BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6094
(455 letters)
Database: pdbaa
65,211 sequences; 15,674,573 total letters
Searching..................................................done
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 68/126 (53%), Gaps = 10/126 (7%)
Query: 189 ILVFLPGWDTINSLHRSMCQSS-----FFNSSRFQIIPLHSMLPTVSQKSIFNTPPEG-- 241
IL+FL G D I R + + PL+ LP Q+ IF PE
Sbjct: 306 ILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHN 365
Query: 242 ---VRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRR 298
RK+V++TNIAETS+TID IVYVVD G +K ++ + + +L IS A+A+QR
Sbjct: 366 GRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRA 425
Query: 299 GRAGRT 304
GRAGRT
Sbjct: 426 GRAGRT 431
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 8 KGLTHSVTSWETRQKLLNDPVLDAAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLD 67
KGL TS E QKL D ++ +E K Y ++L+ R++LP + RD L
Sbjct: 51 KGLQRHHTSAEEAQKL-EDGKINPFTGREFTPK-----YVDILKIRRELPVHAQRDEFLK 104
Query: 68 MVRNNQITVISGETGSG 84
+ +NNQI V GETGSG
Sbjct: 105 LYQNNQIMVFVGETGSG 121
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 68/126 (53%), Gaps = 10/126 (7%)
Query: 189 ILVFLPGWDTINSLHRSMCQSS-----FFNSSRFQIIPLHSMLPTVSQKSIFNTPPEG-- 241
IL+FL G D I R + + PL+ LP Q+ IF PE
Sbjct: 306 ILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHN 365
Query: 242 ---VRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRR 298
RK+V++TNIAETS+TID IVYVVD G +K ++ + + +L IS A+A+QR
Sbjct: 366 GRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRA 425
Query: 299 GRAGRT 304
GRAGRT
Sbjct: 426 GRAGRT 431
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 8 KGLTHSVTSWETRQKLLNDPVLDAAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLD 67
KGL TS E QKL D ++ +E K Y ++L+ R++LP + RD L
Sbjct: 51 KGLQRHHTSAEEAQKL-EDGKINPFTGREFTPK-----YVDILKIRRELPVHAQRDEFLK 104
Query: 68 MVRNNQITVISGETGSG 84
+ +NNQI V GETGSG
Sbjct: 105 LYQNNQIMVFVGETGSG 121
>pdb|2DPG|A Chain A, Complex Of Inactive Mutant (H240->n) Of Glucose
6-Phosphate Dehydrogenase From Leuconostoc Mesenteroides
With Nadp+
Length = 485
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 24 LNDPVLDAAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVIS 78
+P+ DAA+ K+ I+ +Q E+L ++ Y A+LDM++NN + ++
Sbjct: 193 FGNPIFDAAWNKDYIKNVQVT-LSEVLGVEERAGYYDTAGALLDMIQNNTMQIVG 246
>pdb|1YKS|A Chain A, Crystal Structure Of Yellow Fever Virus Ns3 Helicase
Length = 440
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 20/131 (15%)
Query: 188 PILVFLPGWDTINSLHRSMCQSS----FFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVR 243
P FLP N + S+ ++ N F+ PT+ QK P+
Sbjct: 179 PTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFE-----REYPTIKQKK-----PD--- 225
Query: 244 KIVLATNIAETSITIDDIVYVVDCGKT-KMSNFDVKDNIATLKPEWISLANAKQRRGRAG 302
+LAT+IAE + + V+DC K D +A P IS ++A QRRGR G
Sbjct: 226 -FILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIG 283
Query: 303 RTLKRSETQQY 313
R R Y
Sbjct: 284 RNPNRDGDSYY 294
>pdb|1YMF|A Chain A, Crystal Structure Of Yellow Fever Virus Ns3 Helicase
Complexed With Adp
Length = 440
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 52/131 (39%), Gaps = 20/131 (15%)
Query: 188 PILVFLPGWDTIN----SLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVR 243
P FLP N SL ++ N F+ PT+ QK P+
Sbjct: 179 PTAWFLPSIRAANVXAASLRKAGKSVVVLNRKTFE-----REYPTIKQKK-----PD--- 225
Query: 244 KIVLATNIAETSITIDDIVYVVDCGKT-KMSNFDVKDNIATLKPEWISLANAKQRRGRAG 302
+LAT+IAE + + V+DC K D +A P IS ++A QRRGR G
Sbjct: 226 -FILATDIAEXGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIG 283
Query: 303 RTLKRSETQQY 313
R R Y
Sbjct: 284 RNPNRDGDSYY 294
>pdb|1E77|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides With
Substrate
pdb|1H9A|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From L. Mesenteroides With Coenzyme Nadp
pdb|1H9B|A Chain A, Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
Length = 485
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 24 LNDPVLDAAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVIS 78
+P+ DAA+ K+ I+ +Q E+L ++ Y A+LDM++N+ + ++
Sbjct: 193 FGNPIFDAAWNKDYIKNVQV-TLSEVLGVEERAGYYDTAGALLDMIQNHTMQIVG 246
>pdb|1DPG|A Chain A, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
pdb|1DPG|B Chain B, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
Length = 485
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 24 LNDPVLDAAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVIS 78
+P+ DAA+ K+ I+ +Q E+L ++ Y A+LDM++N+ + ++
Sbjct: 193 FGNPIFDAAWNKDYIKNVQV-TLSEVLGVEERAGYYDTAGALLDMIQNHTMQIVG 246
>pdb|1E7M|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides Complexed
With Substrate And Nadph
Length = 485
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 24 LNDPVLDAAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVIS 78
+P+ DAA+ K+ I+ +Q E+L ++ Y A+LDM++N+ + ++
Sbjct: 193 FGNPIFDAAWNKDYIKNVQV-TLSEVLGVEERAGYYDTAGALLDMIQNHTMQIVG 246
>pdb|1H93|A Chain A, Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1H94|A Chain A, Complex Of Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From L.Mesenteroides With Coenzyme Nad
Length = 485
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 24 LNDPVLDAAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVIS 78
+P+ DAA+ K+ I+ +Q E+L ++ Y A+LDM++N+ + ++
Sbjct: 193 FGNPIFDAAWNKDYIKNVQV-TLCEVLGVEERAGYYDTAGALLDMIQNHTMQIVG 246
>pdb|1NKT|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis Complex With Adpbs
pdb|1NKT|B Chain B, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis Complex With Adpbs
pdb|1NL3|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis In Apo Form
pdb|1NL3|B Chain B, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis In Apo Form
Length = 922
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 4 PHSPKGLTHSVTSWETRQKLLNDPVLDAAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRD 63
P K +T ++ S +T+ + N V K + + + +R E R+ L ++D
Sbjct: 643 PIEAKMVTRAIKSAQTQVEQQNFEVRKNVLKYDEV--MNQQRKVIYAERRRILEGENLKD 700
Query: 64 AVLDMVRNNQITVISGETGSGPPLHLDFITLKRSETQQYP 103
LDMVR+ + G TG G D L + YP
Sbjct: 701 QALDMVRDVITAYVDGATGEGYAEDWDLDALWTALKTLYP 740
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 255 SITIDDIVYVVDC--GKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRT 304
S+++ D +YV+ G++++S+ + D A W S+A RRG AG T
Sbjct: 58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT 109
>pdb|2GEB|A Chain A, Crystal Structure Of The Thermoanaerobacter Tengcongensis
Hypoxanthine-Guanine Phosphoribosyltransferase L160i
Mutant: Insights Into The Inhibitor Design
Length = 185
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 58 SYQMRDAVLDMVRNNQITVISGETGS-GPPLHLDFITLKRSETQQYPNDVLNMLKDPELE 116
Y+ +D VL V I +SG + + PL +DF+ + + + ++ ++KD +++
Sbjct: 36 DYEGKDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGSSTKSSGIVKIIKDHDID 95
Query: 117 GVNNDVIFSLLQHICTTQRPGAILVYCTYTFMGVSPMKVFFC 158
DV+ +++ I + G L Y T +G P + C
Sbjct: 96 IEGKDVL--IVEDIIDS---GLTLAYLRETLLGRKPRSLKIC 132
>pdb|1R3U|A Chain A, Crystal Structure Of Hypoxanthine-guanine
Phosphoribosyltransferase From Thermoanaerobacter
Tengcongensis
pdb|1R3U|B Chain B, Crystal Structure Of Hypoxanthine-guanine
Phosphoribosyltransferase From Thermoanaerobacter
Tengcongensis
pdb|1YFZ|A Chain A, Novel Imp Binding In Feedback Inhibition Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Thermoanaerobacter Tengcongensis
pdb|1YFZ|B Chain B, Novel Imp Binding In Feedback Inhibition Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Thermoanaerobacter Tengcongensis
Length = 205
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 58 SYQMRDAVLDMVRNNQITVISGETGS-GPPLHLDFITLKRSETQQYPNDVLNMLKDPELE 116
Y+ +D VL V I +SG + + PL +DF+ + + + ++ ++KD +++
Sbjct: 56 DYEGKDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGSSTKSSGIVKIIKDHDID 115
Query: 117 GVNNDVIFSLLQHICTTQRPGAILVYCTYTFMGVSPMKVFFC 158
DV+ +++ I + G L Y T +G P + C
Sbjct: 116 IEGKDVL--IVEDIIDS---GLTLAYLRETLLGRKPRSLKIC 152
Database: pdbaa
Posted date: Jul 29, 2013 4:35 PM
Number of letters in database: 15,674,573
Number of sequences in database: 65,211
Lambda K H
0.321 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,684,988
Number of Sequences: 65211
Number of extensions: 530755
Number of successful extensions: 1189
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1180
Number of HSP's gapped (non-prelim): 18
length of query: 455
length of database: 15,674,573
effective HSP length: 102
effective length of query: 353
effective length of database: 9,023,051
effective search space: 3185137003
effective search space used: 3185137003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)