RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6093
(350 letters)
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 104 bits (261), Expect = 1e-26
Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 20/180 (11%)
Query: 31 RKIVLATNIAETSITIDDIVYVVDCGKT-KMSNFDVKDNIATLKPEWISLANAKQRRGRA 89
+LAT+IAE + + V+DC K D +A P IS ++A QRRGR
Sbjct: 83 PDFILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRI 141
Query: 90 GRVQEGV-CYHLYSRAREQTFQDYPLPEIQRTRLDEVVRTLESKKFKMVSRRFKVMLNTA 148
GR + YS E T ++ + ++ +E + MV+ + +
Sbjct: 142 GRNPNRDGDSYYYS---EPTSEN-NAHHVCWLEASMLLDNMEV-RGGMVAPLY--GVEGT 194
Query: 149 FTPYVWVPKQVLDPPDPASVQLSLKLLRLIDALDDDEHLTPLGYHLAKLPLDPQIGKMLL 208
+ + + + + L + +AK L K
Sbjct: 195 K----------TPVSPGEMRLRDDQRKVFRELVRNCDLPVWLSWQVAKAGLKTNDRKWCF 244
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 68.0 bits (165), Expect = 2e-13
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 31 RKIVLATNIAETSITIDDIVYVVDCG--KTKMSNFDVKDNIATLKPEWISLANAKQRRGR 88
V+ T+I+E V+D + D ++ + P ++ ++A QRRGR
Sbjct: 225 WDFVVTTDISEMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGR 283
Query: 89 AGRVQEGVCYHLYSRARE 106
GR +
Sbjct: 284 VGRNPKNENDQYIYMGEP 301
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 40.3 bits (94), Expect = 2e-04
Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 20/94 (21%)
Query: 26 FELGVRKIVLATNIAETSITIDDI--VYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 83
G V+ N T + + ++ + + +
Sbjct: 92 GFTGDFDSVIDCNTCVTQTVDFSLDPTFTIE-------TTTLPQDAVSRT---------- 134
Query: 84 QRRGRAGRVQEGVCYHLYSRAR-EQTFQDYPLPE 116
QRRGR GR + G+ + R F L E
Sbjct: 135 QRRGRTGRGKPGIYRFVAPGERPSGMFDSSVLCE 168
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 34.5 bits (78), Expect = 0.012
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 18/82 (21%)
Query: 26 FELGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQR 85
F G +++AT++ E + + ++ VV ++ + QR
Sbjct: 215 FARGEFNVLVATSVGEEGLDVPEVDLVV--------FYEPVPSAIRSI----------QR 256
Query: 86 RGRAGRVQEGVCYHLYSRAREQ 107
RGR GR G L ++
Sbjct: 257 RGRTGRHMPGRVIILMAKGTRD 278
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 28.7 bits (63), Expect = 0.88
Identities = 9/72 (12%), Positives = 17/72 (23%), Gaps = 3/72 (4%)
Query: 41 ETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRVQ---EGVC 97
+ + + I ++ KQ GRAGR G
Sbjct: 120 NIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEA 179
Query: 98 YHLYSRAREQTF 109
+ + +
Sbjct: 180 IIIVGKRDREIA 191
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 27.8 bits (61), Expect = 1.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 84 QRRGRAGRVQEGVC 97
QRRGR GR + G+
Sbjct: 117 QRRGRTGRGKPGIY 130
>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus
[TaxId: 63363]}
Length = 243
Score = 28.1 bits (62), Expect = 1.6
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 153 VWVPKQVLDPPDPASVQLSLKLLRLIDALDDDE 185
W P + D + Q K+++L++AL++ +
Sbjct: 196 TWKPISTVQINDEETAQ---KVIKLLNALEELD 225
>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel
(Mytilus edulis) [TaxId: 6550]}
Length = 275
Score = 27.1 bits (59), Expect = 3.5
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 220 FTVAASLGFKDAFYCPMIGKMLLMASIFSCVDPVFTVAASLGFKDAFYCPMNM 272
+V+A LG +D+ + ++ + D + A G+ + +
Sbjct: 45 LSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLV 97
>d2olua2 e.3.1.1 (A:293-692) Penicillin-binding protein 2, PBP2
{Staphylococcus aureus [TaxId: 1280]}
Length = 400
Score = 26.7 bits (57), Expect = 4.4
Identities = 14/137 (10%), Positives = 36/137 (26%), Gaps = 1/137 (0%)
Query: 179 DALDDDEHLTPLGYHLAKLPLDPQIGKMLLMASIFSCVDPVFTVAASLGFKDAFYCPMIG 238
+ +D+ + LD + G ++ ++ D V A+
Sbjct: 53 NDVDNGSFYKNKDQQVGATILDSKTGGLVAISGGRDFKDVVNRNQATDPHPTGSSLKPFL 112
Query: 239 KMLLMASIFSCVDPVFTVAASLGFKDAFYCPMNMEKDVDKQKNILAQGAKSDYVVLINAM 298
A + ++ N + +I +S + + A
Sbjct: 113 -AYGPAIENMKWATNHAIQDESSYQVDGSTFRNYDTKSHGTVSIYDALRQSFNIPALKAW 171
Query: 299 QGWEQALEHNYAHDYCR 315
Q +Q ++ +
Sbjct: 172 QSVKQNAGNDAPKKFAA 188
>d1prta_ d.166.1.1 (A:) Pertussis toxin, S1 subunit {Bordetella
pertussis [TaxId: 520]}
Length = 234
Score = 26.5 bits (58), Expect = 4.6
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 68 NIATLKPEWISLANAKQRRGRAGRVQEGVCYHLYSRAREQTFQDYPLPEIQRTR 121
+AT + E+++ RR ++ + E T +Y +
Sbjct: 121 ALATYQSEYLAH-----RRIPPENIRRVTRVYHNGITGETTTTEYSNARYVSQQ 169
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human
immunodeficiency virus type 1 [TaxId: 11676]}
Length = 216
Score = 25.7 bits (56), Expect = 8.9
Identities = 22/141 (15%), Positives = 35/141 (24%), Gaps = 14/141 (9%)
Query: 112 YPLPEIQRTRLDEVVRTLESKKFKMVSRRFKVMLNTAFTPYVWVPKQVLDPPDPASVQLS 171
+PL + L + +E + N TP + K D
Sbjct: 24 WPLTAAKIAALVAICTEMEKEGKI----SKIGPENPYNTPVFAIKK-----KDSTKWAKL 74
Query: 172 LKLLRLIDALDDDEHLTPLGYHLAKLPLDPQIGKMLLMASIFSCVDPVFTVAASLGFKDA 231
+ L D + H A L + + + + FS + A
Sbjct: 75 VDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSV-----PLDEDFRKYTA 129
Query: 232 FYCPMIGKMLLMASIFSCVDP 252
F P I V P
Sbjct: 130 FTIPSINNETPGIRYQYNVLP 150
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.137 0.415
Gapped
Lambda K H
0.267 0.0455 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,297,035
Number of extensions: 58362
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 14
Length of query: 350
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 264
Effective length of database: 1,226,816
Effective search space: 323879424
Effective search space used: 323879424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.9 bits)