Query psy6093
Match_columns 350
No_of_seqs 215 out of 1706
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 17:26:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 1.2E-58 4.1E-63 492.5 26.8 289 6-346 337-635 (773)
2 3i4u_A ATP-dependent RNA helic 100.0 1.1E-32 3.7E-37 259.3 16.5 149 158-344 10-158 (270)
3 2va8_A SSO2462, SKI2-type heli 100.0 4.1E-29 1.4E-33 262.9 15.8 196 10-223 315-534 (715)
4 2p6r_A Afuhel308 helicase; pro 100.0 2E-27 6.7E-32 249.9 21.9 273 9-337 298-603 (702)
5 2zj8_A DNA helicase, putative 99.9 1E-24 3.5E-29 229.8 19.7 201 10-226 297-522 (720)
6 3eaq_A Heat resistant RNA depe 99.8 1.7E-20 5.8E-25 169.6 7.4 139 7-175 55-211 (212)
7 3i32_A Heat resistant RNA depe 99.8 3.8E-20 1.3E-24 176.3 6.0 144 7-180 52-213 (300)
8 3rc3_A ATP-dependent RNA helic 99.7 3.5E-18 1.2E-22 178.9 9.2 122 7-133 344-476 (677)
9 2z83_A Helicase/nucleoside tri 99.5 4E-15 1.4E-19 149.1 3.2 93 7-104 214-313 (459)
10 3o8b_A HCV NS3 protease/helica 99.5 3.2E-14 1.1E-18 148.3 6.1 93 7-106 420-516 (666)
11 4f92_B U5 small nuclear ribonu 99.4 1.8E-13 6.3E-18 155.8 11.1 202 10-222 1216-1447(1724)
12 2jlq_A Serine protease subunit 99.4 1.9E-13 6.5E-18 136.6 9.8 93 7-102 212-309 (451)
13 4f92_B U5 small nuclear ribonu 99.4 7.7E-13 2.6E-17 150.7 11.7 202 12-222 383-616 (1724)
14 1fuk_A Eukaryotic initiation f 99.4 5.3E-13 1.8E-17 115.1 6.4 81 7-105 54-138 (165)
15 2hjv_A ATP-dependent RNA helic 99.4 1.1E-12 3.7E-17 113.0 7.8 81 7-105 59-143 (163)
16 1yks_A Genome polyprotein [con 99.3 3.8E-13 1.3E-17 134.1 4.8 91 7-102 201-297 (440)
17 2rb4_A ATP-dependent RNA helic 99.3 1.5E-12 5.1E-17 113.3 7.1 87 7-105 58-148 (175)
18 2whx_A Serine protease/ntpase/ 99.3 9.9E-13 3.4E-17 136.5 7.0 92 7-103 379-477 (618)
19 2ykg_A Probable ATP-dependent 99.3 1.2E-13 4E-18 144.1 -0.2 101 14-133 441-555 (696)
20 3eiq_A Eukaryotic initiation f 99.3 3.6E-13 1.2E-17 130.8 2.8 82 7-106 304-389 (414)
21 3pey_A ATP-dependent RNA helic 99.3 1.6E-12 5.4E-17 124.8 6.9 86 7-104 267-356 (395)
22 4a4z_A Antiviral helicase SKI2 99.3 6.6E-13 2.3E-17 144.6 4.7 83 10-102 402-490 (997)
23 3fht_A ATP-dependent RNA helic 99.3 3.3E-12 1.1E-16 123.7 7.8 86 7-104 290-379 (412)
24 2i4i_A ATP-dependent RNA helic 99.3 2.2E-12 7.6E-17 125.4 5.9 83 7-107 300-386 (417)
25 1hv8_A Putative ATP-dependent 99.3 2.9E-12 9.8E-17 121.8 6.5 82 7-106 262-347 (367)
26 1s2m_A Putative ATP-dependent 99.3 4.4E-12 1.5E-16 122.8 7.8 82 7-106 282-367 (400)
27 2jgn_A DBX, DDX3, ATP-dependen 99.3 2.8E-12 9.7E-17 113.1 5.1 81 7-105 70-154 (185)
28 2v6i_A RNA helicase; membrane, 99.3 4.4E-12 1.5E-16 126.0 6.5 90 7-102 195-288 (431)
29 2v1x_A ATP-dependent DNA helic 99.3 6.2E-12 2.1E-16 129.9 7.8 83 7-107 291-377 (591)
30 2p6n_A ATP-dependent RNA helic 99.3 5.3E-12 1.8E-16 112.0 6.3 80 7-104 78-161 (191)
31 2wv9_A Flavivirin protease NS2 99.2 5.9E-12 2E-16 131.9 7.2 91 7-102 434-531 (673)
32 3l9o_A ATP-dependent RNA helic 99.2 3.9E-12 1.3E-16 139.9 5.6 85 10-104 507-597 (1108)
33 2db3_A ATP-dependent RNA helic 99.2 1.1E-11 3.7E-16 122.9 8.1 80 7-104 324-407 (434)
34 2j0s_A ATP-dependent RNA helic 99.2 6.8E-12 2.3E-16 122.0 6.1 82 7-106 300-385 (410)
35 1t5i_A C_terminal domain of A 99.2 8.4E-12 2.9E-16 108.6 5.5 80 7-104 55-138 (172)
36 2yjt_D ATP-dependent RNA helic 98.8 1.2E-12 4.2E-17 113.4 0.0 82 7-106 54-139 (170)
37 1oyw_A RECQ helicase, ATP-depe 99.2 1.5E-11 5E-16 125.2 7.6 82 7-106 260-345 (523)
38 1xti_A Probable ATP-dependent 99.2 2.4E-11 8.2E-16 116.9 7.4 81 7-105 274-358 (391)
39 3i5x_A ATP-dependent RNA helic 99.2 2.5E-11 8.4E-16 123.5 7.4 81 7-105 366-450 (563)
40 2xgj_A ATP-dependent RNA helic 99.2 4.1E-11 1.4E-15 130.7 9.5 85 10-104 409-499 (1010)
41 3fmp_B ATP-dependent RNA helic 99.1 4.6E-12 1.6E-16 126.5 0.0 87 7-105 357-447 (479)
42 1fuu_A Yeast initiation factor 99.1 4.9E-12 1.7E-16 121.7 0.0 84 7-108 283-370 (394)
43 4a2p_A RIG-I, retinoic acid in 99.1 8.7E-12 3E-16 125.6 1.4 83 5-106 424-510 (556)
44 3sqw_A ATP-dependent RNA helic 99.1 6.1E-11 2.1E-15 121.6 7.4 81 7-105 315-399 (579)
45 3tbk_A RIG-I helicase domain; 99.1 7.1E-12 2.4E-16 125.8 0.1 82 5-105 423-508 (555)
46 2z0m_A 337AA long hypothetical 99.1 7E-11 2.4E-15 111.0 6.4 76 10-103 243-322 (337)
47 3fho_A ATP-dependent RNA helic 99.0 3.1E-11 1.1E-15 122.1 1.4 105 7-123 381-493 (508)
48 1wp9_A ATP-dependent RNA helic 99.0 9.7E-11 3.3E-15 114.3 4.1 81 7-105 385-476 (494)
49 1c4o_A DNA nucleotide excision 99.0 6E-10 2.1E-14 116.5 8.4 85 7-104 463-550 (664)
50 4a2q_A RIG-I, retinoic acid in 99.0 2.4E-10 8.2E-15 121.6 4.2 82 5-105 665-750 (797)
51 1gm5_A RECG; helicase, replica 99.0 1.6E-10 5.5E-15 122.8 2.7 81 5-102 611-695 (780)
52 2d7d_A Uvrabc system protein B 98.9 7.7E-10 2.6E-14 115.7 7.4 85 7-104 469-556 (661)
53 4gl2_A Interferon-induced heli 98.9 2.9E-10 9.9E-15 118.4 3.4 77 7-103 430-517 (699)
54 4a2w_A RIG-I, retinoic acid in 98.9 3.9E-10 1.3E-14 122.2 3.8 82 5-105 665-750 (936)
55 2eyq_A TRCF, transcription-rep 98.8 5.5E-09 1.9E-13 115.4 8.1 81 7-104 838-922 (1151)
56 3oiy_A Reverse gyrase helicase 98.7 1.2E-08 4.2E-13 99.5 6.7 78 7-103 276-364 (414)
57 2fwr_A DNA repair protein RAD2 98.7 5E-09 1.7E-13 104.2 3.7 78 10-105 371-455 (472)
58 2oca_A DAR protein, ATP-depend 98.7 6E-09 2.1E-13 104.6 2.4 77 9-103 373-454 (510)
59 1gku_B Reverse gyrase, TOP-RG; 98.5 6.3E-08 2.2E-12 106.1 5.1 50 8-59 299-353 (1054)
60 1tf5_A Preprotein translocase 98.5 1.3E-07 4.3E-12 100.4 6.6 82 6-105 455-546 (844)
61 3jux_A Protein translocase sub 98.3 5.4E-07 1.8E-11 94.3 5.9 81 7-105 498-588 (822)
62 1z5z_A Helicase of the SNF2/RA 98.3 5.4E-07 1.8E-11 84.1 4.8 80 7-104 137-224 (271)
63 3dmq_A RNA polymerase-associat 98.2 8.5E-07 2.9E-11 96.4 6.4 80 7-104 528-615 (968)
64 4ddu_A Reverse gyrase; topoiso 98.2 2E-07 6.9E-12 102.6 0.2 50 7-59 333-388 (1104)
65 2fsf_A Preprotein translocase 98.1 2.4E-06 8.1E-11 90.6 6.5 78 7-104 465-583 (853)
66 3h1t_A Type I site-specific re 98.1 1.8E-06 6.3E-11 88.3 4.5 66 10-94 474-545 (590)
67 1z63_A Helicase of the SNF2/RA 98.0 2.9E-06 9.9E-11 84.7 4.7 80 7-104 366-453 (500)
68 1nkt_A Preprotein translocase 97.9 8E-06 2.7E-10 87.0 6.1 78 7-104 484-617 (922)
69 1z3i_X Similar to RAD54-like; 97.8 2.8E-05 9.7E-10 80.8 7.1 80 7-104 440-528 (644)
70 3mwy_W Chromo domain-containin 97.6 4.5E-05 1.5E-09 81.1 5.9 81 7-105 596-685 (800)
71 2w00_A HSDR, R.ECOR124I; ATP-b 95.5 0.012 4.1E-07 64.3 5.5 51 26-95 645-695 (1038)
72 2ipc_A Preprotein translocase 72.9 1.8 6.2E-05 46.5 3.0 31 67-97 659-691 (997)
73 3im1_A Protein SNU246, PRE-mRN 44.3 10 0.00036 35.3 2.4 36 179-214 1-38 (328)
74 3u5c_T 40S ribosomal protein S 31.3 26 0.00089 29.0 2.5 35 161-195 94-132 (144)
75 2xgj_A ATP-dependent RNA helic 29.0 75 0.0026 34.4 6.3 53 165-218 816-870 (1010)
76 3iz6_S 40S ribosomal protein S 28.7 24 0.00081 29.3 1.8 35 161-195 96-134 (146)
77 2vl7_A XPD; helicase, unknown 25.6 26 0.00087 34.9 1.8 72 26-99 425-517 (540)
78 3l9o_A ATP-dependent RNA helic 25.4 69 0.0024 35.0 5.3 50 168-218 917-968 (1108)
79 1q02_A Sequestosome 1; helical 22.4 28 0.00095 23.7 0.9 25 166-190 8-32 (52)
80 2xzm_T RPS19E; ribosome, trans 21.8 47 0.0016 27.8 2.4 33 163-195 99-140 (155)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.2e-58 Score=492.52 Aligned_cols=289 Identities=33% Similarity=0.542 Sum_probs=269.7
Q ss_pred cceeeeccCCCCCHHHHHHhcc--------CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccc
Q psy6093 6 QIWFLQCPSSGLKHLQNKSVFE--------LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWI 77 (350)
Q Consensus 6 ~~~~~~~lHs~l~~~~q~~vf~--------~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~i 77 (350)
.++.+.++||+|++++|+++|+ +|.+|||||||+||+|||||+|++|||+|+.|.+.||+..|++.|.+.|+
T Consensus 337 ~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~ 416 (773)
T 2xau_A 337 GPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPI 416 (773)
T ss_dssp CCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEEC
T ss_pred CCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccC
Confidence 4677888999999999999976 47899999999999999999999999999999999999999999999999
Q ss_pred cHhhHHhhhccCCCCCCceEEEccccccc-ccccCCCCccccccchHHHHHHHhhccCccchhhHhhhhccccCCccccC
Q psy6093 78 SLANAKQRRGRAGRVQEGVCYHLYSRARE-QTFQDYPLPEIQRTRLDEVVRTLESKKFKMVSRRFKVMLNTAFTPYVWVP 156 (350)
Q Consensus 78 Ska~~~QR~GRaGR~~~G~c~rLyt~~~~-~~~~~~~~pEi~r~~L~~~~L~~k~~~~~~~~~~f~~~l~~~~~p~~~~l 156 (350)
|++++.||+|||||.++|.||+||++..+ +.+.+++.|||++.+|.+++|++|.+|++++ ..|
T Consensus 417 S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~-~~f--------------- 480 (773)
T 2xau_A 417 SKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDL-VHF--------------- 480 (773)
T ss_dssp CHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCG-GGC---------------
T ss_pred CHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCCh-hhc---------------
Confidence 99999999999999999999999999888 7799999999999999999999999999988 778
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHccCCCCCCCHHHhhhccCCCchhHHHHHHHhhhcCChhHHHHHhhhccccccccccc
Q psy6093 157 KQVLDPPDPASVQLSLKLLRLIDALDDDEHLTPLGYHLAKLPLDPQIGKMLLMASIFSCVDPVFTVAASLGFKDAFYCPM 236 (350)
Q Consensus 157 ~~~~~pP~~~~i~~al~~L~~lgald~~~~LT~lG~~ls~Lpldp~~ak~ll~~~~~~C~~~~l~iaa~l~~~~~~~~~~ 236 (350)
++++||+.+++..|++.|..+|+||++|+||++|+.|++||+||++||||+.|..++|.+++++|
T Consensus 481 -~~~~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i-------------- 545 (773)
T 2xau_A 481 -DFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTI-------------- 545 (773)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHH--------------
T ss_pred -cccCCCcHHHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhcccCchhHHHHH--------------
Confidence 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhcccCCccchhcccccCCCccccCCCchHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHccChh-HHHHH
Q psy6093 237 IGKMLLMASIFSCVDPVFTVAASLGFKDAFYCPMNMEKDVDKQKNILAQGAKSDYVVLINAMQGWEQALEHNYA-HDYCR 315 (350)
Q Consensus 237 ~g~~~~~~~i~s~~~~~~~~aa~ls~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~~f~~w~~~~~~~~~-~~~C~ 315 (350)
+|+|+.+++|+.|.+.+++++..|+.|.. ..|||++++|+|++|.+....+.. ..||+
T Consensus 546 --------------------~a~ls~~~~f~~~~~~~~~~~~~~~~f~~-~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~ 604 (773)
T 2xau_A 546 --------------------VAMLSVPNVFIRPTKDKKRADDAKNIFAH-PDGDHITLLNVYHAFKSDEAYEYGIHKWCR 604 (773)
T ss_dssp --------------------HHHHTSCCCBCCCTTCHHHHHHHHHTTCC-TTBHHHHHHHHHHHHTSHHHHHHCHHHHHH
T ss_pred --------------------HHhcccCCcccCChHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHHhccccchHHHHHH
Confidence 67778889999999999999999999975 679999999999999754322233 78999
Q ss_pred HccCCHHHHHHHHHHHHHHHHHHHHCCCCcC
Q psy6093 316 ENFLTNNTLLLLRDMKDQFSRTMHEMNFISS 346 (350)
Q Consensus 316 ~~~L~~~~l~~~~~lr~ql~~~l~~~~~~~~ 346 (350)
+||||+++|+++.++|+||.++|.+.|+...
T Consensus 605 ~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~ 635 (773)
T 2xau_A 605 DHYLNYRSLSAADNIRSQLERLMNRYNLELN 635 (773)
T ss_dssp HTTBCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 9999999999999999999999999988653
No 2
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=259.28 Aligned_cols=149 Identities=25% Similarity=0.495 Sum_probs=137.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHccCCCCCCCHHHhhhccCCCchhHHHHHHHhhhcCChhHHHHHhhhcccccccccccc
Q psy6093 158 QVLDPPDPASVQLSLKLLRLIDALDDDEHLTPLGYHLAKLPLDPQIGKMLLMASIFSCVDPVFTVAASLGFKDAFYCPMI 237 (350)
Q Consensus 158 ~~~~pP~~~~i~~al~~L~~lgald~~~~LT~lG~~ls~Lpldp~~ak~ll~~~~~~C~~~~l~iaa~l~~~~~~~~~~~ 237 (350)
.++|||+.+++..|++.|..+||||++|+||++|+.|++||+||++||||+.|..++|.+++++|
T Consensus 10 ~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~i--------------- 74 (270)
T 3i4u_A 10 LGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTI--------------- 74 (270)
T ss_dssp ----CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHH---------------
T ss_pred cCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHH---------------
Confidence 34999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcccCCccchhcccccCCCccccCCCchHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHccChhHHHHHHc
Q psy6093 238 GKMLLMASIFSCVDPVFTVAASLGFKDAFYCPMNMEKDVDKQKNILAQGAKSDYVVLINAMQGWEQALEHNYAHDYCREN 317 (350)
Q Consensus 238 g~~~~~~~i~s~~~~~~~~aa~ls~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~~f~~w~~~~~~~~~~~~C~~~ 317 (350)
||+|+.+++|+.|.+++++++..|++|.. ..|||++++|+|++|++ ++...+||++|
T Consensus 75 -------------------aA~Ls~~~~f~~p~~~~~~a~~~~~~f~~-~~sD~ltlLn~~~~~~~---~~~~~~wC~~~ 131 (270)
T 3i4u_A 75 -------------------VSMLSVQNVFYRPKDKQALADQKKAKFHQ-TEGDHLTLLAVYNSWKN---NKFSNPWCYEN 131 (270)
T ss_dssp -------------------HHHHTSSCCBCCCGGGHHHHHHHHHTTCB-TTBHHHHHHHHHHHHHH---TTTCHHHHHHT
T ss_pred -------------------HHHHCCCccccCCchhHHHHHHHHHHccC-CCChHHHHHHHHHHHHH---cCchhhHHHHh
Confidence 77788899999999989999999999986 68999999999999985 34568999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHCCCC
Q psy6093 318 FLTNNTLLLLRDMKDQFSRTMHEMNFI 344 (350)
Q Consensus 318 ~L~~~~l~~~~~lr~ql~~~l~~~~~~ 344 (350)
|||+++|+++.++|+||.++|++.|+.
T Consensus 132 fL~~~~l~~~~~ir~QL~~~l~~~~~~ 158 (270)
T 3i4u_A 132 FIQARSLRRAQDIRKQMLGIMDRHKLD 158 (270)
T ss_dssp TBCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999975
No 3
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.96 E-value=4.1e-29 Score=262.92 Aligned_cols=196 Identities=15% Similarity=0.139 Sum_probs=147.7
Q ss_pred eeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhh
Q psy6093 10 LQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRR 86 (350)
Q Consensus 10 ~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 86 (350)
+..+||+|++++|+++++ .|.+|||||||++|+|||+|++++|||+ ..+||++.+.. ..|+|++++.||+
T Consensus 315 v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~ 387 (715)
T 2va8_A 315 VAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMS 387 (715)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHh
Confidence 566799999999999976 8999999999999999999999999997 56788765443 6899999999999
Q ss_pred ccCCCCC---CceEEEcccccc-ccccc---CCCCccccccchHH------HHHHHhhccCc-cchhhHhhhhccccCCc
Q psy6093 87 GRAGRVQ---EGVCYHLYSRAR-EQTFQ---DYPLPEIQRTRLDE------VVRTLESKKFK-MVSRRFKVMLNTAFTPY 152 (350)
Q Consensus 87 GRaGR~~---~G~c~rLyt~~~-~~~~~---~~~~pEi~r~~L~~------~~L~~k~~~~~-~~~~~f~~~l~~~~~p~ 152 (350)
|||||.+ +|.||++|++.. +..+. -...||+.+++|.+ .+|.++.+|.. +. .+...-+..+|
T Consensus 388 GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~-~~~~~~l~~~~--- 463 (715)
T 2va8_A 388 GRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSE-KQLENFAYESL--- 463 (715)
T ss_dssp TTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEH-HHHHHHHTTSS---
T ss_pred hhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCH-HHHHHHHHhhH---
Confidence 9999998 899999998765 22211 24678999888765 67777777732 22 22211133232
Q ss_pred cccCccCCC-CCCHHHHHHHHHHHHHHHccCCCC---CCCHHHhhhccCCCchhHHHHHHHhhhc---CChhHHHHHh
Q psy6093 153 VWVPKQVLD-PPDPASVQLSLKLLRLIDALDDDE---HLTPLGYHLAKLPLDPQIGKMLLMASIF---SCVDPVFTVA 223 (350)
Q Consensus 153 ~~~l~~~~~-pP~~~~i~~al~~L~~lgald~~~---~LT~lG~~ls~Lpldp~~ak~ll~~~~~---~C~~~~l~ia 223 (350)
+. +|+...+..|++.|.++|+|+.++ .+|++|+.++++|++|..+++++.+... .|..+++.+.
T Consensus 464 -------~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 534 (715)
T 2va8_A 464 -------LAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLL 534 (715)
T ss_dssp -------SCHHHHHHHHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred -------HHhhcchHHHHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHh
Confidence 22 445567999999999999998764 8999999999999999999999999988 7888888873
No 4
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.95 E-value=2e-27 Score=249.88 Aligned_cols=273 Identities=15% Similarity=0.151 Sum_probs=194.4
Q ss_pred eeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhh
Q psy6093 9 FLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQR 85 (350)
Q Consensus 9 ~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR 85 (350)
.+..+||+|++++|+++++ +|.+|||||||++|+|||+|++++|||+ ..+|| +. ..|+|.+++.||
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr 366 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQM 366 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHH
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHHHH
Confidence 3556799999999999976 8999999999999999999999999987 56787 21 678999999999
Q ss_pred hccCCCCC---CceEEEcccccccccccC---CCCccccccchHH------HHHHHhhccCc-cchhhHhhhhccccCCc
Q psy6093 86 RGRAGRVQ---EGVCYHLYSRAREQTFQD---YPLPEIQRTRLDE------VVRTLESKKFK-MVSRRFKVMLNTAFTPY 152 (350)
Q Consensus 86 ~GRaGR~~---~G~c~rLyt~~~~~~~~~---~~~pEi~r~~L~~------~~L~~k~~~~~-~~~~~f~~~l~~~~~p~ 152 (350)
+|||||.+ +|.||+++++..++.+.+ ...||+.+++|.+ .++.....|.. +. .+...-+..+|...
T Consensus 367 ~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~-~~~~~~l~~t~~~~ 445 (702)
T 2p6r_A 367 AGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTL-EELEDFFADTFFFK 445 (702)
T ss_dssp HTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSH-HHHHHHHHTSTTHH
T ss_pred hhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCH-HHHHHHHHhhhHHH
Confidence 99999998 899999999876543222 4678999888765 56666666632 22 22212234444221
Q ss_pred cccCccCCCCCCHHHHHHHHHHHHHHHccCCC--CCCCHHHhhhccCCCchhHHHHHHHhhhc--CChhHHHHHhhhccc
Q psy6093 153 VWVPKQVLDPPDPASVQLSLKLLRLIDALDDD--EHLTPLGYHLAKLPLDPQIGKMLLMASIF--SCVDPVFTVAASLGF 228 (350)
Q Consensus 153 ~~~l~~~~~pP~~~~i~~al~~L~~lgald~~--~~LT~lG~~ls~Lpldp~~ak~ll~~~~~--~C~~~~l~iaa~l~~ 228 (350)
-.++|..+.+..|++.|.+.|+|+.+ +.+|++|+.++.+|++|..+++++.+... .|..+++.+.++
T Consensus 446 ------~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~--- 516 (702)
T 2p6r_A 446 ------QNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICR--- 516 (702)
T ss_dssp ------HHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHH---
T ss_pred ------hhhHHHHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhC---
Confidence 12378889999999999999999977 78999999999999999999999999988 898888887221
Q ss_pred cccccccccchhhhhhhhcccCCccchhcccccCCCccccCCCchHHHHHHHH----HhccCC--CC-------hHHHHH
Q psy6093 229 KDAFYCPMIGKMLLMASIFSCVDPVFTVAASLGFKDAFYCPMNMEKDVDKQKN----ILAQGA--KS-------DYVVLI 295 (350)
Q Consensus 229 ~~~~~~~~~g~~~~~~~i~s~~~~~~~~aa~ls~~~~f~~p~~~~~~~~~~r~----~f~~~~--~s-------Dhltll 295 (350)
...+.+.++.+.+ ++....-. .+..-+ .. .|+-..
T Consensus 517 ------------------------------~~e~~~i~~r~~e--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 564 (702)
T 2p6r_A 517 ------------------------------TPDMERLTVRKTD--SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTA 564 (702)
T ss_dssp ------------------------------STTSCCCCCCTTT--HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHH
T ss_pred ------------------------------CcccccCCCCCch--HHHHHHHHhccccccCCcchhhhhhhhhhhhHHHH
Confidence 1223445555544 22222211 110001 11 355555
Q ss_pred HHHHHHHHHHccChhHHHHHHccCCHHHHHHHHHHHHHHHHH
Q psy6093 296 NAMQGWEQALEHNYAHDYCRENFLTNNTLLLLRDMKDQFSRT 337 (350)
Q Consensus 296 ~~f~~w~~~~~~~~~~~~C~~~~L~~~~l~~~~~lr~ql~~~ 337 (350)
-+.+.|. +.......|.++++...-++.+.+--..|.+.
T Consensus 565 ~lL~~~~---~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a 603 (702)
T 2p6r_A 565 LCLKDWI---EEKDEDEICAKYGIAPGDLRRIVETAEWLSNA 603 (702)
T ss_dssp HHHHHHH---TTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---cCCChHHHHHHhCCcHHhHHHHHHHHHHHHHH
Confidence 5666776 33345678888888776666555444444443
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.92 E-value=1e-24 Score=229.79 Aligned_cols=201 Identities=19% Similarity=0.137 Sum_probs=151.1
Q ss_pred eeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhh
Q psy6093 10 LQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRR 86 (350)
Q Consensus 10 ~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 86 (350)
+..+||+|++++|+++++ .|.++||||||++|+|||+|++++||+.+ .+|| ..| ..|+|.+++.||+
T Consensus 297 v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~ 366 (720)
T 2zj8_A 297 VAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQML 366 (720)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHHHH
T ss_pred eeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCC----eeec-CCC-----CccCCHHHHHHHH
Confidence 566799999999999976 89999999999999999999999999865 4566 222 3689999999999
Q ss_pred ccCCCCC---CceEEEcccccccc----cccCCCCcccccc-----chHHHHHHHhhccCc-cchhhHhhhhccccCCcc
Q psy6093 87 GRAGRVQ---EGVCYHLYSRAREQ----TFQDYPLPEIQRT-----RLDEVVRTLESKKFK-MVSRRFKVMLNTAFTPYV 153 (350)
Q Consensus 87 GRaGR~~---~G~c~rLyt~~~~~----~~~~~~~pEi~r~-----~L~~~~L~~k~~~~~-~~~~~f~~~l~~~~~p~~ 153 (350)
|||||.+ +|.||.++++...+ .+.....+++... .|...++.....+.. +. .+...-+..+|...
T Consensus 367 GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~-~d~~~~l~~~~~~~- 444 (720)
T 2zj8_A 367 GRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTV-EEILKFISNTFYAY- 444 (720)
T ss_dssp TTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSH-HHHHHHHHTSHHHH-
T ss_pred hhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCH-HHHHHHHHhChHHH-
Confidence 9999987 89999999986522 2333344444333 345555666555532 11 22211244444211
Q ss_pred ccCccCC-CCCCHHHHHHHHHHHHHHHccC-CCC---CCCHHHhhhccCCCchhHHHHHHHhhhc----CChhHHHHHhh
Q psy6093 154 WVPKQVL-DPPDPASVQLSLKLLRLIDALD-DDE---HLTPLGYHLAKLPLDPQIGKMLLMASIF----SCVDPVFTVAA 224 (350)
Q Consensus 154 ~~l~~~~-~pP~~~~i~~al~~L~~lgald-~~~---~LT~lG~~ls~Lpldp~~ak~ll~~~~~----~C~~~~l~iaa 224 (350)
+.. ++|..+.+..+++.|...|+|+ +++ .+|++|+.++.+|++|..+++++.+... .|..+++.|.|
T Consensus 445 ----~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 520 (720)
T 2zj8_A 445 ----QRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLIS 520 (720)
T ss_dssp ----HCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred ----hccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhc
Confidence 111 3344578999999999999998 655 8999999999999999999999999887 89999999855
Q ss_pred hc
Q psy6093 225 SL 226 (350)
Q Consensus 225 ~l 226 (350)
+.
T Consensus 521 ~~ 522 (720)
T 2zj8_A 521 LT 522 (720)
T ss_dssp TS
T ss_pred cC
Confidence 44
No 6
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.81 E-value=1.7e-20 Score=169.55 Aligned_cols=139 Identities=19% Similarity=0.193 Sum_probs=115.9
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+|++++|+++++ .|..+|+||||++++|++||+|++||+.+. |.|.+++.
T Consensus 55 ~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~------------------p~~~~~~~ 116 (212)
T 3eaq_A 55 GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRL------------------PDRAEAYQ 116 (212)
T ss_dssp TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSC------------------CSSHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCC------------------CcCHHHHH
Confidence 667888999999999999976 899999999999999999999999998544 35789999
Q ss_pred hhhccCCCCC-CceEEEcccccc--------------cccccCCCCccccccchHHHHHHHhhccCccchhhHhhhhccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR--------------EQTFQDYPLPEIQRTRLDEVVRTLESKKFKMVSRRFKVMLNTA 148 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~--------------~~~~~~~~~pEi~r~~L~~~~L~~k~~~~~~~~~~f~~~l~~~ 148 (350)
||+|||||.+ +|.||.+|+..+ +..++..+.|||.+..+..+++.++.+..++. ..|...
T Consensus 117 qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~-~~~~~~---- 191 (212)
T 3eaq_A 117 HRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDY-RLYQDF---- 191 (212)
T ss_dssp HHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHH-TTTHHH----
T ss_pred HHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHH----
Confidence 9999999996 899999999865 55567778899999999999999998876554 444211
Q ss_pred cCCccccCccCCCCCCHHHHHHHHHHH
Q psy6093 149 FTPYVWVPKQVLDPPDPASVQLSLKLL 175 (350)
Q Consensus 149 ~~p~~~~l~~~~~pP~~~~i~~al~~L 175 (350)
+.+++++|+++.+..|+..|
T Consensus 192 -------~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 192 -------AGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp -------HHHHHHHTCHHHHHHHHHHH
T ss_pred -------HHHHHhcCCHHHHHHHHHhh
Confidence 33567888999999998765
No 7
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.79 E-value=3.8e-20 Score=176.33 Aligned_cols=144 Identities=17% Similarity=0.159 Sum_probs=117.1
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+|++++|+++++ .|.++|+||||+|++|++||+|++||+.+. +.|.+++.
T Consensus 52 g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~------------------p~s~~~y~ 113 (300)
T 3i32_A 52 GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRM------------------PDRAEAYQ 113 (300)
T ss_dssp TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSC------------------CSSTTHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCC------------------CCCHHHHH
Confidence 677888999999999999976 889999999999999999999999998544 34778999
Q ss_pred hhhccCCCCC-CceEEEcccccc--------------cccccCCCCccccccchHHHHHHHhhccCccchhhHhhhhccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR--------------EQTFQDYPLPEIQRTRLDEVVRTLESKKFKMVSRRFKVMLNTA 148 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~--------------~~~~~~~~~pEi~r~~L~~~~L~~k~~~~~~~~~~f~~~l~~~ 148 (350)
||+|||||.+ +|.||.+|+..+ +..++..+.|||.+..+..+++.++.++.++. ..|...
T Consensus 114 Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~-~~f~~~---- 188 (300)
T 3i32_A 114 HRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDY-RLYQDF---- 188 (300)
T ss_dssp HHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHH-HTTHHH----
T ss_pred HHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHHHHHHHHHHHHHHHHHhcchhhH-HHHHHH----
Confidence 9999999996 899999999865 55677788899999999999999998765555 445222
Q ss_pred cCCccccCccCCCCCCHHHHHHHHHHHHHHHc
Q psy6093 149 FTPYVWVPKQVLDPPDPASVQLSLKLLRLIDA 180 (350)
Q Consensus 149 ~~p~~~~l~~~~~pP~~~~i~~al~~L~~lga 180 (350)
+.+++++|+.+.+..|+..|.....
T Consensus 189 -------~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 189 -------AGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp -------HHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred -------HHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 2355677999999999999965543
No 8
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.73 E-value=3.5e-18 Score=178.94 Aligned_cols=122 Identities=20% Similarity=0.155 Sum_probs=98.7
Q ss_pred ceeeeccCCCCCHHHHHHh---ccC--CCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhh
Q psy6093 7 IWFLQCPSSGLKHLQNKSV---FEL--GVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLAN 81 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~v---f~~--g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~ 81 (350)
++.+..+||+|++++|+++ |++ |.++|+||||++|+|||| +|++|||+|..|. .||+..+. ...|+|.++
T Consensus 344 g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~---~~~p~s~~~ 418 (677)
T 3rc3_A 344 GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER---ELEPITTSQ 418 (677)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHH
T ss_pred CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc---ccccCCHHH
Confidence 5677888999999976655 556 889999999999999999 9999999999998 88887544 367999999
Q ss_pred HHhhhccCCCCC----CceEEEccccc--ccccccCCCCccccccchHHHHHHHhhcc
Q psy6093 82 AKQRRGRAGRVQ----EGVCYHLYSRA--REQTFQDYPLPEIQRTRLDEVVRTLESKK 133 (350)
Q Consensus 82 ~~QR~GRaGR~~----~G~c~rLyt~~--~~~~~~~~~~pEi~r~~L~~~~L~~k~~~ 133 (350)
+.||+|||||.+ +|.||++++++ .+..+.....|+|.+.++....++++.++
T Consensus 419 ~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~~l~~~~ 476 (677)
T 3rc3_A 419 ALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFA 476 (677)
T ss_dssp HHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHHSCCCCCCCEEECCCHHHHHHHH
T ss_pred HHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHhcCcchhhhccCCChHHHHHHHh
Confidence 999999999998 58999999886 56778889999999999988888887765
No 9
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.50 E-value=4e-15 Score=149.09 Aligned_cols=93 Identities=25% Similarity=0.276 Sum_probs=74.6
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecC--CCccccccccccHhh
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVK--DNIATLKPEWISLAN 81 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~--~~~~~l~~~~iSka~ 81 (350)
++.+..+||. +|+++++ .|..+|+||||++|+|++||+ ++|||+|+.+.+.++.. ..+..+...|.|+++
T Consensus 214 g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~ 288 (459)
T 2z83_A 214 GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSAS 288 (459)
T ss_dssp TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHH
T ss_pred CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHH
Confidence 5667788984 5666655 899999999999999999999 99999999998887632 223333559999999
Q ss_pred HHhhhccCCCCC--CceEEEccccc
Q psy6093 82 AKQRRGRAGRVQ--EGVCYHLYSRA 104 (350)
Q Consensus 82 ~~QR~GRaGR~~--~G~c~rLyt~~ 104 (350)
+.||+|||||.+ +|.||.++++.
T Consensus 289 ~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 289 AAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHhccccCCCCCCCCeEEEEEccc
Confidence 999999999986 89999999875
No 10
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.46 E-value=3.2e-14 Score=148.27 Aligned_cols=93 Identities=25% Similarity=0.235 Sum_probs=79.3
Q ss_pred ceeeeccCCCCCHHHHHHhccCCCceEEEecCccccCCCCCCccEEEeCCCcceee----eecCCCccccccccccHhhH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSN----FDVKDNIATLKPEWISLANA 82 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~----yd~~~~~~~l~~~~iSka~~ 82 (350)
++.+..+||+|++++ |+.+.++|+||||++|.||+|| |++|||+|+.+..+ |||..++.. ...|+|.+++
T Consensus 420 g~~v~~lHG~l~q~e----r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~-~~~P~s~~sy 493 (666)
T 3o8b_A 420 GINAVAYYRGLDVSV----IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET-TTVPQDAVSR 493 (666)
T ss_dssp TCCEEEECTTSCGGG----SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE-EEEECBHHHH
T ss_pred CCcEEEecCCCCHHH----HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccc-ccCcCCHHHH
Confidence 567888899999764 5556679999999999999997 99999999999776 455566655 3689999999
Q ss_pred HhhhccCCCCCCceEEEccccccc
Q psy6093 83 KQRRGRAGRVQEGVCYHLYSRARE 106 (350)
Q Consensus 83 ~QR~GRaGR~~~G~c~rLyt~~~~ 106 (350)
.||+||+||.++|. |.||++.++
T Consensus 494 iQRiGRtGRg~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 494 SQRRGRTGRGRRGI-YRFVTPGER 516 (666)
T ss_dssp HHHHTTBCSSSCEE-EEESCCCCB
T ss_pred HHHhccCCCCCCCE-EEEEecchh
Confidence 99999999987999 999998654
No 11
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.44 E-value=1.8e-13 Score=155.76 Aligned_cols=202 Identities=14% Similarity=0.099 Sum_probs=134.5
Q ss_pred eeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhh
Q psy6093 10 LQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRR 86 (350)
Q Consensus 10 ~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 86 (350)
+..+||||++++|+.|.+ .|..+|++||++++.||++|++++||.. ...||...+ ...+.|..++.||+
T Consensus 1216 Ia~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~----~~~~dg~~~----~~~~~s~~~~~Qm~ 1287 (1724)
T 4f92_B 1216 VGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMD----TQYYNGKIH----AYVDYPIYDVLQMV 1287 (1724)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEEC----SEEEETTTT----EEEECCHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEec----CccccCccc----ccCCCCHHHHHHhh
Confidence 444699999999999854 8999999999999999999999999964 345776543 33578999999999
Q ss_pred ccCCCCC---CceEEEcccccc---cccccCCCCccccccc----hHHHHHHHhhccC-ccchhhHhhhhccccC-----
Q psy6093 87 GRAGRVQ---EGVCYHLYSRAR---EQTFQDYPLPEIQRTR----LDEVVRTLESKKF-KMVSRRFKVMLNTAFT----- 150 (350)
Q Consensus 87 GRaGR~~---~G~c~rLyt~~~---~~~~~~~~~pEi~r~~----L~~~~L~~k~~~~-~~~~~~f~~~l~~~~~----- 150 (350)
|||||.+ .|.|+.+..+.. |..+-. .|+...+. +.+.++.....|. .+. .+...-+..||.
T Consensus 1288 GRAGR~g~d~~G~avll~~~~~~~~~~~ll~--~~~pveS~L~~~l~~~l~~eI~~~~i~~~-~d~~~~l~~Tfl~~r~~ 1364 (1724)
T 4f92_B 1288 GHANRPLQDDEGRCVIMCQGSKKDFFKKFLY--EPLPVESHLDHCMHDHFNAEIVTKTIENK-QDAVDYLTWTFLYRRMT 1364 (1724)
T ss_dssp TTBCCTTTCSCEEEEEEEEGGGHHHHHHHTT--SCBCCCCCGGGSCHHHHHHHHHTTSCCBH-HHHHHHHTTSSHHHHHH
T ss_pred ccccCCCCCCceEEEEEecchHHHHHHHHhC--CCCceeeecccchHHHHHHHHHhcccCCH-HHHHHHHHhhHHHHHHh
Confidence 9999987 699999877643 333322 22323333 3344443333332 222 221111343431
Q ss_pred ------CccccCccCCCCCCHHHHHHHHHHHHHHHccC--CCC--CCCHHHhhhccCCCchhHHHHHHHhhhcCCh-hHH
Q psy6093 151 ------PYVWVPKQVLDPPDPASVQLSLKLLRLIDALD--DDE--HLTPLGYHLAKLPLDPQIGKMLLMASIFSCV-DPV 219 (350)
Q Consensus 151 ------p~~~~l~~~~~pP~~~~i~~al~~L~~lgald--~~~--~LT~lG~~ls~Lpldp~~ak~ll~~~~~~C~-~~~ 219 (350)
..+..-...++..-.+.++.+++.|.+.|+|+ +++ ..|++|+.++.++++|..++++..+..-++. ..+
T Consensus 1365 ~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~ 1444 (1724)
T 4f92_B 1365 QNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGL 1444 (1724)
T ss_dssp HSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHH
T ss_pred cCcccccccccchhhHHHHHHHHHHHHHHHHHHCCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHH
Confidence 11111111111222345788999999999995 333 5799999999999999999999988765543 334
Q ss_pred HHH
Q psy6093 220 FTV 222 (350)
Q Consensus 220 l~i 222 (350)
+.+
T Consensus 1445 L~i 1447 (1724)
T 4f92_B 1445 IEI 1447 (1724)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 12
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.44 E-value=1.9e-13 Score=136.56 Aligned_cols=93 Identities=22% Similarity=0.103 Sum_probs=77.4
Q ss_pred ceeeeccCCCCCHHHHHHhccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCcccccc---ccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKP---EWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~---~~iSka~~~ 83 (350)
++.+..+||.+.. +-.+-|+.|..+|+|||+++|.|++||+ ++|||+|+.+.++|| ..+...+.. .|.|.+++.
T Consensus 212 g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~ 288 (451)
T 2jlq_A 212 GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAA 288 (451)
T ss_dssp TCCEEEECTTTHH-HHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHH
T ss_pred CCeEEECCHHHHH-HHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHHHHH
Confidence 5567788997642 1112244899999999999999999999 999999999999998 556666665 999999999
Q ss_pred hhhccCCCCC--CceEEEccc
Q psy6093 84 QRRGRAGRVQ--EGVCYHLYS 102 (350)
Q Consensus 84 QR~GRaGR~~--~G~c~rLyt 102 (350)
||+|||||.+ +|.||.++.
T Consensus 289 Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 289 QRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp HHHTTSSCCTTCCCEEEEECS
T ss_pred HhccccCCCCCCCccEEEEeC
Confidence 9999999998 789988765
No 13
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.39 E-value=7.7e-13 Score=150.69 Aligned_cols=202 Identities=14% Similarity=0.125 Sum_probs=131.9
Q ss_pred ccCCCCCHHHHHHh---ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhcc
Q psy6093 12 CPSSGLKHLQNKSV---FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGR 88 (350)
Q Consensus 12 ~lHs~l~~~~q~~v---f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GR 88 (350)
.+||||++++|..| |+.|..||++||++++.||++|.+++||.. ..+||+..|. ..++|.+++.||+||
T Consensus 383 ~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~~----~~~ls~~~~~Qm~GR 454 (1724)
T 4f92_B 383 IHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKGR----WTELGALDILQMLGR 454 (1724)
T ss_dssp EECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTTE----EEECCHHHHHHHHTT
T ss_pred EEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeC----CEEecCcCCC----cccCCHHHHHHhhhh
Confidence 45999999999988 459999999999999999999999999843 4678887652 357899999999999
Q ss_pred CCCCC---CceEEEcccccc---cccccCCCCc-cc-cccchHHHHHHHhhcc-CccchhhHhhhhcccc----------
Q psy6093 89 AGRVQ---EGVCYHLYSRAR---EQTFQDYPLP-EI-QRTRLDEVVRTLESKK-FKMVSRRFKVMLNTAF---------- 149 (350)
Q Consensus 89 aGR~~---~G~c~rLyt~~~---~~~~~~~~~p-Ei-~r~~L~~~~L~~k~~~-~~~~~~~f~~~l~~~~---------- 149 (350)
|||.+ .|.++-+.++.+ |..+-..+.| |- ....+.+.++.-..+| +.+. .+-..-++.||
T Consensus 455 AGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~-~~a~~~l~~T~~~~r~~~~p~ 533 (1724)
T 4f92_B 455 AGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNA-KDAVNWLGYAYLYIRMLRSPT 533 (1724)
T ss_dssp BSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBH-HHHHHHHHHSHHHHHHHHCTT
T ss_pred ccCCCCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCH-HHHHHHHhccHHHHHhhhChh
Confidence 99986 699998877643 3333222222 11 1123334443333333 2222 11111122222
Q ss_pred -CCccc--c-CccCCCCCCHHHHHHHHHHHHHHHccCC---CC--CCCHHHhhhccCCCchhHHHHHHHhhhcCChh-HH
Q psy6093 150 -TPYVW--V-PKQVLDPPDPASVQLSLKLLRLIDALDD---DE--HLTPLGYHLAKLPLDPQIGKMLLMASIFSCVD-PV 219 (350)
Q Consensus 150 -~p~~~--~-l~~~~~pP~~~~i~~al~~L~~lgald~---~~--~LT~lG~~ls~Lpldp~~ak~ll~~~~~~C~~-~~ 219 (350)
+-.+. . -.+.++..-.+.+..++..|.+.|+|.. ++ ..|++|+.+++++++|...+.+.....-.+.+ ++
T Consensus 534 ~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~l 613 (1724)
T 4f92_B 534 LYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIEL 613 (1724)
T ss_dssp TTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHH
T ss_pred hhccCccccccchHHHHHHHHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHH
Confidence 10000 0 0001111123457889999999999942 22 68999999999999999999998876655443 34
Q ss_pred HHH
Q psy6093 220 FTV 222 (350)
Q Consensus 220 l~i 222 (350)
+.+
T Consensus 614 l~~ 616 (1724)
T 4f92_B 614 FRV 616 (1724)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 14
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.36 E-value=5.3e-13 Score=115.09 Aligned_cols=81 Identities=20% Similarity=0.385 Sum_probs=67.4
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||++++++|+++++ .|..+|++||++++.|+++|++.+||+. |+ |.|.+++.
T Consensus 54 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~--------~~----------p~~~~~~~ 115 (165)
T 1fuk_A 54 KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINY--------DL----------PANKENYI 115 (165)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEES--------SC----------CSSGGGGG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEe--------CC----------CCCHHHHH
Confidence 566788899999999998865 8889999999999999999999999983 32 35778899
Q ss_pred hhhccCCCCC-CceEEEcccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
||.||+||.+ +|.||.++++.+
T Consensus 116 qr~GR~gR~g~~g~~~~~~~~~~ 138 (165)
T 1fuk_A 116 HRIGRGGRFGRKGVAINFVTNED 138 (165)
T ss_dssp GSSCSCC-----CEEEEEEETTT
T ss_pred HHhcccccCCCCceEEEEEcchH
Confidence 9999999985 899999998754
No 15
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.36 E-value=1.1e-12 Score=113.01 Aligned_cols=81 Identities=21% Similarity=0.338 Sum_probs=71.1
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||++++++|.++++ .|..+|++||++++.|+++|++.+||+ ||+ |.|..++.
T Consensus 59 ~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~--------~~~----------p~~~~~~~ 120 (163)
T 2hjv_A 59 GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVIN--------YDL----------PLEKESYV 120 (163)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE--------SSC----------CSSHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEE--------eCC----------CCCHHHHH
Confidence 567788899999999998865 888999999999999999999999998 332 46788999
Q ss_pred hhhccCCCCC-CceEEEcccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
||.||+||.+ +|.|+.++++.+
T Consensus 121 qr~GR~~R~g~~g~~~~~~~~~~ 143 (163)
T 2hjv_A 121 HRTGRTGRAGNKGKAISFVTAFE 143 (163)
T ss_dssp HHTTTSSCTTCCEEEEEEECGGG
T ss_pred HhccccCcCCCCceEEEEecHHH
Confidence 9999999986 899999988754
No 16
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.34 E-value=3.8e-13 Score=134.06 Aligned_cols=91 Identities=25% Similarity=0.283 Sum_probs=74.3
Q ss_pred ceeeeccCCCCCHHHHHHhc---cCCCceEEEecCccccCCCCCCccEEEeCCCcceeeee-cCCCccccccccccHhhH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVF---ELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFD-VKDNIATLKPEWISLANA 82 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf---~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd-~~~~~~~l~~~~iSka~~ 82 (350)
++.+..+||. +|++++ +.|..+|+|||+++|.||+|| +++|||+|+.+.++|+ ...++......|.|.+++
T Consensus 201 ~~~v~~lhg~----~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~ 275 (440)
T 1yks_A 201 GKSVVVLNRK----TFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSA 275 (440)
T ss_dssp TCCEEECCSS----SCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHH
T ss_pred CCCEEEecch----hHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHH
Confidence 5677888993 455554 489999999999999999999 9999999999998873 444566677789999999
Q ss_pred HhhhccCCCC--CCceEEEccc
Q psy6093 83 KQRRGRAGRV--QEGVCYHLYS 102 (350)
Q Consensus 83 ~QR~GRaGR~--~~G~c~rLyt 102 (350)
.||+||+||. .+|.||.+|+
T Consensus 276 ~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 276 AQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp HHHHTTSSCCTTCCCEEEEECS
T ss_pred HHhccccCCCCCCCceEEEEec
Confidence 9999999997 3899999985
No 17
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=1.5e-12 Score=113.32 Aligned_cols=87 Identities=21% Similarity=0.284 Sum_probs=68.6
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||++++++|+++++ .|..+|+|||++++.|+++|++.+||+.+..... ....|..++.
T Consensus 58 ~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~------------~~~~~~~~~~ 125 (175)
T 2rb4_A 58 GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQ------------GEEPDYETYL 125 (175)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--------------CCSCCHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCc------------cccCCHHHHH
Confidence 567788899999999998865 8899999999999999999999999984332110 1227889999
Q ss_pred hhhccCCCCC-CceEEEcccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
||.||+||.+ +|.||.+++...
T Consensus 126 qr~GR~gR~g~~g~~~~~~~~~~ 148 (175)
T 2rb4_A 126 HRIGRTGRFGKKGLAFNMIEVDE 148 (175)
T ss_dssp HHHCBC----CCEEEEEEECGGG
T ss_pred HHhcccccCCCCceEEEEEccch
Confidence 9999999985 899999998754
No 18
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.33 E-value=9.9e-13 Score=136.55 Aligned_cols=92 Identities=23% Similarity=0.186 Sum_probs=78.9
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeee--ecCCCccccccccccHhh
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNF--DVKDNIATLKPEWISLAN 81 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~y--d~~~~~~~l~~~~iSka~ 81 (350)
++.+..+||. +|+++++ .|..+|+|||+++|+|++|| |++|||+|+.+.+++ +...++......|+|.++
T Consensus 379 g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~ 453 (618)
T 2whx_A 379 GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPAS 453 (618)
T ss_dssp TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHH
T ss_pred CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHH
Confidence 5667788984 5666765 89999999999999999997 999999999888776 444456677888999999
Q ss_pred HHhhhccCCCCC--CceEEEcccc
Q psy6093 82 AKQRRGRAGRVQ--EGVCYHLYSR 103 (350)
Q Consensus 82 ~~QR~GRaGR~~--~G~c~rLyt~ 103 (350)
+.||+|||||.+ +|.||.++++
T Consensus 454 yiQR~GRaGR~g~~~G~ai~l~~~ 477 (618)
T 2whx_A 454 AAQRRGRIGRNPAQEDDQYVFSGD 477 (618)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSC
T ss_pred HHHhccccCCCCCCCCeEEEEccC
Confidence 999999999995 8999999974
No 19
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.32 E-value=1.2e-13 Score=144.11 Aligned_cols=101 Identities=21% Similarity=0.331 Sum_probs=58.7
Q ss_pred CCCCCHHHHHHhcc---C-CCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccC
Q psy6093 14 SSGLKHLQNKSVFE---L-GVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRA 89 (350)
Q Consensus 14 Hs~l~~~~q~~vf~---~-g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRa 89 (350)
||+|++++|+++++ . |..+|+|||+++|.||+||++++||+ ||+. .|..++.||+||
T Consensus 441 h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~--------~d~p----------~s~~~~~Qr~GR- 501 (696)
T 2ykg_A 441 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL--------YEYV----------GNVIKMIQTRGR- 501 (696)
T ss_dssp --------------------CCSCSEEEESSCCC---CCCSEEEE--------ESCC------------CCCC-------
T ss_pred ccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEE--------eCCC----------CCHHHHHHhhcc-
Confidence 67999999999976 6 89999999999999999999999998 6553 345567899999
Q ss_pred CCCCCceEEEccccccc----------ccccCCCCccccccchHHHHHHHhhcc
Q psy6093 90 GRVQEGVCYHLYSRARE----------QTFQDYPLPEIQRTRLDEVVRTLESKK 133 (350)
Q Consensus 90 GR~~~G~c~rLyt~~~~----------~~~~~~~~pEi~r~~L~~~~L~~k~~~ 133 (350)
||.++|.||.|+++.+. +.+.+...||+.+.+.+.++..++.+.
T Consensus 502 GR~~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~ 555 (696)
T 2ykg_A 502 GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQ 555 (696)
T ss_dssp ---CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CcCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHH
Confidence 99999999999998654 445566788898988888888776553
No 20
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.32 E-value=3.6e-13 Score=130.76 Aligned_cols=82 Identities=15% Similarity=0.327 Sum_probs=58.8
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||++++++|+++++ .|..+|+|||+++|.|+++|++++||+.+. +.|..++.
T Consensus 304 ~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~ 365 (414)
T 3eiq_A 304 DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL------------------PTNRENYI 365 (414)
T ss_dssp TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSC------------------CSSTHHHH
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCC------------------CCCHHHhh
Confidence 566778899999999999965 889999999999999999999999998332 45788999
Q ss_pred hhhccCCCCC-CceEEEccccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRARE 106 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~~ 106 (350)
||+|||||.+ +|.||.+|++.+.
T Consensus 366 Qr~GR~gR~g~~g~~~~~~~~~~~ 389 (414)
T 3eiq_A 366 HRIGRGGRFGRKGVAINMVTEEDK 389 (414)
T ss_dssp HHSCCC-------CEEEEECSTHH
T ss_pred hhcCcccCCCCCceEEEEEcHHHH
Confidence 9999999985 8999999998653
No 21
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.31 E-value=1.6e-12 Score=124.84 Aligned_cols=86 Identities=21% Similarity=0.274 Sum_probs=73.5
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+++.++|+++++ .|..+|+|||++++.|+++|++++||+.+..+ +...+.|.+++.
T Consensus 267 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~------------~~~~~~s~~~~~ 334 (395)
T 3pey_A 267 GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPT------------LANGQADPATYI 334 (395)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCB------------CTTSSBCHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCC------------CCcCCCCHHHhh
Confidence 456777899999999999965 88999999999999999999999999844322 334568999999
Q ss_pred hhhccCCCCC-CceEEEccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
||+|||||.+ +|.|+.++++.
T Consensus 335 Qr~GR~gR~g~~g~~~~~~~~~ 356 (395)
T 3pey_A 335 HRIGRTGRFGRKGVAISFVHDK 356 (395)
T ss_dssp HHHTTSSCTTCCEEEEEEECSH
T ss_pred HhccccccCCCCceEEEEEech
Confidence 9999999986 69999998864
No 22
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.31 E-value=6.6e-13 Score=144.63 Aligned_cols=83 Identities=19% Similarity=0.193 Sum_probs=70.3
Q ss_pred eeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhh
Q psy6093 10 LQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRR 86 (350)
Q Consensus 10 ~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 86 (350)
+..+||+|++.+|..+++ .|..+|+|||++++.||++|+ ++||..+..+ ||.. ...|+|.+++.||+
T Consensus 402 i~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k---~dg~------~~~~~s~~~y~Qr~ 471 (997)
T 4a4z_A 402 IAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRK---HDGN------GLRELTPGEFTQMA 471 (997)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEE---EETT------EEEECCHHHHHHHH
T ss_pred eeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEecccc---ccCc------cCCCCCHHHHhHHh
Confidence 456799999999999966 899999999999999999999 6666556554 6544 23589999999999
Q ss_pred ccCCCCC---CceEEEccc
Q psy6093 87 GRAGRVQ---EGVCYHLYS 102 (350)
Q Consensus 87 GRaGR~~---~G~c~rLyt 102 (350)
|||||.+ +|.||.++.
T Consensus 472 GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 472 GRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp GGGCCTTTCSSEEEEEECC
T ss_pred cccccCCCCcceEEEEecC
Confidence 9999976 899999985
No 23
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.29 E-value=3.3e-12 Score=123.67 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=72.9
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+++.++|+++++ .|..+|+|||++++.|+++|++++||+.+...... .+.|.+++.
T Consensus 290 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~------------~~~s~~~~~ 357 (412)
T 3fht_A 290 GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD------------GNPDNETYL 357 (412)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSS------------SSBCHHHHH
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCC------------CCcchheee
Confidence 456777899999999999965 88999999999999999999999999855533322 246889999
Q ss_pred hhhccCCCCC-CceEEEccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
||+|||||.+ +|.||.+++..
T Consensus 358 Qr~GR~gR~g~~g~~~~~~~~~ 379 (412)
T 3fht_A 358 HRIGRTGRFGKRGLAVNMVDSK 379 (412)
T ss_dssp HHHTTSSCTTCCEEEEEEECSH
T ss_pred cccCcccCCCCCceEEEEEcCh
Confidence 9999999976 69999999864
No 24
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.28 E-value=2.2e-12 Score=125.42 Aligned_cols=83 Identities=18% Similarity=0.288 Sum_probs=70.8
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+++.++|+++++ .|..+|+|||++++.|+++|++++||+. |+ +.|..++.
T Consensus 300 ~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~--------~~----------p~s~~~~~ 361 (417)
T 2i4i_A 300 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINF--------DL----------PSDIEEYV 361 (417)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEES--------SC----------CSSHHHHH
T ss_pred CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEE--------cC----------CCCHHHHH
Confidence 567778899999999999865 7889999999999999999999999983 32 35788999
Q ss_pred hhhccCCCCC-CceEEEcccccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAREQ 107 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~~~ 107 (350)
||+||+||.+ +|.||.+|++.+..
T Consensus 362 Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (417)
T 2i4i_A 362 HRIGRTGRVGNLGLATSFFNERNIN 386 (417)
T ss_dssp HHHTTBCC--CCEEEEEEECGGGGG
T ss_pred HhcCccccCCCCceEEEEEccccHH
Confidence 9999999986 79999999986543
No 25
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.28 E-value=2.9e-12 Score=121.80 Aligned_cols=82 Identities=20% Similarity=0.256 Sum_probs=72.1
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+++.++|+++++ .|..+|+|||++++.|+++|++++||+.+. +.|..++.
T Consensus 262 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~------------------~~s~~~~~ 323 (367)
T 1hv8_A 262 GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHL------------------PQNPESYM 323 (367)
T ss_dssp TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSC------------------CSCHHHHH
T ss_pred CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecC------------------CCCHHHhh
Confidence 456777899999999998865 889999999999999999999999998432 46888999
Q ss_pred hhhccCCCCC-CceEEEccccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRARE 106 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~~ 106 (350)
||+|||||.+ +|.||.++++.++
T Consensus 324 Q~~GR~~R~g~~g~~~~~~~~~~~ 347 (367)
T 1hv8_A 324 HRIGRTGRAGKKGKAISIINRREY 347 (367)
T ss_dssp HHSTTTCCSSSCCEEEEEECTTSH
T ss_pred hcccccccCCCccEEEEEEcHHHH
Confidence 9999999986 8999999987654
No 26
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.28 E-value=4.4e-12 Score=122.80 Aligned_cols=82 Identities=18% Similarity=0.292 Sum_probs=71.8
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+++.++|+++++ .|..+|+|||++++.|+++|++++||+. |+ +.|.+++.
T Consensus 282 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~--------~~----------p~s~~~~~ 343 (400)
T 1s2m_A 282 GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINF--------DF----------PKTAETYL 343 (400)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEES--------SC----------CSSHHHHH
T ss_pred CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEe--------CC----------CCCHHHHH
Confidence 566777899999999999865 8899999999999999999999999973 32 35788999
Q ss_pred hhhccCCCCC-CceEEEccccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRARE 106 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~~ 106 (350)
||+|||||.+ +|.||.+|++.+.
T Consensus 344 Qr~GR~gR~g~~g~~~~l~~~~~~ 367 (400)
T 1s2m_A 344 HRIGRSGRFGHLGLAINLINWNDR 367 (400)
T ss_dssp HHHCBSSCTTCCEEEEEEECGGGH
T ss_pred HhcchhcCCCCCceEEEEeccchH
Confidence 9999999985 8999999998654
No 27
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.26 E-value=2.8e-12 Score=113.09 Aligned_cols=81 Identities=20% Similarity=0.335 Sum_probs=57.4
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||++++++|+++++ .|..+|+|||++++.|+++|++.+||+ ||+ |.|.+++.
T Consensus 70 g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~--------~d~----------p~s~~~~~ 131 (185)
T 2jgn_A 70 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN--------FDL----------PSDIEEYV 131 (185)
T ss_dssp TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEE--------SSC----------CSSHHHHH
T ss_pred CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE--------eCC----------CCCHHHHH
Confidence 567888899999999988865 788999999999999999999999998 443 35788999
Q ss_pred hhhccCCCCC-CceEEEcccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
||.||+||.+ +|.|+.++++.+
T Consensus 132 Qr~GR~~R~g~~g~~~~~~~~~~ 154 (185)
T 2jgn_A 132 HRIGRTGRVGNLGLATSFFNERN 154 (185)
T ss_dssp HHHTTBCCTTSCEEEEEEECGGG
T ss_pred HHccccCCCCCCcEEEEEEchhh
Confidence 9999999986 899999998754
No 28
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.25 E-value=4.4e-12 Score=125.96 Aligned_cols=90 Identities=26% Similarity=0.173 Sum_probs=76.3
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+ +++++++ .|..+|+|||+++|.|++|| +.+|||+|..+.++|| ..++......|.|.+++.
T Consensus 195 ~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~ 268 (431)
T 2v6i_A 195 GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAA 268 (431)
T ss_dssp TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHH
T ss_pred CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHHHHH
Confidence 4567788997 4555644 89999999999999999999 9999999999999999 677778888999999999
Q ss_pred hhhccCCCCCC-ceEEEccc
Q psy6093 84 QRRGRAGRVQE-GVCYHLYS 102 (350)
Q Consensus 84 QR~GRaGR~~~-G~c~rLyt 102 (350)
||+||+||.++ +.|+-+|.
T Consensus 269 Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 269 QRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHHTTSSCCTTCCCCEEEEC
T ss_pred HhhhccCCCCCCCCeEEEEc
Confidence 99999999873 44555554
No 29
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.25 E-value=6.2e-12 Score=129.93 Aligned_cols=83 Identities=22% Similarity=0.207 Sum_probs=72.8
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+|++++|+++++ .|..+|||||++++.||++|+|++||+.+. +-|.+++.
T Consensus 291 g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~------------------p~s~~~y~ 352 (591)
T 2v1x_A 291 GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSM------------------SKSMENYY 352 (591)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSC------------------CSSHHHHH
T ss_pred CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCC------------------CCCHHHHH
Confidence 567888899999999999865 889999999999999999999999998433 23788999
Q ss_pred hhhccCCCCC-CceEEEcccccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAREQ 107 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~~~ 107 (350)
||+|||||.+ +|.|+.+|+..+..
T Consensus 353 Qr~GRaGR~G~~g~~i~l~~~~D~~ 377 (591)
T 2v1x_A 353 QESGRAGRDDMKADCILYYGFGDIF 377 (591)
T ss_dssp HHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred HHhccCCcCCCCceEEEEEChHHHH
Confidence 9999999986 89999999986543
No 30
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.25 E-value=5.3e-12 Score=112.03 Aligned_cols=80 Identities=20% Similarity=0.299 Sum_probs=68.8
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||++++++|+++++ .|..+|+|||++++.|+++|++++||+ ||+ |.|..++.
T Consensus 78 g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~--------~d~----------p~~~~~~~ 139 (191)
T 2p6n_A 78 GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVIN--------YDM----------PEEIENYV 139 (191)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE--------SSC----------CSSHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE--------eCC----------CCCHHHHH
Confidence 567788899999999998865 788899999999999999999999998 443 45778899
Q ss_pred hhhccCCCCC-CceEEEccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
||.||+||.+ +|.|+.+++..
T Consensus 140 qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 140 HRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp HHHTTSCC---CCEEEEEECTT
T ss_pred HHhCccccCCCCcEEEEEEcCc
Confidence 9999999986 89999999864
No 31
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.24 E-value=5.9e-12 Score=131.90 Aligned_cols=91 Identities=26% Similarity=0.292 Sum_probs=77.7
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceee--eecCCCccccccccccHhh
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSN--FDVKDNIATLKPEWISLAN 81 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~--yd~~~~~~~l~~~~iSka~ 81 (350)
++.+..+||. +|+++++ .|..+|+|||+++|.||+|| +++|||+|....+. ||...++..+...|.|.++
T Consensus 434 g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~ 508 (673)
T 2wv9_A 434 GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSAS 508 (673)
T ss_dssp TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHH
T ss_pred CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHH
Confidence 5677888994 5666654 89999999999999999999 99999999877654 6766677777889999999
Q ss_pred HHhhhccCCCC--CCceEEEccc
Q psy6093 82 AKQRRGRAGRV--QEGVCYHLYS 102 (350)
Q Consensus 82 ~~QR~GRaGR~--~~G~c~rLyt 102 (350)
+.||+||+||. ++|.||.++.
T Consensus 509 y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 509 AAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp HHHHHTTSSCCSSCCCEEEEECS
T ss_pred HHHHhhccCCCCCCCCEEEEEEe
Confidence 99999999998 4899999975
No 32
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.23 E-value=3.9e-12 Score=139.89 Aligned_cols=85 Identities=21% Similarity=0.296 Sum_probs=71.2
Q ss_pred eeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhh
Q psy6093 10 LQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRR 86 (350)
Q Consensus 10 ~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 86 (350)
+..+||+|++.+|..+++ .|..+|+|||++++.||+||++++||+.. ..||.. ...|+|.++|.||+
T Consensus 507 V~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~----~~~d~~------~~r~iS~~eyiQr~ 576 (1108)
T 3l9o_A 507 IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSV----RKWDGQ------QFRWVSGGEYIQMS 576 (1108)
T ss_dssp EEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCS----EEESSS------CEEECCHHHHHHHH
T ss_pred eeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecC----cccCcc------ccccCCHHHHHHhh
Confidence 556799999999999966 89999999999999999999999999742 234433 34589999999999
Q ss_pred ccCCCCC---CceEEEccccc
Q psy6093 87 GRAGRVQ---EGVCYHLYSRA 104 (350)
Q Consensus 87 GRaGR~~---~G~c~rLyt~~ 104 (350)
|||||.+ +|.||.++++.
T Consensus 577 GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 577 GRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp HHSCCSSSCSSEEEEEEECCC
T ss_pred cccCCCCCCCceEEEEEecCC
Confidence 9999998 89999999875
No 33
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.23 E-value=1.1e-11 Score=122.94 Aligned_cols=80 Identities=21% Similarity=0.344 Sum_probs=70.7
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||++++++|+++++ .|..+|+|||++++.|++||+|++||+ ||. |.|..++.
T Consensus 324 ~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~--------~d~----------p~~~~~y~ 385 (434)
T 2db3_A 324 EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN--------YDM----------PSKIDDYV 385 (434)
T ss_dssp TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE--------SSC----------CSSHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE--------ECC----------CCCHHHHH
Confidence 677888999999999999865 889999999999999999999999998 443 34778999
Q ss_pred hhhccCCCCC-CceEEEccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
||.||+||.+ +|.|+.+|+..
T Consensus 386 qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 386 HRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp HHHTTSSCTTCCEEEEEEECTT
T ss_pred HHhcccccCCCCCEEEEEEecc
Confidence 9999999986 89999999853
No 34
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.22 E-value=6.8e-12 Score=122.02 Aligned_cols=82 Identities=13% Similarity=0.298 Sum_probs=71.5
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||++++++|+++++ .|..+|+|||++++.|+++|++++||+. |+ +-|.+++.
T Consensus 300 ~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~--------~~----------p~s~~~~~ 361 (410)
T 2j0s_A 300 NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY--------DL----------PNNRELYI 361 (410)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEES--------SC----------CSSHHHHH
T ss_pred CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEE--------CC----------CCCHHHHH
Confidence 566778899999999999865 7889999999999999999999999983 32 35778999
Q ss_pred hhhccCCCCC-CceEEEccccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRARE 106 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~~ 106 (350)
||.||+||.+ +|.|+.++++.+.
T Consensus 362 Qr~GR~gR~g~~g~~~~~~~~~~~ 385 (410)
T 2j0s_A 362 HRIGRSGRYGRKGVAINFVKNDDI 385 (410)
T ss_dssp HHHTTSSGGGCCEEEEEEEEGGGH
T ss_pred HhcccccCCCCceEEEEEecHHHH
Confidence 9999999985 8999999988653
No 35
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.21 E-value=8.4e-12 Score=108.62 Aligned_cols=80 Identities=20% Similarity=0.259 Sum_probs=70.3
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||++++++|.++++ .|..+|+|||++++.|+++|++.+||+ ||+ |-|.+++.
T Consensus 55 ~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~--------~d~----------p~~~~~~~ 116 (172)
T 1t5i_A 55 NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN--------YDM----------PEDSDTYL 116 (172)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE--------SSC----------CSSHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEE--------ECC----------CCCHHHHH
Confidence 567788899999999998865 889999999999999999999999997 432 35788999
Q ss_pred hhhccCCCCC-CceEEEccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
||.||+||.+ +|.|+.+++..
T Consensus 117 qr~GR~~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 117 HRVARAGRFGTKGLAITFVSDE 138 (172)
T ss_dssp HHHHHHTGGGCCCEEEEEECSH
T ss_pred HHhcccccCCCCcEEEEEEcCh
Confidence 9999999986 79999998764
No 36
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=98.84 E-value=1.2e-12 Score=113.41 Aligned_cols=82 Identities=21% Similarity=0.211 Sum_probs=70.6
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||++++++|.++++ .|..+|+|||++++.|+++|++.+||+ ||+ |.|..++.
T Consensus 54 ~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~--------~~~----------p~~~~~~~ 115 (170)
T 2yjt_D 54 GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFN--------FDM----------PRSGDTYL 115 (170)
Confidence 567778899999999998865 788999999999999999999999997 332 35777899
Q ss_pred hhhccCCCCC-CceEEEccccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRARE 106 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~~ 106 (350)
||.||+||.+ +|.|+.+++..+.
T Consensus 116 qr~GR~~R~g~~g~~~~~~~~~~~ 139 (170)
T 2yjt_D 116 HRIGRTARAGRKGTAISLVEAHDH 139 (170)
Confidence 9999999986 8999999987543
No 37
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.20 E-value=1.5e-11 Score=125.23 Aligned_cols=82 Identities=23% Similarity=0.167 Sum_probs=72.0
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+|++++|+++++ .|..+|+|||++++.||++|+|++||+.+. |-|.+++.
T Consensus 260 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~------------------p~s~~~y~ 321 (523)
T 1oyw_A 260 GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI------------------PRNIESYY 321 (523)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSC------------------CSSHHHHH
T ss_pred CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECC------------------CCCHHHHH
Confidence 566778899999999999865 888999999999999999999999998332 35888999
Q ss_pred hhhccCCCCC-CceEEEccccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRARE 106 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~~ 106 (350)
||+|||||.+ +|.|+.+|+..+.
T Consensus 322 Qr~GRaGR~g~~~~~~l~~~~~d~ 345 (523)
T 1oyw_A 322 QETGRAGRDGLPAEAMLFYDPADM 345 (523)
T ss_dssp HHHTTSCTTSSCEEEEEEECHHHH
T ss_pred HHhccccCCCCCceEEEEeCHHHH
Confidence 9999999987 8999999987653
No 38
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.18 E-value=2.4e-11 Score=116.90 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=70.6
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||++++++|+++++ .|..+|+|||++++.|+++|++++||+.+. +-|.+++.
T Consensus 274 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~------------------p~s~~~~~ 335 (391)
T 1xti_A 274 NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM------------------PEDSDTYL 335 (391)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSC------------------CSSHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHH
Confidence 566778899999999998865 889999999999999999999999997332 35788999
Q ss_pred hhhccCCCCC-CceEEEcccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
||+|||||.+ +|.|+.++++..
T Consensus 336 Qr~GR~~R~g~~g~~~~~~~~~~ 358 (391)
T 1xti_A 336 HRVARAGRFGTKGLAITFVSDEN 358 (391)
T ss_dssp HHHCBCSSSCCCCEEEEEECSHH
T ss_pred HhcccccCCCCceEEEEEEcccc
Confidence 9999999985 899999998753
No 39
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.17 E-value=2.5e-11 Score=123.53 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=71.3
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+|++++|.++++ .|..+|+|||++++.||++|+|++||+ ||. |.|..++.
T Consensus 366 ~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--------~~~----------p~s~~~y~ 427 (563)
T 3i5x_A 366 DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IGV----------PSELANYI 427 (563)
T ss_dssp TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ESC----------CSSTTHHH
T ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE--------ECC----------CCchhhhh
Confidence 677888899999999999965 889999999999999999999999997 432 34778999
Q ss_pred hhhccCCCCC-CceEEEcccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
||+|||||.+ +|.|+.++++.+
T Consensus 428 Qr~GRagR~g~~g~~i~~~~~~e 450 (563)
T 3i5x_A 428 HRIGRTARSGKEGSSVLFICKDE 450 (563)
T ss_dssp HHHTTSSCTTCCEEEEEEEEGGG
T ss_pred hhcCccccCCCCceEEEEEchhH
Confidence 9999999986 899999998754
No 40
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.17 E-value=4.1e-11 Score=130.67 Aligned_cols=85 Identities=21% Similarity=0.313 Sum_probs=73.3
Q ss_pred eeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhh
Q psy6093 10 LQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRR 86 (350)
Q Consensus 10 ~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 86 (350)
+..+||+|++++|+.+++ .|..||+|||++++.||++|++++||+. ...||... ..|+|.+++.||+
T Consensus 409 I~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~~------~rp~s~~~y~Qr~ 478 (1010)
T 2xgj_A 409 IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQQ------FRWVSGGEYIQMS 478 (1010)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSSC------EEECCHHHHHHHH
T ss_pred eeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccCCcC------CccCCHHHHhHhh
Confidence 455799999999998855 8999999999999999999999999974 34566542 4688999999999
Q ss_pred ccCCCCC---CceEEEccccc
Q psy6093 87 GRAGRVQ---EGVCYHLYSRA 104 (350)
Q Consensus 87 GRaGR~~---~G~c~rLyt~~ 104 (350)
|||||.+ .|.||.++++.
T Consensus 479 GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 479 GRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp TTBCCTTTCSSEEEEEEECSC
T ss_pred hhcccCCCCCceEEEEEECCC
Confidence 9999997 59999999864
No 41
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.13 E-value=4.6e-12 Score=126.49 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=0.0
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||++++++|.++++ .|..+|+|||++++.|+++|+|++||+.+..... ..+.|..++.
T Consensus 357 ~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~------------~~~~s~~~~~ 424 (479)
T 3fmp_B 357 GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDK------------DGNPDNETYL 424 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCC------------ccCCCHHHHH
Confidence 456777899999999999865 8899999999999999999999999984432221 1245778899
Q ss_pred hhhccCCCCC-CceEEEcccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
||+|||||.+ +|.|+.+++...
T Consensus 425 Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 425 HRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp -----------------------
T ss_pred HHhcccccCCCCceEEEEEcCcc
Confidence 9999999976 799999998643
No 42
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.13 E-value=4.9e-12 Score=121.73 Aligned_cols=84 Identities=18% Similarity=0.328 Sum_probs=0.0
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||++++++|+++++ .|..+|+|||++++.|+++|++++||+.+. +.|..++.
T Consensus 283 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~------------------p~s~~~~~ 344 (394)
T 1fuu_A 283 KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDL------------------PANKENYI 344 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHH
Confidence 566778899999999998865 788999999999999999999999997332 45778899
Q ss_pred hhhccCCCCC-CceEEEccccccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAREQT 108 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~~~~ 108 (350)
||+||+||.+ +|.||.++++.+...
T Consensus 345 Qr~GR~~R~g~~g~~~~~~~~~~~~~ 370 (394)
T 1fuu_A 345 HRIGRGGRFGRKGVAINFVTNEDVGA 370 (394)
T ss_dssp --------------------------
T ss_pred HHcCcccCCCCCceEEEEEchhHHHH
Confidence 9999999985 899999999865433
No 43
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.12 E-value=8.7e-12 Score=125.57 Aligned_cols=83 Identities=22% Similarity=0.283 Sum_probs=32.4
Q ss_pred ccceeeeccCCCCCHHHHHHhcc---C-CCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHh
Q psy6093 5 FQIWFLQCPSSGLKHLQNKSVFE---L-GVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLA 80 (350)
Q Consensus 5 ~~~~~~~~lHs~l~~~~q~~vf~---~-g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka 80 (350)
+.+.....+||++++++|+++++ . |..+|+|||++++.|+++|++++||. ||+ |-|..
T Consensus 424 ~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~--------~d~----------p~s~~ 485 (556)
T 4a2p_A 424 LMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL--------YEY----------SGNVT 485 (556)
T ss_dssp ------------------------------CCEEEEEC-----------CEEEE--------ETC----------CSCHH
T ss_pred EEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEE--------eCC----------CCCHH
Confidence 34555566799999999999965 6 88999999999999999999999997 655 34778
Q ss_pred hHHhhhccCCCCCCceEEEccccccc
Q psy6093 81 NAKQRRGRAGRVQEGVCYHLYSRARE 106 (350)
Q Consensus 81 ~~~QR~GRaGR~~~G~c~rLyt~~~~ 106 (350)
++.||+|| ||.++|.||.|+++...
T Consensus 486 ~~~Qr~GR-gR~~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 486 KMIQVRGR-GRAAGSKCILVTSKTEV 510 (556)
T ss_dssp HHHHC---------CCEEEEESCHHH
T ss_pred HHHHhcCC-CCCCCceEEEEEeCcch
Confidence 89999999 99999999999998653
No 44
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.12 E-value=6.1e-11 Score=121.59 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=71.1
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+|++++|.++++ .|..+|+|||++++.||++|+|++||+ ||+ |-|..++.
T Consensus 315 ~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~--------~~~----------p~s~~~y~ 376 (579)
T 3sqw_A 315 DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IGV----------PSELANYI 376 (579)
T ss_dssp TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ESC----------CSSTTHHH
T ss_pred CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE--------cCC----------CCCHHHhh
Confidence 567888899999999999865 889999999999999999999999997 432 34778999
Q ss_pred hhhccCCCCC-CceEEEcccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
||+|||||.+ +|.|+.++++.+
T Consensus 377 Qr~GRagR~g~~g~~i~~~~~~e 399 (579)
T 3sqw_A 377 HRIGRTARSGKEGSSVLFICKDE 399 (579)
T ss_dssp HHHTTSSCTTCCEEEEEEEEGGG
T ss_pred hhccccccCCCCceEEEEEcccH
Confidence 9999999987 899999998754
No 45
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.11 E-value=7.1e-12 Score=125.82 Aligned_cols=82 Identities=27% Similarity=0.413 Sum_probs=51.4
Q ss_pred ccceeeeccCCCCCHHHHHHhcc---C-CCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHh
Q psy6093 5 FQIWFLQCPSSGLKHLQNKSVFE---L-GVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLA 80 (350)
Q Consensus 5 ~~~~~~~~lHs~l~~~~q~~vf~---~-g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka 80 (350)
+.++....+||+|++++|+++++ . |..+|+|||++++.|+++|++++||+ ||+.. |..
T Consensus 423 ~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~--------~d~p~----------s~~ 484 (555)
T 3tbk_A 423 LTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVIL--------YEYVG----------NVI 484 (555)
T ss_dssp CCC--------------------------CCSEEEECCCTTCCEETTSCSEEEE--------ESCCS----------SCC
T ss_pred EEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEE--------eCCCC----------CHH
Confidence 44555666788999999999965 6 88999999999999999999999997 66543 445
Q ss_pred hHHhhhccCCCCCCceEEEcccccc
Q psy6093 81 NAKQRRGRAGRVQEGVCYHLYSRAR 105 (350)
Q Consensus 81 ~~~QR~GRaGR~~~G~c~rLyt~~~ 105 (350)
++.||.|| ||..+|.||.|+++..
T Consensus 485 ~~~Qr~GR-gR~~~g~~~~l~~~~~ 508 (555)
T 3tbk_A 485 KMIQTRGR-GRARDSKCFLLTSSAD 508 (555)
T ss_dssp CEECSSCC-CTTTSCEEEEEESCHH
T ss_pred HHHHhcCc-CcCCCceEEEEEcCCC
Confidence 66899999 9999999999998864
No 46
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.10 E-value=7e-11 Score=110.99 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=66.2
Q ss_pred eeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhh
Q psy6093 10 LQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRR 86 (350)
Q Consensus 10 ~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 86 (350)
+..+||+++.++|+++++ .|..+|+|||++++.|+++|++++||+. |+ +.|.+++.||+
T Consensus 243 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~--------~~----------~~s~~~~~Q~~ 304 (337)
T 2z0m_A 243 AIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINF--------DA----------PQDLRTYIHRI 304 (337)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEES--------SC----------CSSHHHHHHHH
T ss_pred hhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEe--------cC----------CCCHHHhhHhc
Confidence 456799999999999865 8899999999999999999999999983 32 34778999999
Q ss_pred ccCCCCC-CceEEEcccc
Q psy6093 87 GRAGRVQ-EGVCYHLYSR 103 (350)
Q Consensus 87 GRaGR~~-~G~c~rLyt~ 103 (350)
|||||.+ +|.|+.+++.
T Consensus 305 GR~gR~g~~g~~~~~~~~ 322 (337)
T 2z0m_A 305 GRTGRMGRKGEAITFILN 322 (337)
T ss_dssp TTBCGGGCCEEEEEEESS
T ss_pred CccccCCCCceEEEEEeC
Confidence 9999985 8999998873
No 47
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.04 E-value=3.1e-11 Score=122.10 Aligned_cols=105 Identities=21% Similarity=0.336 Sum_probs=60.2
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+.++||+++.++|+++++ .|..+|+|||++++.|+++|++++||+.+..+. ...+-|..++.
T Consensus 381 ~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~------------~~~~~s~~~~~ 448 (508)
T 3fho_A 381 GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLD------------QAGRPDPQTYL 448 (508)
T ss_dssp TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----------------CTHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCc------------ccCCCCHHHHH
Confidence 456778899999999998865 899999999999999999999999997432211 11225778899
Q ss_pred hhhccCCCCC-CceEEEcccccc----cccccCCCCccccccchH
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRAR----EQTFQDYPLPEIQRTRLD 123 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~~----~~~~~~~~~pEi~r~~L~ 123 (350)
||+|||||.+ +|.|+.+++... ...+.++...++.+.+..
T Consensus 449 Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~ 493 (508)
T 3fho_A 449 HRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 493 (508)
T ss_dssp HTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-----
T ss_pred HHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCc
Confidence 9999999987 899999988532 223334444444444433
No 48
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.03 E-value=9.7e-11 Score=114.33 Aligned_cols=81 Identities=23% Similarity=0.320 Sum_probs=67.3
Q ss_pred ceeeeccCC--------CCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccc
Q psy6093 7 IWFLQCPSS--------GLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPE 75 (350)
Q Consensus 7 ~~~~~~lHs--------~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~ 75 (350)
++.+..+|| +++.++|+++++ .|..+|+|||++++.|+++|++.+||. ||+
T Consensus 385 ~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~--------~d~---------- 446 (494)
T 1wp9_A 385 GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF--------YEP---------- 446 (494)
T ss_dssp TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEE--------SSC----------
T ss_pred CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEE--------eCC----------
Confidence 566777899 999999998865 788899999999999999999999996 332
Q ss_pred cccHhhHHhhhccCCCCCCceEEEcccccc
Q psy6093 76 WISLANAKQRRGRAGRVQEGVCYHLYSRAR 105 (350)
Q Consensus 76 ~iSka~~~QR~GRaGR~~~G~c~rLyt~~~ 105 (350)
|-|.+++.||.|||||.++|.+|+|+++..
T Consensus 447 ~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t 476 (494)
T 1wp9_A 447 VPSAIRSIQRRGRTGRHMPGRVIILMAKGT 476 (494)
T ss_dssp CHHHHHHHHHHTTSCSCCCSEEEEEEETTS
T ss_pred CCCHHHHHHHHhhccCCCCceEEEEEecCC
Confidence 346778999999999999999999999854
No 49
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.98 E-value=6e-10 Score=116.53 Aligned_cols=85 Identities=18% Similarity=0.162 Sum_probs=72.0
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||++++.+|.++++ .|..+|++|||+++.|+++|+|++||.++..+. ..+.|..++.
T Consensus 463 gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~-------------G~p~s~~~~i 529 (664)
T 1c4o_A 463 GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKE-------------GFLRSERSLI 529 (664)
T ss_dssp TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSC-------------SGGGSHHHHH
T ss_pred CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCccc-------------CCCCCHHHHH
Confidence 456677899999999999954 899999999999999999999999998543221 1256888999
Q ss_pred hhhccCCCCCCceEEEccccc
Q psy6093 84 QRRGRAGRVQEGVCYHLYSRA 104 (350)
Q Consensus 84 QR~GRaGR~~~G~c~rLyt~~ 104 (350)
||+|||||.++|.|+.++++.
T Consensus 530 Qr~GRagR~~~G~~i~~~~~~ 550 (664)
T 1c4o_A 530 QTIGRAARNARGEVWLYADRV 550 (664)
T ss_dssp HHHGGGTTSTTCEEEEECSSC
T ss_pred HHHCccCcCCCCEEEEEEcCC
Confidence 999999999999999988764
No 50
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.96 E-value=2.4e-10 Score=121.61 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=37.9
Q ss_pred ccceeeeccCCCCCHHHHHHhcc---C-CCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHh
Q psy6093 5 FQIWFLQCPSSGLKHLQNKSVFE---L-GVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLA 80 (350)
Q Consensus 5 ~~~~~~~~lHs~l~~~~q~~vf~---~-g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka 80 (350)
|.+.....+||++++++|+++++ . |..+|+|||++++.||++|++++||. ||+ |-|..
T Consensus 665 l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~--------yd~----------p~s~~ 726 (797)
T 4a2q_A 665 LMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL--------YEY----------SGNVT 726 (797)
T ss_dssp C----------------------------CCSEEEEECC-------CCCSEEEE--------ESC----------CSCHH
T ss_pred EEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEE--------eCC----------CCCHH
Confidence 34556667799999999999965 5 88999999999999999999999997 655 34678
Q ss_pred hHHhhhccCCCCCCceEEEcccccc
Q psy6093 81 NAKQRRGRAGRVQEGVCYHLYSRAR 105 (350)
Q Consensus 81 ~~~QR~GRaGR~~~G~c~rLyt~~~ 105 (350)
++.||+|| ||.++|.||+|+++..
T Consensus 727 ~~iQr~GR-GR~~~g~~i~l~~~~~ 750 (797)
T 4a2q_A 727 KMIQVRGR-GRAAGSKCILVTSKTE 750 (797)
T ss_dssp HHHTC--------CCCEEEEECCHH
T ss_pred HHHHhcCC-CCCCCceEEEEEeCCc
Confidence 89999999 9999999999998864
No 51
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.95 E-value=1.6e-10 Score=122.75 Aligned_cols=81 Identities=25% Similarity=0.329 Sum_probs=67.2
Q ss_pred ccceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhh
Q psy6093 5 FQIWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLAN 81 (350)
Q Consensus 5 ~~~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~ 81 (350)
|.++.+..+||+|++++|+++++ .|..+|+|||+++|.||++|++++||. ||+.. .+.++
T Consensus 611 ~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi--------~d~~r---------~~l~~ 673 (780)
T 1gm5_A 611 FPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI--------ENPER---------FGLAQ 673 (780)
T ss_dssp C---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB--------CSCSS---------SCTTH
T ss_pred cCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE--------eCCCC---------CCHHH
Confidence 44677888999999999998865 899999999999999999999999996 44321 25578
Q ss_pred HHhhhccCCCCC-CceEEEccc
Q psy6093 82 AKQRRGRAGRVQ-EGVCYHLYS 102 (350)
Q Consensus 82 ~~QR~GRaGR~~-~G~c~rLyt 102 (350)
+.||+||+||.+ +|.||.+++
T Consensus 674 l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 674 LHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp HHHHHHTSCCSSTTCEEECCCC
T ss_pred HHHHhcccCcCCCCCEEEEEEC
Confidence 899999999975 899999987
No 52
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.95 E-value=7.7e-10 Score=115.69 Aligned_cols=85 Identities=20% Similarity=0.193 Sum_probs=72.0
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||++++.+|.++++ .|..+|++||++++.|+++|+|++||.++..+. | .+.|..++.
T Consensus 469 gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~-------G------~p~s~~~~i 535 (661)
T 2d7d_A 469 GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKE-------G------FLRSERSLI 535 (661)
T ss_dssp TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCC-------T------TTTSHHHHH
T ss_pred CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccc-------c------CCCCHHHHH
Confidence 566777899999999999954 788999999999999999999999998544221 1 256888999
Q ss_pred hhhccCCCCCCceEEEccccc
Q psy6093 84 QRRGRAGRVQEGVCYHLYSRA 104 (350)
Q Consensus 84 QR~GRaGR~~~G~c~rLyt~~ 104 (350)
||+|||||.++|.|+.++++.
T Consensus 536 Qr~GRagR~~~G~~i~~~~~~ 556 (661)
T 2d7d_A 536 QTIGRAARNAEGRVIMYADKI 556 (661)
T ss_dssp HHHHTTTTSTTCEEEEECSSC
T ss_pred HHhCcccCCCCCEEEEEEeCC
Confidence 999999999999999988764
No 53
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.93 E-value=2.9e-10 Score=118.44 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=59.3
Q ss_pred ceeeeccCCC--------CCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccc
Q psy6093 7 IWFLQCPSSG--------LKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPE 75 (350)
Q Consensus 7 ~~~~~~lHs~--------l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~ 75 (350)
++.+..+||+ |++++|+++++ .|..+|+|||++++.||++|+|++||. ||+.
T Consensus 430 g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~--------~d~p--------- 492 (699)
T 4gl2_A 430 GVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIR--------YGLV--------- 492 (699)
T ss_dssp ---CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEE--------ESCC---------
T ss_pred CcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEE--------eCCC---------
Confidence 6788889999 99999999965 889999999999999999999999996 6643
Q ss_pred cccHhhHHhhhccCCCCCCceEEEcccc
Q psy6093 76 WISLANAKQRRGRAGRVQEGVCYHLYSR 103 (350)
Q Consensus 76 ~iSka~~~QR~GRaGR~~~G~c~rLyt~ 103 (350)
-|..++.||+|||||.+ .++.++..
T Consensus 493 -~s~~~~~Qr~GRArr~g--~~~~l~~~ 517 (699)
T 4gl2_A 493 -TNEIAMVQARGRARADE--STYVLVAH 517 (699)
T ss_dssp -CCHHHHHHHHTTSCSSS--CEEEEEEE
T ss_pred -CCHHHHHHHcCCCCCCC--ceEEEEEe
Confidence 46788999999988754 55555443
No 54
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.91 E-value=3.9e-10 Score=122.20 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=38.8
Q ss_pred ccceeeeccCCCCCHHHHHHhcc---C-CCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHh
Q psy6093 5 FQIWFLQCPSSGLKHLQNKSVFE---L-GVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLA 80 (350)
Q Consensus 5 ~~~~~~~~lHs~l~~~~q~~vf~---~-g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka 80 (350)
+.|.....+||+++.++|+++++ . |..+|+|||++++.||+||++.+||. ||+ |-|..
T Consensus 665 l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~--------yD~----------p~s~~ 726 (936)
T 4a2w_A 665 LMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL--------YEY----------SGNVT 726 (936)
T ss_dssp C----------------------------CCSEEEEECC------CCCCSEEEE--------ESC----------CSCSH
T ss_pred EecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE--------eCC----------CCCHH
Confidence 33555666799999999999965 5 88999999999999999999999997 665 34667
Q ss_pred hHHhhhccCCCCCCceEEEcccccc
Q psy6093 81 NAKQRRGRAGRVQEGVCYHLYSRAR 105 (350)
Q Consensus 81 ~~~QR~GRaGR~~~G~c~rLyt~~~ 105 (350)
++.||+|| ||.++|.||.|+++..
T Consensus 727 ~~iQr~GR-GR~~~g~vi~Li~~~t 750 (936)
T 4a2w_A 727 KMIQVRGR-GRAAGSKCILVTSKTE 750 (936)
T ss_dssp HHHCC--------CCCEEEEESCHH
T ss_pred HHHHhcCC-CCCCCCEEEEEEeCCC
Confidence 89999999 9999999999998864
No 55
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.80 E-value=5.5e-09 Score=115.39 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=67.5
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
++.+..+||+|+.++|+++++ .|..+|+|||+++|+|++||++++||. +++. +.+.+++.
T Consensus 838 ~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi--------~~~~---------~~~l~~l~ 900 (1151)
T 2eyq_A 838 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--------ERAD---------HFGLAQLH 900 (1151)
T ss_dssp TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE--------TTTT---------SSCHHHHH
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEE--------eCCC---------CCCHHHHH
Confidence 556778899999999998865 889999999999999999999999994 2221 12446789
Q ss_pred hhhccCCCCC-CceEEEccccc
Q psy6093 84 QRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 84 QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
||+||+||.+ +|.||.++++.
T Consensus 901 Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 901 QLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp HHHTTCCBTTBCEEEEEEECCG
T ss_pred HHHhccCcCCCceEEEEEECCc
Confidence 9999999976 89999998764
No 56
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.72 E-value=1.2e-08 Score=99.47 Aligned_cols=78 Identities=18% Similarity=0.214 Sum_probs=61.0
Q ss_pred ceeee-ccCCCCCHHHHHHhccCCCceEEEe----cCccccCCCCCC-ccEEEeCCCcceeeeecCCCccccccccccHh
Q psy6093 7 IWFLQ-CPSSGLKHLQNKSVFELGVRKIVLA----TNIAETSITIDD-IVYVVDCGKTKMSNFDVKDNIATLKPEWISLA 80 (350)
Q Consensus 7 ~~~~~-~lHs~l~~~~q~~vf~~g~rkvIla----TniaEtsvtip~-v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka 80 (350)
++.+. .+||. ..+ .+-|+.|..+|+|| |++++.|+++|+ |++||+.+..+ + .|..
T Consensus 276 ~~~~~~~~h~~--~r~-~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~--------~--------~~~~ 336 (414)
T 3oiy_A 276 KFNVGETWSEF--EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS--------G--------PDVY 336 (414)
T ss_dssp TCCEEESSSCH--HHH-HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCT--------T--------TCHH
T ss_pred CCceehhhcCc--chH-HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCC--------C--------CCHH
Confidence 55666 77885 212 33355899999999 999999999999 99999843322 1 5788
Q ss_pred hHHhhhccCCCCC-----CceEEEcccc
Q psy6093 81 NAKQRRGRAGRVQ-----EGVCYHLYSR 103 (350)
Q Consensus 81 ~~~QR~GRaGR~~-----~G~c~rLyt~ 103 (350)
++.||+|||||.+ +|.||.++.+
T Consensus 337 ~y~qr~GR~gR~g~~~~~~g~~i~~~~~ 364 (414)
T 3oiy_A 337 TYIQASGRSSRILNGVLVKGVSVIFEED 364 (414)
T ss_dssp HHHHHHGGGCCEETTEECCEEEEEECCC
T ss_pred HHHHHhCccccCCCCCCcceEEEEEEcc
Confidence 9999999999975 7999999843
No 57
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.71 E-value=5e-09 Score=104.16 Aligned_cols=78 Identities=22% Similarity=0.253 Sum_probs=65.3
Q ss_pred eeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhh
Q psy6093 10 LQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRR 86 (350)
Q Consensus 10 ~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 86 (350)
+..+||+++.++|+++++ .|..+|+|||++++.|+++|++++||. ||+ +-|.+++.||.
T Consensus 371 ~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~--------~~~----------~~s~~~~~Q~~ 432 (472)
T 2fwr_A 371 IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI--------MSG----------SGSAREYIQRL 432 (472)
T ss_dssp CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE--------ECC----------SSCCHHHHHHH
T ss_pred cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEE--------ECC----------CCCHHHHHHHH
Confidence 456799999999998865 788999999999999999999999997 443 34678899999
Q ss_pred ccCCCCCCc----eEEEcccccc
Q psy6093 87 GRAGRVQEG----VCYHLYSRAR 105 (350)
Q Consensus 87 GRaGR~~~G----~c~rLyt~~~ 105 (350)
|||||.++| .+|.++++..
T Consensus 433 GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 433 GRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp HHSBCCCTTTCCEEEEEEEECSC
T ss_pred hhccCCCCCCceEEEEEEEeCCC
Confidence 999999877 4667777643
No 58
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.65 E-value=6e-09 Score=104.55 Aligned_cols=77 Identities=17% Similarity=0.072 Sum_probs=63.9
Q ss_pred eeeccCCCCCHHHHHHhcc---CCCceEEEec-CccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHh
Q psy6093 9 FLQCPSSGLKHLQNKSVFE---LGVRKIVLAT-NIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQ 84 (350)
Q Consensus 9 ~~~~lHs~l~~~~q~~vf~---~g~rkvIlaT-niaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~Q 84 (350)
.+..+||+++.++|+++.+ .|..+|+||| +++|+|+++|++++||. |++ +-|.+++.|
T Consensus 373 ~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~--------~~~----------~~s~~~~~Q 434 (510)
T 2oca_A 373 KVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL--------AHG----------VKSKIIVLQ 434 (510)
T ss_dssp SEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE--------SSC----------CCSCCHHHH
T ss_pred CeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE--------eCC----------CCCHHHHHH
Confidence 5667799999999998855 7888999999 99999999999999995 332 235678999
Q ss_pred hhccCCCCCCce-EEEcccc
Q psy6093 85 RRGRAGRVQEGV-CYHLYSR 103 (350)
Q Consensus 85 R~GRaGR~~~G~-c~rLyt~ 103 (350)
|+||+||.++|. ++.+|+-
T Consensus 435 ~~GR~gR~g~~~~~v~i~~~ 454 (510)
T 2oca_A 435 TIGRVLRKHGSKTIATVWDL 454 (510)
T ss_dssp HHHHHHTTTCCCCCCEEEEE
T ss_pred HHhcccccCCCCceEEEEEe
Confidence 999999998664 6677663
No 59
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.49 E-value=6.3e-08 Score=106.13 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=36.9
Q ss_pred eeeeccCCCCCHHHHHHhccCCCceEEEe----cCccccCCCCCCc-cEEEeCCCcc
Q psy6093 8 WFLQCPSSGLKHLQNKSVFELGVRKIVLA----TNIAETSITIDDI-VYVVDCGKTK 59 (350)
Q Consensus 8 ~~~~~lHs~l~~~~q~~vf~~g~rkvIla----TniaEtsvtip~v-~~VID~G~~k 59 (350)
+.+..+||++... .+-|+.|..+|+|| ||+++.||+||+| ++||+.|..+
T Consensus 299 ~~v~~lhg~~~~~--l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~ 353 (1054)
T 1gku_B 299 FRIGIVTATKKGD--YEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS 353 (1054)
T ss_dssp SCEEECTTSSSHH--HHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCE
T ss_pred cCeeEEeccHHHH--HHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCc
Confidence 5677889999533 33477899999999 9999999999995 9999999883
No 60
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.47 E-value=1.3e-07 Score=100.36 Aligned_cols=82 Identities=23% Similarity=0.195 Sum_probs=65.9
Q ss_pred cceeeeccCCCCCHHHHHHhccCC-CceEEEecCccccCCCCC--------CccEEEeCCCcceeeeecCCCcccccccc
Q psy6093 6 QIWFLQCPSSGLKHLQNKSVFELG-VRKIVLATNIAETSITID--------DIVYVVDCGKTKMSNFDVKDNIATLKPEW 76 (350)
Q Consensus 6 ~~~~~~~lHs~l~~~~q~~vf~~g-~rkvIlaTniaEtsvtip--------~v~~VID~G~~k~~~yd~~~~~~~l~~~~ 76 (350)
.++....+||.+...++..+.+.| .-+|.||||+|..|++|+ |+.+||++ | .|
T Consensus 455 ~gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~--------d----------~p 516 (844)
T 1tf5_A 455 KGIPHQVLNAKNHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLGEGVKELGGLAVVGT--------E----------RH 516 (844)
T ss_dssp TTCCCEEECSSCHHHHHHHHTTTTSTTCEEEEETTSSTTCCCCCCTTSGGGTSEEEEES--------S----------CC
T ss_pred CCCCEEEeeCCccHHHHHHHHHcCCCCeEEEeCCccccCcCccccchhhhcCCcEEEEe--------c----------CC
Confidence 377888899999887777664422 347999999999999999 88999983 2 23
Q ss_pred ccHhhHHhhhccCCCCC-CceEEEcccccc
Q psy6093 77 ISLANAKQRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 77 iSka~~~QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
-|...+.||.||+||.+ ||.++-+++.++
T Consensus 517 ~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 517 ESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp SSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred CCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 56778999999999987 899988887643
No 61
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.29 E-value=5.4e-07 Score=94.26 Aligned_cols=81 Identities=21% Similarity=0.140 Sum_probs=61.2
Q ss_pred ceeeeccCCCCCHHHHHHhcc-CCCceEEEecCccccCCCCC--------CccEEEeCCCcceeeeecCCCccccccccc
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE-LGVRKIVLATNIAETSITID--------DIVYVVDCGKTKMSNFDVKDNIATLKPEWI 77 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~-~g~rkvIlaTniaEtsvtip--------~v~~VID~G~~k~~~yd~~~~~~~l~~~~i 77 (350)
++....+||+....++..+-+ .+.-.|+||||+|..|++|+ |+.+||++. .|-
T Consensus 498 Gi~~~vLhgkq~~rE~~ii~~ag~~g~VtVATdmAgRGtDI~lg~~V~~~GglhVInte------------------~Pe 559 (822)
T 3jux_A 498 GIPHQVLNAKYHEKEAEIVAKAGQKGMVTIATNMAGRGTDIKLGPGVAELGGLCIIGTE------------------RHE 559 (822)
T ss_dssp TCCCEEECSCHHHHHHHHHHHHHSTTCEEEEETTTTTTCCCCCCTTTTTTTSCEEEESS------------------CCS
T ss_pred CCCEEEeeCCchHHHHHHHHhCCCCCeEEEEcchhhCCcCccCCcchhhcCCCEEEecC------------------CCC
Confidence 667778899965555544422 12236999999999999998 667999842 245
Q ss_pred cHhhHHhhhccCCCCC-CceEEEcccccc
Q psy6093 78 SLANAKQRRGRAGRVQ-EGVCYHLYSRAR 105 (350)
Q Consensus 78 Ska~~~QR~GRaGR~~-~G~c~rLyt~~~ 105 (350)
|...+.||.||+||.+ ||.++-+.+.++
T Consensus 560 s~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 560 SRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp SHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred CHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 6778899999999998 899988877653
No 62
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.27 E-value=5.4e-07 Score=84.05 Aligned_cols=80 Identities=19% Similarity=0.114 Sum_probs=52.8
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CC-Cce-EEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhh
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LG-VRK-IVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLAN 81 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g-~rk-vIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~ 81 (350)
++.+..+||+++.++|+++++ .+ ..+ +++||.++..|++++++.+||. ||+.- +.+.
T Consensus 137 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~--------~d~~w----------np~~ 198 (271)
T 1z5z_A 137 NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH--------FDRWW----------NPAV 198 (271)
T ss_dssp CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEE--------CSCCS----------CTTT
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEE--------ECCCC----------ChhH
Confidence 566777899999999988854 33 344 7899999999999999999997 55532 3445
Q ss_pred HHhhhccCCCCC---CceEEEccccc
Q psy6093 82 AKQRRGRAGRVQ---EGVCYHLYSRA 104 (350)
Q Consensus 82 ~~QR~GRaGR~~---~G~c~rLyt~~ 104 (350)
..||.||++|.+ +-..|+++++.
T Consensus 199 ~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 199 EDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp C--------------CCEEEEEEETT
T ss_pred HHHHHHhccccCCCCceEEEEEeeCC
Confidence 678999988875 45578888874
No 63
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.24 E-value=8.5e-07 Score=96.41 Aligned_cols=80 Identities=15% Similarity=0.095 Sum_probs=65.5
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCC--ceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhh
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGV--RKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLAN 81 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~--rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~ 81 (350)
++.+..+||+++.++|.++.+ .|. .+|+|||++++.|+++|++.+||. ||+ |-+.+.
T Consensus 528 g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~--------~d~----------p~~~~~ 589 (968)
T 3dmq_A 528 GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVM--------FDL----------PFNPDL 589 (968)
T ss_dssp CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEEC--------SSC----------CSSHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEE--------ecC----------CCCHHH
Confidence 677888899999999998854 665 899999999999999999999996 544 346678
Q ss_pred HHhhhccCCCCC-Cc--eEEEccccc
Q psy6093 82 AKQRRGRAGRVQ-EG--VCYHLYSRA 104 (350)
Q Consensus 82 ~~QR~GRaGR~~-~G--~c~rLyt~~ 104 (350)
+.||.||+||.+ .| ..|+++.+.
T Consensus 590 ~~Q~~GR~~R~Gq~~~v~v~~~~~~~ 615 (968)
T 3dmq_A 590 LEQRIGRLDRIGQAHDIQIHVPYLEK 615 (968)
T ss_dssp HHHHHHTTSCSSSCSCCEEEEEEETT
T ss_pred HHHHhhccccCCCCceEEEEEecCCC
Confidence 899999999976 34 466666654
No 64
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.19 E-value=2e-07 Score=102.56 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=40.5
Q ss_pred ceeee-ccCCCCCHHHHHHhccCCCceEEEe----cCccccCCCCCC-ccEEEeCCCcc
Q psy6093 7 IWFLQ-CPSSGLKHLQNKSVFELGVRKIVLA----TNIAETSITIDD-IVYVVDCGKTK 59 (350)
Q Consensus 7 ~~~~~-~lHs~l~~~~q~~vf~~g~rkvIla----TniaEtsvtip~-v~~VID~G~~k 59 (350)
++.+. .+||. ..+ .+-|..|..+|+|| |++++.||+||+ |++||+.|+.+
T Consensus 333 g~~~~~~lhg~--rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 333 KFNVGETWSEF--EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TCCEEESSSSH--HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCeeeEecCc--HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 56676 88993 111 22355899999999 999999999999 99999999887
No 65
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.12 E-value=2.4e-06 Score=90.62 Aligned_cols=78 Identities=19% Similarity=0.158 Sum_probs=62.2
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCC--------------------------------c--
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDD--------------------------------I-- 49 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~--------------------------------v-- 49 (350)
++....|||.....++..+-+ +| .|.||||+|..|++|+. |
T Consensus 465 gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 542 (853)
T 2fsf_A 465 GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLE 542 (853)
T ss_dssp TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHh
Confidence 677788899987777766643 55 69999999999999997 4
Q ss_pred ---cEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccCCCCC-CceEEEccccc
Q psy6093 50 ---VYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 50 ---~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
.|||++.+ +-|+..+.||+||+||.+ ||.+.-+.+.+
T Consensus 543 ~GGl~VI~te~------------------pes~riy~qr~GRTGRqGd~G~s~~fls~e 583 (853)
T 2fsf_A 543 AGGLHIIGTER------------------HESRRIDNQLRGRSGRQGDAGSSRFYLSME 583 (853)
T ss_dssp TTSEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEETT
T ss_pred cCCcEEEEccC------------------CCCHHHHHhhccccccCCCCeeEEEEeccc
Confidence 59997422 356778999999999987 89987776654
No 66
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.07 E-value=1.8e-06 Score=88.25 Aligned_cols=66 Identities=23% Similarity=0.167 Sum_probs=50.6
Q ss_pred eeccCCCCCHHHHHHh---ccCCCce---EEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHH
Q psy6093 10 LQCPSSGLKHLQNKSV---FELGVRK---IVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83 (350)
Q Consensus 10 ~~~lHs~l~~~~q~~v---f~~g~rk---vIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~ 83 (350)
+..+||.++. +++++ |+.|..+ |+++|+++++|+++|++.+||. |++ +-|...+.
T Consensus 474 ~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~--------~~~----------~~s~~~~~ 534 (590)
T 3h1t_A 474 VARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVL--------ARV----------VNSMSEFK 534 (590)
T ss_dssp EEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE--------ESC----------CCCHHHHH
T ss_pred EEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEE--------Eec----------CCChHHHH
Confidence 4556888764 45555 4454433 8889999999999999999995 433 24678899
Q ss_pred hhhccCCCCCC
Q psy6093 84 QRRGRAGRVQE 94 (350)
Q Consensus 84 QR~GRaGR~~~ 94 (350)
||.||+||.++
T Consensus 535 Q~iGR~~R~~~ 545 (590)
T 3h1t_A 535 QIVGRGTRLRE 545 (590)
T ss_dssp HHHTTSCCCBG
T ss_pred HHHhhhcccCc
Confidence 99999999886
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.03 E-value=2.9e-06 Score=84.72 Aligned_cols=80 Identities=19% Similarity=0.139 Sum_probs=59.2
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CC--CceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhh
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LG--VRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLAN 81 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g--~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~ 81 (350)
++.+..+||+++.++|+++.+ .+ .+.+++||.+++.|++++++.+||. ||+. -+.+.
T Consensus 366 ~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~--------~d~~----------~~~~~ 427 (500)
T 1z63_A 366 NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH--------FDRW----------WNPAV 427 (500)
T ss_dssp TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEE--------SSCC----------SCC--
T ss_pred CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEE--------eCCC----------CCcch
Confidence 556677899999999988854 33 4458999999999999999999996 4443 34556
Q ss_pred HHhhhccCCCCC---CceEEEccccc
Q psy6093 82 AKQRRGRAGRVQ---EGVCYHLYSRA 104 (350)
Q Consensus 82 ~~QR~GRaGR~~---~G~c~rLyt~~ 104 (350)
..||.||++|.+ +..+|++.++.
T Consensus 428 ~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 428 EDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp -CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred HHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 789999999976 44578888764
No 68
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=97.93 E-value=8e-06 Score=86.96 Aligned_cols=78 Identities=22% Similarity=0.162 Sum_probs=61.0
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCCceEEEecCccccCCCCCCc----------------------------------
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGVRKIVLATNIAETSITIDDI---------------------------------- 49 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~rkvIlaTniaEtsvtip~v---------------------------------- 49 (350)
++....|||.....++..+-+ +| +|.||||+|..|++|+.+
T Consensus 484 Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (922)
T 1nkt_A 484 RIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELP 561 (922)
T ss_dssp TCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHH
T ss_pred CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 677778899987666665544 44 799999999999999975
Q ss_pred ------------------cEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccCCCCC-CceEEEccccc
Q psy6093 50 ------------------VYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRVQ-EGVCYHLYSRA 104 (350)
Q Consensus 50 ------------------~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~-~G~c~rLyt~~ 104 (350)
.|||++- .+-|+..+.||+||+||.+ ||.+.-+.+.+
T Consensus 562 ~~~~~~~~~~~~V~~~GGlhVI~te------------------~pes~riy~qr~GRTGRqGdpG~s~fflSle 617 (922)
T 1nkt_A 562 IVKEEASKEAKEVIEAGGLYVLGTE------------------RHESRRIDNQLRGRSGRQGDPGESRFYLSLG 617 (922)
T ss_dssp HHHHHTTHHHHHHHHTTSEEEEECS------------------CCSSHHHHHHHHHTSSGGGCCEEEEEEEETT
T ss_pred HHHHHHHHhhhHHHhcCCcEEEecc------------------CCCCHHHHHHHhcccccCCCCeeEEEEechh
Confidence 4888732 2457778999999999987 89987776654
No 69
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.78 E-value=2.8e-05 Score=80.75 Aligned_cols=80 Identities=16% Similarity=0.101 Sum_probs=64.3
Q ss_pred ceeeeccCCCCCHHHHHHhcc---CCC---ceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHh
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---LGV---RKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLA 80 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~g~---rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka 80 (350)
++....+||+++.++|+++.+ .+. ..+++||.+++.|++++++.+||. ||+ |-+.+
T Consensus 440 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~--------~d~----------~wnp~ 501 (644)
T 1z3i_X 440 RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM--------FDP----------DWNPA 501 (644)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE--------CSC----------CSSHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEE--------ECC----------CCCcc
Confidence 566777899999999988854 432 358999999999999999999996 554 34677
Q ss_pred hHHhhhccCCCCC---CceEEEccccc
Q psy6093 81 NAKQRRGRAGRVQ---EGVCYHLYSRA 104 (350)
Q Consensus 81 ~~~QR~GRaGR~~---~G~c~rLyt~~ 104 (350)
...||.||++|.+ +..+|++.++.
T Consensus 502 ~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 502 NDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp HHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred HHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 8899999999876 45688888764
No 70
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.62 E-value=4.5e-05 Score=81.13 Aligned_cols=81 Identities=20% Similarity=0.129 Sum_probs=65.2
Q ss_pred ceeeeccCCCCCHHHHHHhcc---C---CCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHh
Q psy6093 7 IWFLQCPSSGLKHLQNKSVFE---L---GVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLA 80 (350)
Q Consensus 7 ~~~~~~lHs~l~~~~q~~vf~---~---g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka 80 (350)
++....+||+++.++|+++++ . +...+++||.+++.|++++++.+||- ||+. -+.+
T Consensus 596 g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~--------~D~~----------wnp~ 657 (800)
T 3mwy_W 596 GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVI--------FDSD----------WNPQ 657 (800)
T ss_dssp TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEE--------SSCC----------SCSH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEE--------ecCC----------CChh
Confidence 667778899999999998854 2 33469999999999999999999995 5443 3556
Q ss_pred hHHhhhccCCCCC---CceEEEcccccc
Q psy6093 81 NAKQRRGRAGRVQ---EGVCYHLYSRAR 105 (350)
Q Consensus 81 ~~~QR~GRaGR~~---~G~c~rLyt~~~ 105 (350)
...||.||++|.+ +...|+|+++..
T Consensus 658 ~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 658 ADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp HHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred hHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 7889999999965 677899988754
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=95.47 E-value=0.012 Score=64.33 Aligned_cols=51 Identities=10% Similarity=0.095 Sum_probs=40.7
Q ss_pred ccCCCceEEEecCccccCCCCCCccEEEeCCCcceeeeecCCCccccccccccHhhHHhhhccCCCCCCc
Q psy6093 26 FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRVQEG 95 (350)
Q Consensus 26 f~~g~rkvIlaTniaEtsvtip~v~~VID~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G 95 (350)
|+.|..+|+|+|+++.+|+++|.+.++. +|. +.+...+.||.||+||..+|
T Consensus 645 Fk~g~i~ILIvvd~lltGfDiP~l~tly---------lDk----------pl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 645 VKNQDIDLLIVVGMFLTGFDAPTLNTLF---------VDK----------NLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp HHTTSSSEEEESSTTSSSCCCTTEEEEE---------EES----------CCCHHHHHHHHHTTCCCCCT
T ss_pred HHcCCCeEEEEcchHHhCcCcccccEEE---------Ecc----------CCCccceeehhhccCcCCCC
Confidence 4578899999999999999999995443 332 34556789999999998864
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=72.92 E-value=1.8 Score=46.49 Aligned_cols=31 Identities=32% Similarity=0.324 Sum_probs=23.2
Q ss_pred CCccccccc-cccHhhHHhhhccCCCCC-CceE
Q psy6093 67 DNIATLKPE-WISLANAKQRRGRAGRVQ-EGVC 97 (350)
Q Consensus 67 ~~~~~l~~~-~iSka~~~QR~GRaGR~~-~G~c 97 (350)
+|+..+.+. .-|+--=.|-+|||||.+ ||.+
T Consensus 659 GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsS 691 (997)
T 2ipc_A 659 GGLFIIGTERHESRRIDNQLRGRAGRQGDPGGS 691 (997)
T ss_dssp CCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEE
T ss_pred CCeEEEeccCCchHHHHHHHhcccccCCCCCCe
Confidence 555555443 567777889999999998 8864
No 73
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=44.33 E-value=10 Score=35.32 Aligned_cols=36 Identities=8% Similarity=-0.015 Sum_probs=27.8
Q ss_pred HccCCCC--CCCHHHhhhccCCCchhHHHHHHHhhhcC
Q psy6093 179 DALDDDE--HLTPLGYHLAKLPLDPQIGKMLLMASIFS 214 (350)
Q Consensus 179 gald~~~--~LT~lG~~ls~Lpldp~~ak~ll~~~~~~ 214 (350)
|++++++ ..|++|+.+|.++|++...+.+.....-+
T Consensus 1 ~~~~~~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~ 38 (328)
T 3im1_A 1 GAMEATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNT 38 (328)
T ss_dssp ---CCCCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTT
T ss_pred CCccCCCCccCCchhHHHHHHCCCHHHHHHHHHHhccc
Confidence 5677666 67899999999999999999999776543
No 74
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=31.27 E-value=26 Score=29.00 Aligned_cols=35 Identities=11% Similarity=0.023 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHHHHccCCC--C--CCCHHHhhhc
Q psy6093 161 DPPDPASVQLSLKLLRLIDALDDD--E--HLTPLGYHLA 195 (350)
Q Consensus 161 ~pP~~~~i~~al~~L~~lgald~~--~--~LT~lG~~ls 195 (350)
..-+...+..+++.|+.+|.++.+ + .||+-|+...
T Consensus 94 ~~asg~iiR~~LQqLE~~g~vek~~~~GR~lT~~G~~~L 132 (144)
T 3u5c_T 94 IDASGSINRKVLQALEKIGIVEISPKGGRRISENGQRDL 132 (144)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEECCSSSSCEECHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHCCCeeecCCCCcEECHhHHHHH
Confidence 344667899999999999999864 2 7999998753
No 75
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=28.95 E-value=75 Score=34.35 Aligned_cols=53 Identities=9% Similarity=0.221 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCHHHhhhccCCC--chhHHHHHHHhhhcCChhH
Q psy6093 165 PASVQLSLKLLRLIDALDDDEHLTPLGYHLAKLPL--DPQIGKMLLMASIFSCVDP 218 (350)
Q Consensus 165 ~~~i~~al~~L~~lgald~~~~LT~lG~~ls~Lpl--dp~~ak~ll~~~~~~C~~~ 218 (350)
...+..-++.|.++|.||+++.+|..|+..+++.- +..++-+|..+. |+-++|
T Consensus 816 ~~~~~~~~~vL~~l~~~~~~~~v~~kGr~a~~i~~~~el~~~e~~~~g~-~~~l~p 870 (1010)
T 2xgj_A 816 LDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGN-FNELKP 870 (1010)
T ss_dssp HHHHHHHHHHHHHHTSBCTTCCBCHHHHHHHTCCSSCHHHHHHHHHHTT-TTTCCH
T ss_pred HHHHHHHHHHHHhcCCcCCCCcccHHHHHHHHhcCccHHHHHHHHHcCc-cCCCCH
Confidence 35577888899999999998999999999999987 477777777775 444444
No 76
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=28.66 E-value=24 Score=29.31 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHHHHccCCC--C--CCCHHHhhhc
Q psy6093 161 DPPDPASVQLSLKLLRLIDALDDD--E--HLTPLGYHLA 195 (350)
Q Consensus 161 ~pP~~~~i~~al~~L~~lgald~~--~--~LT~lG~~ls 195 (350)
..-+...+..+++.|+.+|.++.+ + .||+-|+...
T Consensus 96 ~~asg~iiR~~LQqLE~~g~Vek~~~gGR~lT~~G~~~L 134 (146)
T 3iz6_S 96 CKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDL 134 (146)
T ss_dssp CCCCHHHHHHHHHHHHHHTSEEEETTTEEEECHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHCCCeEecCCCCcEECHhHHHHH
Confidence 344567899999999999999764 3 8999998753
No 77
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=25.56 E-value=26 Score=34.91 Aligned_cols=72 Identities=17% Similarity=0.095 Sum_probs=34.1
Q ss_pred ccCCCceEEE--ecCccccCCCCCC----ccEEEeCCCcceeeeecCC-------------CccccccccccHhhHHhhh
Q psy6093 26 FELGVRKIVL--ATNIAETSITIDD----IVYVVDCGKTKMSNFDVKD-------------NIATLKPEWISLANAKQRR 86 (350)
Q Consensus 26 f~~g~rkvIl--aTniaEtsvtip~----v~~VID~G~~k~~~yd~~~-------------~~~~l~~~~iSka~~~QR~ 86 (350)
|+.+ ..|++ +|....-||++|| ++.||..|+.-...-||.. +..... .+..--...|-.
T Consensus 425 f~~~-~~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Q~~ 502 (540)
T 2vl7_A 425 MKTG-KYLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSII-HDLTAIVIKQTI 502 (540)
T ss_dssp HHTS-CCEEEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHHHHH
T ss_pred HhcC-CeEEEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHH-HHHHHHHHHHHh
Confidence 5443 35777 8899999999998 8999988887544433321 111000 111145678999
Q ss_pred ccCCCCC--CceEEE
Q psy6093 87 GRAGRVQ--EGVCYH 99 (350)
Q Consensus 87 GRaGR~~--~G~c~r 99 (350)
||+-|.. -|..+-
T Consensus 503 GR~iR~~~D~g~v~l 517 (540)
T 2vl7_A 503 GRAFRDPNDYVKIYL 517 (540)
T ss_dssp HHHCCSTTCCCEEEE
T ss_pred CCcccCCCccEEEEE
Confidence 9999975 465443
No 78
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=25.38 E-value=69 Score=35.00 Aligned_cols=50 Identities=10% Similarity=0.248 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHccCCCCCCCHHHhhhccCCC--chhHHHHHHHhhhcCChhH
Q psy6093 168 VQLSLKLLRLIDALDDDEHLTPLGYHLAKLPL--DPQIGKMLLMASIFSCVDP 218 (350)
Q Consensus 168 i~~al~~L~~lgald~~~~LT~lG~~ls~Lpl--dp~~ak~ll~~~~~~C~~~ 218 (350)
+..-++.|.++|.||.++.+|..||..+++.- +.-++.+|..+. |+-++|
T Consensus 917 ~~~~~~vL~~l~~~~~~~~v~~kgr~a~~i~~~~el~~~e~~~~~~-~~~l~~ 968 (1108)
T 3l9o_A 917 LRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGN-FNELKP 968 (1108)
T ss_dssp HHHHHHHHHHHTSCTTTCCCSHHHHHHHC-CCTTHHHHHHHHHHHC-CCSSCC
T ss_pred HHHHHHHHHHcCCcCCCCcCcHHhHHHHHhcCccHHHHHHHHHhCc-ccCCCH
Confidence 45556778899999999999999999999974 567777777775 333333
No 79
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=22.37 E-value=28 Score=23.70 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCHH
Q psy6093 166 ASVQLSLKLLRLIDALDDDEHLTPL 190 (350)
Q Consensus 166 ~~i~~al~~L~~lgald~~~~LT~l 190 (350)
..|..|+..+..+|+=++.|-||.+
T Consensus 8 ~rl~~al~qMl~MGF~negGWLt~L 32 (52)
T 1q02_A 8 PRLIESLSQMLSMGFSDEGGWLTRL 32 (52)
T ss_dssp HHHHHHHHHHHTTTCCCTTSHHHHH
T ss_pred hHHHHHHHHHHHcCCCccccHHHHH
Confidence 5699999999999999988877754
No 80
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=21.84 E-value=47 Score=27.79 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHccCCC--C-------CCCHHHhhhc
Q psy6093 163 PDPASVQLSLKLLRLIDALDDD--E-------HLTPLGYHLA 195 (350)
Q Consensus 163 P~~~~i~~al~~L~~lgald~~--~-------~LT~lG~~ls 195 (350)
-+...+..+++.|+.+|.|+.+ | .||+-|+...
T Consensus 99 asg~iiR~~LQqLE~~g~Vek~~~g~~~k~GR~lT~~G~~~L 140 (155)
T 2xzm_T 99 CHGKILRWALKSLEDLKIIRKDKNSATKKFSRVITKEGMTEL 140 (155)
T ss_dssp CCHHHHHHHHHHHHHTTSEEECSSCSSSTTCEEECHHHHHHH
T ss_pred CCcHHHHHHHHHHHHCCCEeecCCCCcCCCCCEECHHHHHHH
Confidence 3667899999999999999743 3 5999988653
Done!