.2E-07 4.7E-12 100.2 7.1 72 15-104 405-479 (773)
61 TIGR02621 cas3_GSU0051 CRISPR- 98.5 3.1E-07 6.7E-12 98.5 7.7 108 11-141 298-428 (844)
62 PRK05298 excinuclease ABC subu 98.4 4.1E-07 8.8E-12 96.4 7.6 84 7-103 470-556 (652)
63 KOG0354|consensus 98.4 2.3E-07 4.9E-12 97.4 5.4 71 15-104 456-529 (746)
64 PRK12898 secA preprotein trans 98.4 3.9E-07 8.4E-12 95.6 6.5 80 7-104 497-586 (656)
65 KOG0338|consensus 98.4 3.4E-07 7.3E-12 91.8 4.8 81 7-105 450-534 (691)
66 KOG0340|consensus 98.4 3.7E-07 8.1E-12 88.0 4.9 79 7-103 278-360 (442)
67 PRK09200 preprotein translocas 98.4 6.2E-07 1.3E-11 95.9 7.0 80 7-104 452-541 (790)
68 PHA02558 uvsW UvsW helicase; P 98.4 4.3E-07 9.4E-12 93.4 5.3 72 7-96 368-443 (501)
69 KOG0342|consensus 98.3 6.9E-07 1.5E-11 89.1 6.2 79 8-104 355-437 (543)
70 COG1200 RecG RecG-like helicas 98.3 7E-07 1.5E-11 92.6 6.5 85 3-104 503-591 (677)
71 KOG0951|consensus 98.3 5E-06 1.1E-10 90.6 11.4 184 13-205 613-824 (1674)
72 KOG0344|consensus 98.3 1.2E-06 2.7E-11 89.0 6.0 83 5-105 410-496 (593)
73 TIGR03714 secA2 accessory Sec 98.2 1.6E-06 3.6E-11 92.1 6.8 79 7-104 448-537 (762)
74 KOG0339|consensus 98.2 1E-06 2.3E-11 88.3 3.8 83 5-105 490-576 (731)
75 KOG0341|consensus 98.2 7.9E-07 1.7E-11 86.6 2.8 81 6-104 444-528 (610)
76 TIGR00603 rad25 DNA repair hel 98.2 2.4E-06 5.3E-11 90.7 6.4 76 12-104 520-607 (732)
77 KOG0351|consensus 98.0 4.9E-06 1.1E-10 90.5 5.5 84 7-108 509-596 (941)
78 PRK04914 ATP-dependent helicas 98.0 8.4E-06 1.8E-10 89.2 7.1 80 7-104 518-605 (956)
79 KOG0326|consensus 98.0 3.6E-06 7.8E-11 80.4 2.2 81 7-105 346-430 (459)
80 KOG0343|consensus 97.9 8.5E-06 1.8E-10 82.6 4.8 81 7-105 339-423 (758)
81 PRK12906 secA preprotein trans 97.9 1.3E-05 2.9E-10 85.6 6.4 80 7-104 464-553 (796)
82 KOG0350|consensus 97.9 6.5E-06 1.4E-10 82.5 3.5 81 7-105 457-541 (620)
83 TIGR03158 cas3_cyano CRISPR-as 97.9 1.2E-05 2.6E-10 79.2 5.3 59 8-90 299-357 (357)
84 KOG0347|consensus 97.9 1.5E-05 3.1E-10 80.9 4.6 75 12-104 492-570 (731)
85 PRK09694 helicase Cas3; Provis 97.8 1.9E-05 4.1E-10 85.9 5.6 65 8-93 588-663 (878)
86 TIGR00963 secA preprotein tran 97.8 3E-05 6.5E-10 82.3 6.8 78 7-104 429-517 (745)
87 KOG0948|consensus 97.8 7.4E-06 1.6E-10 85.5 1.6 83 13-105 452-540 (1041)
88 COG1197 Mfd Transcription-repa 97.8 3.5E-05 7.7E-10 84.4 6.5 75 13-104 835-913 (1139)
89 KOG0950|consensus 97.8 2.9E-05 6.3E-10 83.0 5.4 83 9-105 524-612 (1008)
90 TIGR00595 priA primosomal prot 97.8 2.7E-05 5.9E-10 80.2 4.9 88 4-99 281-376 (505)
91 KOG0352|consensus 97.7 2.4E-05 5.2E-10 77.3 4.1 84 6-107 278-365 (641)
92 KOG0947|consensus 97.7 4E-05 8.7E-10 81.9 5.7 82 13-104 636-723 (1248)
93 KOG0952|consensus 97.7 0.00033 7.1E-09 75.8 12.2 195 13-222 402-634 (1230)
94 KOG0349|consensus 97.7 4.3E-05 9.3E-10 75.7 5.1 77 7-101 532-612 (725)
95 COG1205 Distinct helicase fami 97.7 2.4E-05 5.2E-10 85.1 3.7 72 8-96 339-414 (851)
96 PRK05580 primosome assembly pr 97.7 4.5E-05 9.8E-10 81.3 5.4 88 4-99 449-544 (679)
97 COG1201 Lhr Lhr-like helicases 97.7 7.3E-05 1.6E-09 80.2 6.9 142 9-177 280-438 (814)
98 COG4098 comFA Superfamily II D 97.7 6E-05 1.3E-09 72.8 5.1 66 12-93 336-402 (441)
99 KOG0327|consensus 97.6 5.3E-05 1.1E-09 73.9 4.3 83 7-107 287-373 (397)
100 PRK12900 secA preprotein trans 97.5 9.2E-05 2E-09 80.3 5.2 79 7-105 622-712 (1025)
101 KOG4150|consensus 97.3 0.00019 4.1E-09 73.3 4.2 65 11-93 561-628 (1034)
102 KOG0334|consensus 97.3 0.00021 4.6E-09 77.2 4.4 79 7-103 637-719 (997)
103 KOG0953|consensus 97.3 0.00048 1E-08 70.3 6.6 83 11-103 385-476 (700)
104 COG4581 Superfamily II RNA hel 97.1 0.00067 1.5E-08 74.4 5.7 81 13-103 450-536 (1041)
105 KOG4284|consensus 97.1 0.00089 1.9E-08 69.5 5.8 79 7-103 296-378 (980)
106 KOG0949|consensus 96.8 0.0013 2.9E-08 70.9 5.1 91 13-120 968-1065(1330)
107 COG1203 CRISPR-associated heli 96.6 0.0016 3.4E-08 70.3 4.0 70 9-99 466-545 (733)
108 PRK14701 reverse gyrase; Provi 96.6 0.0011 2.3E-08 76.7 2.1 91 6-104 356-456 (1638)
109 KOG0353|consensus 96.5 0.0026 5.7E-08 62.3 4.3 53 7-59 341-396 (695)
110 PRK13107 preprotein translocas 96.4 0.0044 9.5E-08 67.2 5.5 39 7-47 473-514 (908)
111 PRK13104 secA preprotein trans 96.3 0.0048 1E-07 67.0 5.3 91 7-99 468-582 (896)
112 TIGR01054 rgy reverse gyrase. 96.1 0.0064 1.4E-07 68.6 5.2 55 7-62 353-412 (1171)
113 PRK09401 reverse gyrase; Revie 95.9 0.0086 1.9E-07 67.6 4.7 53 6-60 354-411 (1176)
114 PRK11448 hsdR type I restricti 95.8 0.024 5.2E-07 63.8 7.8 100 11-128 735-844 (1123)
115 COG1061 SSL2 DNA or RNA helica 95.1 0.028 6.1E-07 57.1 5.1 68 10-95 309-379 (442)
116 PRK12904 preprotein translocas 95.1 0.036 7.7E-07 60.2 5.8 94 7-102 454-571 (830)
117 PLN03142 Probable chromatin-re 93.8 0.13 2.8E-06 57.3 6.7 82 6-105 510-600 (1033)
118 KOG0337|consensus 93.3 0.094 2E-06 52.4 4.1 79 7-104 285-368 (529)
119 PRK12903 secA preprotein trans 91.4 0.16 3.4E-06 55.3 3.4 49 31-97 475-532 (925)
120 TIGR02562 cas3_yersinia CRISPR 90.4 0.25 5.4E-06 54.8 3.7 46 29-95 837-882 (1110)
121 KOG0329|consensus 89.7 0.13 2.7E-06 48.5 0.7 53 34-104 302-355 (387)
122 KOG0385|consensus 88.8 1.1 2.3E-05 48.2 6.7 86 5-105 509-600 (971)
123 PRK12326 preprotein translocas 88.7 0.34 7.4E-06 51.9 3.1 54 31-102 476-545 (764)
124 PRK12901 secA preprotein trans 87.8 0.48 1E-05 52.5 3.6 49 32-98 678-735 (1112)
125 KOG0346|consensus 87.4 0.52 1.1E-05 47.6 3.2 77 9-103 294-409 (569)
126 PRK13103 secA preprotein trans 86.2 0.59 1.3E-05 51.3 3.2 17 31-47 498-514 (913)
127 COG0556 UvrB Helicase subunit 83.7 1.7 3.7E-05 45.0 5.0 80 7-99 470-552 (663)
128 PRK12899 secA preprotein trans 82.9 0.95 2.1E-05 49.9 3.0 61 31-102 617-679 (970)
129 KOG0391|consensus 80.2 4.3 9.2E-05 45.9 6.7 86 5-105 1298-1388(1958)
130 CHL00122 secA preprotein trans 77.3 1.9 4.1E-05 47.2 3.0 22 77-98 603-625 (870)
131 KOG1123|consensus 73.1 3.6 7.8E-05 42.5 3.5 63 14-93 569-635 (776)
132 COG1198 PriA Primosomal protei 72.1 5.4 0.00012 43.2 4.8 64 26-99 530-598 (730)
133 COG4096 HsdR Type I site-speci 68.7 11 0.00023 41.2 6.1 89 28-134 479-578 (875)
134 KOG0392|consensus 68.1 7 0.00015 44.3 4.6 79 12-105 1372-1455(1549)
135 KOG0390|consensus 64.1 20 0.00044 39.1 7.1 84 6-104 618-707 (776)
136 KOG0384|consensus 63.5 8.6 0.00019 43.5 4.3 105 7-129 723-834 (1373)
137 KOG0389|consensus 63.3 14 0.00031 40.1 5.7 82 7-105 801-889 (941)
138 PF13871 Helicase_C_4: Helicas 51.3 64 0.0014 30.9 7.5 60 24-93 55-114 (278)
139 TIGR02647 DNA conserved hypoth 50.4 14 0.00031 28.2 2.3 31 166-196 34-66 (77)
140 KOG0388|consensus 41.5 63 0.0014 35.2 6.2 85 6-105 1067-1155(1185)
141 COG0653 SecA Preprotein transl 39.7 17 0.00036 39.9 1.8 48 32-97 479-538 (822)
142 COG0553 HepA Superfamily II DN 37.7 59 0.0013 35.3 5.6 83 8-105 736-823 (866)
143 KOG3120|consensus 36.5 13 0.00029 34.5 0.3 84 166-262 57-140 (256)
144 PRK05580 primosome assembly pr 34.5 42 0.00091 36.2 3.8 45 8-53 216-263 (679)
145 PRK10917 ATP-dependent DNA hel 33.6 41 0.0009 36.2 3.6 47 7-53 338-388 (681)
146 TIGR00348 hsdR type I site-spe 31.0 63 0.0014 34.7 4.5 51 26-96 586-639 (667)
147 PF03288 Pox_D5: Poxvirus D5 p 29.9 1.1E+02 0.0023 23.2 4.5 42 288-340 18-59 (86)
148 TIGR01407 dinG_rel DnaQ family 29.4 1.4E+02 0.003 33.1 6.9 76 24-99 719-810 (850)
149 PRK12902 secA preprotein trans 28.9 32 0.00069 38.2 1.7 15 83-97 666-681 (939)
150 PF03682 UPF0158: Uncharacteri 28.8 44 0.00096 29.3 2.4 37 289-325 109-145 (163)
151 PF14338 Mrr_N: Mrr N-terminal 28.4 47 0.001 25.8 2.2 33 163-195 52-88 (92)
152 PF10264 Stork_head: Winged he 27.6 1.9E+02 0.004 22.5 5.3 63 113-183 3-69 (80)
153 TIGR00595 priA primosomal prot 26.0 63 0.0014 33.5 3.3 44 9-53 52-98 (505)
154 PRK05255 hypothetical protein; 26.0 74 0.0016 28.2 3.3 50 159-213 13-63 (171)
155 PRK14873 primosome assembly pr 25.7 56 0.0012 35.2 2.9 44 9-53 216-262 (665)
156 KOG0339|consensus 24.8 64 0.0014 33.7 2.9 46 7-53 324-375 (731)
157 PRK14873 primosome assembly pr 24.1 1.2E+02 0.0026 32.8 5.0 62 29-101 470-536 (665)
158 PF01638 HxlR: HxlR-like helix 24.1 47 0.001 25.7 1.5 36 160-195 28-73 (90)
159 PF14947 HTH_45: Winged helix- 23.6 43 0.00094 25.2 1.2 32 164-195 32-66 (77)
160 COG4889 Predicted helicase [Ge 23.6 80 0.0017 35.3 3.5 76 5-98 495-578 (1518)
161 PF13463 HTH_27: Winged helix 22.6 78 0.0017 22.5 2.4 28 164-191 31-68 (68)
162 COG4742 Predicted transcriptio 21.1 75 0.0016 30.2 2.5 30 166-195 41-73 (260)
163 KOG0387|consensus 20.5 2.4E+02 0.0051 31.2 6.2 84 7-105 571-659 (923)
164 COG1733 Predicted transcriptio 20.4 52 0.0011 27.3 1.1 38 158-195 44-91 (120)
165 TIGR03433 padR_acidobact trans 20.4 1.1E+02 0.0024 24.1 3.0 34 162-195 36-81 (100)
166 PF01090 Ribosomal_S19e: Ribos 20.1 51 0.0011 28.2 1.1 32 164-195 93-128 (139)
No 1
>KOG0922|consensus
Probab=100.00 E-value=4.3e-74 Score=577.64 Aligned_cols=282 Identities=34% Similarity=0.595 Sum_probs=270.6
Q ss_pred eeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhh
Q psy6093 10 LQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRR 86 (350)
Q Consensus 10 ~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 86 (350)
+.++||+||.++|.+||. +|.||||+||||||||+|||||+||||+|++|++.|||+.|++.|..+||||++|.||+
T Consensus 293 ~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRa 372 (674)
T KOG0922|consen 293 ILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRA 372 (674)
T ss_pred eeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhc
Confidence 456799999999999998 59999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceEEEcccccccccccCCCCccccccchHHHHHHHhhccCccchhhHhhhhccccCCccccCccCCCCCCHH
Q psy6093 87 GRAGRVQEGVCYHLYSRAREQTFQDYPLPEIQRTRLDEVVRTLESKKFKMVSRRFKVMLNTAFTPYVWVPKQVLDPPDPA 166 (350)
Q Consensus 87 GRaGR~~~G~c~rLyt~~~~~~~~~~~~pEi~r~~L~~~~L~~k~~~~~~~~~~f~~~l~~~~~p~~~~l~~~~~pP~~~ 166 (350)
|||||++||+|||||++++|+.|++.+.|||+|.+|..++|++|++|++++ ..| +|+|||+++
T Consensus 373 GRAGRt~pGkcyRLYte~~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~-l~F----------------~f~d~P~~~ 435 (674)
T KOG0922|consen 373 GRAGRTGPGKCYRLYTESAYDKMPLQTVPEIQRVNLSSAVLQLKALGINDP-LRF----------------PFIDPPPPE 435 (674)
T ss_pred ccCCCCCCceEEEeeeHHHHhhcccCCCCceeeechHHHHHHHHhcCCCCc-ccC----------------CCCCCCChH
Confidence 999999999999999999999999999999999999999999999999999 889 999999999
Q ss_pred HHHHHHHHHHHHHccCCCCCCCH-HHhhhccCCCchhHHHHHHHhhhcCChhHHHHHhhhccccccccccccchhhhhhh
Q psy6093 167 SVQLSLKLLRLIDALDDDEHLTP-LGYHLAKLPLDPQIGKMLLMASIFSCVDPVFTVAASLGFKDAFYCPMIGKMLLMAS 245 (350)
Q Consensus 167 ~i~~al~~L~~lgald~~~~LT~-lG~~ls~Lpldp~~ak~ll~~~~~~C~~~~l~iaa~l~~~~~~~~~~~g~~~~~~~ 245 (350)
++..|++.|..+||||++|.||. +|+.|+.||++|.++||++.+..+||.+++++|
T Consensus 436 ~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i----------------------- 492 (674)
T KOG0922|consen 436 ALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTI----------------------- 492 (674)
T ss_pred HHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhh-----------------------
Confidence 99999999999999999999998 999999999999999999999999999999999
Q ss_pred hcccCCccchhcccccCCCccccCCCchHH-HHHHHHHhccCCCChHHHHHHHHHHHHHHHccChhHHHHHHccCCHHHH
Q psy6093 246 IFSCVDPVFTVAASLGFKDAFYCPMNMEKD-VDKQKNILAQGAKSDYVVLINAMQGWEQALEHNYAHDYCRENFLTNNTL 324 (350)
Q Consensus 246 i~s~~~~~~~~aa~ls~~~~f~~p~~~~~~-~~~~r~~f~~~~~sDhltll~~f~~w~~~~~~~~~~~~C~~~~L~~~~l 324 (350)
+|+||++++|+.|.+.+.+ ++..|.+|.. ..|||+|++|+|+.|.+ ++..++||++|++|.+.|
T Consensus 493 -----------~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~~-~eGDh~tlL~vy~~~~~---~~~~~~wC~en~i~~r~l 557 (674)
T KOG0922|consen 493 -----------AAMLSVQSVFSRPKDKKAEDADRKRAKFAN-PEGDHLTLLNVYESWKE---NGTSKKWCKENFINARSL 557 (674)
T ss_pred -----------eeeeeccceecCccchhhhhhhHHHHhhcC-cccCHHHHHHHHHHHHh---cCChhhHHHHhcccHHHH
Confidence 7888999999999988776 8889999986 68899999999999985 677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCcC
Q psy6093 325 LLLRDMKDQFSRTMHEMNFISS 346 (350)
Q Consensus 325 ~~~~~lr~ql~~~l~~~~~~~~ 346 (350)
+.+.++|+||.+++.+.++..+
T Consensus 558 ~~a~~ir~QL~~i~~~~~~~~~ 579 (674)
T KOG0922|consen 558 KRAKDIRKQLRRILDKFGLPVS 579 (674)
T ss_pred HHHHHHHHHHHHHHHHcCCCcc
Confidence 9999999999999988887763
No 2
>KOG0924|consensus
Probab=100.00 E-value=1.5e-73 Score=570.35 Aligned_cols=289 Identities=34% Similarity=0.565 Sum_probs=275.5
Q ss_pred cceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhH
Q psy6093 6 QIWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANA 82 (350)
Q Consensus 6 ~~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~ 82 (350)
....|.++||+||.+.|.++|+ .|.|||||||||||||+|||||.||||||++|.++||++.|+..|...|||||+|
T Consensus 596 ~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA 675 (1042)
T KOG0924|consen 596 TDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANA 675 (1042)
T ss_pred CceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccc
Confidence 3678889999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCCceEEEccccccc-ccccCCCCccccccchHHHHHHHhhccCccchhhHhhhhccccCCccccCccCCC
Q psy6093 83 KQRRGRAGRVQEGVCYHLYSRARE-QTFQDYPLPEIQRTRLDEVVRTLESKKFKMVSRRFKVMLNTAFTPYVWVPKQVLD 161 (350)
Q Consensus 83 ~QR~GRaGR~~~G~c~rLyt~~~~-~~~~~~~~pEi~r~~L~~~~L~~k~~~~~~~~~~f~~~l~~~~~p~~~~l~~~~~ 161 (350)
.||+|||||++||.||||||+..| +.|-+.+.|||+|++|.+++|.+|++|++++ ..| +|+|
T Consensus 676 ~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dl-l~F----------------dFmD 738 (1042)
T KOG0924|consen 676 DQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDL-LKF----------------DFMD 738 (1042)
T ss_pred hhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhh-hCC----------------CcCC
Confidence 999999999999999999999665 6799999999999999999999999999999 889 9999
Q ss_pred CCCHHHHHHHHHHHHHHHccCCCCCCCHHHhhhccCCCchhHHHHHHHhhhcCChhHHHHHhhhccccccccccccchhh
Q psy6093 162 PPDPASVQLSLKLLRLIDALDDDEHLTPLGYHLAKLPLDPQIGKMLLMASIFSCVDPVFTVAASLGFKDAFYCPMIGKML 241 (350)
Q Consensus 162 pP~~~~i~~al~~L~~lgald~~~~LT~lG~~ls~Lpldp~~ak~ll~~~~~~C~~~~l~iaa~l~~~~~~~~~~~g~~~ 241 (350)
||+.+.+..|+..|..+|||++.|.||++|+.|++||+||.++|||+.|+.+||.+|+++|
T Consensus 739 ~Pped~~~~sly~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsI------------------- 799 (1042)
T KOG0924|consen 739 PPPEDNLLNSLYQLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSI------------------- 799 (1042)
T ss_pred CCHHHHHHHHHHHHHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHH-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCccchhcccccCCCccccCCCchHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHccChhHHHHHHccCCH
Q psy6093 242 LMASIFSCVDPVFTVAASLGFKDAFYCPMNMEKDVDKQKNILAQGAKSDYVVLINAMQGWEQALEHNYAHDYCRENFLTN 321 (350)
Q Consensus 242 ~~~~i~s~~~~~~~~aa~ls~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~~f~~w~~~~~~~~~~~~C~~~~L~~ 321 (350)
+++||+...|+.|.+.+++++.+|.+|.. +.|||||+||+|++|.+ +++...||.+|+|+.
T Consensus 800 ---------------vSmLSvp~VF~rpker~eead~ar~Kf~~-~~sDhLTlLNVf~qw~~---~~~~~~WCnd~~l~~ 860 (1042)
T KOG0924|consen 800 ---------------VSMLSVPAVFYRPKEREEEADAAREKFQV-PESDHLTLLNVFNQWRK---NKYSSMWCNDHYLQV 860 (1042)
T ss_pred ---------------HHHhcccceeeccccchhhhhhHHhhhcC-CCCchhhHHHHHHHHHh---cCCchhhhhhhhhhH
Confidence 88899999999999999999999999986 78999999999999984 567889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCc--CCCC
Q psy6093 322 NTLLLLRDMKDQFSRTMHEMNFIS--SRTW 349 (350)
Q Consensus 322 ~~l~~~~~lr~ql~~~l~~~~~~~--~~~~ 349 (350)
++|+.++++|+||+++|++.++.- +++|
T Consensus 861 kaL~~arevR~ql~~il~~l~~~l~S~~dw 890 (1042)
T KOG0924|consen 861 KALKKAREVRRQLLEILKQLKLPLISSDDW 890 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCchH
Confidence 999999999999999999987654 4444
No 3
>KOG0923|consensus
Probab=100.00 E-value=6.7e-73 Score=564.83 Aligned_cols=287 Identities=33% Similarity=0.556 Sum_probs=268.2
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
-..++++||+||.+.|++||+ +|.||||+||||||||+|||||.||||+|++|++.|||++||++|..+|||||+|.
T Consensus 506 eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~ 585 (902)
T KOG0923|consen 506 ELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASAN 585 (902)
T ss_pred eEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhh
Confidence 356788899999999999999 78999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCceEEEccccccc-ccccCCCCccccccchHHHHHHHhhccCccchhhHhhhhccccCCccccCccCCCC
Q psy6093 84 QRRGRAGRVQEGVCYHLYSRARE-QTFQDYPLPEIQRTRLDEVVRTLESKKFKMVSRRFKVMLNTAFTPYVWVPKQVLDP 162 (350)
Q Consensus 84 QR~GRaGR~~~G~c~rLyt~~~~-~~~~~~~~pEi~r~~L~~~~L~~k~~~~~~~~~~f~~~l~~~~~p~~~~l~~~~~p 162 (350)
||+|||||++||+||||||...| +.+.+.+.|||+|++|.+++|.+|+||+.++ .+| +|+||
T Consensus 586 QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl-~~F----------------dFmDp 648 (902)
T KOG0923|consen 586 QRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDL-IHF----------------DFLDP 648 (902)
T ss_pred hhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchh-ccc----------------ccCCC
Confidence 99999999999999999998776 5688899999999999999999999999999 999 99999
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCHHHhhhccCCCchhHHHHHHHhhhcCChhHHHHHhhhccccccccccccchhhh
Q psy6093 163 PDPASVQLSLKLLRLIDALDDDEHLTPLGYHLAKLPLDPQIGKMLLMASIFSCVDPVFTVAASLGFKDAFYCPMIGKMLL 242 (350)
Q Consensus 163 P~~~~i~~al~~L~~lgald~~~~LT~lG~~ls~Lpldp~~ak~ll~~~~~~C~~~~l~iaa~l~~~~~~~~~~~g~~~~ 242 (350)
|+.+++..|++.|+.+|||+..|+||.+|+.|++||+||+++|||+.+-..+|.+++++|||+|+.+
T Consensus 649 Pp~etL~~aLE~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~------------- 715 (902)
T KOG0923|consen 649 PPTETLLKALEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVG------------- 715 (902)
T ss_pred CChHHHHHHHHHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcC-------------
Confidence 9999999999999999999999999999999999999999999999999999999999995554322
Q ss_pred hhhhcccCCccchhcccccCCCccccCCCchHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHccChhHHHHHHccCCHH
Q psy6093 243 MASIFSCVDPVFTVAASLGFKDAFYCPMNMEKDVDKQKNILAQGAKSDYVVLINAMQGWEQALEHNYAHDYCRENFLTNN 322 (350)
Q Consensus 243 ~~~i~s~~~~~~~~aa~ls~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~~f~~w~~~~~~~~~~~~C~~~~L~~~ 322 (350)
.++|+.|.++...++++++.|.. +.|||++++++|+.|.+ .+++.+||.+|++.++
T Consensus 716 --------------------~svfyrpk~~~v~ad~a~~~f~~-~~gDhi~~L~vyn~w~e---s~~s~~wC~e~~iq~~ 771 (902)
T KOG0923|consen 716 --------------------ASVFYRPKDKQVHADNARKNFEE-PVGDHIVLLNVYNQWKE---SKYSTQWCYENFIQYR 771 (902)
T ss_pred --------------------chheecchhhhhhhhhhhhccCC-CCcchhhhhHHHHHHhh---cchhhHHHHHhhhhHH
Confidence 35799999888888999999976 58999999999999984 5778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCcCC
Q psy6093 323 TLLLLRDMKDQFSRTMHEMNFISSR 347 (350)
Q Consensus 323 ~l~~~~~lr~ql~~~l~~~~~~~~~ 347 (350)
+|+++.++|+||..++.+.+.-..+
T Consensus 772 sm~rardir~qL~gll~~v~~~~~s 796 (902)
T KOG0923|consen 772 SMKRARDIRDQLEGLLERVEIDLSS 796 (902)
T ss_pred HHHHHHHHHHHHHHHhhhccccccC
Confidence 9999999999999999988776554
No 4
>KOG0920|consensus
Probab=100.00 E-value=2.5e-69 Score=566.80 Aligned_cols=291 Identities=43% Similarity=0.762 Sum_probs=279.7
Q ss_pred eeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHh
Q psy6093 8 WFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQ 84 (350)
Q Consensus 8 ~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~Q 84 (350)
+.+.++||.|+.++|+.||. +|.||||+||||||||||||||.||||||+.|++.||+..+++.+...|+|||+|+|
T Consensus 445 ~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~Q 524 (924)
T KOG0920|consen 445 FAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQ 524 (924)
T ss_pred eEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHH
Confidence 77888899999999999998 788999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCceEEEcccccccccccC-CCCccccccchHHHHHHHhhccCccchhhHhhhhccccCCccccCccCCCCC
Q psy6093 85 RRGRAGRVQEGVCYHLYSRAREQTFQD-YPLPEIQRTRLDEVVRTLESKKFKMVSRRFKVMLNTAFTPYVWVPKQVLDPP 163 (350)
Q Consensus 85 R~GRaGR~~~G~c~rLyt~~~~~~~~~-~~~pEi~r~~L~~~~L~~k~~~~~~~~~~f~~~l~~~~~p~~~~l~~~~~pP 163 (350)
|+|||||+++|+|||||++..|+.+.. ++.|||+|.||+++||++|.++.+.+ ..| |+.+++||
T Consensus 525 R~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~-~~f--------------LskaldpP 589 (924)
T KOG0920|consen 525 RRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSI-KAF--------------LSKALDPP 589 (924)
T ss_pred hcccccCccCCeeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCH-HHH--------------HHHhcCCC
Confidence 999999999999999999999988777 99999999999999999999999999 788 78999999
Q ss_pred CHHHHHHHHHHHHHHHccCCCCCCCHHHhhhccCCCchhHHHHHHHhhhcCChhHHHHHhhhccccccccccccchhhhh
Q psy6093 164 DPASVQLSLKLLRLIDALDDDEHLTPLGYHLAKLPLDPQIGKMLLMASIFSCVDPVFTVAASLGFKDAFYCPMIGKMLLM 243 (350)
Q Consensus 164 ~~~~i~~al~~L~~lgald~~~~LT~lG~~ls~Lpldp~~ak~ll~~~~~~C~~~~l~iaa~l~~~~~~~~~~~g~~~~~ 243 (350)
+..++..|+..|..+||++.+++||++|++++.||+||++|||++.|+.|+|++|+++|
T Consensus 590 ~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~if~cLdp~l~i--------------------- 648 (924)
T KOG0920|consen 590 PADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIFGCLDPALTI--------------------- 648 (924)
T ss_pred ChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCccccchhheehhhccccchhhhH---------------------
Confidence 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCccchhcccccCCCccccCCCchHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHcc--ChhHHHHHHccCCH
Q psy6093 244 ASIFSCVDPVFTVAASLGFKDAFYCPMNMEKDVDKQKNILAQGAKSDYVVLINAMQGWEQALEH--NYAHDYCRENFLTN 321 (350)
Q Consensus 244 ~~i~s~~~~~~~~aa~ls~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~~f~~w~~~~~~--~~~~~~C~~~~L~~ 321 (350)
||+|+.++||+.|.++++.+++.++.|+.+..|||+|++++|..|++.... ....+||++|||+.
T Consensus 649 -------------aa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~ 715 (924)
T KOG0920|consen 649 -------------AAALSFKSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWREILRSGPSAEKDFCEENFLSS 715 (924)
T ss_pred -------------HHHhccCCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHhhccH
Confidence 777889999999999999999999999877789999999999999998776 47889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCcCC
Q psy6093 322 NTLLLLRDMKDQFSRTMHEMNFISSR 347 (350)
Q Consensus 322 ~~l~~~~~lr~ql~~~l~~~~~~~~~ 347 (350)
.+|++++++|.||.+.+.++||++.+
T Consensus 716 ~~l~~i~~l~~q~~~~l~~~g~~~~~ 741 (924)
T KOG0920|consen 716 NTLQEISSLRVQFLELLSDIGLIPIS 741 (924)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccCC
Confidence 99999999999999999999999875
No 5
>KOG0925|consensus
Probab=100.00 E-value=2.9e-68 Score=517.35 Aligned_cols=281 Identities=33% Similarity=0.551 Sum_probs=264.8
Q ss_pred eeeeccCCCCCHHHHHHhcc--------CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccH
Q psy6093 8 WFLQCPSSGLKHLQNKSVFE--------LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISL 79 (350)
Q Consensus 8 ~~~~~lHs~l~~~~q~~vf~--------~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSk 79 (350)
..|++|| |.+|+++|+ ...|||||+|||||+|+||++|.||||.|+.|+++|||+.+.+++...||||
T Consensus 287 l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISk 362 (699)
T KOG0925|consen 287 LKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISK 362 (699)
T ss_pred ceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchH
Confidence 4577888 778889998 1349999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhccCCCCCCceEEEccccccc-ccccCCCCccccccchHHHHHHHhhccCccchhhHhhhhccccCCccccCcc
Q psy6093 80 ANAKQRRGRAGRVQEGVCYHLYSRARE-QTFQDYPLPEIQRTRLDEVVRTLESKKFKMVSRRFKVMLNTAFTPYVWVPKQ 158 (350)
Q Consensus 80 a~~~QR~GRaGR~~~G~c~rLyt~~~~-~~~~~~~~pEi~r~~L~~~~L~~k~~~~~~~~~~f~~~l~~~~~p~~~~l~~ 158 (350)
++|+||+|||||++||+||||||++.| ..|.+.+.|||+|++|.+++|++|.+|+++. .+| +
T Consensus 363 asA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dl-vhf----------------d 425 (699)
T KOG0925|consen 363 ASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDL-VHF----------------D 425 (699)
T ss_pred hHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccc-cCC----------------c
Confidence 999999999999999999999999876 6799999999999999999999999999999 889 9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHccCCCCCCCHHHhhhccCCCchhHHHHHHHhhhcCChhHHHHHhhhccccccccccccc
Q psy6093 159 VLDPPDPASVQLSLKLLRLIDALDDDEHLTPLGYHLAKLPLDPQIGKMLLMASIFSCVDPVFTVAASLGFKDAFYCPMIG 238 (350)
Q Consensus 159 ~~~pP~~~~i~~al~~L~~lgald~~~~LT~lG~~ls~Lpldp~~ak~ll~~~~~~C~~~~l~iaa~l~~~~~~~~~~~g 238 (350)
|+|||.++++.+|++.|..++|+|++|+||++|..|++||+||+++|||+.++.|+|.+|+++|
T Consensus 426 fmDpPAPEtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsi---------------- 489 (699)
T KOG0925|consen 426 FMDPPAPETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSI---------------- 489 (699)
T ss_pred CCCCCChHHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHH----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccCCccchhcccccCCCccccCC-CchHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHccChhHHHHHHc
Q psy6093 239 KMLLMASIFSCVDPVFTVAASLGFKDAFYCPM-NMEKDVDKQKNILAQGAKSDYVVLINAMQGWEQALEHNYAHDYCREN 317 (350)
Q Consensus 239 ~~~~~~~i~s~~~~~~~~aa~ls~~~~f~~p~-~~~~~~~~~r~~f~~~~~sDhltll~~f~~w~~~~~~~~~~~~C~~~ 317 (350)
+|+||+.+.|++|. ..++.++++|+.|++ ..|||+|++|+|.+|++ ++...+||++|
T Consensus 490 ------------------sAMLsvPncFvRp~~~a~kaAdeak~~faH-~dGDHlTLlnVYhAfkq---~~~~~~WC~~~ 547 (699)
T KOG0925|consen 490 ------------------SAMLSVPNCFVRPTSSASKAADEAKETFAH-IDGDHLTLLNVYHAFKQ---NNEDPNWCYDN 547 (699)
T ss_pred ------------------HhcccCCccccCCChhHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHh---cCCChhHHHHh
Confidence 77889999999998 678889999999997 78999999999999985 34678999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHCCCCcCC
Q psy6093 318 FLTNNTLLLLRDMKDQFSRTMHEMNFISSR 347 (350)
Q Consensus 318 ~L~~~~l~~~~~lr~ql~~~l~~~~~~~~~ 347 (350)
|||+++|+.+.++|.||.++|.+.++.-.+
T Consensus 548 flN~ral~~Ad~vR~qL~rim~R~~L~~~s 577 (699)
T KOG0925|consen 548 FLNYRALKSADNVRQQLLRIMDRFNLPLCS 577 (699)
T ss_pred cccHHHHHhHHHHHHHHHHHHHHhcCcccC
Confidence 999999999999999999999999986544
No 6
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.7e-65 Score=554.17 Aligned_cols=287 Identities=31% Similarity=0.511 Sum_probs=269.6
Q ss_pred eeeeccCCCCCHHHHHHhcc-CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhh
Q psy6093 8 WFLQCPSSGLKHLQNKSVFE-LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRR 86 (350)
Q Consensus 8 ~~~~~lHs~l~~~~q~~vf~-~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 86 (350)
..+.++||+|++++|+++|+ .|.|||||||||||+|||||||+||||+|++|+++||++++++.+...||||++|.||+
T Consensus 314 ~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRa 393 (1294)
T PRK11131 314 TEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRK 393 (1294)
T ss_pred ceEeecccCCCHHHHHHHhcccCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhc
Confidence 44678899999999999999 78899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceEEEcccccccccccCCCCccccccchHHHHHHHhhccCccchhhHhhhhccccCCccccCccCCCCCCHH
Q psy6093 87 GRAGRVQEGVCYHLYSRAREQTFQDYPLPEIQRTRLDEVVRTLESKKFKMVSRRFKVMLNTAFTPYVWVPKQVLDPPDPA 166 (350)
Q Consensus 87 GRaGR~~~G~c~rLyt~~~~~~~~~~~~pEi~r~~L~~~~L~~k~~~~~~~~~~f~~~l~~~~~p~~~~l~~~~~pP~~~ 166 (350)
|||||+++|+|||||++++|..+++++.|||+|++|.+++|++|++|++++ ..| +|++||+.+
T Consensus 394 GRAGR~~~G~c~rLyte~d~~~~~~~~~PEIlR~~L~~viL~lk~lgl~di-~~F----------------~fldpP~~~ 456 (1294)
T PRK11131 394 GRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDI-AAF----------------PFVEAPDKR 456 (1294)
T ss_pred cccCCCCCcEEEEeCCHHHHHhhhcccCCccccCCHHHHHHHHHHcCCCCc-cee----------------eCCCCCCHH
Confidence 999999999999999999999999999999999999999999999999998 888 899999999
Q ss_pred HHHHHHHHHHHHHccCCC-----CCCCHHHhhhccCCCchhHHHHHHHhhhcCChhHHHHHhhhccccccccccccchhh
Q psy6093 167 SVQLSLKLLRLIDALDDD-----EHLTPLGYHLAKLPLDPQIGKMLLMASIFSCVDPVFTVAASLGFKDAFYCPMIGKML 241 (350)
Q Consensus 167 ~i~~al~~L~~lgald~~-----~~LT~lG~~ls~Lpldp~~ak~ll~~~~~~C~~~~l~iaa~l~~~~~~~~~~~g~~~ 241 (350)
+|..|++.|.++||||.+ ++||++|+.|++||+||++||||+.|..|||++++++|
T Consensus 457 ~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~I------------------- 517 (1294)
T PRK11131 457 NIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMII------------------- 517 (1294)
T ss_pred HHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHH-------------------
Confidence 999999999999999864 57999999999999999999999999999999999999
Q ss_pred hhhhhcccCCccchhcccccCCCccccCCCchHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHc---cChhHHHHHHcc
Q psy6093 242 LMASIFSCVDPVFTVAASLGFKDAFYCPMNMEKDVDKQKNILAQGAKSDYVVLINAMQGWEQALE---HNYAHDYCRENF 318 (350)
Q Consensus 242 ~~~~i~s~~~~~~~~aa~ls~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~~f~~w~~~~~---~~~~~~~C~~~~ 318 (350)
||+||+++||..|.+++++++..|++|.+ ..|||++++|+|+.|.+... .+..++||++||
T Consensus 518 ---------------aA~Lsv~dpf~~p~~~~~~a~~~~~~f~~-~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~ 581 (1294)
T PRK11131 518 ---------------TSALSIQDPRERPMDKQQASDEKHRRFAD-KESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDY 581 (1294)
T ss_pred ---------------HHHHcCCCcccCCchhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhC
Confidence 77788899999999888889999999975 68999999999999986422 234568999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCcC
Q psy6093 319 LTNNTLLLLRDMKDQFSRTMHEMNFISS 346 (350)
Q Consensus 319 L~~~~l~~~~~lr~ql~~~l~~~~~~~~ 346 (350)
||+.+|+++.+++.||.++++++|+...
T Consensus 582 L~~~~l~e~~~i~~QL~~~~~~~g~~~~ 609 (1294)
T PRK11131 582 LNYLRVREWQDIYTQLRQVVKELGIPVN 609 (1294)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999998754
No 7
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=5.9e-63 Score=537.31 Aligned_cols=288 Identities=32% Similarity=0.541 Sum_probs=269.2
Q ss_pred ceeeeccCCCCCHHHHHHhcc-CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhh
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE-LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQR 85 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~-~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR 85 (350)
.+.+.++||+|++++|+++|+ .+.|||||||||||||||||||+||||+|+.|.++||++++++.|...||||++|.||
T Consensus 306 ~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QR 385 (1283)
T TIGR01967 306 HTEILPLYARLSNKEQQRVFQPHSGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQR 385 (1283)
T ss_pred CcEEEeccCCCCHHHHHHHhCCCCCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHH
Confidence 356778899999999999999 4468999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCceEEEcccccccccccCCCCccccccchHHHHHHHhhccCccchhhHhhhhccccCCccccCccCCCCCCH
Q psy6093 86 RGRAGRVQEGVCYHLYSRAREQTFQDYPLPEIQRTRLDEVVRTLESKKFKMVSRRFKVMLNTAFTPYVWVPKQVLDPPDP 165 (350)
Q Consensus 86 ~GRaGR~~~G~c~rLyt~~~~~~~~~~~~pEi~r~~L~~~~L~~k~~~~~~~~~~f~~~l~~~~~p~~~~l~~~~~pP~~ 165 (350)
+|||||++||+|||||++++|+.+++++.|||+|++|.+++|++|++|++++ .+| +|++||+.
T Consensus 386 aGRAGR~~~G~cyRLyte~~~~~~~~~~~PEIlR~~L~~viL~l~~lg~~di-~~f----------------~fldpP~~ 448 (1283)
T TIGR01967 386 KGRCGRVAPGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRLGDI-AAF----------------PFIEAPDP 448 (1283)
T ss_pred hhhhCCCCCceEEEecCHHHHHhhhhccCcccccccHHHHHHHHHhcCCCCc-ccc----------------cCCCCCCH
Confidence 9999999999999999999999999999999999999999999999999998 888 89999999
Q ss_pred HHHHHHHHHHHHHHccCCCC---CCCHHHhhhccCCCchhHHHHHHHhhhcCChhHHHHHhhhccccccccccccchhhh
Q psy6093 166 ASVQLSLKLLRLIDALDDDE---HLTPLGYHLAKLPLDPQIGKMLLMASIFSCVDPVFTVAASLGFKDAFYCPMIGKMLL 242 (350)
Q Consensus 166 ~~i~~al~~L~~lgald~~~---~LT~lG~~ls~Lpldp~~ak~ll~~~~~~C~~~~l~iaa~l~~~~~~~~~~~g~~~~ 242 (350)
.+|..|++.|..+||||++| +||++|+.|++||+||++||||+.|..+||++++++|
T Consensus 449 ~~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~I-------------------- 508 (1283)
T TIGR01967 449 RAIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLII-------------------- 508 (1283)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHH--------------------
Confidence 99999999999999999988 8999999999999999999999999999999999999
Q ss_pred hhhhcccCCccchhcccccCCCccccCCCchHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHc---cChhHHHHHHccC
Q psy6093 243 MASIFSCVDPVFTVAASLGFKDAFYCPMNMEKDVDKQKNILAQGAKSDYVVLINAMQGWEQALE---HNYAHDYCRENFL 319 (350)
Q Consensus 243 ~~~i~s~~~~~~~~aa~ls~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~~f~~w~~~~~---~~~~~~~C~~~~L 319 (350)
||+|+.+++|..|.+++++++..+++|.. ..|||++++|+|+.|.+... .+..++||++|||
T Consensus 509 --------------aA~Ls~~dp~~~p~~~~~~a~~~~~~f~~-~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL 573 (1283)
T TIGR01967 509 --------------ASALSIQDPRERPMEKQQAADQAHARFKD-PRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYL 573 (1283)
T ss_pred --------------HHHHcCCCcCCCcchhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCc
Confidence 67778888999999888889999999975 68999999999999976432 1245789999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCcC
Q psy6093 320 TNNTLLLLRDMKDQFSRTMHEMNFISS 346 (350)
Q Consensus 320 ~~~~l~~~~~lr~ql~~~l~~~~~~~~ 346 (350)
|+.+|+++.++++||.+++++.|+...
T Consensus 574 ~~~~l~~~~~i~~QL~~~~~~~~~~~~ 600 (1283)
T TIGR01967 574 NYLRVREWQDIYRQLTQVVKELGLKLN 600 (1283)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 999999999999999999999987643
No 8
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-61 Score=509.87 Aligned_cols=289 Identities=34% Similarity=0.476 Sum_probs=255.1
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
-..++++||.||.++|.+||+ .|+||||+||||||||+|||||+||||+|+.|+++||+++|++.|.++|||||+|.
T Consensus 287 ~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~ 366 (845)
T COG1643 287 DLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASAD 366 (845)
T ss_pred CcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhh
Confidence 467888999999999999999 56699999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCceEEEcccccccccccCCCCccccccchHHHHHHHhhccCc-cchhhHhhhhccccCCccccCccCCCC
Q psy6093 84 QRRGRAGRVQEGVCYHLYSRAREQTFQDYPLPEIQRTRLDEVVRTLESKKFK-MVSRRFKVMLNTAFTPYVWVPKQVLDP 162 (350)
Q Consensus 84 QR~GRaGR~~~G~c~rLyt~~~~~~~~~~~~pEi~r~~L~~~~L~~k~~~~~-~~~~~f~~~l~~~~~p~~~~l~~~~~p 162 (350)
||+|||||++||+|||||+++.|..|++++.|||+|+||.+++|+++.+|++ ++ ..| +|+||
T Consensus 367 QRaGRAGR~~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~-~~f----------------~fld~ 429 (845)
T COG1643 367 QRAGRAGRTGPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDI-APF----------------PFLDP 429 (845)
T ss_pred hhccccccCCCceEEEecCHHHHHhcccCCChhhhhcchHHHHHHHHhcCCCCCc-ccC----------------ccCCC
Confidence 9999999999999999999999999999999999999999999999999996 88 888 89999
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCHHHhhhccCCCchhHHHHHHHhhhcCChhHHHHHhhhccccccccccccchhhh
Q psy6093 163 PDPASVQLSLKLLRLIDALDDDEHLTPLGYHLAKLPLDPQIGKMLLMASIFSCVDPVFTVAASLGFKDAFYCPMIGKMLL 242 (350)
Q Consensus 163 P~~~~i~~al~~L~~lgald~~~~LT~lG~~ls~Lpldp~~ak~ll~~~~~~C~~~~l~iaa~l~~~~~~~~~~~g~~~~ 242 (350)
|+..++..|++.|..+||||++|.||++|+.|+.||+||++|+|++.|..++|++++++|||+|++.+.
T Consensus 430 P~~~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~----------- 498 (845)
T COG1643 430 PPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDR----------- 498 (845)
T ss_pred CChHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCC-----------
Confidence 999999999999999999999999999999999999999999999999999999999999555544320
Q ss_pred hhhhcccCCccchhcccccCCCccccCCCchH---HHHHHH-HHhcc--CCCChHHHHHHHHHHHHHHHccC---hhHHH
Q psy6093 243 MASIFSCVDPVFTVAASLGFKDAFYCPMNMEK---DVDKQK-NILAQ--GAKSDYVVLINAMQGWEQALEHN---YAHDY 313 (350)
Q Consensus 243 ~~~i~s~~~~~~~~aa~ls~~~~f~~p~~~~~---~~~~~r-~~f~~--~~~sDhltll~~f~~w~~~~~~~---~~~~~ 313 (350)
.+.|..+.+.++ +.+..+ .++.. ...+||++++++|..|....... ...+|
T Consensus 499 --------------------~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~ 558 (845)
T COG1643 499 --------------------ESDFSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANG 558 (845)
T ss_pred --------------------cchhccccchhhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcC
Confidence 115666665555 333333 22321 25799999999999998654211 46789
Q ss_pred HHHccCCHHHHHHHHHHHHHHHHHHHH-CCC
Q psy6093 314 CRENFLTNNTLLLLRDMKDQFSRTMHE-MNF 343 (350)
Q Consensus 314 C~~~~L~~~~l~~~~~lr~ql~~~l~~-~~~ 343 (350)
|+.++++.++|.++..++.|+.....+ .|.
T Consensus 559 ~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~ 589 (845)
T COG1643 559 CRAMLFPTKALSRAPWIIAALLVQTSALAGR 589 (845)
T ss_pred hhhhcCChhHHHhhHHHHHHHHHhhhccccc
Confidence 999999999999999999999988877 443
No 9
>KOG0926|consensus
Probab=100.00 E-value=3.1e-61 Score=488.16 Aligned_cols=291 Identities=31% Similarity=0.502 Sum_probs=253.6
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
-+.|.+|||-|+.++|.+||+ .|.|-||||||+||||+|||+|+||||||++|.+.||..+|++.+.+.|||||+|.
T Consensus 604 pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASad 683 (1172)
T KOG0926|consen 604 PLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASAD 683 (1172)
T ss_pred ceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccc
Confidence 356778899999999999998 79999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCceEEEcccccccc-cccCCCCccccccchHHHHHHHhhccCccchhhHhhhhccccCCccccCccCCCC
Q psy6093 84 QRRGRAGRVQEGVCYHLYSRAREQ-TFQDYPLPEIQRTRLDEVVRTLESKKFKMVSRRFKVMLNTAFTPYVWVPKQVLDP 162 (350)
Q Consensus 84 QR~GRaGR~~~G~c~rLyt~~~~~-~~~~~~~pEi~r~~L~~~~L~~k~~~~~~~~~~f~~~l~~~~~p~~~~l~~~~~p 162 (350)
||+|||||++||+|||||+...|+ .|++++.|||++.|+++++|++|+++++++ .+| +|++|
T Consensus 684 QRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~kV-vnF----------------PFPtp 746 (1172)
T KOG0926|consen 684 QRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKSMNIDKV-VNF----------------PFPTP 746 (1172)
T ss_pred hhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHhcCccce-ecC----------------CCCCC
Confidence 999999999999999999999986 899999999999999999999999999999 999 88999
Q ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCHHHhhhccCCCchhHHHHHHHhhhcCChhHHHHHhhhccccccccccccchhhh
Q psy6093 163 PDPASVQLSLKLLRLIDALDDDEHLTPLGYHLAKLPLDPQIGKMLLMASIFSCVDPVFTVAASLGFKDAFYCPMIGKMLL 242 (350)
Q Consensus 163 P~~~~i~~al~~L~~lgald~~~~LT~lG~~ls~Lpldp~~ak~ll~~~~~~C~~~~l~iaa~l~~~~~~~~~~~g~~~~ 242 (350)
|...+++.|++.|..+||||.+|.||++|+.|+.||+.|+++|||+.+...+|+..++.++++|+..++|..
T Consensus 747 Pd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaLsv~e~~i~-------- 818 (1172)
T KOG0926|consen 747 PDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSALSVYEVLIV-------- 818 (1172)
T ss_pred ccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHHhccchhhh--------
Confidence 999999999999999999999999999999999999999999999999999999999999888877766521
Q ss_pred hhhhcccCCccchhcccccCCCccccCCCch-------------HHH--------HHHHHHhccCCCChHHHHHHHHHHH
Q psy6093 243 MASIFSCVDPVFTVAASLGFKDAFYCPMNME-------------KDV--------DKQKNILAQGAKSDYVVLINAMQGW 301 (350)
Q Consensus 243 ~~~i~s~~~~~~~~aa~ls~~~~f~~p~~~~-------------~~~--------~~~r~~f~~~~~sDhltll~~f~~w 301 (350)
++.+ ..++...-...+ ++. ...+.+|.. ..||.++++.+...+
T Consensus 819 --------------~~~l-l~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~-l~sd~l~Ll~Av~a~ 882 (1172)
T KOG0926|consen 819 --------------AASL-LPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSN-LDSDALVLLSAVSAA 882 (1172)
T ss_pred --------------hhhc-ccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhcc-CCccHHHHHHHHHHH
Confidence 1111 112221111100 011 122344543 569999999999999
Q ss_pred HHHHccChhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHC
Q psy6093 302 EQALEHNYAHDYCRENFLTNNTLLLLRDMKDQFSRTMHEM 341 (350)
Q Consensus 302 ~~~~~~~~~~~~C~~~~L~~~~l~~~~~lr~ql~~~l~~~ 341 (350)
..+ ++...||..|||..++|.++.++|+||..++...
T Consensus 883 ey~---~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~ 919 (1172)
T KOG0926|consen 883 EYA---ENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHG 919 (1172)
T ss_pred Hhh---hhcchhHHhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 854 3455699999999999999999999999988743
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=5.4e-51 Score=433.48 Aligned_cols=208 Identities=34% Similarity=0.434 Sum_probs=199.8
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+.++||+|++++|+++|+ +|.+||||||||||+|||||||+||||+|+.|.++||+.+|++.|.+.||||++|.
T Consensus 236 ~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~ 315 (819)
T TIGR01970 236 DVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASAT 315 (819)
T ss_pred CcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHH
Confidence 577888999999999999987 78999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCceEEEcccccccccccCCCCccccccchHHHHHHHhhccCccchhhHhhhhccccCCccccCccCCCCC
Q psy6093 84 QRRGRAGRVQEGVCYHLYSRAREQTFQDYPLPEIQRTRLDEVVRTLESKKFKMVSRRFKVMLNTAFTPYVWVPKQVLDPP 163 (350)
Q Consensus 84 QR~GRaGR~~~G~c~rLyt~~~~~~~~~~~~pEi~r~~L~~~~L~~k~~~~~~~~~~f~~~l~~~~~p~~~~l~~~~~pP 163 (350)
||+|||||++||.|||||+++.|..+++++.|||+|.+|++++|++|.+|+.++ .+| .|++||
T Consensus 316 QR~GRAGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~-~~~----------------~~l~~P 378 (819)
T TIGR01970 316 QRAGRAGRLEPGVCYRLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAKDP-SDL----------------RWLDAP 378 (819)
T ss_pred hhhhhcCCCCCCEEEEeCCHHHHHhhhcCCCcceeccCcHHHHHHHHHcCCCCh-hhC----------------CCCCCc
Confidence 999999999999999999999999999999999999999999999999999988 778 899999
Q ss_pred CHHHHHHHHHHHHHHHccCCCCCCCHHHhhhccCCCchhHHHHHHHhhhcCChhHHHHHhhhcccccc
Q psy6093 164 DPASVQLSLKLLRLIDALDDDEHLTPLGYHLAKLPLDPQIGKMLLMASIFSCVDPVFTVAASLGFKDA 231 (350)
Q Consensus 164 ~~~~i~~al~~L~~lgald~~~~LT~lG~~ls~Lpldp~~ak~ll~~~~~~C~~~~l~iaa~l~~~~~ 231 (350)
+..++..|++.|..+||||++|+||++|+.|++||+||++||||+.|..++|.+++++|||+|+..|.
T Consensus 379 ~~~~i~~a~~~L~~lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~ 446 (819)
T TIGR01970 379 PSVALAAARQLLQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGL 446 (819)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999777766553
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.5e-48 Score=415.30 Aligned_cols=203 Identities=34% Similarity=0.449 Sum_probs=191.3
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+.++||+|+.++|+++|+ +|++||||||||||+|||||||+||||+|+.|.++||+.+|++.|.+.||||++|.
T Consensus 239 ~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~ 318 (812)
T PRK11664 239 DVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMT 318 (812)
T ss_pred CceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhh
Confidence 577888999999999999987 78999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCceEEEcccccccccccCCCCccccccchHHHHHHHhhccCccchhhHhhhhccccCCccccCccCCCCC
Q psy6093 84 QRRGRAGRVQEGVCYHLYSRAREQTFQDYPLPEIQRTRLDEVVRTLESKKFKMVSRRFKVMLNTAFTPYVWVPKQVLDPP 163 (350)
Q Consensus 84 QR~GRaGR~~~G~c~rLyt~~~~~~~~~~~~pEi~r~~L~~~~L~~k~~~~~~~~~~f~~~l~~~~~p~~~~l~~~~~pP 163 (350)
||+|||||++||.|||||+++.|..+++++.|||+|.+|++++|.+|.+|+.++ .+| +|+|||
T Consensus 319 QR~GRaGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~-~~~----------------~~ld~P 381 (812)
T PRK11664 319 QRAGRAGRLEPGICLHLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWGCHDP-AQL----------------SWLDQP 381 (812)
T ss_pred hhccccCCCCCcEEEEecCHHHHhhCccCCCCceeccchHHHHHHHHHcCCCCH-HhC----------------CCCCCC
Confidence 999999999999999999999999999999999999999999999999999888 788 899999
Q ss_pred CHHHHHHHHHHHHHHHccCCCCCCCHHHhhhccCCCchhHHHHHHHhhhcCChh--HHHHHhhhc
Q psy6093 164 DPASVQLSLKLLRLIDALDDDEHLTPLGYHLAKLPLDPQIGKMLLMASIFSCVD--PVFTVAASL 226 (350)
Q Consensus 164 ~~~~i~~al~~L~~lgald~~~~LT~lG~~ls~Lpldp~~ak~ll~~~~~~C~~--~~l~iaa~l 226 (350)
+..++..|++.|..+||||++|+||++|+.|++||+||++||||+.|..++|.. .+..+||.|
T Consensus 382 ~~~~~~~A~~~L~~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall 446 (812)
T PRK11664 382 PAAALAAAKRLLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAIL 446 (812)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999998543 444444433
No 12
>KOG0921|consensus
Probab=100.00 E-value=3.5e-37 Score=316.08 Aligned_cols=289 Identities=34% Similarity=0.548 Sum_probs=250.0
Q ss_pred eeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhh
Q psy6093 9 FLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQR 85 (350)
Q Consensus 9 ~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR 85 (350)
...++|+.++..+|++||+ .|.+|+|++|||||+|+||++++||||+++.|++-|-...++....++|.||-+-+||
T Consensus 676 ~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr 755 (1282)
T KOG0921|consen 676 EILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQR 755 (1282)
T ss_pred ccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhh
Confidence 4456699999999999998 5999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCceEEEcccccccccccCCCCccccccchHHHHHHHhhccCccchhhHhhhhccccCCccccCccCCCCCCH
Q psy6093 86 RGRAGRVQEGVCYHLYSRAREQTFQDYPLPEIQRTRLDEVVRTLESKKFKMVSRRFKVMLNTAFTPYVWVPKQVLDPPDP 165 (350)
Q Consensus 86 ~GRaGR~~~G~c~rLyt~~~~~~~~~~~~pEi~r~~L~~~~L~~k~~~~~~~~~~f~~~l~~~~~p~~~~l~~~~~pP~~ 165 (350)
+||+||++||.||++.+...|+.+.++-.||+.|.++.+..|.+|.+....+ ..| +...+.||+.
T Consensus 756 ~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI-~~f--------------l~kal~~~p~ 820 (1282)
T KOG0921|consen 756 KGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSI-GEF--------------LGKALQPPPY 820 (1282)
T ss_pred cccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhH-HHH--------------HhhccCCCch
Confidence 9999999999999999999999999999999999999999999999999998 888 7789999999
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCHHHhhhccCCCchhHHHHHHHhhhcCChhHHHHHhhhccccccccccccchhhhhhh
Q psy6093 166 ASVQLSLKLLRLIDALDDDEHLTPLGYHLAKLPLDPQIGKMLLMASIFSCVDPVFTVAASLGFKDAFYCPMIGKMLLMAS 245 (350)
Q Consensus 166 ~~i~~al~~L~~lgald~~~~LT~lG~~ls~Lpldp~~ak~ll~~~~~~C~~~~l~iaa~l~~~~~~~~~~~g~~~~~~~ 245 (350)
.++..+...|.+++++|.++.+|++|+.++++|+.|.++||++.+..++|.+.+..+
T Consensus 821 dav~e~e~~l~~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~----------------------- 877 (1282)
T KOG0921|consen 821 DAVIEAEAVLREMGALDANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDV----------------------- 877 (1282)
T ss_pred hhccCchHHHHHhhhhhccCcccchhhhhhhccCcccccceeeechhhccchhhhhh-----------------------
Confidence 999999999999999999999999999999999999999999999999999887766
Q ss_pred hcccCCccchhcccccCCCccccCCCchHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHccC--hhHHHHHHccCCHHH
Q psy6093 246 IFSCVDPVFTVAASLGFKDAFYCPMNMEKDVDKQKNILAQGAKSDYVVLINAMQGWEQALEHN--YAHDYCRENFLTNNT 323 (350)
Q Consensus 246 i~s~~~~~~~~aa~ls~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~~f~~w~~~~~~~--~~~~~C~~~~L~~~~ 323 (350)
|+.++...+|..-..........++.|+++..|||.+...+-+.|..+...+ ..+.||..+.++.+.
T Consensus 878 -----------as~~s~~~~~~~~~~~~~rl~g~q~~~~g~kfsdhva~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~ 946 (1282)
T KOG0921|consen 878 -----------ASAMSFPTPFVPREKHHSRLSGTQRKFAGNKFSDHVAIVSVIQGYREAVQMGAAAEREFCERYSLSNPV 946 (1282)
T ss_pred -----------hcccccccccccccccccccccchhhccccccccchhhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchh
Confidence 2222322222221111112233456677766777777777766666543333 467899999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCcC
Q psy6093 324 LLLLRDMKDQFSRTMHEMNFISS 346 (350)
Q Consensus 324 l~~~~~lr~ql~~~l~~~~~~~~ 346 (350)
|+.....+.|+.++|+.++|...
T Consensus 947 ~~~t~~a~~ql~d~L~q~~fpe~ 969 (1282)
T KOG0921|consen 947 LKMTDGARRQLIDVLRQCSFPED 969 (1282)
T ss_pred hhhhhhhHHHHHHHHHhccCccc
Confidence 99999999999999999988754
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.4e-33 Score=290.88 Aligned_cols=168 Identities=18% Similarity=0.263 Sum_probs=146.1
Q ss_pred ceeeeccCCCCCHHHH--HHhccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHh
Q psy6093 7 IWFLQCPSSGLKHLQN--KSVFELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQ 84 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q--~~vf~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~Q 84 (350)
++.+.++||+|++.+| +++|++|++||||||||||+|||||||++|||+|++|.+. +..++ ..|||+++|.|
T Consensus 421 ~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~Q 494 (675)
T PHA02653 421 IYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQ 494 (675)
T ss_pred CceEEeccCCcCHHHHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC--cccCc----ccccCHHHHHH
Confidence 5778899999999866 4455689999999999999999999999999999998774 44443 56999999999
Q ss_pred hhccCCCCCCceEEEcccccccccccCCCCccccccc---hHHHHHHHhhccCccchhhHhhhhccccCCccccCccCCC
Q psy6093 85 RRGRAGRVQEGVCYHLYSRAREQTFQDYPLPEIQRTR---LDEVVRTLESKKFKMVSRRFKVMLNTAFTPYVWVPKQVLD 161 (350)
Q Consensus 85 R~GRaGR~~~G~c~rLyt~~~~~~~~~~~~pEi~r~~---L~~~~L~~k~~~~~~~~~~f~~~l~~~~~p~~~~l~~~~~ 161 (350)
|+|||||+++|.||+||+++.. .| |+|.+ |.+++|++|+||++.. ++ .|++
T Consensus 495 RaGRAGR~~~G~c~rLyt~~~~-------~p-I~ri~~~~L~~~vL~lk~~g~~~~--~~----------------~~ld 548 (675)
T PHA02653 495 RKGRVGRVSPGTYVYFYDLDLL-------KP-IKRIDSEFLHNYILYAKYFNLTLP--ED----------------LFVI 548 (675)
T ss_pred hccCcCCCCCCeEEEEECHHHh-------HH-HHHHhHHHHHHHHHHHHHcCCCCc--cc----------------ccCC
Confidence 9999999999999999999764 24 66666 8899999999999654 44 4899
Q ss_pred CCCHHHHHHHHHHHHHHHccCCCCCCCHH--HhhhccCCCchhHHHHHHHhhh
Q psy6093 162 PPDPASVQLSLKLLRLIDALDDDEHLTPL--GYHLAKLPLDPQIGKMLLMASI 212 (350)
Q Consensus 162 pP~~~~i~~al~~L~~lgald~~~~LT~l--G~~ls~Lpldp~~ak~ll~~~~ 212 (350)
||+.+++..|++.|..+||+|+ +||.+ |+.++.+ ++||++++|..
T Consensus 549 pP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~ 595 (675)
T PHA02653 549 PSNLDRLRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGI 595 (675)
T ss_pred CCCHHHHHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccH
Confidence 9999999999999999998864 89999 9999999 99999998754
No 14
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.77 E-value=7.7e-19 Score=142.62 Aligned_cols=92 Identities=36% Similarity=0.662 Sum_probs=66.5
Q ss_pred HHHHHHHHHHccCCCCCCCHHHhhhccCCCchhHHHHHHHhhhcCChhHHHHHhhhccccccccccccchhhhhhhhccc
Q psy6093 170 LSLKLLRLIDALDDDEHLTPLGYHLAKLPLDPQIGKMLLMASIFSCVDPVFTVAASLGFKDAFYCPMIGKMLLMASIFSC 249 (350)
Q Consensus 170 ~al~~L~~lgald~~~~LT~lG~~ls~Lpldp~~ak~ll~~~~~~C~~~~l~iaa~l~~~~~~~~~~~g~~~~~~~i~s~ 249 (350)
+|++.|+.+||||++++||++|+.|++||++|++||||+.|..++|.+++++|
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~i--------------------------- 53 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALII--------------------------- 53 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHH---------------------------
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHH---------------------------
Confidence 48899999999999999999999999999999999999999999999999999
Q ss_pred CCccchhcccccCCCccccCCCchHHHH--HHHHHh--------ccCCCChHHHHH
Q psy6093 250 VDPVFTVAASLGFKDAFYCPMNMEKDVD--KQKNIL--------AQGAKSDYVVLI 295 (350)
Q Consensus 250 ~~~~~~~aa~ls~~~~f~~p~~~~~~~~--~~r~~f--------~~~~~sDhltll 295 (350)
+|+++.+++|..|.+.++..+ ..+++| ..+..|||+|++
T Consensus 54 -------aa~ls~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 54 -------AAILSVRSPFINPDDKEENAEQDNAKKKFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp -------HHHHTSS--B---CCGHHHHHH--HHHTT----------BTTBHHHHHH
T ss_pred -------HHHHcCCCcccCccHHHHHHHHHHHHHHhhhhhcccccCCCCCCHHhcC
Confidence 667788888888776554333 233333 234789999986
No 15
>PRK01172 ski2-like helicase; Provisional
Probab=99.74 E-value=4.7e-18 Score=179.74 Aligned_cols=182 Identities=21% Similarity=0.205 Sum_probs=129.1
Q ss_pred eeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhh
Q psy6093 10 LQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRR 86 (350)
Q Consensus 10 ~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 86 (350)
+..+||+|++++|+.+++ .|..||++||++++.|+++|+..+||+. ..+|+. ....++|.+++.||+
T Consensus 288 v~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~----~~~~~~------~~~~~~s~~~~~Qm~ 357 (674)
T PRK01172 288 VAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRD----ITRYGN------GGIRYLSNMEIKQMI 357 (674)
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcC----ceEeCC------CCceeCCHHHHHHHh
Confidence 445699999999999965 8999999999999999999999888852 233432 233579999999999
Q ss_pred ccCCCCC---CceEEEc-ccccccc---c-ccCCCC--------ccccccchHHHHHHHhhccCccchhhHhhhhccccC
Q psy6093 87 GRAGRVQ---EGVCYHL-YSRAREQ---T-FQDYPL--------PEIQRTRLDEVVRTLESKKFKMVSRRFKVMLNTAFT 150 (350)
Q Consensus 87 GRaGR~~---~G~c~rL-yt~~~~~---~-~~~~~~--------pEi~r~~L~~~~L~~k~~~~~~~~~~f~~~l~~~~~ 150 (350)
|||||.+ .|.++-+ +++..++ . +...+. ++..+.++...+......+..++ .+| ++.||.
T Consensus 358 GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~-~~~---l~~tf~ 433 (674)
T PRK01172 358 GRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDL-ILF---YNETLM 433 (674)
T ss_pred hcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHH-HHH---HHhhhh
Confidence 9999986 5666654 3333222 2 222222 23444444344443333344555 555 566663
Q ss_pred CccccCccCCCCC-C--HHHHHHHHHHHHHHHccCCCC--CCCHHHhhhccCCCchhHHHHHHHhhhc
Q psy6093 151 PYVWVPKQVLDPP-D--PASVQLSLKLLRLIDALDDDE--HLTPLGYHLAKLPLDPQIGKMLLMASIF 213 (350)
Q Consensus 151 p~~~~l~~~~~pP-~--~~~i~~al~~L~~lgald~~~--~LT~lG~~ls~Lpldp~~ak~ll~~~~~ 213 (350)
.. +++ . .+.++.+++.|.+.|+|+.++ .+|++|+.++++|++|..++.+..+..-
T Consensus 434 ~~--------~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~ 493 (674)
T PRK01172 434 AI--------QNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPESALILKSAFDH 493 (674)
T ss_pred Hh--------cCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHHHHHHHHHHhhc
Confidence 21 222 2 567999999999999998654 6899999999999999999999887653
No 16
>PRK02362 ski2-like helicase; Provisional
Probab=99.70 E-value=6.3e-16 Score=165.07 Aligned_cols=186 Identities=18% Similarity=0.142 Sum_probs=133.9
Q ss_pred eeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhh
Q psy6093 10 LQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRR 86 (350)
Q Consensus 10 ~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 86 (350)
+..+||||++++|+.+.+ .|..+|++||++++.||++|++++||+. ..+||+..| ..++|.+++.||+
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g-----~~~~s~~~y~Qm~ 376 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAG-----MQPIPVLEYHQMA 376 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEec----ceeecCCCC-----ceeCCHHHHHHHh
Confidence 455699999999999955 9999999999999999999999999964 456876543 2579999999999
Q ss_pred ccCCCCC---CceEEEcccccc-----cccccCCCCcccccc------chHHHHHHHhhccC----ccchhhHhhhhccc
Q psy6093 87 GRAGRVQ---EGVCYHLYSRAR-----EQTFQDYPLPEIQRT------RLDEVVRTLESKKF----KMVSRRFKVMLNTA 148 (350)
Q Consensus 87 GRaGR~~---~G~c~rLyt~~~-----~~~~~~~~~pEi~r~------~L~~~~L~~k~~~~----~~~~~~f~~~l~~~ 148 (350)
|||||.+ .|.|+-+..... |+.+-.. .||-..+ .|.+.++...+.|. .+. .+| ++.|
T Consensus 377 GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~-~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~-~~~---l~~T 451 (737)
T PRK02362 377 GRAGRPGLDPYGEAVLLAKSYDELDELFERYIWA-DPEDVRSKLATEPALRTHVLSTIASGFARTRDGL-LEF---LEAT 451 (737)
T ss_pred hcCCCCCCCCCceEEEEecCchhHHHHHHHHHhC-CCCceeecCCChhhHHHHHHHHHHhCccCCHHHH-HHH---HHhC
Confidence 9999986 399998876531 2222211 2221111 24444555544442 333 334 6667
Q ss_pred cCCccccCccCCCCCCHHHHHHHHHHHHHHHccCCCC---CCCHHHhhhccCCCchhHHHHHHHhhhc
Q psy6093 149 FTPYVWVPKQVLDPPDPASVQLSLKLLRLIDALDDDE---HLTPLGYHLAKLPLDPQIGKMLLMASIF 213 (350)
Q Consensus 149 ~~p~~~~l~~~~~pP~~~~i~~al~~L~~lgald~~~---~LT~lG~~ls~Lpldp~~ak~ll~~~~~ 213 (350)
|+..+. -.+..-.+.++.+++.|.+.|+|+.++ .+|++|+.++.++++|..++.+..+...
T Consensus 452 f~~~~~----~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~ 515 (737)
T PRK02362 452 FYATQT----DDTGRLERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLEA 515 (737)
T ss_pred hHHhhc----cchHHHHHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhhh
Confidence 644321 011123456899999999999998765 4999999999999999999999887643
No 17
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.69 E-value=2.9e-17 Score=130.31 Aligned_cols=91 Identities=43% Similarity=0.710 Sum_probs=76.6
Q ss_pred HHHHHHHHHHccCCCCCCCHHHhhhccCCCchhHHHHHHHhhhc-CChhHHHHHhhhccccccccccccchhhhhhhhcc
Q psy6093 170 LSLKLLRLIDALDDDEHLTPLGYHLAKLPLDPQIGKMLLMASIF-SCVDPVFTVAASLGFKDAFYCPMIGKMLLMASIFS 248 (350)
Q Consensus 170 ~al~~L~~lgald~~~~LT~lG~~ls~Lpldp~~ak~ll~~~~~-~C~~~~l~iaa~l~~~~~~~~~~~g~~~~~~~i~s 248 (350)
+|++.|+.+||||.+++||++|+.|++||+||++||||+.|..+ +|.+++++|
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i-------------------------- 54 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTI-------------------------- 54 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHH--------------------------
Confidence 37899999999999999999999999999999999999999999 999999999
Q ss_pred cCCccchhcccccCCCccccCCCchHHHHHHHHHhccCCCChHHHHH
Q psy6093 249 CVDPVFTVAASLGFKDAFYCPMNMEKDVDKQKNILAQGAKSDYVVLI 295 (350)
Q Consensus 249 ~~~~~~~~aa~ls~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll 295 (350)
++.++..++|..| ..+++....++.|..+..|||++++
T Consensus 55 --------~a~ls~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~l 92 (92)
T smart00847 55 --------AAMLSVGDPFPRP-EKRAEADAARRRFASGRESDHLTLL 92 (92)
T ss_pred --------HHHhcCCCCcCCc-hHHHHHHHHHHHccCCCCCChhhhC
Confidence 5556666666655 4556667778888753379999863
No 18
>PRK00254 ski2-like helicase; Provisional
Probab=99.61 E-value=2.4e-14 Score=152.60 Aligned_cols=185 Identities=17% Similarity=0.150 Sum_probs=124.7
Q ss_pred eeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhh
Q psy6093 9 FLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQR 85 (350)
Q Consensus 9 ~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR 85 (350)
-+..+||+|++++|+.+.+ .|..||+|||++++.||++|++++||... ..|+. . ...+++.+++.||
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~----~~~~~-~-----~~~~~~~~~~~Qm 366 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDT----KRYSN-F-----GWEDIPVLEIQQM 366 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCc----eEcCC-C-----CceeCCHHHHHHh
Confidence 3666799999999998854 99999999999999999999999999432 34431 1 2234667899999
Q ss_pred hccCCCCC---CceEEEcccccc----cccc---------cCCCCccccccchHHHHHHHhhccCccchhhHhhhhcccc
Q psy6093 86 RGRAGRVQ---EGVCYHLYSRAR----EQTF---------QDYPLPEIQRTRLDEVVRTLESKKFKMVSRRFKVMLNTAF 149 (350)
Q Consensus 86 ~GRaGR~~---~G~c~rLyt~~~----~~~~---------~~~~~pEi~r~~L~~~~L~~k~~~~~~~~~~f~~~l~~~~ 149 (350)
+|||||.+ .|.++-+.+... ++.+ ...+.++.++..+...+... ++.+. .+...-+..||
T Consensus 367 ~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~---~~~~~-~~~~~~l~~Tf 442 (720)
T PRK00254 367 MGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNF---GVSNF-KELVNFLERTF 442 (720)
T ss_pred hhccCCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhC---CCCCH-HHHHHHHHhCH
Confidence 99999975 688887765422 2222 12223334444444333321 12222 22222266666
Q ss_pred CCccccCccCCCCC-CHHHHHHHHHHHHHHHccCCC----CCCCHHHhhhccCCCchhHHHHHHHhhh
Q psy6093 150 TPYVWVPKQVLDPP-DPASVQLSLKLLRLIDALDDD----EHLTPLGYHLAKLPLDPQIGKMLLMASI 212 (350)
Q Consensus 150 ~p~~~~l~~~~~pP-~~~~i~~al~~L~~lgald~~----~~LT~lG~~ls~Lpldp~~ak~ll~~~~ 212 (350)
+.. +..++. -.+.++.+++.|.+.|+|+.+ -..|++|+.++.++++|..++.+..+..
T Consensus 443 ~~~-----~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~ 505 (720)
T PRK00254 443 YAH-----QRKDLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFP 505 (720)
T ss_pred HHH-----hhcChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHH
Confidence 432 111111 135678889999999998643 3679999999999999999999987653
No 19
>KOG0921|consensus
Probab=99.38 E-value=5.8e-14 Score=146.13 Aligned_cols=282 Identities=9% Similarity=-0.175 Sum_probs=225.0
Q ss_pred eeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhh
Q psy6093 10 LQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRR 86 (350)
Q Consensus 10 ~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 86 (350)
....|+.++..+++.|++ .+.++++..|+.++++|++-.+.+|++++..+.+.+-....++...+.|-++-..+||.
T Consensus 685 ~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~ 764 (1282)
T KOG0921|consen 685 TSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRP 764 (1282)
T ss_pred ccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecc
Confidence 344599999999999999 78899999999999999999999999999999999888888888999999999999999
Q ss_pred ccCCCCCCceEEEcccccccccccCCCCccccccchHHHHHHHhhccCccchhhHhhhhccccCCccccCccCCCCCCHH
Q psy6093 87 GRAGRVQEGVCYHLYSRAREQTFQDYPLPEIQRTRLDEVVRTLESKKFKMVSRRFKVMLNTAFTPYVWVPKQVLDPPDPA 166 (350)
Q Consensus 87 GRaGR~~~G~c~rLyt~~~~~~~~~~~~pEi~r~~L~~~~L~~k~~~~~~~~~~f~~~l~~~~~p~~~~l~~~~~pP~~~ 166 (350)
|+|+|.+.+.||.+...+.+..|..++.|||-++++....+.++.+-.+.+ ..| +.+...+|+..
T Consensus 765 G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal-~~~--------------p~dav~e~e~~ 829 (1282)
T KOG0921|consen 765 GFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKAL-QPP--------------PYDAVIEAEAV 829 (1282)
T ss_pred cccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhcc-CCC--------------chhhccCchHH
Confidence 999999999999999999999999999999999998888877777655555 444 34778888877
Q ss_pred HHHHHHHHHHHHHccCCCCCCCHHHhhhccCCCchhHHHHHHHhhhcCChhHHHHHhhhccccccccccccchhhhhhhh
Q psy6093 167 SVQLSLKLLRLIDALDDDEHLTPLGYHLAKLPLDPQIGKMLLMASIFSCVDPVFTVAASLGFKDAFYCPMIGKMLLMASI 246 (350)
Q Consensus 167 ~i~~al~~L~~lgald~~~~LT~lG~~ls~Lpldp~~ak~ll~~~~~~C~~~~l~iaa~l~~~~~~~~~~~g~~~~~~~i 246 (350)
....+...+....+.+.+-.+|.+++....+|+.|..+++....+.+--.+-..++
T Consensus 830 l~~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~------------------------ 885 (1282)
T KOG0921|consen 830 LREMGALDANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPT------------------------ 885 (1282)
T ss_pred HHHhhhhhccCcccchhhhhhhccCcccccceeeechhhccchhhhhhhccccccc------------------------
Confidence 77666666665555555667899999999999999999998877655333322222
Q ss_pred cccCCccchhcccccCCCccccCCCchHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHccC-hhHHHHHHccCCHHHHH
Q psy6093 247 FSCVDPVFTVAASLGFKDAFYCPMNMEKDVDKQKNILAQGAKSDYVVLINAMQGWEQALEHN-YAHDYCRENFLTNNTLL 325 (350)
Q Consensus 247 ~s~~~~~~~~aa~ls~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~~f~~w~~~~~~~-~~~~~C~~~~L~~~~l~ 325 (350)
++ .-..+.+|.. .+. ...-...+|+++-.+||.+++..+..|..+.... ....||..+-++.-++.
T Consensus 886 -----~~-----~~~~~~~~rl-~g~--q~~~~g~kfsdhva~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~ 952 (1282)
T KOG0921|consen 886 -----PF-----VPREKHHSRL-SGT--QRKFAGNKFSDHVAIVSVIQGYREAVQMGAAAEREFCERYSLSNPVLKMTDG 952 (1282)
T ss_pred -----cc-----cccccccccc-ccc--hhhccccccccchhhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhh
Confidence 11 1111222221 112 2234577898888999999999999998766544 66788999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCC
Q psy6093 326 LLRDMKDQFSRTMHEMNFI 344 (350)
Q Consensus 326 ~~~~lr~ql~~~l~~~~~~ 344 (350)
.-+++..||. ++.--+++
T Consensus 953 a~~ql~d~L~-q~~fpe~~ 970 (1282)
T KOG0921|consen 953 ARRQLIDVLR-QCSFPEDI 970 (1282)
T ss_pred hHHHHHHHHH-hccCcccc
Confidence 9999999998 66544443
No 20
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.21 E-value=1.3e-11 Score=125.05 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=70.5
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||++++++|+++++ .|..+|+|||+++|.|++||+|++||+.++ |-+..++.
T Consensus 266 ~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~------------------p~~~~~yi 327 (460)
T PRK11776 266 GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYEL------------------ARDPEVHV 327 (460)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecC------------------CCCHhHhh
Confidence 567788899999999999965 899999999999999999999999998433 23567789
Q ss_pred hhhccCCCCC-CceEEEcccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
||.||+||.+ .|.||.+++..+
T Consensus 328 qR~GRtGR~g~~G~ai~l~~~~e 350 (460)
T PRK11776 328 HRIGRTGRAGSKGLALSLVAPEE 350 (460)
T ss_pred hhcccccCCCCcceEEEEEchhH
Confidence 9999999987 799999998753
No 21
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.21 E-value=1.5e-11 Score=128.95 Aligned_cols=82 Identities=26% Similarity=0.231 Sum_probs=72.4
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+|++++|+++++ .|..+|+|||++++.||++|+|++||+ ||. |-|..++.
T Consensus 260 g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~--------~d~----------P~s~~~y~ 321 (607)
T PRK11057 260 GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH--------FDI----------PRNIESYY 321 (607)
T ss_pred CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE--------eCC----------CCCHHHHH
Confidence 567788899999999999966 888999999999999999999999997 443 34788999
Q ss_pred hhhccCCCCC-CceEEEccccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRARE 106 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~~ 106 (350)
||+|||||.+ +|.|+-+|+..+.
T Consensus 322 Qr~GRaGR~G~~~~~ill~~~~d~ 345 (607)
T PRK11057 322 QETGRAGRDGLPAEAMLFYDPADM 345 (607)
T ss_pred HHhhhccCCCCCceEEEEeCHHHH
Confidence 9999999987 7999999988654
No 22
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.21 E-value=1.6e-11 Score=125.00 Aligned_cols=82 Identities=23% Similarity=0.215 Sum_probs=71.5
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
+..+..+||+|++++|+++++ .|..+|+|||++++.||++|+|++||..+. |-|.+++.
T Consensus 250 g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~------------------P~s~~~y~ 311 (470)
T TIGR00614 250 GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL------------------PKSMESYY 311 (470)
T ss_pred CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC------------------CCCHHHHH
Confidence 566778899999999999865 899999999999999999999999997332 34678899
Q ss_pred hhhccCCCCC-CceEEEccccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRARE 106 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~~ 106 (350)
||+|||||.+ +|.|+-+|+..+.
T Consensus 312 Qr~GRaGR~G~~~~~~~~~~~~d~ 335 (470)
T TIGR00614 312 QESGRAGRDGLPSECHLFYAPADI 335 (470)
T ss_pred hhhcCcCCCCCCceEEEEechhHH
Confidence 9999999987 8999999988654
No 23
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.20 E-value=3.1e-11 Score=92.21 Aligned_cols=70 Identities=21% Similarity=0.248 Sum_probs=61.6
Q ss_pred cceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhH
Q psy6093 6 QIWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANA 82 (350)
Q Consensus 6 ~~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~ 82 (350)
.++.+..+||+++.++++++++ .+..+|++||++++.|+++|++++||..+. +-|..++
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~------------------~~~~~~~ 67 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDP------------------PWSPEEY 67 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSS------------------ESSHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccccccc------------------CCCHHHH
Confidence 3678888999999999999976 777799999999999999999999997433 5688899
Q ss_pred HhhhccCCCCC
Q psy6093 83 KQRRGRAGRVQ 93 (350)
Q Consensus 83 ~QR~GRaGR~~ 93 (350)
.||.||+||.+
T Consensus 68 ~Q~~GR~~R~g 78 (78)
T PF00271_consen 68 IQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSTTT
T ss_pred HHHhhcCCCCC
Confidence 99999999964
No 24
>PTZ00424 helicase 45; Provisional
Probab=99.19 E-value=1.4e-11 Score=122.16 Aligned_cols=82 Identities=18% Similarity=0.402 Sum_probs=71.6
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+++.++|+++++ .|..+|+|||++++.|+++|++++||+ ||. +.|..++.
T Consensus 291 ~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~--------~~~----------p~s~~~y~ 352 (401)
T PTZ00424 291 DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN--------YDL----------PASPENYI 352 (401)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE--------ECC----------CCCHHHEe
Confidence 456778899999999999865 899999999999999999999999997 332 45788899
Q ss_pred hhhccCCCCC-CceEEEccccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRARE 106 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~~ 106 (350)
||+|||||.+ .|.||.++++.+.
T Consensus 353 qr~GRagR~g~~G~~i~l~~~~~~ 376 (401)
T PTZ00424 353 HRIGRSGRFGRKGVAINFVTPDDI 376 (401)
T ss_pred ecccccccCCCCceEEEEEcHHHH
Confidence 9999999976 8999999988653
No 25
>PTZ00110 helicase; Provisional
Probab=99.19 E-value=2.2e-11 Score=126.12 Aligned_cols=82 Identities=26% Similarity=0.499 Sum_probs=72.0
Q ss_pred cceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhH
Q psy6093 6 QIWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANA 82 (350)
Q Consensus 6 ~~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~ 82 (350)
.+|.+.++||++++++|..+++ .|..+|+|||++++.||+||+|++||+ ||. +-+.+++
T Consensus 400 ~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~--------~d~----------P~s~~~y 461 (545)
T PTZ00110 400 DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN--------FDF----------PNQIEDY 461 (545)
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE--------eCC----------CCCHHHH
Confidence 3678888999999999998865 899999999999999999999999998 543 3466789
Q ss_pred HhhhccCCCCC-CceEEEcccccc
Q psy6093 83 KQRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 83 ~QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
.||+||+||.+ .|.||.++++.+
T Consensus 462 vqRiGRtGR~G~~G~ai~~~~~~~ 485 (545)
T PTZ00110 462 VHRIGRTGRAGAKGASYTFLTPDK 485 (545)
T ss_pred HHHhcccccCCCCceEEEEECcch
Confidence 99999999986 799999999854
No 26
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.18 E-value=2.1e-11 Score=125.52 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=71.7
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+++.++|..+++ .|..+|+|||++++.||+||+|++||+ ||. |.|..++.
T Consensus 392 g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~--------~d~----------P~s~~~yi 453 (518)
T PLN00206 392 GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII--------FDM----------PNTIKEYI 453 (518)
T ss_pred CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE--------eCC----------CCCHHHHH
Confidence 677788899999999999965 899999999999999999999999997 543 45778999
Q ss_pred hhhccCCCCC-CceEEEcccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
||+|||||.+ +|.++.++++++
T Consensus 454 hRiGRaGR~g~~G~ai~f~~~~~ 476 (518)
T PLN00206 454 HQIGRASRMGEKGTAIVFVNEED 476 (518)
T ss_pred HhccccccCCCCeEEEEEEchhH
Confidence 9999999987 799999988754
No 27
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.17 E-value=1.5e-11 Score=123.28 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=71.3
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||++++++|.++++ .|..+|+|||++++.||+||+|++||+ ||. |-|..+|.
T Consensus 279 g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~--------~d~----------P~s~~~yi 340 (423)
T PRK04837 279 GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN--------YDL----------PDDCEDYV 340 (423)
T ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE--------eCC----------CCchhheE
Confidence 677888999999999999865 899999999999999999999999998 554 34667788
Q ss_pred hhhccCCCCC-CceEEEcccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
||+||+||.+ .|.++-++++++
T Consensus 341 qR~GR~gR~G~~G~ai~~~~~~~ 363 (423)
T PRK04837 341 HRIGRTGRAGASGHSISLACEEY 363 (423)
T ss_pred eccccccCCCCCeeEEEEeCHHH
Confidence 9999999987 799999998764
No 28
>KOG0331|consensus
Probab=99.16 E-value=2e-11 Score=123.54 Aligned_cols=83 Identities=19% Similarity=0.417 Sum_probs=73.0
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
+|.++++||..+++||..+++ +|+.+|+||||+|..|++||||++||+ ||+..++ ..|.
T Consensus 365 ~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn--------ydfP~~v----------EdYV 426 (519)
T KOG0331|consen 365 GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN--------YDFPNNV----------EDYV 426 (519)
T ss_pred CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe--------CCCCCCH----------HHHH
Confidence 499999999999999999955 999999999999999999999999998 8776654 4567
Q ss_pred hhhccCCCCC-CceEEEcccccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAREQ 107 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~~~ 107 (350)
+|.||+||.+ .|..|-+|+...+.
T Consensus 427 HRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 427 HRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred hhcCccccCCCCceEEEEEeHHHHH
Confidence 7999999954 79999999987553
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.15 E-value=5.2e-11 Score=121.28 Aligned_cols=80 Identities=23% Similarity=0.236 Sum_probs=70.4
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+++.++|+++++ .|..+||||||++|.||+||+|++||+.|+ +-|.+++.
T Consensus 359 ~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~------------------P~s~~~y~ 420 (475)
T PRK01297 359 GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL------------------PEDPDDYV 420 (475)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCC------------------CCCHHHHH
Confidence 566777899999999988865 899999999999999999999999998432 45788999
Q ss_pred hhhccCCCCC-CceEEEccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
||+|||||.+ .|.++-+++++
T Consensus 421 Qr~GRaGR~g~~g~~i~~~~~~ 442 (475)
T PRK01297 421 HRIGRTGRAGASGVSISFAGED 442 (475)
T ss_pred HhhCccCCCCCCceEEEEecHH
Confidence 9999999987 79999998875
No 30
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.15 E-value=4.5e-11 Score=129.88 Aligned_cols=82 Identities=22% Similarity=0.178 Sum_probs=71.6
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+|++++|+.+.+ .|..+|||||++++.||++|+|++||. ||. |-|-.+|.
T Consensus 704 Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH--------ydl----------PkSiEsYy 765 (1195)
T PLN03137 704 GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH--------HSL----------PKSIEGYH 765 (1195)
T ss_pred CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEE--------cCC----------CCCHHHHH
Confidence 667888999999999998865 889999999999999999999999997 332 33667899
Q ss_pred hhhccCCCCC-CceEEEccccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRARE 106 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~~ 106 (350)
||.|||||-+ +|.|+-+|+..++
T Consensus 766 QriGRAGRDG~~g~cILlys~~D~ 789 (1195)
T PLN03137 766 QECGRAGRDGQRSSCVLYYSYSDY 789 (1195)
T ss_pred hhhcccCCCCCCceEEEEecHHHH
Confidence 9999999987 8999999987654
No 31
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.09 E-value=2.4e-10 Score=121.94 Aligned_cols=186 Identities=21% Similarity=0.203 Sum_probs=119.0
Q ss_pred cCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccC
Q psy6093 13 PSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRA 89 (350)
Q Consensus 13 lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRa 89 (350)
.|+||+.++|+.+ |..|+.|||+||+....||+.|.-++||- -..+||+..| ...|++.+..|+.|||
T Consensus 320 HhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk----~~~~y~~~~g-----~~~i~~~dv~QM~GRA 390 (766)
T COG1204 320 HHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIK----DTRRYDPKGG-----IVDIPVLDVLQMAGRA 390 (766)
T ss_pred cccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEe----eeEEEcCCCC-----eEECchhhHhhccCcC
Confidence 4899999999877 77999999999999999999999887772 1456877433 4569999999999999
Q ss_pred CCCC---CceEEEcc-ccc---ccccccCCCCccccccc------hHHHHHHHhhccCccchhhHhhhhccccCCccccC
Q psy6093 90 GRVQ---EGVCYHLY-SRA---REQTFQDYPLPEIQRTR------LDEVVRTLESKKFKMVSRRFKVMLNTAFTPYVWVP 156 (350)
Q Consensus 90 GR~~---~G~c~rLy-t~~---~~~~~~~~~~pEi~r~~------L~~~~L~~k~~~~~~~~~~f~~~l~~~~~p~~~~l 156 (350)
||++ -|..+.+- +.. .+........||...+. +...++.+.+.+...-..++...+..+|+-.
T Consensus 391 GRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~---- 466 (766)
T COG1204 391 GRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNP---- 466 (766)
T ss_pred CCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhh----
Confidence 9997 34444443 332 22333445555542211 2222222222221100011111122222111
Q ss_pred ccCCC-CCCHHHHHHHHHHHHHHH-ccCCC---CCCCHHHhhhccCCCchhHHHHHHHhhh
Q psy6093 157 KQVLD-PPDPASVQLSLKLLRLID-ALDDD---EHLTPLGYHLAKLPLDPQIGKMLLMASI 212 (350)
Q Consensus 157 ~~~~~-pP~~~~i~~al~~L~~lg-ald~~---~~LT~lG~~ls~Lpldp~~ak~ll~~~~ 212 (350)
+.-. --....+..+++.|.+.+ .++.. -..|++|+.+++++++|..++.+.....
T Consensus 467 -~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~ 526 (766)
T COG1204 467 -QTYGEGMLREEILASLRYLEENGLILDADWEALHATELGKLVSRLYIDPESAKIFRDLLA 526 (766)
T ss_pred -hhccccchHHHHHHHHHHHHhccceeeccccccchhHHHHHhhhccCCHHHHHHHHHHHH
Confidence 1111 124566888999999886 55543 3789999999999999999999887654
No 32
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.07 E-value=1.6e-10 Score=120.71 Aligned_cols=82 Identities=26% Similarity=0.226 Sum_probs=70.8
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+|+.++|+.+.+ .|..+|||||++++.||++|+|++||+ ||. |-|..++.
T Consensus 248 g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~--------~~~----------p~s~~~y~ 309 (591)
T TIGR01389 248 GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH--------YDM----------PGNLESYY 309 (591)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE--------cCC----------CCCHHHHh
Confidence 566778899999999998855 888999999999999999999999998 332 34677899
Q ss_pred hhhccCCCCC-CceEEEccccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRARE 106 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~~ 106 (350)
||+|||||.+ +|.|+-+|+..+.
T Consensus 310 Q~~GRaGR~G~~~~~il~~~~~d~ 333 (591)
T TIGR01389 310 QEAGRAGRDGLPAEAILLYSPADI 333 (591)
T ss_pred hhhccccCCCCCceEEEecCHHHH
Confidence 9999999987 8999999988653
No 33
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.06 E-value=1.9e-10 Score=115.58 Aligned_cols=82 Identities=23% Similarity=0.297 Sum_probs=70.7
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
+..+..+||++++++|.++++ .|..+|+|||++++.|++||+|++||+ ||. |.|...+.
T Consensus 269 ~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~--------~d~----------p~s~~~yi 330 (434)
T PRK11192 269 GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN--------FDM----------PRSADTYL 330 (434)
T ss_pred CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE--------ECC----------CCCHHHHh
Confidence 556778899999999998865 899999999999999999999999998 432 35678899
Q ss_pred hhhccCCCCC-CceEEEccccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRARE 106 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~~ 106 (350)
||.||+||.+ .|.++.+++..++
T Consensus 331 qr~GR~gR~g~~g~ai~l~~~~d~ 354 (434)
T PRK11192 331 HRIGRTGRAGRKGTAISLVEAHDH 354 (434)
T ss_pred hcccccccCCCCceEEEEecHHHH
Confidence 9999999976 7999998876554
No 34
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.05 E-value=1.4e-10 Score=120.78 Aligned_cols=81 Identities=22% Similarity=0.358 Sum_probs=70.8
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+|++.+|.++++ .|..+|+|||+++|.||+||+|++||+ ||. +.|..+|.
T Consensus 281 g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn--------yd~----------P~s~~~yv 342 (572)
T PRK04537 281 GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN--------YDL----------PFDAEDYV 342 (572)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE--------cCC----------CCCHHHHh
Confidence 567888899999999999865 899999999999999999999999997 442 46778899
Q ss_pred hhhccCCCCC-CceEEEcccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
||+||+||.+ .|.|+.++++.+
T Consensus 343 qRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 343 HRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred hhhcccccCCCCceEEEEecHHH
Confidence 9999999986 799999887643
No 35
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.05 E-value=2.3e-10 Score=120.43 Aligned_cols=81 Identities=25% Similarity=0.404 Sum_probs=68.9
Q ss_pred ccceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhh
Q psy6093 5 FQIWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLAN 81 (350)
Q Consensus 5 ~~~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~ 81 (350)
|.++.+..+||+|++++|+++++ .|..+|+|||+++|.||++|++++||. ||... -+-++
T Consensus 480 ~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi--------~~~~r---------~gls~ 542 (630)
T TIGR00643 480 FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI--------EDAER---------FGLSQ 542 (630)
T ss_pred CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE--------eCCCc---------CCHHH
Confidence 45677888999999999999965 899999999999999999999999995 44432 13467
Q ss_pred HHhhhccCCCCC-CceEEEccc
Q psy6093 82 AKQRRGRAGRVQ-EGVCYHLYS 102 (350)
Q Consensus 82 ~~QR~GRaGR~~-~G~c~rLyt 102 (350)
+.||+||+||.+ +|.||-++.
T Consensus 543 lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 543 LHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred HHHHhhhcccCCCCcEEEEEEC
Confidence 899999999976 899999884
No 36
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.04 E-value=1.6e-10 Score=116.41 Aligned_cols=195 Identities=21% Similarity=0.241 Sum_probs=125.8
Q ss_pred ceeeeccCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
|....++|||||..+|+++ |..+..-+||+|....+||++|.-.++.+| -..-..|+|-.++.
T Consensus 464 G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEs--------------LaMG~~WLs~~EF~ 529 (830)
T COG1202 464 GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFES--------------LAMGIEWLSVREFQ 529 (830)
T ss_pred CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHH--------------HHcccccCCHHHHH
Confidence 6788899999999999988 668889999999999999999975555442 23456899999999
Q ss_pred hhhccCCCCC---CceEEEcccc-ccccc-cc------------CCCCccccc---cchHHHHHHHhhccCccchhhHhh
Q psy6093 84 QRRGRAGRVQ---EGVCYHLYSR-AREQT-FQ------------DYPLPEIQR---TRLDEVVRTLESKKFKMVSRRFKV 143 (350)
Q Consensus 84 QR~GRaGR~~---~G~c~rLyt~-~~~~~-~~------------~~~~pEi~r---~~L~~~~L~~k~~~~~~~~~~f~~ 143 (350)
||.|||||+. -|+.|-|.-. ..|+. |. .-+.|-+.. .+-.+-+|. ..++.+......+
T Consensus 530 QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~i~~ 607 (830)
T COG1202 530 QMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSVIER 607 (830)
T ss_pred HHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHHHhh
Confidence 9999999986 6888877544 22432 21 111121111 111112222 1111111011100
Q ss_pred hhccccCCccccCccCCCCCCHHHHHHHHHHHHHHHccCCCC---CCCHHHhhhccCCCchhHHHHHHHhhhcCChhHHH
Q psy6093 144 MLNTAFTPYVWVPKQVLDPPDPASVQLSLKLLRLIDALDDDE---HLTPLGYHLAKLPLDPQIGKMLLMASIFSCVDPVF 220 (350)
Q Consensus 144 ~l~~~~~p~~~~l~~~~~pP~~~~i~~al~~L~~lgald~~~---~LT~lG~~ls~Lpldp~~ak~ll~~~~~~C~~~~l 220 (350)
++ +..+.+ .-....++..|.+.|+|+.+| ++|+.|+.++.--+.|.-+..|..+. ..-.+| +
T Consensus 608 -v~----------~~~~g~--~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v-~~~~~p-l 672 (830)
T COG1202 608 -VN----------SLMLGA--AFDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFLGPSEAEFIREGV-LASMDP-L 672 (830)
T ss_pred -cC----------hhhccc--cCCHHHHHHHHHhcCCeeccCCEeeeccccceeEEeecCchHHHHHHHhh-hccCCh-H
Confidence 00 000111 122568999999999999876 79999999999999999999998875 233334 3
Q ss_pred HHhhhccccccc
Q psy6093 221 TVAASLGFKDAF 232 (350)
Q Consensus 221 ~iaa~l~~~~~~ 232 (350)
-|++.+..-++.
T Consensus 673 ~i~~~l~pfE~a 684 (830)
T COG1202 673 RIAAELEPFENA 684 (830)
T ss_pred hHhhcccccccc
Confidence 444555443333
No 37
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.04 E-value=2.2e-10 Score=116.24 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=69.6
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||++++++|.++++ .|..+|+|||++++.||+||+|++||+ ||. +-+..++.
T Consensus 269 g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~--------~~~----------P~~~~~yv 330 (456)
T PRK10590 269 GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN--------YEL----------PNVPEDYV 330 (456)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE--------eCC----------CCCHHHhh
Confidence 566778899999999998855 899999999999999999999999998 443 34567899
Q ss_pred hhhccCCCCC-CceEEEcccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
||+||+||.+ .|.++-+++..+
T Consensus 331 qR~GRaGR~g~~G~ai~l~~~~d 353 (456)
T PRK10590 331 HRIGRTGRAAATGEALSLVCVDE 353 (456)
T ss_pred hhccccccCCCCeeEEEEecHHH
Confidence 9999999986 799999887654
No 38
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.01 E-value=5.6e-10 Score=84.58 Aligned_cols=69 Identities=28% Similarity=0.298 Sum_probs=59.9
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||++++++|..+++ .+..+|+++|++++.|+++|+++.||..+. +.+.+.+.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~------------------~~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL------------------PWSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC------------------CCCHHHHH
Confidence 456777899999999988865 777899999999999999999999997433 67889999
Q ss_pred hhhccCCCCC
Q psy6093 84 QRRGRAGRVQ 93 (350)
Q Consensus 84 QR~GRaGR~~ 93 (350)
||.||+||.+
T Consensus 73 Q~~gR~~R~g 82 (82)
T smart00490 73 QRIGRAGRAG 82 (82)
T ss_pred HhhcccccCC
Confidence 9999999963
No 39
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.01 E-value=1.9e-10 Score=123.07 Aligned_cols=79 Identities=22% Similarity=0.087 Sum_probs=67.8
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
+..+..+||++++++|+++.+ .|+.+++||||++|.||+||+|++||..|+ |-|.+++.
T Consensus 303 ~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~------------------P~s~~~y~ 364 (742)
T TIGR03817 303 AERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGF------------------PGTRASLW 364 (742)
T ss_pred ccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCC------------------CCCHHHHH
Confidence 345677899999999999954 999999999999999999999999998432 44778999
Q ss_pred hhhccCCCCC-CceEEEcccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSR 103 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~ 103 (350)
||+|||||.+ .|.++-+.++
T Consensus 365 qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 365 QQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred HhccccCCCCCCcEEEEEeCC
Confidence 9999999986 6888877653
No 40
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.97 E-value=6.8e-10 Score=117.90 Aligned_cols=79 Identities=24% Similarity=0.353 Sum_probs=67.5
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
.+.+..+||+|++++|+++++ .|..+|+|||+++|.||++|++++||. ||+.. -+-++..
T Consensus 505 ~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi--------~~~~r---------~gls~lh 567 (681)
T PRK10917 505 ELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI--------ENAER---------FGLAQLH 567 (681)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE--------eCCCC---------CCHHHHH
Confidence 456888899999999999965 899999999999999999999999996 54432 1246788
Q ss_pred hhhccCCCCC-CceEEEccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYS 102 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt 102 (350)
||+||+||.+ +|.||-+++
T Consensus 568 Q~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 568 QLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred HHhhcccCCCCceEEEEEEC
Confidence 9999999987 899999886
No 41
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.96 E-value=7e-10 Score=116.66 Aligned_cols=80 Identities=20% Similarity=0.332 Sum_probs=70.2
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+.++||.|++++|.++++ .|+.+|+|||++++.||+||+|.+||+ ||. |.+..+|.
T Consensus 269 g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~--------~d~----------P~~~e~yv 330 (629)
T PRK11634 269 GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN--------YDI----------PMDSESYV 330 (629)
T ss_pred CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE--------eCC----------CCCHHHHH
Confidence 567888999999999999965 899999999999999999999999997 543 34668899
Q ss_pred hhhccCCCCC-CceEEEccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
||.||+||.+ .|.++-+++..
T Consensus 331 qRiGRtGRaGr~G~ai~~v~~~ 352 (629)
T PRK11634 331 HRIGRTGRAGRAGRALLFVENR 352 (629)
T ss_pred HHhccccCCCCcceEEEEechH
Confidence 9999999987 69999988764
No 42
>KOG0333|consensus
Probab=98.89 E-value=1.3e-09 Score=109.00 Aligned_cols=81 Identities=22% Similarity=0.417 Sum_probs=71.3
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
+|.++.|||+-+++||..+++ .|.-.|+||||+|..||+||||.+||+ ||.... -..|.
T Consensus 541 g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin--------ydmaks----------ieDYt 602 (673)
T KOG0333|consen 541 GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN--------YDMAKS----------IEDYT 602 (673)
T ss_pred cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee--------cchhhh----------HHHHH
Confidence 789999999999999998865 778899999999999999999999998 766543 34566
Q ss_pred hhhccCCCCC-CceEEEcccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
.|.||+||.+ .|....+||+++
T Consensus 603 HRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 603 HRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred HHhccccccccCceeEEEeccch
Confidence 7999999987 799999999876
No 43
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.87 E-value=3.1e-09 Score=115.69 Aligned_cols=82 Identities=23% Similarity=0.293 Sum_probs=67.7
Q ss_pred cceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhH
Q psy6093 6 QIWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANA 82 (350)
Q Consensus 6 ~~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~ 82 (350)
.+..+..+||+|+.+++.++++ .|+.+|+|||+++|.||+||++.+||. +|... -+-+++
T Consensus 685 p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi--------~~a~~---------~gls~l 747 (926)
T TIGR00580 685 PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII--------ERADK---------FGLAQL 747 (926)
T ss_pred CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE--------ecCCC---------CCHHHH
Confidence 3566788899999999999855 899999999999999999999999995 33321 123467
Q ss_pred HhhhccCCCCC-CceEEEccccc
Q psy6093 83 KQRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 83 ~QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
.||+||+||.+ .|.||-++++.
T Consensus 748 ~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 748 YQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred HHHhcCCCCCCCCeEEEEEECCc
Confidence 89999999976 89999998764
No 44
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=2.4e-09 Score=110.27 Aligned_cols=80 Identities=21% Similarity=0.371 Sum_probs=69.9
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+|++++|.++++ .|..+|+|||++|..||+||+|.+||+ ||... +...|.
T Consensus 297 g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin--------yD~p~----------~~e~yv 358 (513)
T COG0513 297 GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN--------YDLPL----------DPEDYV 358 (513)
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE--------ccCCC----------CHHHhe
Confidence 688999999999999999965 899999999999999999999999998 77654 344566
Q ss_pred hhhccCCCCC-CceEEEccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
+|.||+||.+ .|..+.++++.
T Consensus 359 HRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 359 HRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred eccCccccCCCCCeEEEEeCcH
Confidence 6999999986 79999999863
No 45
>KOG0330|consensus
Probab=98.84 E-value=3.7e-09 Score=102.58 Aligned_cols=79 Identities=19% Similarity=0.311 Sum_probs=69.5
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++...+|||.|+++.|.-.|+ .|.|.|++||++|..|++||.|++||| ||-. ..-..|.
T Consensus 324 g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN--------yDiP----------~~skDYI 385 (476)
T KOG0330|consen 324 GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN--------YDIP----------THSKDYI 385 (476)
T ss_pred CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe--------cCCC----------CcHHHHH
Confidence 677788899999999887765 899999999999999999999999998 7643 4456788
Q ss_pred hhhccCCCCC-CceEEEcccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSR 103 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~ 103 (350)
.|.||.||.+ +|+.+.|.|.
T Consensus 386 HRvGRtaRaGrsG~~ItlVtq 406 (476)
T KOG0330|consen 386 HRVGRTARAGRSGKAITLVTQ 406 (476)
T ss_pred HHcccccccCCCcceEEEEeh
Confidence 8999999987 8999999888
No 46
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.83 E-value=3.2e-09 Score=117.85 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=65.2
Q ss_pred cceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhH
Q psy6093 6 QIWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANA 82 (350)
Q Consensus 6 ~~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~ 82 (350)
.+..+..+||+|+++++.+++. .|+.+|+|||+++|.|++||+|.+||- +++.. -+-+++
T Consensus 834 p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi--------~~ad~---------fglaq~ 896 (1147)
T PRK10689 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--------ERADH---------FGLAQL 896 (1147)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE--------ecCCC---------CCHHHH
Confidence 3456777899999999999955 899999999999999999999999982 11110 112468
Q ss_pred HhhhccCCCCC-CceEEEcccc
Q psy6093 83 KQRRGRAGRVQ-EGVCYHLYSR 103 (350)
Q Consensus 83 ~QR~GRaGR~~-~G~c~rLyt~ 103 (350)
.||+||+||.+ .|.||-+++.
T Consensus 897 ~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 897 HQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred HHHhhccCCCCCceEEEEEeCC
Confidence 99999999986 7999988754
No 47
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=98.78 E-value=9.9e-09 Score=102.61 Aligned_cols=72 Identities=24% Similarity=0.437 Sum_probs=63.3
Q ss_pred CCCCHHHHHHhc---cCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccCCC
Q psy6093 15 SGLKHLQNKSVF---ELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 91 (350)
Q Consensus 15 s~l~~~~q~~vf---~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR 91 (350)
.||++.+|+.+. +.|.-+|+|||.|+|-|++||++++||= |+|-. |---..||+||+||
T Consensus 407 ~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif--------YEpvp----------SeIR~IQR~GRTGR 468 (542)
T COG1111 407 KGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF--------YEPVP----------SEIRSIQRKGRTGR 468 (542)
T ss_pred cccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE--------ecCCc----------HHHHHHHhhCcccc
Confidence 689999999995 4899999999999999999999999994 77642 23346799999999
Q ss_pred CCCceEEEccccc
Q psy6093 92 VQEGVCYHLYSRA 104 (350)
Q Consensus 92 ~~~G~c~rLyt~~ 104 (350)
.++|..|-|.++.
T Consensus 469 ~r~Grv~vLvt~g 481 (542)
T COG1111 469 KRKGRVVVLVTEG 481 (542)
T ss_pred CCCCeEEEEEecC
Confidence 9999999999986
No 48
>PRK13767 ATP-dependent helicase; Provisional
Probab=98.76 E-value=4.3e-08 Score=106.96 Aligned_cols=75 Identities=28% Similarity=0.194 Sum_probs=62.8
Q ss_pred eeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHh
Q psy6093 8 WFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQ 84 (350)
Q Consensus 8 ~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~Q 84 (350)
..+..+||+|++++|..+.+ +|..+|+|||+++|.||+||+|++||. |+. |.|.+++.|
T Consensus 315 ~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~--------~~~----------P~sv~~ylQ 376 (876)
T PRK13767 315 DNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL--------LGS----------PKSVSRLLQ 376 (876)
T ss_pred cceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE--------eCC----------CCCHHHHHH
Confidence 45677799999999998854 899999999999999999999999996 332 357889999
Q ss_pred hhccCCCCC----CceEEEc
Q psy6093 85 RRGRAGRVQ----EGVCYHL 100 (350)
Q Consensus 85 R~GRaGR~~----~G~c~rL 100 (350)
|+|||||.. .|.+|..
T Consensus 377 RiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 377 RIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred hcccCCCCCCCCCcEEEEEc
Confidence 999999863 3666654
No 49
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=98.69 E-value=2.7e-08 Score=82.01 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=63.0
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
.+.+..+||+++..++..+++ .+..+|+++|+.++.|+++|+++.||-.+. +.+..+..
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~------------------~~~~~~~~ 113 (131)
T cd00079 52 GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDL------------------PWSPSSYL 113 (131)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCC------------------CCCHHHhe
Confidence 456677899999999888865 777899999999999999999999985222 57788899
Q ss_pred hhhccCCCCC-CceEEE
Q psy6093 84 QRRGRAGRVQ-EGVCYH 99 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~r 99 (350)
|+.||+||.+ .|.|+.
T Consensus 114 Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 114 QRIGRAGRAGQKGTAIL 130 (131)
T ss_pred ecccccccCCCCceEEe
Confidence 9999999998 777764
No 50
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=98.69 E-value=3.1e-08 Score=96.86 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=57.8
Q ss_pred eeeccCCCCCHHHHHHh-------ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhh
Q psy6093 9 FLQCPSSGLKHLQNKSV-------FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLAN 81 (350)
Q Consensus 9 ~~~~lHs~l~~~~q~~v-------f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~ 81 (350)
.+..+||++++.+|.++ |+.|..+|+|||+++|.|++|| +++||. | +.+-.+
T Consensus 250 ~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~--------~------------~~~~~~ 308 (358)
T TIGR01587 250 EIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMIT--------E------------LAPIDS 308 (358)
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEE--------c------------CCCHHH
Confidence 46778999999998653 4478889999999999999996 677774 2 234568
Q ss_pred HHhhhccCCCCCC-----ceEEEccccc
Q psy6093 82 AKQRRGRAGRVQE-----GVCYHLYSRA 104 (350)
Q Consensus 82 ~~QR~GRaGR~~~-----G~c~rLyt~~ 104 (350)
+.||+||+||.+. |..|-++...
T Consensus 309 ~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 309 LIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 9999999999752 3666666543
No 51
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=98.68 E-value=3.4e-08 Score=111.24 Aligned_cols=69 Identities=26% Similarity=0.295 Sum_probs=59.8
Q ss_pred eeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhh
Q psy6093 10 LQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRR 86 (350)
Q Consensus 10 ~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 86 (350)
+..+||+|+.++|.++.+ .|..||||||+.+|.||+|++|++||..| .|.|.+++.||.
T Consensus 304 a~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~g------------------sP~sVas~LQRi 365 (1490)
T PRK09751 304 ARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVA------------------TPLSVASGLQRI 365 (1490)
T ss_pred eeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeC------------------CCCCHHHHHHHh
Confidence 456799999999999954 89999999999999999999999999732 267899999999
Q ss_pred ccCCCCCCce
Q psy6093 87 GRAGRVQEGV 96 (350)
Q Consensus 87 GRaGR~~~G~ 96 (350)
|||||...|.
T Consensus 366 GRAGR~~gg~ 375 (1490)
T PRK09751 366 GRAGHQVGGV 375 (1490)
T ss_pred CCCCCCCCCc
Confidence 9999974443
No 52
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=98.67 E-value=3.3e-08 Score=101.97 Aligned_cols=81 Identities=26% Similarity=0.266 Sum_probs=72.3
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||||+.++|+.+.+ ++..+|||||+....||+-|||+|||- ||. |-|-++|-
T Consensus 254 g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH--------~~l----------P~s~EsYy 315 (590)
T COG0514 254 GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH--------YDL----------PGSIESYY 315 (590)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE--------ecC----------CCCHHHHH
Confidence 688889999999999998855 899999999999999999999999996 443 45778899
Q ss_pred hhhccCCCCC-CceEEEcccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
|-.|||||-+ |..|+-||+..+
T Consensus 316 QE~GRAGRDG~~a~aill~~~~D 338 (590)
T COG0514 316 QETGRAGRDGLPAEAILLYSPED 338 (590)
T ss_pred HHHhhccCCCCcceEEEeecccc
Confidence 9999999987 899999999866
No 53
>KOG0336|consensus
Probab=98.66 E-value=1.6e-08 Score=98.82 Aligned_cols=84 Identities=24% Similarity=0.347 Sum_probs=71.8
Q ss_pred ccceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhh
Q psy6093 5 FQIWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLAN 81 (350)
Q Consensus 5 ~~~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~ 81 (350)
+++....+|||+-.+.+|++..+ .|..+|+|||++|-.|+++|||++|++ ||-..+++ +
T Consensus 487 l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N--------yDFP~nIe----------e 548 (629)
T KOG0336|consen 487 LKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN--------YDFPRNIE----------E 548 (629)
T ss_pred hcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec--------cCCCccHH----------H
Confidence 35888999999999999998854 999999999999999999999999998 77766655 4
Q ss_pred HHhhhccCCCCC-CceEEEccccccc
Q psy6093 82 AKQRRGRAGRVQ-EGVCYHLYSRARE 106 (350)
Q Consensus 82 ~~QR~GRaGR~~-~G~c~rLyt~~~~ 106 (350)
|..|.||.||.+ .|....+++..+.
T Consensus 549 YVHRvGrtGRaGr~G~sis~lt~~D~ 574 (629)
T KOG0336|consen 549 YVHRVGRTGRAGRTGTSISFLTRNDW 574 (629)
T ss_pred HHHHhcccccCCCCcceEEEEehhhH
Confidence 556999988887 6888888888654
No 54
>KOG0328|consensus
Probab=98.61 E-value=4.5e-08 Score=91.76 Aligned_cols=81 Identities=16% Similarity=0.357 Sum_probs=71.5
Q ss_pred ceeeeccCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.|.+.||.|+++||.++ |+.|+-||+++|++-..|+++|.|..||| ||- |..+..|.
T Consensus 290 nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN--------YDL----------P~nre~YI 351 (400)
T KOG0328|consen 290 NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN--------YDL----------PNNRELYI 351 (400)
T ss_pred CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe--------cCC----------CccHHHHh
Confidence 8899999999999999999 55899999999999999999999999998 764 45567888
Q ss_pred hhhccCCCCC-CceEEEcccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
.|.||+||-+ .|..+.+...++
T Consensus 352 HRIGRSGRFGRkGvainFVk~~d 374 (400)
T KOG0328|consen 352 HRIGRSGRFGRKGVAINFVKSDD 374 (400)
T ss_pred hhhccccccCCcceEEEEecHHH
Confidence 9999999986 799888776654
No 55
>KOG0335|consensus
Probab=98.54 E-value=7.4e-08 Score=96.61 Aligned_cols=79 Identities=20% Similarity=0.398 Sum_probs=68.1
Q ss_pred ceeeeccCCCCCHHHHHHhc---cCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVF---ELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf---~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++....+||...+.||.+.. +.|+-.|+||||||+.|++||+|++||+ ||-...+. +|.
T Consensus 361 ~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn--------yDmP~d~d----------~Yv 422 (482)
T KOG0335|consen 361 GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN--------YDMPADID----------DYV 422 (482)
T ss_pred CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE--------eecCcchh----------hHH
Confidence 67788899999999998884 4889999999999999999999999998 77665444 456
Q ss_pred hhhccCCCCC-CceEEEcccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSR 103 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~ 103 (350)
.|.||+||.+ .|....++.+
T Consensus 423 HRIGRTGR~Gn~G~atsf~n~ 443 (482)
T KOG0335|consen 423 HRIGRTGRVGNGGRATSFFNE 443 (482)
T ss_pred HhccccccCCCCceeEEEecc
Confidence 6999999998 7999888873
No 56
>KOG0345|consensus
Probab=98.54 E-value=5.6e-08 Score=96.37 Aligned_cols=99 Identities=18% Similarity=0.207 Sum_probs=72.8
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
...+.++||.|...+|.++|+ .....|+++|++|..|++||||++||- |||...-+. ..
T Consensus 281 ~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ--------~DpP~~~~~----------Fv 342 (567)
T KOG0345|consen 281 KREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ--------FDPPKDPSS----------FV 342 (567)
T ss_pred CCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe--------cCCCCChhH----------HH
Confidence 345677899999999999976 556789999999999999999999996 888765444 44
Q ss_pred hhhccCCCCC-CceEEEcc--ccccccc-ccCCCCccccccchH
Q psy6093 84 QRRGRAGRVQ-EGVCYHLY--SRAREQT-FQDYPLPEIQRTRLD 123 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLy--t~~~~~~-~~~~~~pEi~r~~L~ 123 (350)
.|+||+||.+ .|..+-+. .+..|-. |.-...|++.+...+
T Consensus 343 HR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e 386 (567)
T KOG0345|consen 343 HRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTE 386 (567)
T ss_pred hhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhccc
Confidence 5888888876 56655543 3344644 444556776665544
No 57
>KOG0348|consensus
Probab=98.51 E-value=1.5e-07 Score=94.74 Aligned_cols=106 Identities=20% Similarity=0.262 Sum_probs=78.3
Q ss_pred ccceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhh
Q psy6093 5 FQIWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLAN 81 (350)
Q Consensus 5 ~~~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~ 81 (350)
|....+.-|||+|.+++|.-+|+ ...+-|++||++|..|+++|+|+.||- ||+ |-|-++
T Consensus 469 ~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd~----------P~s~ad 530 (708)
T KOG0348|consen 469 FMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ--------YDP----------PFSTAD 530 (708)
T ss_pred hhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE--------eCC----------CCCHHH
Confidence 33445666799999999999987 566789999999999999999999996 876 467788
Q ss_pred HHhhhccCCCCC-Cce--EEEcccccccccccCCCCccccccchHHHHHH
Q psy6093 82 AKQRRGRAGRVQ-EGV--CYHLYSRAREQTFQDYPLPEIQRTRLDEVVRT 128 (350)
Q Consensus 82 ~~QR~GRaGR~~-~G~--c~rLyt~~~~~~~~~~~~pEi~r~~L~~~~L~ 128 (350)
|..|.||+.|.+ .|. -|-+-++.+|...-+...+-++..++..+...
T Consensus 531 ylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~l~q~~~~~~l~~ 580 (708)
T KOG0348|consen 531 YLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIMLLQFDMEILLPA 580 (708)
T ss_pred HHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcchhhccchhhhhhh
Confidence 999999977765 344 55555666675544444444666666554443
No 58
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.49 E-value=2.3e-07 Score=98.09 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=69.1
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+++..+|.++++ .|...|+||||+++.|+++|++++||. +|... ...+-|..++.
T Consensus 466 gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi--------~Dadi-----fG~p~~~~~~i 532 (655)
T TIGR00631 466 GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI--------LDADK-----EGFLRSERSLI 532 (655)
T ss_pred ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEE--------eCccc-----ccCCCCHHHHH
Confidence 566777899999999998865 889999999999999999999999986 33211 11234667899
Q ss_pred hhhccCCCCCCceEEEccccc
Q psy6093 84 QRRGRAGRVQEGVCYHLYSRA 104 (350)
Q Consensus 84 QR~GRaGR~~~G~c~rLyt~~ 104 (350)
||.|||||..+|.++-+.+..
T Consensus 533 qriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 533 QTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred HHhcCCCCCCCCEEEEEEcCC
Confidence 999999999999998776653
No 59
>KOG0332|consensus
Probab=98.48 E-value=2.7e-07 Score=89.39 Aligned_cols=86 Identities=21% Similarity=0.304 Sum_probs=70.5
Q ss_pred ceeeeccCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
|+-|.++||.|..++|..+ |+.|.-||+++||+...|++++.|..||| ||-.. ....--.-+.|.
T Consensus 354 Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN--------ydlP~----~~~~~pD~etYl 421 (477)
T KOG0332|consen 354 GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN--------YDLPV----KYTGEPDYETYL 421 (477)
T ss_pred CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe--------cCCcc----ccCCCCCHHHHH
Confidence 7788999999999999988 55999999999999999999999999998 44322 112224556788
Q ss_pred hhhccCCCCC-CceEEEccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
.|.||+||-+ .|..|.+....
T Consensus 422 HRiGRtGRFGkkG~a~n~v~~~ 443 (477)
T KOG0332|consen 422 HRIGRTGRFGKKGLAINLVDDK 443 (477)
T ss_pred HHhcccccccccceEEEeeccc
Confidence 9999999987 79999876553
No 60
>PRK13766 Hef nuclease; Provisional
Probab=98.48 E-value=2.2e-07 Score=100.18 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=62.2
Q ss_pred CCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccCCC
Q psy6093 15 SGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 91 (350)
Q Consensus 15 s~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR 91 (350)
++++..+|+++.+ .|..+|++||++++.|+++|++++||. ||+. .|-..+.||+||+||
T Consensus 405 ~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~--------yd~~----------~s~~r~iQR~GR~gR 466 (773)
T PRK13766 405 KGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF--------YEPV----------PSEIRSIQRKGRTGR 466 (773)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------eCCC----------CCHHHHHHHhcccCc
Confidence 3599999888854 788999999999999999999999996 7763 355578999999999
Q ss_pred CCCceEEEccccc
Q psy6093 92 VQEGVCYHLYSRA 104 (350)
Q Consensus 92 ~~~G~c~rLyt~~ 104 (350)
.++|.+|.|+++.
T Consensus 467 ~~~~~v~~l~~~~ 479 (773)
T PRK13766 467 QEEGRVVVLIAKG 479 (773)
T ss_pred CCCCEEEEEEeCC
Confidence 9999999998764
No 61
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.47 E-value=3.1e-07 Score=98.54 Aligned_cols=108 Identities=17% Similarity=0.176 Sum_probs=71.8
Q ss_pred eccCCCCCHHHHH-----Hhcc---C----CC-------ceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccc
Q psy6093 11 QCPSSGLKHLQNK-----SVFE---L----GV-------RKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIAT 71 (350)
Q Consensus 11 ~~lHs~l~~~~q~-----~vf~---~----g~-------rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~ 71 (350)
..+||.|++.+|+ ++++ + |. .+|+|||+++|.||+|+. ++||. ++
T Consensus 298 ~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~--------d~------- 361 (844)
T TIGR02621 298 ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVC--------DL------- 361 (844)
T ss_pred eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEE--------CC-------
Confidence 6679999999998 5543 4 43 689999999999999997 66663 11
Q ss_pred cccccccHhhHHhhhccCCCCCC-c-eEEEcccccc--cccccCCCCccccccchHHHHHHHhhccCccchhhH
Q psy6093 72 LKPEWISLANAKQRRGRAGRVQE-G-VCYHLYSRAR--EQTFQDYPLPEIQRTRLDEVVRTLESKKFKMVSRRF 141 (350)
Q Consensus 72 l~~~~iSka~~~QR~GRaGR~~~-G-~c~rLyt~~~--~~~~~~~~~pEi~r~~L~~~~L~~k~~~~~~~~~~f 141 (350)
.+.+++.||.||+||.+. | ..+.+++... .... .-..||+++..+..+.+..+..+..+. ..|
T Consensus 362 -----aP~esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~~~~-~vY~~~~l~~t~~~L~~~~~~~~~~~~-~al 428 (844)
T TIGR02621 362 -----APFESMQQRFGRVNRFGELQACQIAVVHLDLGKDQDF-DVYGKKIDKSTWSTLKKLQQLKGKNKR-AAL 428 (844)
T ss_pred -----CCHHHHHHHhcccCCCCCCCCceEEEEeeccCCCccc-CCCCHHHHHHHHHHHHHHHhccccCCH-HHH
Confidence 224789999999999863 2 2233332211 1111 122478888777777776666665555 555
No 62
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.43 E-value=4.1e-07 Score=96.36 Aligned_cols=84 Identities=18% Similarity=0.189 Sum_probs=68.6
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+++..+|.++++ +|...|+|||++++.|+++|++++||.+ |... -..+-+..++.
T Consensus 470 gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~--------d~ei-----fG~~~~~~~yi 536 (652)
T PRK05298 470 GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAIL--------DADK-----EGFLRSERSLI 536 (652)
T ss_pred ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEe--------CCcc-----cccCCCHHHHH
Confidence 556777899999999998865 8889999999999999999999999963 2210 01234677899
Q ss_pred hhhccCCCCCCceEEEcccc
Q psy6093 84 QRRGRAGRVQEGVCYHLYSR 103 (350)
Q Consensus 84 QR~GRaGR~~~G~c~rLyt~ 103 (350)
||.||+||...|.|+.+.+.
T Consensus 537 qr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 537 QTIGRAARNVNGKVILYADK 556 (652)
T ss_pred HHhccccCCCCCEEEEEecC
Confidence 99999999999999988774
No 63
>KOG0354|consensus
Probab=98.43 E-value=2.3e-07 Score=97.38 Aligned_cols=71 Identities=31% Similarity=0.530 Sum_probs=61.3
Q ss_pred CCCCHHHHHHhc---cCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccCCC
Q psy6093 15 SGLKHLQNKSVF---ELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 91 (350)
Q Consensus 15 s~l~~~~q~~vf---~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR 91 (350)
.||++.+|+.+. +.|..+|+|||.|||-|++|+.+..||= ||..++- | .-.||+|| ||
T Consensus 456 ~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc--------Yd~~snp-------I---rmIQrrGR-gR 516 (746)
T KOG0354|consen 456 TGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVIC--------YDYSSNP-------I---RMVQRRGR-GR 516 (746)
T ss_pred cccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEE--------ecCCccH-------H---HHHHHhcc-cc
Confidence 489999999995 4999999999999999999999999994 8776541 1 24699999 99
Q ss_pred CCCceEEEccccc
Q psy6093 92 VQEGVCYHLYSRA 104 (350)
Q Consensus 92 ~~~G~c~rLyt~~ 104 (350)
.+.|.|+-|++..
T Consensus 517 a~ns~~vll~t~~ 529 (746)
T KOG0354|consen 517 ARNSKCVLLTTGS 529 (746)
T ss_pred ccCCeEEEEEcch
Confidence 9999999999953
No 64
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.41 E-value=3.9e-07 Score=95.60 Aligned_cols=80 Identities=21% Similarity=0.125 Sum_probs=62.7
Q ss_pred ceeeeccCCCCCHHHHHHhcc-CCCceEEEecCccccCCCCC---Ccc-----EEEeCCCcceeeeecCCCccccccccc
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE-LGVRKIVLATNIAETSITID---DIV-----YVVDCGKTKMSNFDVKDNIATLKPEWI 77 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~-~g~rkvIlaTniaEtsvtip---~v~-----~VID~G~~k~~~yd~~~~~~~l~~~~i 77 (350)
++.+..+||..+..++..+-. .+..+|+||||+|..|++|+ +|. +||.+ | .|-
T Consensus 497 gi~~~~Lhg~~~~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~--------d----------~P~ 558 (656)
T PRK12898 497 GLPHQVLNAKQDAEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILT--------E----------RHD 558 (656)
T ss_pred CCCEEEeeCCcHHHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEc--------C----------CCC
Confidence 778888999976665554433 44457999999999999999 776 99973 2 234
Q ss_pred cHhhHHhhhccCCCCC-CceEEEccccc
Q psy6093 78 SLANAKQRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 78 Ska~~~QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
|...+.||.||+||.+ ||.|+-+++.+
T Consensus 559 s~r~y~hr~GRTGRqG~~G~s~~~is~e 586 (656)
T PRK12898 559 SARIDRQLAGRCGRQGDPGSYEAILSLE 586 (656)
T ss_pred CHHHHHHhcccccCCCCCeEEEEEechh
Confidence 5667889999999998 89999888764
No 65
>KOG0338|consensus
Probab=98.37 E-value=3.4e-07 Score=91.75 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=69.1
Q ss_pred ceeeeccCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+|++++|-.. |+.+...|++||++|..|++|+||..||| |+ .|.+...|.
T Consensus 450 gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN--------y~----------mP~t~e~Y~ 511 (691)
T KOG0338|consen 450 GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN--------YA----------MPKTIEHYL 511 (691)
T ss_pred hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe--------cc----------CchhHHHHH
Confidence 6778889999999998877 44788899999999999999999999998 43 467778888
Q ss_pred hhhccCCCCC-CceEEEcccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
.|.||+.|.+ .|..+.|..+.+
T Consensus 512 HRVGRTARAGRaGrsVtlvgE~d 534 (691)
T KOG0338|consen 512 HRVGRTARAGRAGRSVTLVGESD 534 (691)
T ss_pred HHhhhhhhcccCcceEEEecccc
Confidence 9999988876 788888888764
No 66
>KOG0340|consensus
Probab=98.37 E-value=3.7e-07 Score=87.96 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=61.4
Q ss_pred ceeeeccCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
.+-++++||.||+.+|-.. |+.+.-+|++||++|..|++||.|..|||-.+.+. --.|.
T Consensus 278 e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~------------------P~~yi 339 (442)
T KOG0340|consen 278 EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRD------------------PKDYI 339 (442)
T ss_pred ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCC------------------HHHHH
Confidence 4567889999999998877 55888999999999999999999999998333222 23466
Q ss_pred hhhccCCCCC-CceEEEcccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSR 103 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~ 103 (350)
.|.||..|.+ .|..+.++++
T Consensus 340 HRvGRtARAGR~G~aiSivt~ 360 (442)
T KOG0340|consen 340 HRVGRTARAGRKGMAISIVTQ 360 (442)
T ss_pred HhhcchhcccCCcceEEEech
Confidence 7888866655 5777776664
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=98.37 E-value=6.2e-07 Score=95.94 Aligned_cols=80 Identities=20% Similarity=0.131 Sum_probs=65.0
Q ss_pred ceeeeccCCCCCHHHHHHhcc-CCCceEEEecCccccCCCC---CCcc-----EEEeCCCcceeeeecCCCccccccccc
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE-LGVRKIVLATNIAETSITI---DDIV-----YVVDCGKTKMSNFDVKDNIATLKPEWI 77 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~-~g~rkvIlaTniaEtsvti---p~v~-----~VID~G~~k~~~yd~~~~~~~l~~~~i 77 (350)
++.+..+||.+...++..+.. ....+|+||||+|..|++| |+|. +||.+ | .|-
T Consensus 452 gi~~~~L~~~~~~~e~~~i~~ag~~g~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~--------d----------~p~ 513 (790)
T PRK09200 452 GIPHNLLNAKNAAKEAQIIAEAGQKGAVTVATNMAGRGTDIKLGEGVHELGGLAVIGT--------E----------RME 513 (790)
T ss_pred CCCEEEecCCccHHHHHHHHHcCCCCeEEEEccchhcCcCCCcccccccccCcEEEec--------c----------CCC
Confidence 677888999998888776655 2233799999999999999 7998 99973 2 235
Q ss_pred cHhhHHhhhccCCCCC-CceEEEccccc
Q psy6093 78 SLANAKQRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 78 Ska~~~QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
|...+.||.||+||.+ ||.++-+.+.+
T Consensus 514 s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 514 SRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred CHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 6677899999999998 89999888764
No 68
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.35 E-value=4.3e-07 Score=93.36 Aligned_cols=72 Identities=18% Similarity=0.079 Sum_probs=59.9
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEec-CccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLAT-NIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANA 82 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaT-niaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~ 82 (350)
+..+..+||+++.++|+++.+ .|..+|+||| +++..|+++|+++.||- ++|. -|+..+
T Consensus 368 g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl--------~~p~----------~s~~~~ 429 (501)
T PHA02558 368 YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF--------AHPS----------KSKIIV 429 (501)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE--------ecCC----------cchhhh
Confidence 567788899999999988754 6777899998 89999999999999994 2221 367788
Q ss_pred HhhhccCCCCCCce
Q psy6093 83 KQRRGRAGRVQEGV 96 (350)
Q Consensus 83 ~QR~GRaGR~~~G~ 96 (350)
.||.||+||..+|+
T Consensus 430 ~QriGR~~R~~~~K 443 (501)
T PHA02558 430 LQSIGRVLRKHGSK 443 (501)
T ss_pred hhhhhccccCCCCC
Confidence 99999999998775
No 69
>KOG0342|consensus
Probab=98.34 E-value=6.9e-07 Score=89.15 Aligned_cols=79 Identities=23% Similarity=0.259 Sum_probs=65.9
Q ss_pred eeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHh
Q psy6093 8 WFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQ 84 (350)
Q Consensus 8 ~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~Q 84 (350)
+.|..+||+.++..|..+|. ....-|+||||+|..|+++|+|+-||- ||+.. -..+|..
T Consensus 355 lpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ--------~~~P~----------d~~~YIH 416 (543)
T KOG0342|consen 355 LPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ--------YDPPS----------DPEQYIH 416 (543)
T ss_pred CchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE--------eCCCC----------CHHHHHH
Confidence 45667799999999999975 667789999999999999999999996 66654 3567889
Q ss_pred hhccCCCCC-CceEEEccccc
Q psy6093 85 RRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 85 R~GRaGR~~-~G~c~rLyt~~ 104 (350)
|.||+||.+ .|+.+-+..+.
T Consensus 417 RvGRTaR~gk~G~alL~l~p~ 437 (543)
T KOG0342|consen 417 RVGRTAREGKEGKALLLLAPW 437 (543)
T ss_pred HhccccccCCCceEEEEeChh
Confidence 999999976 68888766553
No 70
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.34 E-value=7e-07 Score=92.64 Aligned_cols=85 Identities=25% Similarity=0.379 Sum_probs=71.0
Q ss_pred ccccceeeeccCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccH
Q psy6093 3 IFFQIWFLQCPSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISL 79 (350)
Q Consensus 3 ~~~~~~~~~~lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSk 79 (350)
.+|+.+.+..+||.|+++|.+.| |+.|...|+|||.+.|-||++|+.+..|- +|+.+ -.-
T Consensus 503 ~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI--------e~AER---------FGL 565 (677)
T COG1200 503 SFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI--------ENAER---------FGL 565 (677)
T ss_pred HHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE--------echhh---------hhH
Confidence 36778889899999999999888 55889999999999999999999998773 55543 234
Q ss_pred hhHHhhhccCCCCC-CceEEEccccc
Q psy6093 80 ANAKQRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 80 a~~~QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
|+..|-+||.||.. ++.|+-+|...
T Consensus 566 aQLHQLRGRVGRG~~qSyC~Ll~~~~ 591 (677)
T COG1200 566 AQLHQLRGRVGRGDLQSYCVLLYKPP 591 (677)
T ss_pred HHHHHhccccCCCCcceEEEEEeCCC
Confidence 56689999999987 78999988764
No 71
>KOG0951|consensus
Probab=98.28 E-value=5e-06 Score=90.61 Aligned_cols=184 Identities=18% Similarity=0.117 Sum_probs=111.3
Q ss_pred cCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccC
Q psy6093 13 PSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRA 89 (350)
Q Consensus 13 lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRa 89 (350)
.|+||...+|..+ |..|.++|.++|...+-||++|+-+++| ....+|||..|.- ..+|.-+-.||.|||
T Consensus 613 HhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtVii----kgtqvy~pekg~w----~elsp~dv~qmlgra 684 (1674)
T KOG0951|consen 613 HHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVII----KGTQVYDPEKGRW----TELSPLDVMQMLGRA 684 (1674)
T ss_pred eccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEe----cCccccCcccCcc----ccCCHHHHHHHHhhc
Confidence 3899999998766 6699999999999999999999977766 2356799988732 347888999999999
Q ss_pred CCCC-----CceEEEccccc-cccc-ccCCCCcccccc-chHHHHHHHhhccCccchhhHhhhhccccCCccccCc----
Q psy6093 90 GRVQ-----EGVCYHLYSRA-REQT-FQDYPLPEIQRT-RLDEVVRTLESKKFKMVSRRFKVMLNTAFTPYVWVPK---- 157 (350)
Q Consensus 90 GR~~-----~G~c~rLyt~~-~~~~-~~~~~~pEi~r~-~L~~~~L~~k~~~~~~~~~~f~~~l~~~~~p~~~~l~---- 157 (350)
||++ .|+...=+++- .|-. |.+.-+-|-+.. .|.+-+=.=+.+|+... .+=+.-+..||+..+-+-.
T Consensus 685 grp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~-~d~~~wl~yTylyvRm~~~p~ly 763 (1674)
T KOG0951|consen 685 GRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSA-RDAVDWLGYTYLYVRMVRNPTLY 763 (1674)
T ss_pred CCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhH-HHHHhhhcceeeEEeeccCchhc
Confidence 9986 34444434442 2322 333322232221 12221112223343222 2211123334322100000
Q ss_pred ----cCCCCCC----HHHHHHHHHHHHHHHccCCC-----CCCCHHHhhhccCCCchhHHH
Q psy6093 158 ----QVLDPPD----PASVQLSLKLLRLIDALDDD-----EHLTPLGYHLAKLPLDPQIGK 205 (350)
Q Consensus 158 ----~~~~pP~----~~~i~~al~~L~~lgald~~-----~~LT~lG~~ls~Lpldp~~ak 205 (350)
...|++- .+.+..|...|.+.|.|--+ -+.|.+|+.-+..++.-....
T Consensus 764 ~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~ 824 (1674)
T KOG0951|consen 764 GVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMA 824 (1674)
T ss_pred cCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHH
Confidence 1112221 14477888888888888643 278999999999998654433
No 72
>KOG0344|consensus
Probab=98.26 E-value=1.2e-06 Score=88.96 Aligned_cols=83 Identities=18% Similarity=0.294 Sum_probs=70.9
Q ss_pred ccceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhh
Q psy6093 5 FQIWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLAN 81 (350)
Q Consensus 5 ~~~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~ 81 (350)
|++-.+--+||..++.++.++.+ .|+..|++||++.++|+++.||..||+ ||- +-|.-+
T Consensus 410 ~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn--------yD~----------p~s~~s 471 (593)
T KOG0344|consen 410 YDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN--------YDF----------PQSDLS 471 (593)
T ss_pred ccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe--------cCC----------CchhHH
Confidence 44455666799999999998854 899999999999999999999999998 664 356667
Q ss_pred HHhhhccCCCCC-CceEEEcccccc
Q psy6093 82 AKQRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 82 ~~QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
+..|.||.||.+ +|+.|.+||+++
T Consensus 472 yihrIGRtgRag~~g~Aitfytd~d 496 (593)
T KOG0344|consen 472 YIHRIGRTGRAGRSGKAITFYTDQD 496 (593)
T ss_pred HHHHhhccCCCCCCcceEEEecccc
Confidence 888999999987 799999999944
No 73
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=98.24 E-value=1.6e-06 Score=92.14 Aligned_cols=79 Identities=19% Similarity=0.169 Sum_probs=62.6
Q ss_pred ceeeeccCCCCCHHHHHHhccCC-CceEEEecCccccCCCCC---------CccEEEeCCCcceeeeecCCCcccccccc
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFELG-VRKIVLATNIAETSITID---------DIVYVVDCGKTKMSNFDVKDNIATLKPEW 76 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~~g-~rkvIlaTniaEtsvtip---------~v~~VID~G~~k~~~yd~~~~~~~l~~~~ 76 (350)
++....+||.+...++..+.+.| .-+|.||||+|..|++|| |+.+|+. |++.+
T Consensus 448 gi~~~~L~a~~~~~E~~ii~~ag~~g~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit--------~~~ps--------- 510 (762)
T TIGR03714 448 GIPHNLLNAQNAAKEAQIIAEAGQKGAVTVATSMAGRGTDIKLGKGVAELGGLAVIGT--------ERMEN--------- 510 (762)
T ss_pred CCCEEEecCCChHHHHHHHHHcCCCCeEEEEccccccccCCCCCccccccCCeEEEEe--------cCCCC---------
Confidence 66777789999988887776632 238999999999999999 8889886 54432
Q ss_pred ccHhhHHhhhccCCCCC-CceEEEccccc
Q psy6093 77 ISLANAKQRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 77 iSka~~~QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
.+.. .||+||+||.+ ||.++-+.+.+
T Consensus 511 -~rid-~qr~GRtGRqG~~G~s~~~is~e 537 (762)
T TIGR03714 511 -SRVD-LQLRGRSGRQGDPGSSQFFVSLE 537 (762)
T ss_pred -cHHH-HHhhhcccCCCCceeEEEEEccc
Confidence 2233 89999999998 89998887764
No 74
>KOG0339|consensus
Probab=98.19 E-value=1e-06 Score=88.26 Aligned_cols=83 Identities=24% Similarity=0.416 Sum_probs=71.4
Q ss_pred ccceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhh
Q psy6093 5 FQIWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLAN 81 (350)
Q Consensus 5 ~~~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~ 81 (350)
..++.|..+|+.+.+.+|.+++. .+...|++||++|..+++||+++.||+ ||....++.
T Consensus 490 lk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn--------yD~ardIdt---------- 551 (731)
T KOG0339|consen 490 LKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN--------YDFARDIDT---------- 551 (731)
T ss_pred cccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec--------ccccchhHH----------
Confidence 45788999999999999999964 566679999999999999999999998 777666554
Q ss_pred HHhhhccCCCCC-CceEEEcccccc
Q psy6093 82 AKQRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 82 ~~QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
..||.||.||.+ .|..|.|.|+.+
T Consensus 552 hthrigrtgRag~kGvayTlvTeKD 576 (731)
T KOG0339|consen 552 HTHRIGRTGRAGEKGVAYTLVTEKD 576 (731)
T ss_pred HHHHhhhcccccccceeeEEechhh
Confidence 457999999988 599999999864
No 75
>KOG0341|consensus
Probab=98.19 E-value=7.9e-07 Score=86.61 Aligned_cols=81 Identities=21% Similarity=0.391 Sum_probs=67.5
Q ss_pred cceeeeccCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhH
Q psy6093 6 QIWFLQCPSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANA 82 (350)
Q Consensus 6 ~~~~~~~lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~ 82 (350)
.++.++.+|||-.+++|... |+.|+..|+|||++|--|+++|+|.+||| ||.... -.+|
T Consensus 444 KGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN--------yDMP~e----------IENY 505 (610)
T KOG0341|consen 444 KGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN--------YDMPEE----------IENY 505 (610)
T ss_pred ccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc--------CCChHH----------HHHH
Confidence 47788899999999999877 55899999999999999999999999998 765443 4567
Q ss_pred HhhhccCCCCC-CceEEEccccc
Q psy6093 83 KQRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 83 ~QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
..|.||+||.+ .|..-.+.++.
T Consensus 506 VHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 506 VHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred HHHhcccCCCCCcceeeeeeccc
Confidence 77999999987 57766655553
No 76
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.18 E-value=2.4e-06 Score=90.69 Aligned_cols=76 Identities=17% Similarity=0.259 Sum_probs=61.8
Q ss_pred ccCCCCCHHHHHHhcc---C-CCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhc
Q psy6093 12 CPSSGLKHLQNKSVFE---L-GVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRG 87 (350)
Q Consensus 12 ~lHs~l~~~~q~~vf~---~-g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~G 87 (350)
.+||.++..+|+++++ . +..+++|+|+++.+|+++|++.+||. +++. +-|+.++.||.|
T Consensus 520 ~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~--------~s~~---------~gS~~q~iQRlG 582 (732)
T TIGR00603 520 FIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ--------ISSH---------YGSRRQEAQRLG 582 (732)
T ss_pred eEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE--------eCCC---------CCCHHHHHHHhc
Confidence 3699999999999976 3 46799999999999999999999995 3221 248899999999
Q ss_pred cCCCCCCc-eE-------EEccccc
Q psy6093 88 RAGRVQEG-VC-------YHLYSRA 104 (350)
Q Consensus 88 RaGR~~~G-~c-------~rLyt~~ 104 (350)
|++|.++| .+ |.|.++.
T Consensus 583 RilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 583 RILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred ccccCCCCCccccccceEEEEecCC
Confidence 99999864 33 6777664
No 77
>KOG0351|consensus
Probab=98.04 E-value=4.9e-06 Score=90.54 Aligned_cols=84 Identities=24% Similarity=0.251 Sum_probs=70.9
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++....+|+||++.+|+.|-+ .++.+||+||=....||+-|||++||-.++.| |-..|-
T Consensus 509 ~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPk------------------s~E~YY 570 (941)
T KOG0351|consen 509 GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPK------------------SFEGYY 570 (941)
T ss_pred chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCch------------------hHHHHH
Confidence 567778899999999998854 88899999999999999999999999755533 456778
Q ss_pred hhhccCCCCC-CceEEEccccccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAREQT 108 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~~~~ 108 (350)
|-+|||||-+ +-.|.-+|+-.++..
T Consensus 571 QE~GRAGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 571 QEAGRAGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred HhccccCcCCCcceeEEecchhHHHH
Confidence 9999999987 889999988765543
No 78
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.03 E-value=8.4e-06 Score=89.23 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=65.4
Q ss_pred ceeeeccCCCCCHHHHHHhcc-----CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhh
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE-----LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLAN 81 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~-----~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~ 81 (350)
++.+..+||+|+..+|+++.+ +|.-+|+|||+++..|++++.+.+||+ ||. |-+-..
T Consensus 518 Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn--------fDl----------P~nP~~ 579 (956)
T PRK04914 518 GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL--------FDL----------PFNPDL 579 (956)
T ss_pred CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEE--------ecC----------CCCHHH
Confidence 678888999999999998854 356899999999999999999999997 554 455677
Q ss_pred HHhhhccCCCCC---CceEEEccccc
Q psy6093 82 AKQRRGRAGRVQ---EGVCYHLYSRA 104 (350)
Q Consensus 82 ~~QR~GRaGR~~---~G~c~rLyt~~ 104 (350)
+.||.||+||-+ +-..|.++.+.
T Consensus 580 ~eQRIGR~~RiGQ~~~V~i~~~~~~~ 605 (956)
T PRK04914 580 LEQRIGRLDRIGQKHDIQIHVPYLEG 605 (956)
T ss_pred HHHHhcccccCCCCceEEEEEccCCC
Confidence 899999999965 34566666664
No 79
>KOG0326|consensus
Probab=97.96 E-value=3.6e-06 Score=80.35 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=67.8
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
|+..--+||.|.++.|.+||. .|.-|.+|||+..-.||+|+.|.+|||+.+.| +-.+|.
T Consensus 346 GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk------------------~aEtYL 407 (459)
T KOG0326|consen 346 GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK------------------NAETYL 407 (459)
T ss_pred cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC------------------CHHHHH
Confidence 444445599999999999987 89999999999999999999999999954433 234677
Q ss_pred hhhccCCCCC-CceEEEcccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
.|.||+||-+ .|..+.|.|-++
T Consensus 408 HRIGRsGRFGhlGlAInLityed 430 (459)
T KOG0326|consen 408 HRIGRSGRFGHLGLAINLITYED 430 (459)
T ss_pred HHccCCccCCCcceEEEEEehhh
Confidence 8999999988 899999987643
No 80
>KOG0343|consensus
Probab=97.95 E-value=8.5e-06 Score=82.62 Aligned_cols=81 Identities=14% Similarity=0.199 Sum_probs=68.6
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
+..+.+|||+|.+..|-.||. ....-|++||+++..|+++|.|+.||- || +|...++|.
T Consensus 339 g~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ--------~D----------CPedv~tYI 400 (758)
T KOG0343|consen 339 GIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ--------VD----------CPEDVDTYI 400 (758)
T ss_pred CCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEE--------ec----------CchhHHHHH
Confidence 778889999999999999987 445579999999999999999999994 32 456677888
Q ss_pred hhhccCCCCC-CceEEEcccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
.|+||..|.. .|.|+-+.++..
T Consensus 401 HRvGRtAR~~~~G~sll~L~psE 423 (758)
T KOG0343|consen 401 HRVGRTARYKERGESLLMLTPSE 423 (758)
T ss_pred HHhhhhhcccCCCceEEEEcchh
Confidence 9999999987 799998777644
No 81
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=97.94 E-value=1.3e-05 Score=85.60 Aligned_cols=80 Identities=19% Similarity=0.121 Sum_probs=62.2
Q ss_pred ceeeeccCCCCCHHHHHHhcc-CCCceEEEecCccccCCCC---CCcc-----EEEeCCCcceeeeecCCCccccccccc
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE-LGVRKIVLATNIAETSITI---DDIV-----YVVDCGKTKMSNFDVKDNIATLKPEWI 77 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~-~g~rkvIlaTniaEtsvti---p~v~-----~VID~G~~k~~~yd~~~~~~~l~~~~i 77 (350)
+.....+|+.....|...+-+ ...-.|.||||+|..|.+| ++|. +||.+- .+-
T Consensus 464 gi~~~~Lna~~~~~Ea~ii~~ag~~g~VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te------------------~pe 525 (796)
T PRK12906 464 GIPHAVLNAKNHAKEAEIIMNAGQRGAVTIATNMAGRGTDIKLGPGVKELGGLAVIGTE------------------RHE 525 (796)
T ss_pred CCCeeEecCCcHHHHHHHHHhcCCCceEEEEeccccCCCCCCCCcchhhhCCcEEEeee------------------cCC
Confidence 556677899988777776644 2223599999999999999 4899 999732 245
Q ss_pred cHhhHHhhhccCCCCC-CceEEEccccc
Q psy6093 78 SLANAKQRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 78 Ska~~~QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
|+....||.||+||.+ ||.+.-+.+-+
T Consensus 526 s~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 526 SRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred cHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 6777899999999998 89987776664
No 82
>KOG0350|consensus
Probab=97.93 E-value=6.5e-06 Score=82.53 Aligned_cols=81 Identities=17% Similarity=0.292 Sum_probs=68.6
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
+..+-++-|+|+...+.+..+ .|...|++|+++...|+++.||+.||+ ||+. .|--+|.
T Consensus 457 ~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN--------Yd~P----------~~~ktyV 518 (620)
T KOG0350|consen 457 NFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN--------YDPP----------ASDKTYV 518 (620)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee--------cCCC----------chhhHHH
Confidence 455666778999999888854 899999999999999999999999998 8875 4455677
Q ss_pred hhhccCCCCC-CceEEEcccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
.|+||+||.+ .|.||.|.+++.
T Consensus 519 HR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 519 HRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred HhhcccccccCCceEEEeecccc
Confidence 7999999987 799999988754
No 83
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=97.92 E-value=1.2e-05 Score=79.22 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=47.5
Q ss_pred eeeeccCCCCCHHHHHHhccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhc
Q psy6093 8 WFLQCPSSGLKHLQNKSVFELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRG 87 (350)
Q Consensus 8 ~~~~~lHs~l~~~~q~~vf~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~G 87 (350)
+.+..+||.++.++|.++. ...|+|||+++|.||+||++ +|| ++ +.+.+++.||.|
T Consensus 299 ~~~~~l~g~~~~~~R~~~~---~~~iLVaTdv~~rGiDi~~~-~vi---------~~-----------p~~~~~yiqR~G 354 (357)
T TIGR03158 299 DDIGRITGFAPKKDRERAM---QFDILLGTSTVDVGVDFKRD-WLI---------FS-----------ARDAAAFWQRLG 354 (357)
T ss_pred ceEEeeecCCCHHHHHHhc---cCCEEEEecHHhcccCCCCc-eEE---------EC-----------CCCHHHHhhhcc
Confidence 4566789999999987764 45799999999999999987 555 21 245678999999
Q ss_pred cCC
Q psy6093 88 RAG 90 (350)
Q Consensus 88 RaG 90 (350)
|+|
T Consensus 355 R~g 357 (357)
T TIGR03158 355 RLG 357 (357)
T ss_pred cCC
Confidence 998
No 84
>KOG0347|consensus
Probab=97.85 E-value=1.5e-05 Score=80.92 Aligned_cols=75 Identities=21% Similarity=0.299 Sum_probs=58.0
Q ss_pred ccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhcc
Q psy6093 12 CPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGR 88 (350)
Q Consensus 12 ~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GR 88 (350)
+||+.|-+.+|-+-++ ...--|++||++|..|++||+|.+||. |......+ -|..|.||
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH--------YqVPrtse----------iYVHRSGR 553 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH--------YQVPRTSE----------IYVHRSGR 553 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE--------eecCCccc----------eeEecccc
Confidence 4599999988877754 555679999999999999999999996 54433333 34459999
Q ss_pred CCCCC-CceEEEccccc
Q psy6093 89 AGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 89 aGR~~-~G~c~rLyt~~ 104 (350)
+.|.. .|...-|....
T Consensus 554 TARA~~~Gvsvml~~P~ 570 (731)
T KOG0347|consen 554 TARANSEGVSVMLCGPQ 570 (731)
T ss_pred cccccCCCeEEEEeChH
Confidence 99976 68887776553
No 85
>PRK09694 helicase Cas3; Provisional
Probab=97.84 E-value=1.9e-05 Score=85.87 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=50.1
Q ss_pred eeeeccCCCCCHHHHH----Hh---c-cCCC---ceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCcccccccc
Q psy6093 8 WFLQCPSSGLKHLQNK----SV---F-ELGV---RKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEW 76 (350)
Q Consensus 8 ~~~~~lHs~l~~~~q~----~v---f-~~g~---rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~ 76 (350)
..+..+||.+++.+|+ ++ | +.|+ ++|+|||+|+|.||+| +++++|. .-
T Consensus 588 ~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlIt--------------------dl 646 (878)
T PRK09694 588 VDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLIT--------------------QL 646 (878)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEE--------------------CC
Confidence 3577789999999984 34 4 2454 4799999999999999 5788873 01
Q ss_pred ccHhhHHhhhccCCCCC
Q psy6093 77 ISLANAKQRRGRAGRVQ 93 (350)
Q Consensus 77 iSka~~~QR~GRaGR~~ 93 (350)
++..+..||+||+||.+
T Consensus 647 aPidsLiQRaGR~~R~~ 663 (878)
T PRK09694 647 CPVDLLFQRLGRLHRHH 663 (878)
T ss_pred CCHHHHHHHHhccCCCC
Confidence 33578999999999974
No 86
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=97.83 E-value=3e-05 Score=82.35 Aligned_cols=78 Identities=21% Similarity=0.178 Sum_probs=59.6
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCC--c-----cEEEeCCCcceeeeecCCCcccccccc
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDD--I-----VYVVDCGKTKMSNFDVKDNIATLKPEW 76 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~--v-----~~VID~G~~k~~~yd~~~~~~~l~~~~ 76 (350)
++....+||. ..++...+. .+.-.|.||||+|..|++|+. | -|||.+. .+
T Consensus 429 gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~------------------~p 488 (745)
T TIGR00963 429 GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTE------------------RH 488 (745)
T ss_pred CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecC------------------CC
Confidence 5566677888 445554432 566789999999999999998 4 4888632 24
Q ss_pred ccHhhHHhhhccCCCCC-CceEEEccccc
Q psy6093 77 ISLANAKQRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 77 iSka~~~QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
-|+....||.||+||.+ ||.+.-+.+.+
T Consensus 489 ~s~ri~~q~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 489 ESRRIDNQLRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred CcHHHHHHHhccccCCCCCcceEEEEecc
Confidence 57778899999999998 89988777765
No 87
>KOG0948|consensus
Probab=97.80 E-value=7.4e-06 Score=85.45 Aligned_cols=83 Identities=28% Similarity=0.407 Sum_probs=66.9
Q ss_pred cCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccC
Q psy6093 13 PSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRA 89 (350)
Q Consensus 13 lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRa 89 (350)
.||||-|--..-| |+.|-.||++||-....|+++|.-++|. ...+.||. -...|||--+|.|++|||
T Consensus 452 HHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF----T~~rKfDG------~~fRwissGEYIQMSGRA 521 (1041)
T KOG0948|consen 452 HHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF----TAVRKFDG------KKFRWISSGEYIQMSGRA 521 (1041)
T ss_pred ccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE----eeccccCC------cceeeecccceEEecccc
Confidence 4899988655433 7799999999999999999999866654 23344544 456899999999999999
Q ss_pred CCCC---CceEEEcccccc
Q psy6093 90 GRVQ---EGVCYHLYSRAR 105 (350)
Q Consensus 90 GR~~---~G~c~rLyt~~~ 105 (350)
||.+ -|+|+-+..+..
T Consensus 522 GRRG~DdrGivIlmiDekm 540 (1041)
T KOG0948|consen 522 GRRGIDDRGIVILMIDEKM 540 (1041)
T ss_pred cccCCCCCceEEEEecCcC
Confidence 9987 699999988753
No 88
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=97.79 E-value=3.5e-05 Score=84.35 Aligned_cols=75 Identities=25% Similarity=0.370 Sum_probs=60.7
Q ss_pred cCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccC
Q psy6093 13 PSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRA 89 (350)
Q Consensus 13 lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRa 89 (350)
.||+|+..+.++++. .|.-.|+|||.|.||||+||++-..|- .+... -.-|+.-|-+||.
T Consensus 835 aHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII--------e~AD~---------fGLsQLyQLRGRV 897 (1139)
T COG1197 835 AHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII--------ERADK---------FGLAQLYQLRGRV 897 (1139)
T ss_pred eecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE--------ecccc---------ccHHHHHHhcccc
Confidence 499999999999954 899999999999999999999987772 11111 1235667999999
Q ss_pred CCCC-CceEEEccccc
Q psy6093 90 GRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 90 GR~~-~G~c~rLyt~~ 104 (350)
||.. -|.||-||+..
T Consensus 898 GRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 898 GRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred CCccceEEEEEeecCc
Confidence 9986 69999999864
No 89
>KOG0950|consensus
Probab=97.76 E-value=2.9e-05 Score=82.99 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=68.0
Q ss_pred eeeccCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhh
Q psy6093 9 FLQCPSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQR 85 (350)
Q Consensus 9 ~~~~lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR 85 (350)
-+.-+|+||+.++|+.| |+.|..+|++||+....|++.|..+++|-.- .......++.+|+||
T Consensus 524 GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP--------------~~g~~~l~~~~YkQM 589 (1008)
T KOG0950|consen 524 GVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAP--------------YVGREFLTRLEYKQM 589 (1008)
T ss_pred cceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCC--------------ccccchhhhhhHHhh
Confidence 34446999999999987 6699999999999999999999999998421 123345788999999
Q ss_pred hccCCCCC---CceEEEcccccc
Q psy6093 86 RGRAGRVQ---EGVCYHLYSRAR 105 (350)
Q Consensus 86 ~GRaGR~~---~G~c~rLyt~~~ 105 (350)
.|||||++ -|.++-.+.+.+
T Consensus 590 ~GRAGR~gidT~GdsiLI~k~~e 612 (1008)
T KOG0950|consen 590 VGRAGRTGIDTLGDSILIIKSSE 612 (1008)
T ss_pred hhhhhhcccccCcceEEEeeccc
Confidence 99999996 588888877754
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.75 E-value=2.7e-05 Score=80.20 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=61.1
Q ss_pred cccceeeeccCCCCCHHHH--HHh---ccCCCceEEEecCccccCCCCCCccEEE--eCCCcceeeeecCCCcccccccc
Q psy6093 4 FFQIWFLQCPSSGLKHLQN--KSV---FELGVRKIVLATNIAETSITIDDIVYVV--DCGKTKMSNFDVKDNIATLKPEW 76 (350)
Q Consensus 4 ~~~~~~~~~lHs~l~~~~q--~~v---f~~g~rkvIlaTniaEtsvtip~v~~VI--D~G~~k~~~yd~~~~~~~l~~~~ 76 (350)
.|.+..+..+|+.++..+. +++ |..|+..|+|+|++++.|+++|+|+.|+ | +|...+...+.-.-
T Consensus 281 ~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~--------aD~~l~~pd~ra~E 352 (505)
T TIGR00595 281 LFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD--------ADSGLHSPDFRAAE 352 (505)
T ss_pred hCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc--------CcccccCcccchHH
Confidence 3567788888999876543 444 4488899999999999999999999885 4 33222222221111
Q ss_pred ccHhhHHhhhccCCCCC-CceEEE
Q psy6093 77 ISLANAKQRRGRAGRVQ-EGVCYH 99 (350)
Q Consensus 77 iSka~~~QR~GRaGR~~-~G~c~r 99 (350)
-.-+...|++|||||.. +|.++-
T Consensus 353 ~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 353 RGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred HHHHHHHHHHhccCCCCCCCEEEE
Confidence 12345789999999955 788873
No 91
>KOG0352|consensus
Probab=97.75 E-value=2.4e-05 Score=77.33 Aligned_cols=84 Identities=25% Similarity=0.270 Sum_probs=67.3
Q ss_pred cceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhH
Q psy6093 6 QIWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANA 82 (350)
Q Consensus 6 ~~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~ 82 (350)
+|.....+|+||...||..|-+ .+..-||+||+-...||+-|+|+|||. +|+.. +-+-|
T Consensus 278 ~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH--------W~~~q----------n~AgY 339 (641)
T KOG0352|consen 278 AGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH--------WSPSQ----------NLAGY 339 (641)
T ss_pred cCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe--------cCchh----------hhHHH
Confidence 3666777899999999999965 889999999999999999999999996 65544 44567
Q ss_pred HhhhccCCCCCCceEEEc-ccccccc
Q psy6093 83 KQRRGRAGRVQEGVCYHL-YSRAREQ 107 (350)
Q Consensus 83 ~QR~GRaGR~~~G~c~rL-yt~~~~~ 107 (350)
-|-.|||||-+--.+-|| |++++-+
T Consensus 340 YQESGRAGRDGk~SyCRLYYsR~D~~ 365 (641)
T KOG0352|consen 340 YQESGRAGRDGKRSYCRLYYSRQDKN 365 (641)
T ss_pred HHhccccccCCCccceeeeecccchH
Confidence 899999999874334466 6666543
No 92
>KOG0947|consensus
Probab=97.73 E-value=4e-05 Score=81.90 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=62.8
Q ss_pred cCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccC
Q psy6093 13 PSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRA 89 (350)
Q Consensus 13 lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRa 89 (350)
.|||+-|--..-| |+.|..||++||-....||++|.-++|+|+ ...+|.... .-+.-.+|.|++|||
T Consensus 636 HH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~S----l~KhDG~ef------R~L~PGEytQMAGRA 705 (1248)
T KOG0947|consen 636 HHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSS----LRKHDGNEF------RELLPGEYTQMAGRA 705 (1248)
T ss_pred hcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeee----hhhccCcce------eecCChhHHhhhccc
Confidence 4899988765544 779999999999999999999998888875 223443322 235668999999999
Q ss_pred CCCC---CceEEEccccc
Q psy6093 90 GRVQ---EGVCYHLYSRA 104 (350)
Q Consensus 90 GR~~---~G~c~rLyt~~ 104 (350)
||.+ .|..+-+.+..
T Consensus 706 GRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 706 GRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred cccccCcCceEEEEecCC
Confidence 9987 58777665543
No 93
>KOG0952|consensus
Probab=97.71 E-value=0.00033 Score=75.81 Aligned_cols=195 Identities=14% Similarity=0.149 Sum_probs=117.2
Q ss_pred cCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccC
Q psy6093 13 PSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRA 89 (350)
Q Consensus 13 lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRa 89 (350)
.|+||+.++|..+ |..|..+|.+||....=||++|+-.++| ...+.||++.|.- +-.+-....|--|||
T Consensus 402 HhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViI----KGT~~ydsskg~f----~dlgilDVlQifGRA 473 (1230)
T KOG0952|consen 402 HHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVII----KGTQVYDSSKGSF----VDLGILDVLQIFGRA 473 (1230)
T ss_pred cccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEe----cCCcccccccCce----eeehHHHHHHHHhcc
Confidence 3899999998755 7799999999999999999999866665 2356788877532 224556778999999
Q ss_pred CCCC---CceEEEccccc---ccccccCCCCccccccchHHHHHHHhh--------c-cCccchhhHhhhhcccc-----
Q psy6093 90 GRVQ---EGVCYHLYSRA---REQTFQDYPLPEIQRTRLDEVVRTLES--------K-KFKMVSRRFKVMLNTAF----- 149 (350)
Q Consensus 90 GR~~---~G~c~rLyt~~---~~~~~~~~~~pEi~r~~L~~~~L~~k~--------~-~~~~~~~~f~~~l~~~~----- 149 (350)
||++ .|.-+-+-+.. .|..+-..+.| +++-.+.... + .+.++ .+=.+-|+.||
T Consensus 474 GRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~p------iES~~~~~L~dnLnAEi~LgTVt~V-deAVeWL~yTylYVRm 546 (1230)
T KOG0952|consen 474 GRPQFDSSGEGIIITTRDKLDHYESLLTGQNP------IESQLLPCLIDNLNAEISLGTVTNV-DEAVEWLKYTYLYVRM 546 (1230)
T ss_pred CCCCCCCCceEEEEecccHHHHHHHHHcCCCh------hHHHHHHHHHHhhhhheeeceeecH-HHHHHHhhceeEEEEe
Confidence 9997 57766655543 35554443333 2222211111 0 11111 11001123332
Q ss_pred --CCc--cccCccCCCCCCH-----HHHHHHHHHHHHHHcc--CCC-C--CCCHHHhhhccCCCchhHHHHHHHhhh-cC
Q psy6093 150 --TPY--VWVPKQVLDPPDP-----ASVQLSLKLLRLIDAL--DDD-E--HLTPLGYHLAKLPLDPQIGKMLLMASI-FS 214 (350)
Q Consensus 150 --~p~--~~~l~~~~~pP~~-----~~i~~al~~L~~lgal--d~~-~--~LT~lG~~ls~Lpldp~~ak~ll~~~~-~~ 214 (350)
-|+ ++.-.....-|.. +.+..++..|.....+ |.. + ..|++||.++.++|.-..-+.++.... |-
T Consensus 547 ~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~ 626 (1230)
T KOG0952|consen 547 RKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFY 626 (1230)
T ss_pred ccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccC
Confidence 011 1111122222222 1234444555444333 332 2 789999999999999999999999887 66
Q ss_pred ChhHHHHH
Q psy6093 215 CVDPVFTV 222 (350)
Q Consensus 215 C~~~~l~i 222 (350)
-.++++.+
T Consensus 627 se~~iL~l 634 (1230)
T KOG0952|consen 627 SEDDILAL 634 (1230)
T ss_pred CHHHHHHH
Confidence 67777776
No 94
>KOG0349|consensus
Probab=97.70 E-value=4.3e-05 Score=75.67 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=62.1
Q ss_pred ceeeeccCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
-+..+|+|+...|.|++.- |+.+..|.+++|++|..+++|-++-|+|+.-+ |=.|.+|.
T Consensus 532 ~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtl------------------pd~k~nyv 593 (725)
T KOG0349|consen 532 HYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTL------------------PDDKTNYV 593 (725)
T ss_pred cceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEec------------------Ccccchhh
Confidence 5788999999988777655 45888999999999999999999999998332 33456677
Q ss_pred hhhccCCCCC-CceEEEcc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLY 101 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLy 101 (350)
.|.||.||.. -|..+.|.
T Consensus 594 hrigrvgraermglaislv 612 (725)
T KOG0349|consen 594 HRIGRVGRAERMGLAISLV 612 (725)
T ss_pred hhhhccchhhhcceeEEEe
Confidence 8999999964 57777664
No 95
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.70 E-value=2.4e-05 Score=85.09 Aligned_cols=72 Identities=31% Similarity=0.384 Sum_probs=60.7
Q ss_pred eeeeccCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHh
Q psy6093 8 WFLQCPSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQ 84 (350)
Q Consensus 8 ~~~~~lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~Q 84 (350)
+.+...||++++++++++ |+.|.-++++|||.+|.+++|-++..||-.|+.- .|..+..|
T Consensus 339 ~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~-----------------~s~~~~~Q 401 (851)
T COG1205 339 DAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPG-----------------VSVLSFRQ 401 (851)
T ss_pred hheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCC-----------------chHHHHHH
Confidence 556677999999999988 4489999999999999999999999999765521 27789999
Q ss_pred hhccCCCCC-Cce
Q psy6093 85 RRGRAGRVQ-EGV 96 (350)
Q Consensus 85 R~GRaGR~~-~G~ 96 (350)
|+|||||.. .+.
T Consensus 402 ~~GRaGR~~~~~l 414 (851)
T COG1205 402 RAGRAGRRGQESL 414 (851)
T ss_pred hhhhccCCCCCce
Confidence 999999987 443
No 96
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.69 E-value=4.5e-05 Score=81.32 Aligned_cols=88 Identities=16% Similarity=0.149 Sum_probs=60.4
Q ss_pred cccceeeeccCCCCCH--HHHHHhc---cCCCceEEEecCccccCCCCCCccEEE--eCCCcceeeeecCCCcccccccc
Q psy6093 4 FFQIWFLQCPSSGLKH--LQNKSVF---ELGVRKIVLATNIAETSITIDDIVYVV--DCGKTKMSNFDVKDNIATLKPEW 76 (350)
Q Consensus 4 ~~~~~~~~~lHs~l~~--~~q~~vf---~~g~rkvIlaTniaEtsvtip~v~~VI--D~G~~k~~~yd~~~~~~~l~~~~ 76 (350)
.|.+..+..+|+.+.. +++++++ ..|+..|+|+|++++.|+++|+|+.|+ | .|...+...+...-
T Consensus 449 ~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~--------aD~~l~~pdfra~E 520 (679)
T PRK05580 449 LFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLD--------ADLGLFSPDFRASE 520 (679)
T ss_pred hCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEc--------CchhccCCccchHH
Confidence 3556778888999864 4456564 488899999999999999999999885 3 22211111111111
Q ss_pred ccHhhHHhhhccCCCCC-CceEEE
Q psy6093 77 ISLANAKQRRGRAGRVQ-EGVCYH 99 (350)
Q Consensus 77 iSka~~~QR~GRaGR~~-~G~c~r 99 (350)
-.-+.+.|++|||||.+ +|.++-
T Consensus 521 r~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 521 RTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred HHHHHHHHHHhhccCCCCCCEEEE
Confidence 12356789999999954 788884
No 97
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=97.68 E-value=7.3e-05 Score=80.22 Aligned_cols=142 Identities=22% Similarity=0.215 Sum_probs=91.2
Q ss_pred eeeccCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhh
Q psy6093 9 FLQCPSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQR 85 (350)
Q Consensus 9 ~~~~lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR 85 (350)
.+...||+|+.++|..+ |+.|.-|+||||.-.|-||+|.+|+.||- | ..|-|-+...||
T Consensus 280 ~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq--------~----------~SP~sV~r~lQR 341 (814)
T COG1201 280 IIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ--------L----------GSPKSVNRFLQR 341 (814)
T ss_pred ceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE--------e----------CCcHHHHHHhHh
Confidence 44456999999999888 55899999999999999999999999995 3 235567788999
Q ss_pred hccCCCCC----CceEEEccccccccc--------ccCCCCccccccchHHHHHHHhhccCccc--hhhHhhhhccccCC
Q psy6093 86 RGRAGRVQ----EGVCYHLYSRAREQT--------FQDYPLPEIQRTRLDEVVRTLESKKFKMV--SRRFKVMLNTAFTP 151 (350)
Q Consensus 86 ~GRaGR~~----~G~c~rLyt~~~~~~--------~~~~~~pEi~r~~L~~~~L~~k~~~~~~~--~~~f~~~l~~~~~p 151 (350)
.||||+.- .|..|...-.+..++ --....+++.+.+|+-+.-++-.+-+... ..+.-..++.+ +|
T Consensus 342 iGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y~~vrra-yp 420 (814)
T COG1201 342 IGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEKVWEVEEAYRVVRRA-YP 420 (814)
T ss_pred ccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhCcCCHHHHHHHHHhc-cc
Confidence 99999864 344333221111111 12334677788888766655544332211 02221223333 24
Q ss_pred ccccCccCCCCCCHHHHHHHHHHHHH
Q psy6093 152 YVWVPKQVLDPPDPASVQLSLKLLRL 177 (350)
Q Consensus 152 ~~~~l~~~~~pP~~~~i~~al~~L~~ 177 (350)
+. --+.+.+...++.|..
T Consensus 421 y~--------~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 421 YA--------DLSREDFRLVLRYLAG 438 (814)
T ss_pred cc--------cCCHHHHHHHHHHHhh
Confidence 31 1256778888888877
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=97.65 E-value=6e-05 Score=72.83 Aligned_cols=66 Identities=20% Similarity=0.224 Sum_probs=48.5
Q ss_pred ccCCC-CCHHHHHHhccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccCC
Q psy6093 12 CPSSG-LKHLQNKSVFELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAG 90 (350)
Q Consensus 12 ~lHs~-l~~~~q~~vf~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaG 90 (350)
+.||. -...|+-..|++|+.+++++|.|+|.|||+|+|+++|= +.. ..--++++..|-+||+|
T Consensus 336 ~Vhs~d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl---------gae-------h~vfTesaLVQIaGRvG 399 (441)
T COG4098 336 SVHSEDQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL---------GAE-------HRVFTESALVQIAGRVG 399 (441)
T ss_pred eeeccCccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe---------cCC-------cccccHHHHHHHhhhcc
Confidence 34653 22334445577999999999999999999999997661 111 12247889999999999
Q ss_pred CCC
Q psy6093 91 RVQ 93 (350)
Q Consensus 91 R~~ 93 (350)
|.-
T Consensus 400 Rs~ 402 (441)
T COG4098 400 RSL 402 (441)
T ss_pred CCC
Confidence 964
No 99
>KOG0327|consensus
Probab=97.62 E-value=5.3e-05 Score=73.89 Aligned_cols=83 Identities=19% Similarity=0.413 Sum_probs=71.0
Q ss_pred ceeeeccCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
+|.+.+.|+.+.+.+|..+ |+.|.-+|+++|..+..|++|-++..||+ ||.. --+.+|.
T Consensus 287 ~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin--------ydlP----------~~~~~yi 348 (397)
T KOG0327|consen 287 GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN--------YDLP----------ARKENYI 348 (397)
T ss_pred CceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee--------eccc----------cchhhhh
Confidence 7889999999999988777 55899999999999999999999999998 6544 4466777
Q ss_pred hhhccCCCCC-CceEEEcccccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAREQ 107 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~~~ 107 (350)
.|+||+||.+ +|....+.++++..
T Consensus 349 hR~gr~gr~grkg~~in~v~~~d~~ 373 (397)
T KOG0327|consen 349 HRIGRAGRFGRKGVAINFVTEEDVR 373 (397)
T ss_pred hhcccccccCCCceeeeeehHhhHH
Confidence 8999999987 89999888876543
No 100
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.53 E-value=9.2e-05 Score=80.34 Aligned_cols=79 Identities=20% Similarity=0.164 Sum_probs=56.2
Q ss_pred ceeeeccCCCCCHHHHHHhc---cCCCceEEEecCccccCCCCC---CccEE-----EeCCCcceeeeecCCCccccccc
Q psy6093 7 IWFLQCPSSGLKHLQNKSVF---ELGVRKIVLATNIAETSITID---DIVYV-----VDCGKTKMSNFDVKDNIATLKPE 75 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf---~~g~rkvIlaTniaEtsvtip---~v~~V-----ID~G~~k~~~yd~~~~~~~l~~~ 75 (350)
++....||+ ...+|.... ..+.-.|.||||+|..|++|+ +|..| |.+ ..
T Consensus 622 gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgt------------------er 681 (1025)
T PRK12900 622 RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGS------------------ER 681 (1025)
T ss_pred CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCC------------------CC
Confidence 555666786 344444433 356678999999999999999 55433 432 22
Q ss_pred cccHhhHHhhhccCCCCC-CceEEEcccccc
Q psy6093 76 WISLANAKQRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 76 ~iSka~~~QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
+-|+-...||.||+||.+ ||.+..+.+.++
T Consensus 682 hes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 682 HESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred CchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 356666899999999998 899988877653
No 101
>KOG4150|consensus
Probab=97.33 E-value=0.00019 Score=73.32 Aligned_cols=65 Identities=29% Similarity=0.236 Sum_probs=57.7
Q ss_pred eccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhc
Q psy6093 11 QCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRG 87 (350)
Q Consensus 11 ~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~G 87 (350)
..+-||-..++|+++=. .|+-+-|+|||.+|-||+|.+.+.|+-+|+ |-|-++.+|-.|
T Consensus 561 ~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GF------------------P~S~aNl~QQ~G 622 (1034)
T KOG4150|consen 561 TSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGF------------------PGSIANLWQQAG 622 (1034)
T ss_pred HhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccC------------------chhHHHHHHHhc
Confidence 34568999999999855 788999999999999999999999999887 468899999999
Q ss_pred cCCCCC
Q psy6093 88 RAGRVQ 93 (350)
Q Consensus 88 RaGR~~ 93 (350)
||||..
T Consensus 623 RAGRRN 628 (1034)
T KOG4150|consen 623 RAGRRN 628 (1034)
T ss_pred cccccC
Confidence 999975
No 102
>KOG0334|consensus
Probab=97.30 E-value=0.00021 Score=77.17 Aligned_cols=79 Identities=20% Similarity=0.433 Sum_probs=66.7
Q ss_pred ceeeeccCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++....+||+.++.++..+ |+.+.-++++||.++..|++++++..||+ ||-..+... +.
T Consensus 637 g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn--------yd~pnh~ed----------yv 698 (997)
T KOG0334|consen 637 GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN--------YDFPNHYED----------YV 698 (997)
T ss_pred CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE--------cccchhHHH----------HH
Confidence 5666678999999999888 55889999999999999999999999998 776665444 66
Q ss_pred hhhccCCCCC-CceEEEcccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSR 103 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~ 103 (350)
.|.||+||++ .|.||.+.++
T Consensus 699 hR~gRTgragrkg~AvtFi~p 719 (997)
T KOG0334|consen 699 HRVGRTGRAGRKGAAVTFITP 719 (997)
T ss_pred HHhcccccCCccceeEEEeCh
Confidence 7999999988 5888887766
No 103
>KOG0953|consensus
Probab=97.30 E-value=0.00048 Score=70.27 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=60.7
Q ss_pred eccCCCCCHHH---HHHhcc--CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhh
Q psy6093 11 QCPSSGLKHLQ---NKSVFE--LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQR 85 (350)
Q Consensus 11 ~~lHs~l~~~~---q~~vf~--~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR 85 (350)
.-+||+|||+- |+..|. .+.-+|+|||+....|+++. |+=||=+-+.| |+ .-.+..|+-++++|=
T Consensus 385 aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~K---ys------g~e~~~it~sqikQI 454 (700)
T KOG0953|consen 385 AVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIK---YS------GRETEDITVSQIKQI 454 (700)
T ss_pred EEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeeccc---CC------cccceeccHHHHHHH
Confidence 33599999985 556686 57789999999999999995 56565333333 43 345678999999999
Q ss_pred hccCCCCC----CceEEEcccc
Q psy6093 86 RGRAGRVQ----EGVCYHLYSR 103 (350)
Q Consensus 86 ~GRaGR~~----~G~c~rLyt~ 103 (350)
+|||||-+ .|..=.|+.+
T Consensus 455 AGRAGRf~s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 455 AGRAGRFGSKYPQGEVTTLHSE 476 (700)
T ss_pred hhcccccccCCcCceEEEeeHh
Confidence 99999986 3554445444
No 104
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.00067 Score=74.36 Aligned_cols=81 Identities=28% Similarity=0.355 Sum_probs=65.5
Q ss_pred cCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccC
Q psy6093 13 PSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRA 89 (350)
Q Consensus 13 lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRa 89 (350)
.|+||-|..+..| |+.|.+||++||-+..-|+++|.-+.|. +++.| +|. -...|+|..++.|++|||
T Consensus 450 HH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~K---~dG------~~~r~L~~gEy~QmsGRA 519 (1041)
T COG4581 450 HHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLSK---FDG------NGHRWLSPGEYTQMSGRA 519 (1041)
T ss_pred hccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeEE---ecC------CceeecChhHHHHhhhhh
Confidence 3899999988776 6699999999999999999999866665 44433 442 346799999999999999
Q ss_pred CCCC---CceEEEcccc
Q psy6093 90 GRVQ---EGVCYHLYSR 103 (350)
Q Consensus 90 GR~~---~G~c~rLyt~ 103 (350)
||.+ -|+.+...+.
T Consensus 520 GRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 520 GRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred ccccccccceEEEecCC
Confidence 9987 6888877443
No 105
>KOG4284|consensus
Probab=97.06 E-value=0.00089 Score=69.45 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=65.6
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
|+.+.++-|.|.+.+|..+|+ .-.-||+|||+.-..||+-|+|..||| .|+. ..-..|-
T Consensus 296 G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN--------iD~p----------~d~eTY~ 357 (980)
T KOG4284|consen 296 GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN--------IDAP----------ADEETYF 357 (980)
T ss_pred CCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEe--------cCCC----------cchHHHH
Confidence 778888899999999999987 455699999999999999999999997 3443 3445677
Q ss_pred hhhccCCCCC-CceEEEcccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSR 103 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~ 103 (350)
.|.|||||-+ -|....+.-.
T Consensus 358 HRIGRAgRFG~~G~aVT~~~~ 378 (980)
T KOG4284|consen 358 HRIGRAGRFGAHGAAVTLLED 378 (980)
T ss_pred HHhhhcccccccceeEEEecc
Confidence 8999999988 5887776544
No 106
>KOG0949|consensus
Probab=96.85 E-value=0.0013 Score=70.88 Aligned_cols=91 Identities=27% Similarity=0.317 Sum_probs=62.0
Q ss_pred cCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccC
Q psy6093 13 PSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRA 89 (350)
Q Consensus 13 lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRa 89 (350)
.||||+..+|..| |+.|.-.|++||....-||++|=-++|.- .++|... --+++|++|||
T Consensus 968 HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~--------------gDsLQL~---plny~QmaGRA 1030 (1330)
T KOG0949|consen 968 HHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFA--------------GDSLQLD---PLNYKQMAGRA 1030 (1330)
T ss_pred cccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEe--------------ccccccC---chhHHhhhccc
Confidence 4899999999877 77999999999999999999995444431 1223332 34799999999
Q ss_pred CCCC---CceEEEc-ccccccccccCCCCcccccc
Q psy6093 90 GRVQ---EGVCYHL-YSRAREQTFQDYPLPEIQRT 120 (350)
Q Consensus 90 GR~~---~G~c~rL-yt~~~~~~~~~~~~pEi~r~ 120 (350)
||.+ -|...-+ .+.+.-..+--...|.|+-.
T Consensus 1031 GRRGFD~lGnV~FmgiP~~kv~rLlts~L~diqG~ 1065 (1330)
T KOG0949|consen 1031 GRRGFDTLGNVVFMGIPRQKVQRLLTSLLPDIQGA 1065 (1330)
T ss_pred cccccccccceEEEeCcHHHHHHHHHHhhhcccCC
Confidence 9987 4655443 34333223333344555543
No 107
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=96.65 E-value=0.0016 Score=70.26 Aligned_cols=70 Identities=23% Similarity=0.245 Sum_probs=54.6
Q ss_pred eeeccCCCCCHHHHHHhcc-------CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhh
Q psy6093 9 FLQCPSSGLKHLQNKSVFE-------LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLAN 81 (350)
Q Consensus 9 ~~~~lHs~l~~~~q~~vf~-------~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~ 81 (350)
.+.++||.+...+|.+.-+ .+.-.|+|||-+.|.||+|+ .+.+| +...+-.+
T Consensus 466 ~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mI--------------------Te~aPidS 524 (733)
T COG1203 466 KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLI--------------------TELAPIDS 524 (733)
T ss_pred CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeee--------------------ecCCCHHH
Confidence 4777899999999876633 45668999999999999997 55555 34466778
Q ss_pred HHhhhccCCCCC---CceEEE
Q psy6093 82 AKQRRGRAGRVQ---EGVCYH 99 (350)
Q Consensus 82 ~~QR~GRaGR~~---~G~c~r 99 (350)
..||+||.+|.+ +|..|.
T Consensus 525 LIQR~GRv~R~g~~~~~~~~v 545 (733)
T COG1203 525 LIQRAGRVNRHGKKENGKIYV 545 (733)
T ss_pred HHHHHHHHhhcccccCCceeE
Confidence 899999999988 455544
No 108
>PRK14701 reverse gyrase; Provisional
Probab=96.55 E-value=0.0011 Score=76.73 Aligned_cols=91 Identities=12% Similarity=-0.010 Sum_probs=62.3
Q ss_pred cceeeeccCCCCCHHHHHHhccCCCceEEEec----CccccCCCCCC-ccEEEeCCCcceee----eecCCCcccccccc
Q psy6093 6 QIWFLQCPSSGLKHLQNKSVFELGVRKIVLAT----NIAETSITIDD-IVYVVDCGKTKMSN----FDVKDNIATLKPEW 76 (350)
Q Consensus 6 ~~~~~~~lHs~l~~~~q~~vf~~g~rkvIlaT----niaEtsvtip~-v~~VID~G~~k~~~----yd~~~~~~~l~~~~ 76 (350)
+++.+..+||+ ..+-.+-|+.|...|+||| ++|..||++|+ |+|||.-|..|.+. |...... .+
T Consensus 356 ~Gi~a~~~h~~--R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~-~~---- 428 (1638)
T PRK14701 356 DGFKIELVSAK--NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR-IL---- 428 (1638)
T ss_pred CCCeEEEecch--HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh-hh----
Confidence 37888889996 2222234669999999999 69999999999 99999988888442 2211111 01
Q ss_pred ccHhhHHhhhccCCCCC-CceEEEccccc
Q psy6093 77 ISLANAKQRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 77 iSka~~~QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
. ...+.|+.|||||.+ |+.|+-.|..+
T Consensus 429 ~-~~~~~~~~~~a~~~g~~~~~~~~~~~~ 456 (1638)
T PRK14701 429 G-LLSEILKIEEELKEGIPIEGVLDVFPE 456 (1638)
T ss_pred c-chHHHHHhhhhcccCCcchhHHHhHHH
Confidence 1 234567889999987 77776444443
No 109
>KOG0353|consensus
Probab=96.53 E-value=0.0026 Score=62.33 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=45.6
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcc
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTK 59 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k 59 (350)
+...-.+|+.|-|+++.-+-+ .|...|||||-....||+-|||+|||.-.+.|
T Consensus 341 gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~k 396 (695)
T KOG0353|consen 341 GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPK 396 (695)
T ss_pred CccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccch
Confidence 455567899999999887766 89999999999999999999999999766655
No 110
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=96.41 E-value=0.0044 Score=67.21 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=33.2
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCC
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITID 47 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip 47 (350)
++....+|+..+..|...|.+ +|. |.||||+|..|.+|.
T Consensus 473 gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIk 514 (908)
T PRK13107 473 KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIV 514 (908)
T ss_pred CCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCccee
Confidence 667777899999999988866 554 999999999999885
No 111
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=96.33 E-value=0.0048 Score=67.00 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=55.4
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCC-C--ccEEE-eCCCc---------------ceeeee
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITID-D--IVYVV-DCGKT---------------KMSNFD 64 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip-~--v~~VI-D~G~~---------------k~~~yd 64 (350)
+.....||+.....|+..+.+ +| .|.||||+|..|++|. + ..+-+ +.-.. .....-
T Consensus 468 gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 545 (896)
T PRK13104 468 NIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVI 545 (896)
T ss_pred CCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHH
Confidence 667777899999999888865 66 5999999999999885 1 11100 00000 000000
Q ss_pred cCCCcccccc-ccccHhhHHhhhccCCCCC-CceEEE
Q psy6093 65 VKDNIATLKP-EWISLANAKQRRGRAGRVQ-EGVCYH 99 (350)
Q Consensus 65 ~~~~~~~l~~-~~iSka~~~QR~GRaGR~~-~G~c~r 99 (350)
..+|+..+.+ ..-|+-==.|-+|||||.+ ||.+-.
T Consensus 546 ~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f 582 (896)
T PRK13104 546 AAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRF 582 (896)
T ss_pred HcCCCEEEeeccCchHHHHHHhccccccCCCCCceEE
Confidence 1134333322 3345555579999999998 887543
No 112
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=96.13 E-value=0.0064 Score=68.62 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=46.0
Q ss_pred ceeeeccCCCCCHHHHHHhccCCCceEEEe----cCccccCCCCCC-ccEEEeCCCcceee
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFELGVRKIVLA----TNIAETSITIDD-IVYVVDCGKTKMSN 62 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~~g~rkvIla----TniaEtsvtip~-v~~VID~G~~k~~~ 62 (350)
++.+..+||+++. +--+-|+.|+.+|+|| ||+|..||+||+ |+|||+.|..+.+.
T Consensus 353 g~~a~~lhg~~~~-~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 353 GVKAVAYHATKPK-EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFKV 412 (1171)
T ss_pred CceEEEEeCCCCH-HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEEE
Confidence 6788899999973 2234466999999999 599999999999 89999999987643
No 113
>PRK09401 reverse gyrase; Reviewed
Probab=95.87 E-value=0.0086 Score=67.61 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=45.0
Q ss_pred cceeeeccCCCCCHHHHHHhccCCCceEEEe----cCccccCCCCCC-ccEEEeCCCcce
Q psy6093 6 QIWFLQCPSSGLKHLQNKSVFELGVRKIVLA----TNIAETSITIDD-IVYVVDCGKTKM 60 (350)
Q Consensus 6 ~~~~~~~lHs~l~~~~q~~vf~~g~rkvIla----TniaEtsvtip~-v~~VID~G~~k~ 60 (350)
+++.+..+||+| +..-+-|+.|..+|+|| ||+|..||+||+ |+|||+.|..+.
T Consensus 354 ~gi~v~~~hg~l--~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~ 411 (1176)
T PRK09401 354 LGINAELAISGF--ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKF 411 (1176)
T ss_pred CCCcEEEEeCcH--HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCE
Confidence 378888899999 22334577999999999 799999999999 899999999983
No 114
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=95.80 E-value=0.024 Score=63.77 Aligned_cols=100 Identities=17% Similarity=0.221 Sum_probs=64.0
Q ss_pred eccCCCCCHHHHH-HhccCCC-ceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhcc
Q psy6093 11 QCPSSGLKHLQNK-SVFELGV-RKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGR 88 (350)
Q Consensus 11 ~~lHs~l~~~~q~-~vf~~g~-rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GR 88 (350)
.-+||..+..++. +-|+.+. .+|+++++++-||+++|.|..||- ++ ..-|+..+.||.||
T Consensus 735 ~~itg~~~~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf--------~r----------pvkS~~lf~QmIGR 796 (1123)
T PRK11448 735 IKITGSIDKPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVF--------LR----------RVRSRILYEQMLGR 796 (1123)
T ss_pred EEEeCCccchHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEE--------ec----------CCCCHHHHHHHHhh
Confidence 3457777643321 1155443 489999999999999999999994 11 12578889999999
Q ss_pred CCCCCC--ce-EEEcccc-cccccccCCC--Ccccc--ccchHHHHHH
Q psy6093 89 AGRVQE--GV-CYHLYSR-AREQTFQDYP--LPEIQ--RTRLDEVVRT 128 (350)
Q Consensus 89 aGR~~~--G~-c~rLyt~-~~~~~~~~~~--~pEi~--r~~L~~~~L~ 128 (350)
+.|..| |+ +|.+|.- ..++.+.+.. .|.+. ..+|..++-.
T Consensus 797 gtR~~~~~~K~~f~I~D~vg~~~~l~~~~~~~p~~~~~~~~l~~l~~~ 844 (1123)
T PRK11448 797 ATRLCPEIGKTHFRIFDAVDIYEALESVTTMKPVVVNPNISLEQLVNE 844 (1123)
T ss_pred hccCCccCCCceEEEEehHHHHHhccccccCCccccCCCCCHHHHHHH
Confidence 999988 44 5555554 2344444433 34432 3445555433
No 115
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=95.14 E-value=0.028 Score=57.12 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=55.1
Q ss_pred eeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhh
Q psy6093 10 LQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRR 86 (350)
Q Consensus 10 ~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 86 (350)
+..+.+..|.++|..+++ .|..++++++-++..|+++|++..+|= ....-|+..+.||.
T Consensus 309 ~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~------------------~~~t~S~~~~~Q~l 370 (442)
T COG1061 309 VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLII------------------LRPTGSRRLFIQRL 370 (442)
T ss_pred eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEE------------------eCCCCcHHHHHHHh
Confidence 335578899999998855 667999999999999999999999982 11135788899999
Q ss_pred ccCCCCCCc
Q psy6093 87 GRAGRVQEG 95 (350)
Q Consensus 87 GRaGR~~~G 95 (350)
||.=|..+|
T Consensus 371 GR~LR~~~~ 379 (442)
T COG1061 371 GRGLRPAEG 379 (442)
T ss_pred hhhccCCCC
Confidence 999996544
No 116
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=95.06 E-value=0.036 Score=60.17 Aligned_cols=94 Identities=15% Similarity=0.052 Sum_probs=54.7
Q ss_pred ceeeeccCCCCCHHHHHHhc---cCCCceEEEecCccccCCCCCCc---cEEEeCCCcc----------------eeeee
Q psy6093 7 IWFLQCPSSGLKHLQNKSVF---ELGVRKIVLATNIAETSITIDDI---VYVVDCGKTK----------------MSNFD 64 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf---~~g~rkvIlaTniaEtsvtip~v---~~VID~G~~k----------------~~~yd 64 (350)
+.....+||. ..+|...+ ..+.-.|.||||+|..|++|+== .+.....+.. ....-
T Consensus 454 gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 531 (830)
T PRK12904 454 GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVL 531 (830)
T ss_pred CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHH
Confidence 5566667885 44555443 36778999999999999999721 1000000000 00001
Q ss_pred cCCCcccccc-ccccHhhHHhhhccCCCCC-CceEEEccc
Q psy6093 65 VKDNIATLKP-EWISLANAKQRRGRAGRVQ-EGVCYHLYS 102 (350)
Q Consensus 65 ~~~~~~~l~~-~~iSka~~~QR~GRaGR~~-~G~c~rLyt 102 (350)
..+|+.++.+ .+-|+--=.|-+|||||.+ ||.+-...|
T Consensus 532 ~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lS 571 (830)
T PRK12904 532 EAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLS 571 (830)
T ss_pred HcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEE
Confidence 1244444433 2456666679999999998 887644333
No 117
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=93.76 E-value=0.13 Score=57.34 Aligned_cols=82 Identities=13% Similarity=0.091 Sum_probs=59.8
Q ss_pred cceeeeccCCCCCHHHHHHh---cc-C--CCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccH
Q psy6093 6 QIWFLQCPSSGLKHLQNKSV---FE-L--GVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISL 79 (350)
Q Consensus 6 ~~~~~~~lHs~l~~~~q~~v---f~-~--g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSk 79 (350)
.++..+.+||+++.++|+.+ |. + +..-+++||..+..||++....+||- ||+.= +-
T Consensus 510 ~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi--------yD~dW----------NP 571 (1033)
T PLN03142 510 RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL--------YDSDW----------NP 571 (1033)
T ss_pred cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE--------eCCCC----------Ch
Confidence 36777788999999998888 43 2 23457899999999999999999996 55431 22
Q ss_pred hhHHhhhccCCCC---CCceEEEcccccc
Q psy6093 80 ANAKQRRGRAGRV---QEGVCYHLYSRAR 105 (350)
Q Consensus 80 a~~~QR~GRaGR~---~~G~c~rLyt~~~ 105 (350)
+.-.|+.|||-|- .+=.+|||+++..
T Consensus 572 ~~d~QAidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 572 QVDLQAQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred HHHHHHHHHhhhcCCCceEEEEEEEeCCc
Confidence 3345666665554 4567999999864
No 118
>KOG0337|consensus
Probab=93.29 E-value=0.094 Score=52.43 Aligned_cols=79 Identities=22% Similarity=0.170 Sum_probs=54.8
Q ss_pred ceeeeccCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCC-cceeeeecCCCccccccccccHhhH
Q psy6093 7 IWFLQCPSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGK-TKMSNFDVKDNIATLKPEWISLANA 82 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~-~k~~~yd~~~~~~~l~~~~iSka~~ 82 (350)
+...-.+||+|.++.|+.- |..++-.+.+.|++|..|++||...-||+--+ .+.+.|-
T Consensus 285 g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFv------------------ 346 (529)
T KOG0337|consen 285 GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFV------------------ 346 (529)
T ss_pred CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEE------------------
Confidence 3344456899999988844 33666789999999999999999999997333 2222222
Q ss_pred HhhhccCCCCC-CceEEEccccc
Q psy6093 83 KQRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 83 ~QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
.|.||+.|.+ .|..|-+....
T Consensus 347 -hRVgr~aragrtg~aYs~V~~~ 368 (529)
T KOG0337|consen 347 -HRVGRVARAGRTGRAYSLVAST 368 (529)
T ss_pred -EEecchhhccccceEEEEEecc
Confidence 2666655544 57888876653
No 119
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=91.44 E-value=0.16 Score=55.28 Aligned_cols=49 Identities=35% Similarity=0.432 Sum_probs=34.3
Q ss_pred ceEEEecCccccCCCCCC---cc-----EEEeCCCcceeeeecCCCccccccccccHhhHHhhhccCCCCC-CceE
Q psy6093 31 RKIVLATNIAETSITIDD---IV-----YVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRVQ-EGVC 97 (350)
Q Consensus 31 rkvIlaTniaEtsvtip~---v~-----~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~-~G~c 97 (350)
-.|.+|||.|..|.+|.= |. |||-+.+. -|+--=.|-+|||||.+ ||.+
T Consensus 475 GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerh------------------eSrRIDnQLrGRaGRQGDpGss 532 (925)
T PRK12903 475 GAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKA------------------ESRRIDNQLRGRSGRQGDVGES 532 (925)
T ss_pred CeEEEecccccCCcCccCchhHHHcCCcEEEecccC------------------chHHHHHHHhcccccCCCCCcc
Confidence 469999999999998862 22 66644322 22222358999999998 8865
No 120
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=90.44 E-value=0.25 Score=54.83 Aligned_cols=46 Identities=26% Similarity=0.220 Sum_probs=35.1
Q ss_pred CCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccCCCCCCc
Q psy6093 29 GVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRVQEG 95 (350)
Q Consensus 29 g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G 95 (350)
+...|||||.+.|.|++++ .+.+| +.+.|-.+..||+||..|.+.+
T Consensus 837 ~~~~i~v~Tqv~E~g~D~d-fd~~~--------------------~~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHD-YDWAI--------------------ADPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred CCCeEEEEeeeEEEEeccc-CCeee--------------------eccCcHHHHHHHhhcccccccC
Confidence 4568999999999999996 33333 2345667889999999998743
No 121
>KOG0329|consensus
Probab=89.69 E-value=0.13 Score=48.50 Aligned_cols=53 Identities=23% Similarity=0.433 Sum_probs=42.7
Q ss_pred EEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccCCCCC-CceEEEccccc
Q psy6093 34 VLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 34 IlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
++|||+...|++|..|..|+| ||.... -.+|..|.|||||-+ .|..+...+.+
T Consensus 302 ~vat~lfgrgmdiervNi~~N--------Ydmp~~----------~DtYlHrv~rAgrfGtkglaitfvs~e 355 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFN--------YDMPED----------SDTYLHRVARAGRFGTKGLAITFVSDE 355 (387)
T ss_pred hHHhhhhccccCcccceeeec--------cCCCCC----------chHHHHHhhhhhccccccceeehhcch
Confidence 899999999999999999998 765543 345667999999987 57777766553
No 122
>KOG0385|consensus
Probab=88.80 E-value=1.1 Score=48.22 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=67.2
Q ss_pred ccceeeeccCCCCCHHHHHHhcc----CCCce--EEEecCccccCCCCCCccEEEeCCCcceeeeecCCCcccccccccc
Q psy6093 5 FQIWFLQCPSSGLKHLQNKSVFE----LGVRK--IVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWIS 78 (350)
Q Consensus 5 ~~~~~~~~lHs~l~~~~q~~vf~----~g~rk--vIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iS 78 (350)
++++..+.+-|+.+.++|....+ ++..| .+++|-.+.-||++-..+.||= ....+||..
T Consensus 509 ~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIl----yDSDWNPQ~----------- 573 (971)
T KOG0385|consen 509 LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVIL----YDSDWNPQV----------- 573 (971)
T ss_pred hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEE----ecCCCCchh-----------
Confidence 45888899999999999988854 55445 4678999999999998888882 011233332
Q ss_pred HhhHHhhhccCCCCCCceEEEcccccc
Q psy6093 79 LANAKQRRGRAGRVQEGVCYHLYSRAR 105 (350)
Q Consensus 79 ka~~~QR~GRaGR~~~G~c~rLyt~~~ 105 (350)
--+|.+|+-|.|-..|=+.|||.|++.
T Consensus 574 DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 574 DLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred hhHHHHHHHhhCCcCceEEEEEeccch
Confidence 346889999999999999999999864
No 123
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=88.70 E-value=0.34 Score=51.91 Aligned_cols=54 Identities=28% Similarity=0.363 Sum_probs=36.9
Q ss_pred ceEEEecCccccCCCCC----------Cc-----cEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccCCCCC-C
Q psy6093 31 RKIVLATNIAETSITID----------DI-----VYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRVQ-E 94 (350)
Q Consensus 31 rkvIlaTniaEtsvtip----------~v-----~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~-~ 94 (350)
-.|.||||.|..|.+|. +| -|||=+. .+-|+--=.|-+|||||.+ |
T Consensus 476 gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTe------------------rheSrRID~QLrGRaGRQGDp 537 (764)
T PRK12326 476 GAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTG------------------RHRSERLDNQLRGRAGRQGDP 537 (764)
T ss_pred CcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEecc------------------CCchHHHHHHHhcccccCCCC
Confidence 36999999999998875 12 1444332 2334445579999999998 8
Q ss_pred ceEEEccc
Q psy6093 95 GVCYHLYS 102 (350)
Q Consensus 95 G~c~rLyt 102 (350)
|.+-...+
T Consensus 538 Gss~f~lS 545 (764)
T PRK12326 538 GSSVFFVS 545 (764)
T ss_pred CceeEEEE
Confidence 87644433
No 124
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=87.82 E-value=0.48 Score=52.53 Aligned_cols=49 Identities=29% Similarity=0.432 Sum_probs=35.3
Q ss_pred eEEEecCccccCCCCC---Cc-----cEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccCCCCC-CceEE
Q psy6093 32 KIVLATNIAETSITID---DI-----VYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRVQ-EGVCY 98 (350)
Q Consensus 32 kvIlaTniaEtsvtip---~v-----~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~-~G~c~ 98 (350)
.|.+|||.|..|-+|. +| -|||-+.+ .-|+--=.|-+|||||.+ ||.+-
T Consensus 678 aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTer------------------heSrRID~QLrGRaGRQGDPGsS~ 735 (1112)
T PRK12901 678 TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTER------------------HESRRVDRQLRGRAGRQGDPGSSQ 735 (1112)
T ss_pred cEEEeccCcCCCcCcccchhhHHcCCCEEEEccC------------------CCcHHHHHHHhcccccCCCCCcce
Confidence 6999999999998886 22 35554333 234444568999999998 88753
No 125
>KOG0346|consensus
Probab=87.37 E-value=0.52 Score=47.58 Aligned_cols=77 Identities=23% Similarity=0.275 Sum_probs=54.5
Q ss_pred eeeccCCCCCHHHHHHhcc---CCCceEEEecCcc-----------------------------------ccCCCCCCcc
Q psy6093 9 FLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIA-----------------------------------ETSITIDDIV 50 (350)
Q Consensus 9 ~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTnia-----------------------------------Etsvtip~v~ 50 (350)
.-+-|-|.||..-|.-+.+ .|.-.+|+||+.- ..||++..|.
T Consensus 294 ksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~ 373 (569)
T KOG0346|consen 294 KSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVS 373 (569)
T ss_pred HhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchhee
Confidence 3344588999888776644 8999999999921 1346677777
Q ss_pred EEEeCCCcceeeeecCCCccccccccccHhhHHhhhccCCCCC-CceEEEcccc
Q psy6093 51 YVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRVQ-EGVCYHLYSR 103 (350)
Q Consensus 51 ~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~-~G~c~rLyt~ 103 (350)
.||| ||- |-+-.+|..|+||++|.. +|....+...
T Consensus 374 ~VlN--------FD~----------P~t~~sYIHRvGRTaRg~n~GtalSfv~P 409 (569)
T KOG0346|consen 374 NVLN--------FDF----------PETVTSYIHRVGRTARGNNKGTALSFVSP 409 (569)
T ss_pred eeee--------cCC----------CCchHHHHHhccccccCCCCCceEEEecc
Confidence 7776 333 334556788999999986 7987776554
No 126
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=86.21 E-value=0.59 Score=51.28 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.9
Q ss_pred ceEEEecCccccCCCCC
Q psy6093 31 RKIVLATNIAETSITID 47 (350)
Q Consensus 31 rkvIlaTniaEtsvtip 47 (350)
-.|.||||.|..|.+|.
T Consensus 498 GaVTIATNMAGRGTDIk 514 (913)
T PRK13103 498 GALTIATNMAGRGTDIL 514 (913)
T ss_pred CcEEEeccCCCCCCCEe
Confidence 46999999999998883
No 127
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=83.70 E-value=1.7 Score=44.98 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=63.7
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
+..+-.+||.+..-||..+.. .|.--|+|--|.+--|++||.|..|-- .|... .-..=|-.|..
T Consensus 470 gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAI--------lDADK-----eGFLRse~SLI 536 (663)
T COG0556 470 GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI--------LDADK-----EGFLRSERSLI 536 (663)
T ss_pred CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEE--------eecCc-----cccccccchHH
Confidence 778888899999999999976 899999999999999999999998862 22221 01112556778
Q ss_pred hhhccCCCCCCceEEE
Q psy6093 84 QRRGRAGRVQEGVCYH 99 (350)
Q Consensus 84 QR~GRaGR~~~G~c~r 99 (350)
|=.|||.|.-.|+.+-
T Consensus 537 QtIGRAARN~~GkvIl 552 (663)
T COG0556 537 QTIGRAARNVNGKVIL 552 (663)
T ss_pred HHHHHHhhccCCeEEE
Confidence 9999999999998753
No 128
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=82.90 E-value=0.95 Score=49.88 Aligned_cols=61 Identities=23% Similarity=0.227 Sum_probs=37.1
Q ss_pred ceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCcccccc-ccccHhhHHhhhccCCCCC-CceEEEccc
Q psy6093 31 RKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKP-EWISLANAKQRRGRAGRVQ-EGVCYHLYS 102 (350)
Q Consensus 31 rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~-~~iSka~~~QR~GRaGR~~-~G~c~rLyt 102 (350)
-.|.||||.|..|.+|.==.-|. ..+|+.+..+ .+-|+--=.|-+|||||.+ ||.+-...+
T Consensus 617 g~VTIATNmAGRGTDIkl~~~v~-----------~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lS 679 (970)
T PRK12899 617 GAVTVATNMAGRGTDIKLDEEAV-----------AVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLS 679 (970)
T ss_pred CcEEEeeccccCCcccccCchHH-----------hcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEE
Confidence 46999999999998884111111 0122222221 2235555679999999998 897644444
No 129
>KOG0391|consensus
Probab=80.25 E-value=4.3 Score=45.86 Aligned_cols=86 Identities=21% Similarity=0.195 Sum_probs=64.4
Q ss_pred ccceeeeccCCCCCHHHHHHhcc--CCCc---eEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccH
Q psy6093 5 FQIWFLQCPSSGLKHLQNKSVFE--LGVR---KIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISL 79 (350)
Q Consensus 5 ~~~~~~~~lHs~l~~~~q~~vf~--~g~r---kvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSk 79 (350)
|+++.-..|-|.-.-++|+...+ +..+ ..|++|--...||++-|.+.||- ||..-+ +.=-
T Consensus 1298 yHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvF--------YDsDwN-------PtMD 1362 (1958)
T KOG0391|consen 1298 YHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVF--------YDSDWN-------PTMD 1362 (1958)
T ss_pred hcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEE--------ecCCCC-------chhh
Confidence 44666666677777776665544 3233 56899999999999999999993 665432 2334
Q ss_pred hhHHhhhccCCCCCCceEEEcccccc
Q psy6093 80 ANAKQRRGRAGRVQEGVCYHLYSRAR 105 (350)
Q Consensus 80 a~~~QR~GRaGR~~~G~c~rLyt~~~ 105 (350)
++|.-|.-|.|+++.=+.|||.++..
T Consensus 1363 aQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1363 AQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred hHHHHHHHhhcCccceEEEEeeccch
Confidence 77889999999999999999999854
No 130
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=77.29 E-value=1.9 Score=47.25 Aligned_cols=22 Identities=41% Similarity=0.388 Sum_probs=16.7
Q ss_pred ccHhhHHhhhccCCCCC-CceEE
Q psy6093 77 ISLANAKQRRGRAGRVQ-EGVCY 98 (350)
Q Consensus 77 iSka~~~QR~GRaGR~~-~G~c~ 98 (350)
-|+-==.|-+|||||.+ ||..-
T Consensus 603 eSrRIDnQLrGRaGRQGDPG~s~ 625 (870)
T CHL00122 603 ESRRIDNQLRGRAGRQGDPGSSR 625 (870)
T ss_pred chHHHHHHHhccccCCCCCCcce
Confidence 35555579999999998 88643
No 131
>KOG1123|consensus
Probab=73.09 E-value=3.6 Score=42.46 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=47.6
Q ss_pred CCCCCHHHHHHhcc----CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccC
Q psy6093 14 SSGLKHLQNKSVFE----LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRA 89 (350)
Q Consensus 14 Hs~l~~~~q~~vf~----~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRa 89 (350)
||.-++.||.++++ +....-|+-.-++.||+++|...+.|-- ...--|+-+-.||.||.
T Consensus 569 YG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQI-----------------SSH~GSRRQEAQRLGRI 631 (776)
T KOG1123|consen 569 YGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQI-----------------SSHGGSRRQEAQRLGRI 631 (776)
T ss_pred ECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEE-----------------cccccchHHHHHHHHHH
Confidence 89999999999955 4555666666799999999999999841 11124677778999987
Q ss_pred CCCC
Q psy6093 90 GRVQ 93 (350)
Q Consensus 90 GR~~ 93 (350)
=|..
T Consensus 632 LRAK 635 (776)
T KOG1123|consen 632 LRAK 635 (776)
T ss_pred HHHh
Confidence 6654
No 132
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=72.12 E-value=5.4 Score=43.16 Aligned_cols=64 Identities=23% Similarity=0.340 Sum_probs=44.3
Q ss_pred ccCCCceEEEecCccccCCCCCCccEEE----eCCCcceeeeecCCCccccccccccHhhHHhhhccCCCC-CCceEEE
Q psy6093 26 FELGVRKIVLATNIAETSITIDDIVYVV----DCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRV-QEGVCYH 99 (350)
Q Consensus 26 f~~g~rkvIlaTniaEtsvtip~v~~VI----D~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~-~~G~c~r 99 (350)
|.+|+-.|++-|.+..-|.+.|+|+-|. |+|+-.. |.+.. +. .=.-..|=+|||||. .+|..+-
T Consensus 530 ~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~---DfRA~-Er------~fqll~QvaGRAgR~~~~G~VvI 598 (730)
T COG1198 530 FANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSP---DFRAS-ER------TFQLLMQVAGRAGRAGKPGEVVI 598 (730)
T ss_pred HhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCC---CcchH-HH------HHHHHHHHHhhhccCCCCCeEEE
Confidence 4488899999999999999999999776 6555321 11111 00 112245889999998 5887664
No 133
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=68.73 E-value=11 Score=41.21 Aligned_cols=89 Identities=18% Similarity=0.208 Sum_probs=60.1
Q ss_pred CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccCCCCCC--c------eEEE
Q psy6093 28 LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRVQE--G------VCYH 99 (350)
Q Consensus 28 ~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~--G------~c~r 99 (350)
..-.+|.++-+..-|||++|.|.-+| |+... -||.-++|+.||.=|.+| | ..|-
T Consensus 479 e~~P~IaitvdlL~TGiDvpev~nlV---------F~r~V---------rSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ 540 (875)
T COG4096 479 EKYPRIAITVDLLTTGVDVPEVVNLV---------FDRKV---------RSKTKFKQMVGRGTRLCPDLGGPEQDKEFFT 540 (875)
T ss_pred CCCCceEEehhhhhcCCCchheeeee---------ehhhh---------hhHHHHHHHhcCccccCccccCccccceeEE
Confidence 44568999999999999999999887 22211 488899999999999874 2 1334
Q ss_pred cccc---cccccccCCCCccccccchHHHHHHHhhccC
Q psy6093 100 LYSR---AREQTFQDYPLPEIQRTRLDEVVRTLESKKF 134 (350)
Q Consensus 100 Lyt~---~~~~~~~~~~~pEi~r~~L~~~~L~~k~~~~ 134 (350)
++.- -.|-.+.+...++-.+.+|+.=++.......
T Consensus 541 ifDf~~~~~~~~~~~~~~e~~~~~~l~~rLF~~~~~~~ 578 (875)
T COG4096 541 IFDFVDNTEYFEMDPEMREGRVRVSLEQRLFADRLFDL 578 (875)
T ss_pred EEEhhhhhhhhccCcccccccccchHHHHHhhhhhccC
Confidence 4332 1244566666666777777665554444433
No 134
>KOG0392|consensus
Probab=68.14 E-value=7 Score=44.33 Aligned_cols=79 Identities=15% Similarity=0.218 Sum_probs=59.9
Q ss_pred ccCCCCCHHHHHHh---cc--CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhh
Q psy6093 12 CPSSGLKHLQNKSV---FE--LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRR 86 (350)
Q Consensus 12 ~lHs~l~~~~q~~v---f~--~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 86 (350)
.|-|++||.+|+++ |. |..--.+++|-+..-|+++-|.+.||= -+-.+||-+. -+|.-||
T Consensus 1372 RLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVF----vEHDWNPMrD-----------LQAMDRA 1436 (1549)
T KOG0392|consen 1372 RLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVF----VEHDWNPMRD-----------LQAMDRA 1436 (1549)
T ss_pred EecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEE----EecCCCchhh-----------HHHHHHH
Confidence 45799999999988 44 444567889999999999999999992 0111444333 3567799
Q ss_pred ccCCCCCCceEEEcccccc
Q psy6093 87 GRAGRVQEGVCYHLYSRAR 105 (350)
Q Consensus 87 GRaGR~~~G~c~rLyt~~~ 105 (350)
-|.|-.+-=-.|||.++..
T Consensus 1437 HRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1437 HRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred HhhcCceeeeeeeehhccc
Confidence 9999888777999998864
No 135
>KOG0390|consensus
Probab=64.15 E-value=20 Score=39.06 Aligned_cols=84 Identities=14% Similarity=0.095 Sum_probs=61.1
Q ss_pred cceeeeccCCCCCHHHHHHh---cc-C-CCceEE-EecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccH
Q psy6093 6 QIWFLQCPSSGLKHLQNKSV---FE-L-GVRKIV-LATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISL 79 (350)
Q Consensus 6 ~~~~~~~lHs~l~~~~q~~v---f~-~-g~rkvI-laTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSk 79 (350)
+|+.++.|||.++..+|+++ |. + +.-+|. +||-...-||++=|..-||= ||+.=+ |.--
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil--------~D~dWN-------Pa~d 682 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL--------FDPDWN-------PAVD 682 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE--------eCCCCC-------chhH
Confidence 37888899999999999998 44 3 332555 55777788999887776662 444322 2223
Q ss_pred hhHHhhhccCCCCCCceEEEccccc
Q psy6093 80 ANAKQRRGRAGRVQEGVCYHLYSRA 104 (350)
Q Consensus 80 a~~~QR~GRaGR~~~G~c~rLyt~~ 104 (350)
.+|.=|+-|-|-.+|-..|||.+..
T Consensus 683 ~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 683 QQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred HHHHHHhccCCCcceEEEEEeecCC
Confidence 4566799999999999999998875
No 136
>KOG0384|consensus
Probab=63.52 E-value=8.6 Score=43.53 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=73.4
Q ss_pred ceeeeccCCCCCHHHHHHhcc----CCC--ceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHh
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE----LGV--RKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLA 80 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~----~g~--rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka 80 (350)
++.-..|-|+++.+.|+.+.+ ++. --.++||=...-||++-..+.||-+ ..-+||...+
T Consensus 723 ~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIF----DSDWNPQNDL----------- 787 (1373)
T KOG0384|consen 723 GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIF----DSDWNPQNDL----------- 787 (1373)
T ss_pred CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEe----CCCCCcchHH-----------
Confidence 677788899999999988854 433 4578999999999999988888831 1234554432
Q ss_pred hHHhhhccCCCCCCceEEEcccccccc-cccCCCCccccccchHHHHHHH
Q psy6093 81 NAKQRRGRAGRVQEGVCYHLYSRAREQ-TFQDYPLPEIQRTRLDEVVRTL 129 (350)
Q Consensus 81 ~~~QR~GRaGR~~~G~c~rLyt~~~~~-~~~~~~~pEi~r~~L~~~~L~~ 129 (350)
+|.-|+-|.|-...=..|||.|+..++ .+-+.. -++.-|+.+|+|.
T Consensus 788 QAqARaHRIGQkk~VnVYRLVTk~TvEeEilERA---k~KmvLD~aVIQ~ 834 (1373)
T KOG0384|consen 788 QAQARAHRIGQKKHVNVYRLVTKNTVEEEILERA---KLKMVLDHAVIQR 834 (1373)
T ss_pred HHHHHHHhhcccceEEEEEEecCCchHHHHHHHH---HHHhhhHHHHHHh
Confidence 355699999988888899999997653 121111 1345566777664
No 137
>KOG0389|consensus
Probab=63.31 E-value=14 Score=40.12 Aligned_cols=82 Identities=16% Similarity=0.233 Sum_probs=61.4
Q ss_pred ceeeeccCCCCCHHHHHHhcc-----CCCceEEEecCccccCCCCCCccEEE--eCCCcceeeeecCCCccccccccccH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE-----LGVRKIVLATNIAETSITIDDIVYVV--DCGKTKMSNFDVKDNIATLKPEWISL 79 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~-----~g~rkvIlaTniaEtsvtip~v~~VI--D~G~~k~~~yd~~~~~~~l~~~~iSk 79 (350)
++.-..|-|+-+-.+|+.+.. ...-=+++||-...-||++-....|| |+ .|||...
T Consensus 801 ~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~------dFNP~dD----------- 863 (941)
T KOG0389|consen 801 GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDI------DFNPYDD----------- 863 (941)
T ss_pred CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeec------CCCCccc-----------
Confidence 344455667777777776643 33445788999999999998888887 43 3555443
Q ss_pred hhHHhhhccCCCCCCceEEEcccccc
Q psy6093 80 ANAKQRRGRAGRVQEGVCYHLYSRAR 105 (350)
Q Consensus 80 a~~~QR~GRaGR~~~G~c~rLyt~~~ 105 (350)
-+|+-|+-|.|-++|=..|||.|+..
T Consensus 864 ~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 864 KQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred chhHHHHHhhCCcceeEEEEEEecCc
Confidence 36888999999999999999999864
No 138
>PF13871 Helicase_C_4: Helicase_C-like
Probab=51.34 E-value=64 Score=30.90 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=44.1
Q ss_pred HhccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccCCCCC
Q psy6093 24 SVFELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRVQ 93 (350)
Q Consensus 24 ~vf~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~ 93 (350)
+.|..|...|+|-+..+.||+++..=.-|-| .+..+..+...+-|-..+.|--||+-|+.
T Consensus 55 ~~F~~g~k~v~iis~AgstGiSlHAd~~~~n----------qr~Rv~i~le~pwsad~aiQ~~GR~hRsn 114 (278)
T PF13871_consen 55 QAFMDGEKDVAIISDAGSTGISLHADRRVKN----------QRRRVHITLELPWSADKAIQQFGRTHRSN 114 (278)
T ss_pred HHHhCCCceEEEEecccccccchhccccCCC----------CCceEEEEeeCCCCHHHHHHHhccccccc
Confidence 3577888899999999999999986333333 23333444556678889999999998875
No 139
>TIGR02647 DNA conserved hypothetical protein TIGR02647. Members of this family are found, so far, only in the Gammaproteobacteria. The function is unknown. The location on the chromosome usually is not far from housekeeping genes rather than in what is clearly, say, a prophage region. Some members have been annotated in public databases as DNA-binding protein inhibitor Id-2-related protein, putative transcriptional regulator, or hypothetical DNA binding protein.
Probab=50.41 E-value=14 Score=28.22 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHccCC--CCCCCHHHhhhcc
Q psy6093 166 ASVQLSLKLLRLIDALDD--DEHLTPLGYHLAK 196 (350)
Q Consensus 166 ~~i~~al~~L~~lgald~--~~~LT~lG~~ls~ 196 (350)
..+..|.+.|.+.|.|++ .|-||+.|...++
T Consensus 34 p~~i~a~~RLheKGLI~~pdGgyLT~~G~~~aE 66 (77)
T TIGR02647 34 PAAVAAAARLHEKGLTTQPDGGYLTSLGLEAAE 66 (77)
T ss_pred HHHHHHHHHHHHcCCccCCCCCEecHHHHHHHH
Confidence 457889999999999987 4689999988763
No 140
>KOG0388|consensus
Probab=41.54 E-value=63 Score=35.20 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=66.3
Q ss_pred cceeeeccCCCCCHHHHHHhc---c-CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhh
Q psy6093 6 QIWFLQCPSSGLKHLQNKSVF---E-LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLAN 81 (350)
Q Consensus 6 ~~~~~~~lHs~l~~~~q~~vf---~-~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~ 81 (350)
+++.-..|-|+...++|+.+. + +..--.+++|-...-||++-..+.||- ||..=+ |.--.+
T Consensus 1067 r~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViF--------YdSDWN-------PT~D~Q 1131 (1185)
T KOG0388|consen 1067 RGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIF--------YDSDWN-------PTADQQ 1131 (1185)
T ss_pred hccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEE--------ecCCCC-------cchhhH
Confidence 366667778889999988884 4 556667889999999999999999983 544322 233456
Q ss_pred HHhhhccCCCCCCceEEEcccccc
Q psy6093 82 AKQRRGRAGRVQEGVCYHLYSRAR 105 (350)
Q Consensus 82 ~~QR~GRaGR~~~G~c~rLyt~~~ 105 (350)
|.-|+-|-|-++.=..|||.++..
T Consensus 1132 AMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1132 AMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred HHHHHHhccCccceeeeeeccccc
Confidence 788999999999999999999864
No 141
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=39.69 E-value=17 Score=39.89 Aligned_cols=48 Identities=29% Similarity=0.417 Sum_probs=31.4
Q ss_pred eEEEecCccccCCCCC---Ccc--------EEEeCCCcceeeeecCCCccccccccccHhhHHhhhccCCCCC-CceE
Q psy6093 32 KIVLATNIAETSITID---DIV--------YVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRVQ-EGVC 97 (350)
Q Consensus 32 kvIlaTniaEtsvtip---~v~--------~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~-~G~c 97 (350)
-|=+|||.|..|-+|. +.. +||-+.+.-..+. =.|=+||+||.+ ||..
T Consensus 479 aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRI------------------DnQLRGRsGRQGDpG~S 538 (822)
T COG0653 479 AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRI------------------DNQLRGRAGRQGDPGSS 538 (822)
T ss_pred ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHH------------------HHHhhcccccCCCcchh
Confidence 5889999999998873 321 4554333222222 237899999998 7753
No 142
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=37.66 E-value=59 Score=35.25 Aligned_cols=83 Identities=14% Similarity=0.096 Sum_probs=62.9
Q ss_pred eeeeccCCCCCHHHHHHhcc---C--CCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhH
Q psy6093 8 WFLQCPSSGLKHLQNKSVFE---L--GVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANA 82 (350)
Q Consensus 8 ~~~~~lHs~l~~~~q~~vf~---~--g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~ 82 (350)
+....++|+.+.++|+...+ . +..-++++|-.+.+|+++-.-..||= ||+.-+ +.=..+|
T Consensus 736 ~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~--------~d~~wn-------p~~~~Qa 800 (866)
T COG0553 736 IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVIL--------FDPWWN-------PAVELQA 800 (866)
T ss_pred CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEE--------eccccC-------hHHHHHH
Confidence 45667799999888877754 3 45677788889999999998888883 554322 2234567
Q ss_pred HhhhccCCCCCCceEEEcccccc
Q psy6093 83 KQRRGRAGRVQEGVCYHLYSRAR 105 (350)
Q Consensus 83 ~QR~GRaGR~~~G~c~rLyt~~~ 105 (350)
..|+-|.|+.++=..||+.++..
T Consensus 801 ~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 801 IDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred HHHHHHhcCcceeEEEEeecCCc
Confidence 78999999999999999988865
No 143
>KOG3120|consensus
Probab=36.54 E-value=13 Score=34.48 Aligned_cols=84 Identities=17% Similarity=0.261 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCHHHhhhccCCCchhHHHHHHHhhhcCChhHHHHHhhhccccccccccccchhhhhhh
Q psy6093 166 ASVQLSLKLLRLIDALDDDEHLTPLGYHLAKLPLDPQIGKMLLMASIFSCVDPVFTVAASLGFKDAFYCPMIGKMLLMAS 245 (350)
Q Consensus 166 ~~i~~al~~L~~lgald~~~~LT~lG~~ls~Lpldp~~ak~ll~~~~~~C~~~~l~iaa~l~~~~~~~~~~~g~~~~~~~ 245 (350)
+-+...++.|.+.| -++-+.++.+-.+|+.|..-+++=.+...+|.+-+++- ..+. .+|+.++-.+.
T Consensus 57 e~M~rv~k~Lheqg-----v~~~~ik~~~r~iP~~Pgmv~lik~~ak~g~~eliIVS----DaNs----fFIe~~Lea~~ 123 (256)
T KOG3120|consen 57 ELMDRVFKELHEQG-----VRIAEIKQVLRSIPIVPGMVRLIKSAAKLGCFELIIVS----DANS----FFIEEILEAAG 123 (256)
T ss_pred HHHHHHHHHHHHcC-----CCHHHHHHHHhcCCCCccHHHHHHHHHhCCCceEEEEe----cCch----hHHHHHHHHcc
Confidence 33556666665443 45668999999999999999999999999996554332 1111 23677777777
Q ss_pred hcccCCccchhcccccC
Q psy6093 246 IFSCVDPVFTVAASLGF 262 (350)
Q Consensus 246 i~s~~~~~~~~aa~ls~ 262 (350)
+.+|++.++|+-+..-.
T Consensus 124 ~~d~F~~IfTNPa~~da 140 (256)
T KOG3120|consen 124 IHDLFSEIFTNPACVDA 140 (256)
T ss_pred HHHHHHHHhcCCcccCC
Confidence 77777777777655443
No 144
>PRK05580 primosome assembly protein PriA; Validated
Probab=34.46 E-value=42 Score=36.19 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=34.6
Q ss_pred eeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEE
Q psy6093 8 WFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVV 53 (350)
Q Consensus 8 ~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VI 53 (350)
..+..+||+++..++.+.+. .|..+|||+|.-+- -+.+.++..||
T Consensus 216 ~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liV 263 (679)
T PRK05580 216 APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLII 263 (679)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEE
Confidence 45667799999999988876 67789999998543 24567887766
No 145
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=33.58 E-value=41 Score=36.19 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=36.6
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCc-cccCCCCCCccEEE
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNI-AETSITIDDIVYVV 53 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTni-aEtsvtip~v~~VI 53 (350)
+..+..+||+++..+++.++. .|...|||+|+- ....+.++++.+||
T Consensus 338 ~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 338 GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 466778899999988888876 778899999973 34456678888777
No 146
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=31.03 E-value=63 Score=34.75 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=38.1
Q ss_pred cc-CCCceEEEecCccccCCCCCCccEEE-eCCCcceeeeecCCCccccccccccHhhHHhhhccCCCC-CCce
Q psy6093 26 FE-LGVRKIVLATNIAETSITIDDIVYVV-DCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRV-QEGV 96 (350)
Q Consensus 26 f~-~g~rkvIlaTniaEtsvtip~v~~VI-D~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~-~~G~ 96 (350)
|+ ++..+|++.++..-||++.|.+.+++ | .++.-....|..||+-|. .+|+
T Consensus 586 Fk~~~~~~ilIVvdmllTGFDaP~l~tLyld--------------------Kplk~h~LlQai~R~nR~~~~~K 639 (667)
T TIGR00348 586 FKKEENPKLLIVVDMLLTGFDAPILNTLYLD--------------------KPLKYHGLLQAIARTNRIDGKDK 639 (667)
T ss_pred hcCCCCceEEEEEcccccccCCCccceEEEe--------------------ccccccHHHHHHHHhccccCCCC
Confidence 54 56679999999999999999998776 3 122223467999999995 4543
No 147
>PF03288 Pox_D5: Poxvirus D5 protein-like; InterPro: IPR004968 This domain is found at the C terminus of phage P4 alpha protein and related proteins. Phage P4 DNA replication depends on the product of the alpha gene, which has origin recognition ability, DNA helicase activity, and DNA primase activity. The structure of the protein can be summarised as follows: The N terminus provides the primase activity, the central region is the helicase/nucleoside triphosphatase domain and the ori DNA recognition resides in the C-terminal 1/3 of the protein []. The domain is also found at the C terminus of a number of proteins from orthopox viruses including vaccinia virus D5. D5 encodes a 90kDa protein that is transiently expressed at early times after infection. It has an nucleoside triphosphatase activity which is independent of common nucleic acid cofactors and it can hydrolyse all the common ribo- and deoxyribonucleoside triphosphates to diphosphates in the presence of a divalent cation [].; PDB: 1KA8_E.
Probab=29.92 E-value=1.1e+02 Score=23.20 Aligned_cols=42 Identities=19% Similarity=0.365 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHHHHHHccChhHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Q psy6093 288 KSDYVVLINAMQGWEQALEHNYAHDYCRENFLTNNTLLLLRDMKDQFSRTMHE 340 (350)
Q Consensus 288 ~sDhltll~~f~~w~~~~~~~~~~~~C~~~~L~~~~l~~~~~lr~ql~~~l~~ 340 (350)
.++.+..-.+|..|+ .||.+|+... ...-....++|.+.+.+
T Consensus 18 ~~~~v~~~~lY~~Y~---------~wc~~ng~~~--~ls~~~F~~~L~~~~~~ 59 (86)
T PF03288_consen 18 PGDFVPSKDLYDAYK---------EWCEENGYKP--PLSKRKFGKELKQYFPE 59 (86)
T ss_dssp --S--TTTBHHHHHH---------HHHHHTT-S------HHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHH---------HHHHHhCCCc--ccCHHHHHHHHHHHhhh
Confidence 345555556777776 4999998887 23333445555555544
No 148
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=29.35 E-value=1.4e+02 Score=33.09 Aligned_cols=76 Identities=14% Similarity=0.038 Sum_probs=45.6
Q ss_pred HhccCCCceEEEecCccccCCCCCCcc--EEEeCCCcceeeeecC----------CCccccccc--cccHhhHHhhhccC
Q psy6093 24 SVFELGVRKIVLATNIAETSITIDDIV--YVVDCGKTKMSNFDVK----------DNIATLKPE--WISLANAKQRRGRA 89 (350)
Q Consensus 24 ~vf~~g~rkvIlaTniaEtsvtip~v~--~VID~G~~k~~~yd~~----------~~~~~l~~~--~iSka~~~QR~GRa 89 (350)
+-|+.+...|+++|+..--||++||.. .||=.|+.-..--||- .|-+..... |-.--..+|-.||.
T Consensus 719 ~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRl 798 (850)
T TIGR01407 719 KRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRL 798 (850)
T ss_pred HHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccc
Confidence 335577888999999999999999876 5555554432211110 111111111 11234578999999
Q ss_pred CCCC--CceEEE
Q psy6093 90 GRVQ--EGVCYH 99 (350)
Q Consensus 90 GR~~--~G~c~r 99 (350)
=|.. .|..+-
T Consensus 799 IRs~~D~G~v~i 810 (850)
T TIGR01407 799 IRRENDRGSIVI 810 (850)
T ss_pred cccCCceEEEEE
Confidence 8876 466553
No 149
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=28.88 E-value=32 Score=38.22 Aligned_cols=15 Identities=53% Similarity=0.736 Sum_probs=12.8
Q ss_pred HhhhccCCCCC-CceE
Q psy6093 83 KQRRGRAGRVQ-EGVC 97 (350)
Q Consensus 83 ~QR~GRaGR~~-~G~c 97 (350)
.|-+|||||.+ ||..
T Consensus 666 NQLRGRaGRQGDPGsS 681 (939)
T PRK12902 666 NQLRGRAGRQGDPGST 681 (939)
T ss_pred HHhhcccccCCCCCcc
Confidence 58999999998 8863
No 150
>PF03682 UPF0158: Uncharacterised protein family (UPF0158); InterPro: IPR005361 This is a small family of hypothetical bacterial proteins of unknown function.
Probab=28.76 E-value=44 Score=29.30 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHHHHHHHccChhHHHHHHccCCHHHHH
Q psy6093 289 SDYVVLINAMQGWEQALEHNYAHDYCRENFLTNNTLL 325 (350)
Q Consensus 289 sDhltll~~f~~w~~~~~~~~~~~~C~~~~L~~~~l~ 325 (350)
.||-.+...|.+|++.........||.+|+|..-.=+
T Consensus 109 ~~~~~~~e~Wy~F~~~~~r~~a~eWleen~I~~~~~~ 145 (163)
T PF03682_consen 109 SEYPELRERWYAFREERLRERAIEWLEENGIEPVFEE 145 (163)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 3556667777777766555677889999999874433
No 151
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=28.36 E-value=47 Score=25.84 Aligned_cols=33 Identities=9% Similarity=0.094 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHHHccCCC--C--CCCHHHhhhc
Q psy6093 163 PDPASVQLSLKLLRLIDALDDD--E--HLTPLGYHLA 195 (350)
Q Consensus 163 P~~~~i~~al~~L~~lgald~~--~--~LT~lG~~ls 195 (350)
+-...+.-|+..|+..|+|+.. | +||+.|+.+.
T Consensus 52 ~~~~ri~Wa~~~L~~aGli~~~~rG~~~iT~~G~~~l 88 (92)
T PF14338_consen 52 RFKNRIRWARSYLKKAGLIERPKRGIWRITEKGRKAL 88 (92)
T ss_pred hHHHhHHHHHHHHHHCCCccCCCCCceEECHhHHHHH
Confidence 4456789999999999999874 3 8999998753
No 152
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=27.64 E-value=1.9e+02 Score=22.46 Aligned_cols=63 Identities=16% Similarity=0.098 Sum_probs=39.4
Q ss_pred CCccccccchHHHHHHHhh-ccCccch---hhHhhhhccccCCccccCccCCCCCCHHHHHHHHHHHHHHHccCC
Q psy6093 113 PLPEIQRTRLDEVVRTLES-KKFKMVS---RRFKVMLNTAFTPYVWVPKQVLDPPDPASVQLSLKLLRLIDALDD 183 (350)
Q Consensus 113 ~~pEi~r~~L~~~~L~~k~-~~~~~~~---~~f~~~l~~~~~p~~~~l~~~~~pP~~~~i~~al~~L~~lgald~ 183 (350)
+.+..+..||.+++..+.. ++-...+ +..-+-|.+.| +-+.+|+.+.+..++..|..-+.|=.
T Consensus 3 pi~Q~qfiPL~EvlC~~I~dln~~~~~at~E~l~~~L~~~y--------p~i~~Ps~e~l~~~L~~Li~erkIY~ 69 (80)
T PF10264_consen 3 PISQSQFIPLPEVLCWVISDLNAAGQPATQETLREHLRKHY--------PGIAIPSQEVLYNTLGTLIKERKIYH 69 (80)
T ss_pred ccccccceeHHHHHHHHHHHHhccCCcchHHHHHHHHHHhC--------CCCCCCCHHHHHHHHHHHHHcCceee
Confidence 4566677888887765433 2221110 11112244444 44789999999999999998877743
No 153
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.05 E-value=63 Score=33.52 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=33.2
Q ss_pred eeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEE
Q psy6093 9 FLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVV 53 (350)
Q Consensus 9 ~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VI 53 (350)
.+..+||+++..++.+.+. .|.-+|||+|.-+- -.-++++..||
T Consensus 52 ~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal-f~p~~~l~lII 98 (505)
T TIGR00595 52 QVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL-FLPFKNLGLII 98 (505)
T ss_pred cEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH-cCcccCCCEEE
Confidence 3556799999999988876 67789999997543 23466777666
No 154
>PRK05255 hypothetical protein; Provisional
Probab=25.96 E-value=74 Score=28.24 Aligned_cols=50 Identities=26% Similarity=0.307 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHccCCCCCCCHHH-hhhccCCCchhHHHHHHHhhhc
Q psy6093 159 VLDPPDPASVQLSLKLLRLIDALDDDEHLTPLG-YHLAKLPLDPQIGKMLLMASIF 213 (350)
Q Consensus 159 ~~~pP~~~~i~~al~~L~~lgald~~~~LT~lG-~~ls~Lpldp~~ak~ll~~~~~ 213 (350)
-++.|+.+.+......|..+| .+|+.|+ ..+..||++..+-..|+.+-..
T Consensus 13 ~~~~~SKSq~KRe~~alq~LG-----~~L~~Ls~~ql~~lpL~e~L~~Ai~ea~ri 63 (171)
T PRK05255 13 EIIWVSKSQIKRDAEALQDLG-----EELVELSKDQLAKLPLDEDLRDAILEAQRI 63 (171)
T ss_pred cccCCChHHHHHHHHHHHHHH-----HHHHhCCHHHHhcCCCCHHHHHHHHHHhhh
Confidence 356789999999999999998 5677776 5788999999999999888655
No 155
>PRK14873 primosome assembly protein PriA; Provisional
Probab=25.67 E-value=56 Score=35.21 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=32.3
Q ss_pred eeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEE
Q psy6093 9 FLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVV 53 (350)
Q Consensus 9 ~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VI 53 (350)
.+..+||++++.++.+.|. .|..+|||-|=-|- -.-+++...||
T Consensus 216 ~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv-FaP~~~LgLII 262 (665)
T PRK14873 216 DVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV-FAPVEDLGLVA 262 (665)
T ss_pred cEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE-EeccCCCCEEE
Confidence 3566899999999999987 88889999985332 22344666555
No 156
>KOG0339|consensus
Probab=24.77 E-value=64 Score=33.73 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=34.7
Q ss_pred ceeeeccCCCCCHHHHHHhccCCCceEEEecCc------cccCCCCCCccEEE
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFELGVRKIVLATNI------AETSITIDDIVYVV 53 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~~g~rkvIlaTni------aEtsvtip~v~~VI 53 (350)
+..++|+|+|.|.-+|-+-++.|. -+||||+- ---++++-.|.|.|
T Consensus 324 gl~~v~~ygGgsk~eQ~k~Lk~g~-EivVaTPgRlid~VkmKatn~~rvS~LV 375 (731)
T KOG0339|consen 324 GLRVVAVYGGGSKWEQSKELKEGA-EIVVATPGRLIDMVKMKATNLSRVSYLV 375 (731)
T ss_pred cceEEEeecCCcHHHHHHhhhcCC-eEEEechHHHHHHHHhhcccceeeeEEE
Confidence 567788899999999999998443 69999971 12346677777766
No 157
>PRK14873 primosome assembly protein PriA; Provisional
Probab=24.12 E-value=1.2e+02 Score=32.79 Aligned_cols=62 Identities=11% Similarity=-0.002 Sum_probs=34.8
Q ss_pred CCceEEEecCccccCCCCCCccEEE----eCCCcceeeeecCCCccccccccccHhhHHhhhccCCCCC-CceEEEcc
Q psy6093 29 GVRKIVLATNIAETSITIDDIVYVV----DCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRVQ-EGVCYHLY 101 (350)
Q Consensus 29 g~rkvIlaTniaEtsvtip~v~~VI----D~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~-~G~c~rLy 101 (350)
++-.|+|+|.-||--+. ++++.|+ |.++.. ..|...... -.-..|=+|||||.. +|..+-.+
T Consensus 470 ~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~-pDfRA~Er~---------~qll~qvagragr~~~~G~V~iq~ 536 (665)
T PRK14873 470 AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGR-QDLRAAEDT---------LRRWMAAAALVRPRADGGQVVVVA 536 (665)
T ss_pred cCCCEEEECCCCccccc-CCceEEEEEcchhhhcC-CCcChHHHH---------HHHHHHHHHhhcCCCCCCEEEEEe
Confidence 45679999985544444 5677664 333322 122211111 122357899999965 78777643
No 158
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=24.05 E-value=47 Score=25.70 Aligned_cols=36 Identities=25% Similarity=0.212 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHccCCC----------CCCCHHHhhhc
Q psy6093 160 LDPPDPASVQLSLKLLRLIDALDDD----------EHLTPLGYHLA 195 (350)
Q Consensus 160 ~~pP~~~~i~~al~~L~~lgald~~----------~~LT~lG~~ls 195 (350)
+..-++..+...++.|.+.|.|... ..||+.|+.+.
T Consensus 28 l~~is~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 28 LPGISPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp STTS-HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence 4455788899999999999999642 37999998775
No 159
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=23.63 E-value=43 Score=25.24 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHHHccCCCC---CCCHHHhhhc
Q psy6093 164 DPASVQLSLKLLRLIDALDDDE---HLTPLGYHLA 195 (350)
Q Consensus 164 ~~~~i~~al~~L~~lgald~~~---~LT~lG~~ls 195 (350)
+...+...++.|.+.|+|..++ .||+.|+.+.
T Consensus 32 ~~~~~~~yL~~L~~~gLI~~~~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 32 NYSTLKKYLKELEEKGLIKKKDGKYRLTEKGKEFL 66 (77)
T ss_dssp -HHHHHHHHHHHHHTTSEEEETTEEEE-HHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCeeCCCCEEEECccHHHHH
Confidence 5677999999999999997643 8999998764
No 160
>COG4889 Predicted helicase [General function prediction only]
Probab=23.59 E-value=80 Score=35.33 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=55.8
Q ss_pred ccceeeeccC--CCCCHHHHHHhcc------CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCcccccccc
Q psy6093 5 FQIWFLQCPS--SGLKHLQNKSVFE------LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEW 76 (350)
Q Consensus 5 ~~~~~~~~lH--s~l~~~~q~~vf~------~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~ 76 (350)
|.+..+.+=| |.|...+|.+..+ +..-||+----++--||++|..+-||= +||+..|
T Consensus 495 ~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF--------f~pr~sm------- 559 (1518)
T COG4889 495 FKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF--------FDPRSSM------- 559 (1518)
T ss_pred CCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEE--------ecCchhH-------
Confidence 4555555555 8899888865533 455577666667888999999999994 7887543
Q ss_pred ccHhhHHhhhccCCCCCCceEE
Q psy6093 77 ISLANAKQRRGRAGRVQEGVCY 98 (350)
Q Consensus 77 iSka~~~QR~GRaGR~~~G~c~ 98 (350)
-...|-.||.-|..+|+-|
T Consensus 560 ---VDIVQaVGRVMRKa~gK~y 578 (1518)
T COG4889 560 ---VDIVQAVGRVMRKAKGKKY 578 (1518)
T ss_pred ---HHHHHHHHHHHHhCcCCcc
Confidence 3457899999999998744
No 161
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=22.59 E-value=78 Score=22.46 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHHHccCC-----CC-----CCCHHH
Q psy6093 164 DPASVQLSLKLLRLIDALDD-----DE-----HLTPLG 191 (350)
Q Consensus 164 ~~~~i~~al~~L~~lgald~-----~~-----~LT~lG 191 (350)
+..++..+++.|.+.|.|+. ++ .||+.|
T Consensus 31 ~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 31 SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp -HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 44668899999999999942 22 678876
No 162
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=21.14 E-value=75 Score=30.16 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHccCCCC---CCCHHHhhhc
Q psy6093 166 ASVQLSLKLLRLIDALDDDE---HLTPLGYHLA 195 (350)
Q Consensus 166 ~~i~~al~~L~~lgald~~~---~LT~lG~~ls 195 (350)
.++..-++.|.+.|.|..++ +||++|+.+.
T Consensus 41 ~ai~pqiKkL~~~~LV~~~~~~Y~LS~~G~iiv 73 (260)
T COG4742 41 SAILPQIKKLKDKGLVVQEGDRYSLSSLGKIIV 73 (260)
T ss_pred HHHHHHHHHHhhCCCEEecCCEEEecchHHHHH
Confidence 56888899999999998765 8999999886
No 163
>KOG0387|consensus
Probab=20.46 E-value=2.4e+02 Score=31.21 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=59.2
Q ss_pred ceeeeccCCCCCHHHHHHh---cc--CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhh
Q psy6093 7 IWFLQCPSSGLKHLQNKSV---FE--LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLAN 81 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~v---f~--~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~ 81 (350)
++.-+.+-|.=|...|+.+ |. +...=.+++|-+..-|+++-+..=||- |||.=+ |-.-.+
T Consensus 571 ~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII--------fDPdWN-------PStD~Q 635 (923)
T KOG0387|consen 571 GYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVII--------FDPDWN-------PSTDNQ 635 (923)
T ss_pred CceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEE--------ECCCCC-------CccchH
Confidence 4555555677777777666 44 233345778999999999977665552 555432 223467
Q ss_pred HHhhhccCCCCCCceEEEcccccc
Q psy6093 82 AKQRRGRAGRVQEGVCYHLYSRAR 105 (350)
Q Consensus 82 ~~QR~GRaGR~~~G~c~rLyt~~~ 105 (350)
|+-|+-|-|-...=..|||.+...
T Consensus 636 AreRawRiGQkkdV~VYRL~t~gT 659 (923)
T KOG0387|consen 636 ARERAWRIGQKKDVVVYRLMTAGT 659 (923)
T ss_pred HHHHHHhhcCccceEEEEEecCCc
Confidence 889999999999889999998753
No 164
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=20.41 E-value=52 Score=27.28 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=30.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHccCCC----------CCCCHHHhhhc
Q psy6093 158 QVLDPPDPASVQLSLKLLRLIDALDDD----------EHLTPLGYHLA 195 (350)
Q Consensus 158 ~~~~pP~~~~i~~al~~L~~lgald~~----------~~LT~lG~~ls 195 (350)
..+..-++..+.+-++.|.+.|.+... ..||++|+-+.
T Consensus 44 r~i~~Is~k~Ls~~Lk~Le~~Glv~R~~~~~~PprveY~LT~~G~~L~ 91 (120)
T COG1733 44 RSIGGISPKMLSRRLKELEEDGLVERVVYPEEPPRVEYRLTEKGRDLL 91 (120)
T ss_pred HHccccCHHHHHHHHHHHHHCCCEEeeecCCCCceeEEEEhhhHHHHH
Confidence 445556889999999999999999753 27999998765
No 165
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=20.40 E-value=1.1e+02 Score=24.13 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHHHccCCC------C------CCCHHHhhhc
Q psy6093 162 PPDPASVQLSLKLLRLIDALDDD------E------HLTPLGYHLA 195 (350)
Q Consensus 162 pP~~~~i~~al~~L~~lgald~~------~------~LT~lG~~ls 195 (350)
+++...+..+++.|.+.|.|... + .||+.|+...
T Consensus 36 ~i~~gtlY~~L~rLe~~GlI~~~~~~~~~~~~rk~y~iT~~Gr~~l 81 (100)
T TIGR03433 36 QVEEGSLYPALHRLERRGWIAAEWGESENNRRAKFYRLTAAGRKQL 81 (100)
T ss_pred ccCCCcHHHHHHHHHHCCCeEEEeeecCCCCCceEEEECHHHHHHH
Confidence 45557799999999999999741 1 6888887654
No 166
>PF01090 Ribosomal_S19e: Ribosomal protein S19e; InterPro: IPR001266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes a number of eukaryotic and archaebacterial ribosomal proteins; mammalian S19, Drosophila S19, Ascaris lumbricoides S19g (ALEP-1) and S19s, yeast YS16 (RP55A and RP55B), Aspergillus S16 and Haloarcula marismortui HS12.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZ6_S 3U5G_T 3U5C_T 3O30_M 3O2Z_M 3IZB_S 2XZN_T 2XZM_T 2V7F_A.
Probab=20.13 E-value=51 Score=28.24 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHHHccCCC---C-CCCHHHhhhc
Q psy6093 164 DPASVQLSLKLLRLIDALDDD---E-HLTPLGYHLA 195 (350)
Q Consensus 164 ~~~~i~~al~~L~~lgald~~---~-~LT~lG~~ls 195 (350)
+...+..+++.|+.+|.|+.+ | .||+-|+...
T Consensus 93 sg~iiR~~LqqLE~~glv~k~~~~GR~lT~~G~~~l 128 (139)
T PF01090_consen 93 SGSIIRKILQQLEKAGLVEKDPKGGRRLTPKGQRDL 128 (139)
T ss_dssp HHHHHHHHHHHHHHTTSEEEETTTEEEE-HHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCEEecCCCCCEECHHHHHHH
Confidence 456799999999999999864 2 6999998753
Done!