BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6094
(455 letters)
Database: swissprot
455,621 sequences; 169,969,125 total letters
Searching..................................................done
>gi|408360071|sp|Q8VHK9.2|DHX36_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DHX36; AltName:
Full=DEAH box protein 36; AltName: Full=MLE-like protein
1; AltName: Full=RNA helicase associated with AU-rich
element ARE
Length = 1001
Score = 161 bits (407), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 111/169 (65%), Gaps = 7/169 (4%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
ILVFLPGWD I++LH + F S +F IIPLHS++PTV+Q +F P GVRKIV+A
Sbjct: 484 ILVFLPGWDNISTLHDLLMSQVMFKSDKFLIIPLHSLMPTVNQTQVFKKTPPGVRKIVIA 543
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRS 308
TNIAETSITIDD+VYV+D GK K ++FD ++NI+T+ EW+S ANAKQR+GRAGR
Sbjct: 544 TNIAETSITIDDVVYVIDGGKIKETHFDTQNNISTMSAEWVSKANAKQRKGRAGRVQPGH 603
Query: 309 ETQQYPNDVLNMLKDPELEGVNNDVIFSLLQHIC---TTQRPGAILVFL 354
Y ++L D +L +++ + L+ +C R G I FL
Sbjct: 604 CYHLYNGLRASLLDDYQLP----EILRTPLEELCLQIKILRLGGIAYFL 648
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 25 NDP--VLDAAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETG 82
N+P LD +++ RK RY EM RKKLPSY M+ +++++ N+Q+TVISGETG
Sbjct: 167 NEPNLSLDQHLLEDLQRKKTDPRYIEMQRFRKKLPSYGMQKELVNLINNHQVTVISGETG 226
Query: 83 SG 84
G
Sbjct: 227 CG 228
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 316 DVLNMLKDPELEGVNNDVIFSLLQHICTTQRPGAILVFLPGWDTINSLHRSMCQSSFFNS 375
DVL M+ D + V+ ++I +L+++I + GAILVFLPGWD I++LH + F S
Sbjct: 453 DVLQMMDD---DKVDLNLIAALIRYIVLEEEDGAILVFLPGWDNISTLHDLLMSQVMFKS 509
>gi|313104099|sp|Q9H2U1.2|DHX36_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DHX36; AltName:
Full=DEAH box protein 36; AltName: Full=MLE-like protein
1; AltName: Full=RNA helicase associated with AU-rich
element ARE
Length = 1008
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 111/169 (65%), Gaps = 7/169 (4%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
ILVFLPGWD I++LH + F S +F IIPLHS++PTV+Q +F P GVRKIV+A
Sbjct: 491 ILVFLPGWDNISTLHDLLMSQVMFKSDKFLIIPLHSLMPTVNQTQVFKRTPPGVRKIVIA 550
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRS 308
TNIAETSITIDD+VYV+D GK K ++FD ++NI+T+ EW+S ANAKQR+GRAGR
Sbjct: 551 TNIAETSITIDDVVYVIDGGKIKETHFDTQNNISTMSAEWVSKANAKQRKGRAGRVQPGH 610
Query: 309 ETQQYPNDVLNMLKDPELEGVNNDVIFSLLQHIC---TTQRPGAILVFL 354
Y ++L D +L +++ + L+ +C R G I FL
Sbjct: 611 CYHLYNGLRASLLDDYQLP----EILRTPLEELCLQIKILRLGGIAYFL 655
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 26 DPVLDAAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
D LD +++ +K RY EM R+KLPSY M+ +++++ N+Q+TVISGETG G
Sbjct: 177 DGTLDQKLLEDLQKKKNDLRYIEMQHFREKLPSYGMQKELVNLIDNHQVTVISGETGCG 235
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 316 DVLNMLKDPELEGVNNDVIFSLLQHICTTQRPGAILVFLPGWDTINSLHRSMCQSSFFNS 375
DV+ M++D + V+ ++I +L+++I + GAILVFLPGWD I++LH + F S
Sbjct: 460 DVIEMMED---DKVDLNLIVALIRYIVLEEEDGAILVFLPGWDNISTLHDLLMSQVMFKS 516
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 376 CLLY---EFAMVDNKPKEIITVRDCLSFECKPSTAKIIKELRARLDMLLAHKLSHPGTTA 432
CLL+ + ++ + +E I V + + F+ A ++KELR LD+LL K+ P
Sbjct: 909 CLLFFGGDISIQKDNDQETIAVDEWIVFQSPARIAHLVKELRKELDILLQEKIESPHPVD 968
Query: 433 WGD 435
W D
Sbjct: 969 WND 971
>gi|74758997|sp|Q7L2E3.1|DHX30_HUMAN RecName: Full=Putative ATP-dependent RNA helicase DHX30; AltName:
Full=DEAH box protein 30
Length = 1194
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 82/115 (71%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
IL FLPGW I + + + ++ + S++ I+P+HS +P + QK+IF PP GVRKIVLA
Sbjct: 671 ILCFLPGWQEIKGVQQRLQEALGMHESKYLILPVHSNIPMMDQKAIFQQPPVGVRKIVLA 730
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
TNIAETSITI+DIV+VVD G K +D+K ++ L+ W+S AN QRRGRAGR
Sbjct: 731 TNIAETSITINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGR 785
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 332 DVIFSLLQHICTTQRPGAILVFLPGWDTINSLHRSMCQS 370
D++ L+ HI PG IL FLPGW I + + + ++
Sbjct: 653 DLVTDLVLHIDARGEPGGILCFLPGWQEIKGVQQRLQEA 691
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 24 LNDPVLDAAF----KKEMIRKLQS-----RRYQEMLEARKKLPSYQMRDAVLDMVRNNQI 74
L+DP+ + + E +R QS RR + + +LP RD +L+ + + +
Sbjct: 393 LSDPITGKPYVPLLEAEEVRLSQSLLELWRRRGPVWQEAPQLPVDPHRDTILNAIEQHPV 452
Query: 75 TVISGETGSGPPLHLDFITLKRSETQ 100
VISG+TG G + + L+R T+
Sbjct: 453 VVISGDTGCGKTTRIPQLLLERYVTE 478
>gi|110278939|sp|Q2NKY8.1|DHX30_BOVIN RecName: Full=Putative ATP-dependent RNA helicase DHX30; AltName:
Full=DEAH box protein 30
Length = 1220
Score = 129 bits (325), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 82/115 (71%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
IL FLPGW I + + + ++ + S++ I+P+HS +P + QK+IF PP GVRKIVLA
Sbjct: 697 ILCFLPGWQEIKGVQQRLQEALGMHESKYLILPVHSNIPMMDQKAIFQQPPIGVRKIVLA 756
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
TNIAETSITI+DIV+VVD G K +D+K ++ L+ W+S AN QRRGRAGR
Sbjct: 757 TNIAETSITINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGR 811
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 311 QQYPNDVLNMLKDPELEGVNNDVIFSLLQHICTTQRPGAILVFLPGWDTINSLHRSMCQS 370
QYP+ + + E ++ D++ L+ HI PG IL FLPGW I + + + ++
Sbjct: 659 HQYPHRHRHHESEDEC-ALDLDLVTDLVLHIDARGEPGGILCFLPGWQEIKGVQQRLQEA 717
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 24 LNDPVLDAAF----KKEMIRKLQS-----RRYQEMLEARKKLPSYQMRDAVLDMVRNNQI 74
L+DP+ + + E +R QS RR + + +LP RD +L+ + + +
Sbjct: 419 LSDPITGKPYVPLSEAEELRLSQSLLELWRRRGPVWQEAPQLPVDPHRDTILNAIEQHPV 478
Query: 75 TVISGETGSGPPLHLDFITLKRSETQ 100
VI+G+TG G + + L+R T+
Sbjct: 479 VVIAGDTGCGKTTRIPQLLLERYVTE 504
>gi|81909465|sp|Q5BJS0.1|DHX30_RAT RecName: Full=Putative ATP-dependent RNA helicase DHX30; AltName:
Full=DEAH box protein 30
Length = 1194
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 82/115 (71%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
IL FLPGW I + + + ++ + S++ I+P+HS +P + QK+IF PP GVRKIVLA
Sbjct: 671 ILCFLPGWQEIKGVQQRLQEALGMHESKYLILPVHSNIPMMDQKAIFQQPPLGVRKIVLA 730
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
TNIAETSIT++DIV+VVD G K +D+K ++ L+ W+S AN QRRGRAGR
Sbjct: 731 TNIAETSITVNDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGR 785
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 311 QQYPNDVLNMLKDPELEGVNNDVIFSLLQHICTTQRPGAILVFLPGWDTINSLHRSMCQS 370
QYP+ + + E ++ D++ L+ HI PG IL FLPGW I + + + ++
Sbjct: 633 HQYPHRHRHHESEDEC-ALDLDLVTDLVLHIDARGEPGGILCFLPGWQEIKGVQQRLQEA 691
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 24 LNDPVLDAAF----KKEMIRKLQS-----RRYQEMLEARKKLPSYQMRDAVLDMVRNNQI 74
L+DP+ + + E +R QS RR + + +LP RD +L + + +
Sbjct: 393 LSDPITGKPYMPLSEAEEVRLSQSLLELWRRRGPIWQEAPQLPVDPHRDTILSAIEQHPV 452
Query: 75 TVISGETGSGPPLHLDFITLKRSETQ 100
VISG+TG G + + L+R T+
Sbjct: 453 VVISGDTGCGKTTRIPQLLLERYVTE 478
>gi|81916736|sp|Q99PU8.1|DHX30_MOUSE RecName: Full=Putative ATP-dependent RNA helicase DHX30; AltName:
Full=DEAH box protein 30
Length = 1217
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 82/115 (71%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
IL FLPGW I + + + ++ + S++ I+P+HS +P + QK+IF PP GVRKIVLA
Sbjct: 694 ILCFLPGWQEIKGVQQRLQEALGMHESKYLILPVHSNIPMMDQKAIFQQPPLGVRKIVLA 753
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
TNIAETSIT++DIV+VVD G K +D+K ++ L+ W+S AN QRRGRAGR
Sbjct: 754 TNIAETSITVNDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGR 808
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 311 QQYPNDVLNMLKDPELEGVNNDVIFSLLQHICTTQRPGAILVFLPGWDTINSLHRSMCQS 370
QYP+ + + E ++ D++ L+ HI PG IL FLPGW I + + + ++
Sbjct: 656 HQYPHRHRHHESEDEC-ALDLDLVTDLVLHIDARGEPGGILCFLPGWQEIKGVQQRLQEA 714
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 24 LNDPVLDAAF----KKEMIRKLQS-----RRYQEMLEARKKLPSYQMRDAVLDMVRNNQI 74
L+DP+ + + E +R QS RR + + +LP RD +L + + +
Sbjct: 416 LSDPITGKPYMPLSEAEEVRLSQSLLELWRRRGPIWQEAPQLPVDPHRDTILSAIEQHPV 475
Query: 75 TVISGETGSGPPLHLDFITLKRSETQ 100
VISG+TG G + + L+R T+
Sbjct: 476 VVISGDTGCGKTTRIPQLLLERYVTE 501
>gi|75070502|sp|Q5R607.1|DHX30_PONAB RecName: Full=Putative ATP-dependent RNA helicase DHX30; AltName:
Full=DEAH box protein 30
Length = 1194
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 81/115 (70%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
IL FLPGW I + + + ++ + S++ I+P+HS +P + QK+IF PP GVRKIVLA
Sbjct: 671 ILCFLPGWQEIKGVQQRLQEALGMHESKYLILPVHSNIPMMDQKAIFQQPPVGVRKIVLA 730
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
TNIAETS TI+DIV+VVD G K +D+K ++ L+ W+S AN QRRGRAGR
Sbjct: 731 TNIAETSTTINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGR 785
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 332 DVIFSLLQHICTTQRPGAILVFLPGWDTINSLHRSMCQS 370
D++ L+ HI PG IL FLPGW I + + + ++
Sbjct: 653 DLVTDLVLHIDARGEPGGILCFLPGWQEIKGVQQRLQEA 691
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 24 LNDPVLDAAF----KKEMIRKLQS-----RRYQEMLEARKKLPSYQMRDAVLDMVRNNQI 74
L+DP+ + + E +R QS RR + + +LP RD +L+ + + +
Sbjct: 393 LSDPITGKPYVPLLEAEEVRLSQSLLELWRRRGPVWQEAPQLPVDPHRDTILNAIEQHPV 452
Query: 75 TVISGETGSGPPLHLDFITLKRSETQ 100
VISG+TG G + + L+R T+
Sbjct: 453 VVISGDTGCGKTTRIPQLLLERYVTE 478
>gi|82233708|sp|Q5ZI74.1|DHX30_CHICK RecName: Full=Putative ATP-dependent RNA helicase DHX30; AltName:
Full=DEAH box protein 30
Length = 1231
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 86/133 (64%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
IL FLPGW I + + + + +SR+ ++P+HS +P + Q++IF PP GVRKIVLA
Sbjct: 714 ILCFLPGWQEIKGVQQRLLEMLGSQNSRYLVLPVHSNIPMMDQQNIFQRPPPGVRKIVLA 773
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRS 308
TNIAETSITI+DIV+VVD G K +D+K ++ L+ W+S +N QRRGRAGR
Sbjct: 774 TNIAETSITINDIVHVVDSGTHKEERYDLKTKVSCLETVWVSKSNVVQRRGRAGRCQSGF 833
Query: 309 ETQQYPNDVLNML 321
+P L+ +
Sbjct: 834 AYHLFPRSRLDKM 846
>gi|71153505|sp|O70133.2|DHX9_MOUSE RecName: Full=ATP-dependent RNA helicase A; Short=RHA; AltName:
Full=DEAH box protein 9; Short=mHEL-5; AltName:
Full=Nuclear DNA helicase II; Short=NDH II
Length = 1380
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 80/115 (69%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
+LVFLPGW+ I ++ + + +S F S R+QI+PLHS +P Q+ +F+ P+GV K++L+
Sbjct: 655 VLVFLPGWNLIYTMQKHLENNSHFGSHRYQILPLHSQIPREEQRKVFDPVPDGVTKVILS 714
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
TNIAETSITI+D+VYV+D K K+ F +N+ W S N +QR+GRAGR
Sbjct: 715 TNIAETSITINDVVYVIDSCKQKVKLFTAHNNMTNYATVWASKTNLEQRKGRAGR 769
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 332 DVIFSLLQHICTTQRPGAILVFLPGWDTINSLHRSMCQSSFFNS 375
++I +LL++I T PGA+LVFLPGW+ I ++ + + +S F S
Sbjct: 637 ELIEALLKYIETLNVPGAVLVFLPGWNLIYTMQKHLENNSHFGS 680
>gi|2500541|sp|Q28141.1|DHX9_BOVIN RecName: Full=ATP-dependent RNA helicase A; Short=RHA; AltName:
Full=DEAH box protein 9; AltName: Full=Nuclear DNA
helicase II; Short=NDH II
Length = 1287
Score = 122 bits (305), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 78/115 (67%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
+LVFLPGW+ I ++ + + + F S R+QI+PLHS +P Q+ +F+ P GV KI+L+
Sbjct: 650 VLVFLPGWNLIYTMQKHLEMNPHFGSHRYQILPLHSQIPREEQRKVFDPVPSGVTKIILS 709
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
TNIAETSITI+D+VYV+D K K+ F +N+ W S N +QR+GRAGR
Sbjct: 710 TNIAETSITINDVVYVIDSCKQKVKLFTAHNNMTNYATVWASKTNLEQRKGRAGR 764
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 332 DVIFSLLQHICTTQRPGAILVFLPGWDTINSLHRSMCQSSFFNS 375
++I +LL +I T PGA+LVFLPGW+ I ++ + + + F S
Sbjct: 632 ELIEALLLYIETLNVPGAVLVFLPGWNLIYTMQKHLEMNPHFGS 675
>gi|71153339|sp|Q5R874.1|DHX9_PONAB RecName: Full=ATP-dependent RNA helicase A; Short=RHA; AltName:
Full=DEAH box protein 9; AltName: Full=Nuclear DNA
helicase II; Short=NDH II
Length = 1269
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 78/115 (67%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
+LVFLPGW+ I ++ + + + F S R+QI+PLHS +P Q+ +F+ P GV K++L+
Sbjct: 653 VLVFLPGWNLIYTMQKHLEMNPHFGSHRYQILPLHSQIPREEQRKVFDPVPVGVTKVILS 712
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
TNIAETSITI+D+VYV+D K K+ F +N+ W S N +QR+GRAGR
Sbjct: 713 TNIAETSITINDVVYVIDSCKQKVKLFTAHNNMTNYATVWASKTNLEQRKGRAGR 767
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 332 DVIFSLLQHICTTQRPGAILVFLPGWDTINSLHRSMCQSSFFNS 375
++I +LL++I T PGA+LVFLPGW+ I ++ + + + F S
Sbjct: 635 ELIEALLKYIETLNVPGAVLVFLPGWNLIYTMQKHLEMNPHFGS 678
>gi|116241330|sp|Q08211.4|DHX9_HUMAN RecName: Full=ATP-dependent RNA helicase A; Short=RHA; AltName:
Full=DEAH box protein 9; AltName: Full=Leukophysin;
Short=LKP; AltName: Full=Nuclear DNA helicase II;
Short=NDH II
Length = 1270
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 78/115 (67%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
+LVFLPGW+ I ++ + + + F S R+QI+PLHS +P Q+ +F+ P GV K++L+
Sbjct: 653 VLVFLPGWNLIYTMQKHLEMNPHFGSHRYQILPLHSQIPREEQRKVFDPVPVGVTKVILS 712
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
TNIAETSITI+D+VYV+D K K+ F +N+ W S N +QR+GRAGR
Sbjct: 713 TNIAETSITINDVVYVIDSCKQKVKLFTAHNNMTNYATVWASKTNLEQRKGRAGR 767
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 332 DVIFSLLQHICTTQRPGAILVFLPGWDTINSLHRSMCQSSFFNS 375
++I +LL++I T PGA+LVFLPGW+ I ++ + + + F S
Sbjct: 635 ELIEALLKYIETLNVPGAVLVFLPGWNLIYTMQKHLEMNPHFGS 678
>gi|94710252|sp|Q6P158.2|DHX57_HUMAN RecName: Full=Putative ATP-dependent RNA helicase DHX57; AltName:
Full=DEAH box protein 57
Length = 1386
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 80/118 (67%), Gaps = 3/118 (2%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFN---SSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKI 245
ILVFLPG I L+ + +S FN S+R I PLHS L + Q+++F PP GV KI
Sbjct: 850 ILVFLPGLAEIKMLYEQLQSNSLFNNRRSNRCVIHPLHSSLSSEEQQAVFVKPPAGVTKI 909
Query: 246 VLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
+++TNIAETSITIDD+VYV+D GK K +D + +L+ ++S ANA QR+GRAGR
Sbjct: 910 IISTNIAETSITIDDVVYVIDSGKMKEKRYDASKGMESLEDTFVSQANALQRKGRAGR 967
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 36/50 (72%)
Query: 35 KEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
K+ K SR++Q +L+ R+ LP+++ R+ +L+++R +Q+ VISG TG G
Sbjct: 523 KQFRMKQASRQFQSILQERQSLPAWEERETILNLLRKHQVVVISGMTGCG 572
Score = 39.7 bits (91), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 325 ELEGVNNDVIFSLLQHICTTQR---PGAILVFLPGWDTINSLHRSMCQSSFFNS 375
+ E VN ++I +LL+ I + PGAILVFLPG I L+ + +S FN+
Sbjct: 822 DFEKVNLELIEALLEWIVDGKHSYPPGAILVFLPGLAEIKMLYEQLQSNSLFNN 875
>gi|76803804|sp|P24785.2|MLE_DROME RecName: Full=Dosage compensation regulator; AltName:
Full=ATP-dependent RNA helicase mle; AltName:
Full=Protein male-less; AltName: Full=Protein maleless;
AltName: Full=Protein no action potential
Length = 1293
Score = 118 bits (296), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 81/116 (69%), Gaps = 1/116 (0%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFF-NSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVL 247
ILVFLPGW+ I +L + + ++ F ++S++QI+P HS +P Q+ +F PEGV KI+L
Sbjct: 656 ILVFLPGWNLIFALMKFLQNTNIFGDTSQYQILPCHSQIPRDEQRKVFEPVPEGVTKIIL 715
Query: 248 ATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
+TNIAETSITIDDIV+V+D K +M F +N+ + W S N +QR+GRAGR
Sbjct: 716 STNIAETSITIDDIVFVIDICKARMKLFTSHNNLTSYATVWASKTNLEQRKGRAGR 771
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 312 QYPNDVLNMLKDPELEGVNNDVIFSLLQHICTTQRPGAILVFLPGWDTINSLHRSMCQSS 371
Q + + ML + + V+ +++ +LL HI + PGAILVFLPGW+ I +L + + ++
Sbjct: 621 QKTRNAMAMLSESD---VSFELLEALLMHIKSKNIPGAILVFLPGWNLIFALMKFLQNTN 677
Query: 372 FFNSCLLYE 380
F Y+
Sbjct: 678 IFGDTSQYQ 686
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 39 RKLQSRR-----YQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
R L+ RR Y++ LE R+KLP MR +L + +N + +I G TG G
Sbjct: 362 RSLRDRRQNDNEYRQFLEFREKLPIAAMRSEILTAINDNPVVIIRGNTGCG 412
>gi|239983830|sp|B2RR83.1|YTDC2_MOUSE RecName: Full=Probable ATP-dependent RNA helicase YTHDC2
Length = 1445
Score = 118 bits (296), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 80/118 (67%), Gaps = 3/118 (2%)
Query: 189 ILVFLPGWDTINSLH-RSMCQSSFF--NSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKI 245
IL+FLPG+D I L R + F N+ R+Q+ LHS + T QK + PP GVRKI
Sbjct: 640 ILIFLPGYDEIVGLRDRILFDDKRFADNTHRYQVFMLHSNMQTSDQKKVLKNPPAGVRKI 699
Query: 246 VLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
+L+TNIAETSIT++D+V+V+D GK K +FD + + LK WIS A+A QR+GRAGR
Sbjct: 700 ILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVTMLKMVWISKASAIQRKGRAGR 757
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 327 EGVNNDVIFSLLQHICTTQRPGAILVFLPGWDTINSL 363
E V+ D+I LL +IC + GAIL+FLPG+D I L
Sbjct: 617 EKVDLDLIMHLLYNICHSCDAGAILIFLPGYDEIVGL 653
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 24/32 (75%)
Query: 53 RKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
R+ LP ++ ++ ++ +++ N++ +I GETGSG
Sbjct: 205 RQSLPVFEKQEEIVKIIKENKVVLIVGETGSG 236
>gi|94710282|sp|Q6P5D3.2|DHX57_MOUSE RecName: Full=Putative ATP-dependent RNA helicase DHX57; AltName:
Full=DEAH box protein 57
Length = 1388
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 79/118 (66%), Gaps = 3/118 (2%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFN---SSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKI 245
+LVFLPG I L+ + +S FN S R I PLHS L + Q+++F PP GV KI
Sbjct: 852 VLVFLPGLAEIKMLYEQLQSNSLFNNRRSHRCVIHPLHSSLSSEEQQAVFVKPPMGVTKI 911
Query: 246 VLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
+++TNIAETSITIDD+VYV+D GK K +D + +L+ ++S ANA QR+GRAGR
Sbjct: 912 IISTNIAETSITIDDVVYVIDSGKMKEKRYDAGKGMESLEDTFVSQANALQRKGRAGR 969
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%)
Query: 40 KLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
K SR++ +L+ R+ LP+++ R+ +L ++ +Q+ VISG TG G
Sbjct: 529 KQASRQFHAILQERQLLPAWEERETILKLLSKHQVVVISGMTGCG 573
Score = 38.9 bits (89), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 325 ELEGVNNDVIFSLLQHICTTQR---PGAILVFLPGWDTINSLHRSMCQSSFFNS 375
+ E VN ++I +LL+ I + PGA+LVFLPG I L+ + +S FN+
Sbjct: 824 DFEKVNLELIEALLEWIVDGKHAYPPGAVLVFLPGLAEIKMLYEQLQSNSLFNN 877
>gi|239938805|sp|Q9H6S0.2|YTDC2_HUMAN RecName: Full=Probable ATP-dependent RNA helicase YTHDC2
Length = 1430
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 79/118 (66%), Gaps = 3/118 (2%)
Query: 189 ILVFLPGWDTINSLH-RSMCQSSFFNSS--RFQIIPLHSMLPTVSQKSIFNTPPEGVRKI 245
+L+FLPG+D I L R + F S R+Q+ LHS + T QK + PP GVRKI
Sbjct: 625 VLIFLPGYDEIVGLRDRILFDDKRFADSTHRYQVFMLHSNMQTSDQKKVLKNPPAGVRKI 684
Query: 246 VLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
+L+TNIAETSIT++D+V+V+D GK K +FD + + LK WIS A+A QR+GRAGR
Sbjct: 685 ILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVTMLKMVWISKASAIQRKGRAGR 742
Score = 39.7 bits (91), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 327 EGVNNDVIFSLLQHICTTQRPGAILVFLPGWDTINSLHRSMC--QSSFFNSCLLYEFAMV 384
E V+ D+I LL +IC + GA+L+FLPG+D I L + F +S Y+ M+
Sbjct: 602 EKVDLDLIMHLLYNICHSCDAGAVLIFLPGYDEIVGLRDRILFDDKRFADSTHRYQVFML 661
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 44 RRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
R E R+ LP ++ ++ ++ +++ N++ +I GETGSG
Sbjct: 181 RGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSG 221
>gi|81911463|sp|Q6PGC1.1|DHX29_MOUSE RecName: Full=ATP-dependent RNA helicase Dhx29; AltName: Full=DEAH
box protein 29
Length = 1365
Score = 115 bits (287), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 77/115 (66%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
+L+FLPG I L+ + F S R+Q+I LHS+L T Q + F PP GVRKIVLA
Sbjct: 869 VLIFLPGLAHIQQLYDLLSSDRRFYSERYQVIALHSVLSTQDQAAAFMFPPPGVRKIVLA 928
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
TNIAET ITI D+V+V+D G+TK + + +++L ++S A+A QR+GRAGR
Sbjct: 929 TNIAETGITIPDVVFVIDTGRTKENKYHESSQMSSLVETFVSKASALQRQGRAGR 983
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 55/94 (58%), Gaps = 16/94 (17%)
Query: 4 PHSPKGLTHS-VTSWETRQKLLNDPVL-----------DAAFKKEMIRKLQSR-RYQEML 50
P S KG + SWE L++D L D A + + R+LQS +YQ +L
Sbjct: 509 PESEKGGSEDPEESWEN---LVSDEDLAALSLEPTSAEDLAPVRSLFRRLQSTPKYQRLL 565
Query: 51 EARKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
+ R++LP ++ RD++++ ++ +++ V++GETGSG
Sbjct: 566 KERQQLPVFKHRDSIVETLKRHRVVVVAGETGSG 599
>gi|110278938|sp|Q7Z478.2|DHX29_HUMAN RecName: Full=ATP-dependent RNA helicase DHX29; AltName: Full=DEAH
box protein 29; AltName: Full=Nucleic acid helicase DDXx
Length = 1369
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 77/115 (66%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
+L+FLPG I L+ + F S R+++I LHS+L T Q + F PP GVRKIVLA
Sbjct: 870 VLIFLPGLAHIQQLYDLLSNDRRFYSERYKVIALHSILSTQDQAAAFTLPPPGVRKIVLA 929
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
TNIAET ITI D+V+V+D G+TK + + +++L ++S A+A QR+GRAGR
Sbjct: 930 TNIAETGITIPDVVFVIDTGRTKENKYHESSQMSSLVETFVSKASALQRQGRAGR 984
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
Query: 35 KEMIRKLQSR-RYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
+ + RKLQS +YQ++L+ R++LP ++ RD++++ ++ +++ V++GETGSG
Sbjct: 550 RNLFRKLQSTPKYQKLLKERQQLPVFKHRDSIVETLKRHRVVVVAGETGSG 600
>gi|71153340|sp|Q68FK8.1|DHX9_XENLA RecName: Full=ATP-dependent RNA helicase A-like protein; AltName:
Full=DEAH box protein 9; AltName: Full=Nuclear DNA
helicase II; Short=NDH II
Length = 1262
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 77/115 (66%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
+LVFLPGW+ I ++ + + + F S + I+PLHS +P Q+ +F+ P+G+ K++L+
Sbjct: 655 VLVFLPGWNLIYAMQKHLEMNPHFGSHSYCILPLHSQIPRDEQRKVFDPVPDGIIKVILS 714
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
TNIAETSITI+D+VYV+D K K+ F +N+ W S N +QR+GRAGR
Sbjct: 715 TNIAETSITINDVVYVIDSCKQKVKLFTSHNNMTNYATVWASKTNLEQRKGRAGR 769
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 332 DVIFSLLQHICTTQRPGAILVFLPGWDTINSLHRSMCQSSFFNS---CLL 378
++I +LL++I T PGA+LVFLPGW+ I ++ + + + F S C+L
Sbjct: 637 ELIEALLKYIETLNVPGAVLVFLPGWNLIYAMQKHLEMNPHFGSHSYCIL 686
>gi|311033371|sp|Q14147.2|DHX34_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DHX34; AltName:
Full=DEAH box protein 34
Length = 1143
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 78/116 (67%), Gaps = 1/116 (0%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
+LVFL G I+++ + Q+ ++ R+ ++PLHS L Q +F+ P GVRK +L+
Sbjct: 381 LLVFLSGMAEISAVLEA-AQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILS 439
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRT 304
TNIAETS+TID I +VVD GK K ++D + + L+ WIS A+A+QR+GRAGRT
Sbjct: 440 TNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRT 495
>gi|74582920|sp|O94536.1|UCP12_SCHPO RecName: Full=Putative ATP-dependent RNA helicase ucp12
Length = 1327
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 79/118 (66%), Gaps = 5/118 (4%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
ILVFLPG ++++ R + + + S+F+++PLH+ L T Q+ F T + RKI+ A
Sbjct: 816 ILVFLPG---VSNIARCIREIKSKDGSKFEVLPLHASLNTSEQRRCFKTYTK--RKIICA 870
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK 306
TNIAETSITIDD+V V+D G+ K ++DV+ ++ T K W S A +QRRGRAGR K
Sbjct: 871 TNIAETSITIDDVVAVIDSGRVKQIDYDVERDLVTFKETWASRAACQQRRGRAGRVKK 928
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 34/45 (75%)
Query: 40 KLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
+++S YQ + R+KLP+++ R ++D ++++Q+ VISGETGSG
Sbjct: 561 RVKSPSYQLKVREREKLPAWESRRKIMDAIQHSQVVVISGETGSG 605
>gi|224487876|sp|A3KMI0.1|DHX29_XENLA RecName: Full=ATP-dependent RNA helicase DHX29; AltName: Full=DEAH
box protein 29
Length = 1362
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Query: 189 ILVFLPGWDTINSLHRSMCQSS-FFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVL 247
+L+FLPG I L+ + F + R+++I LHS+L + Q F PP G RKIVL
Sbjct: 864 VLIFLPGLADIQQLYDILSSDKRFHDRRRYKLIALHSILSSQDQAEAFILPPAGTRKIVL 923
Query: 248 ATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
ATNIAET ITI D+V+V+D G+TK + + +++L +IS A+A QR+GRAGR
Sbjct: 924 ATNIAETGITIPDVVFVIDAGRTKENRYHESSQMSSLVETFISKASALQRQGRAGR 979
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 30/42 (71%)
Query: 43 SRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
S +Y+ +L R++LP + + +L+ ++ +++ V++GETGSG
Sbjct: 553 SMKYKRLLNDREQLPVFARGNFILETLKRHRVIVVAGETGSG 594
>gi|47116751|sp|Q9DBV3.2|DHX34_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DHX34; AltName:
Full=DEAH box protein 34
Length = 1145
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
+LVFL G I ++ Q+ + R+ ++PLHS L Q +F+ P GVRK +L+
Sbjct: 383 LLVFLSGMAEITTV-LDAAQAYASLTQRWVVLPLHSALSVSDQDKVFDVAPAGVRKCILS 441
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRT 304
TNIAETS+TID I +VVD GK K ++D + + L+ WIS A+A+QR+GRAGRT
Sbjct: 442 TNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRT 497
>gi|74644973|sp|Q06698.1|YL419_YEAST RecName: Full=Putative ATP-dependent RNA helicase YLR419W
Length = 1435
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 78/137 (56%), Gaps = 8/137 (5%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
I+VFLPG IN + S N + F ++PLHS L QK +F G RK+V++
Sbjct: 866 IIVFLPGVGEINKCCNLLANKS--NEADFMVLPLHSALTPEDQKRVFKKY-HGKRKVVVS 922
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR----- 303
TNIAETSITIDD V +D G+ K ++ KDN L +IS A KQRRGRAGR
Sbjct: 923 TNIAETSITIDDCVATIDTGRAKSMFYNPKDNTTKLIESFISKAEVKQRRGRAGRVREGL 982
Query: 304 TLKRSETQQYPNDVLNM 320
+ K Y ND+++M
Sbjct: 983 SYKLFSKNLYENDMISM 999
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 31 AAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH-- 88
+ ++E ++++S Y+ M R++LP+++ + ++D++ N++ +I+GETGSG
Sbjct: 579 SVLREEYTKRIKSSEYKSMQLVREQLPAWKKQKVIIDIINKNEVVLITGETGSGKSTQVV 638
Query: 89 ---LDFITLKRSE 98
LDF+ ++ +
Sbjct: 639 QFILDFLQKEKGD 651
>gi|74676041|sp|O60114.1|YG65_SCHPO RecName: Full=Uncharacterized helicase C15C4.05
Length = 1428
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 74/118 (62%), Gaps = 5/118 (4%)
Query: 189 ILVFLPGWDTI---NSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKI 245
+LVFLPG I SL M F N +F I LHS L + Q+S+FN PP+G RKI
Sbjct: 906 VLVFLPGISEILRVKSLIEDMPM--FRNHRKFCIYMLHSTLSSAQQQSVFNIPPKGCRKI 963
Query: 246 VLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
VL+TNIAET +TI D+ V+D G + ++ + +++ L ++S ANAKQR GRAGR
Sbjct: 964 VLSTNIAETGVTIPDVTCVIDTGVHREMRYNSRRHLSRLTDTFVSKANAKQRSGRAGR 1021
Score = 39.7 bits (91), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 39 RKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLDFITLKRS 97
++L+S ++ R +LP+ R+ ++D V N+Q+ +ISG+TG G + L+ S
Sbjct: 614 QQLESESAEKFKVFRNQLPATMFRETIIDAVNNSQLLIISGDTGCGKSTQIPAFLLENS 672
>gi|27735187|sp|Q38953.2|DHX8_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA
helicase
Length = 1168
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 75/123 (60%), Gaps = 11/123 (8%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFF-------NSSRFQIIPLHSMLPTVSQKSIFNTPPEG 241
ILVFL G + I+S CQS + N I+P++S LP+ Q IF+ PP G
Sbjct: 726 ILVFLTGQEEIDS----ACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPPPPG 781
Query: 242 VRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRA 301
RK+V+ATNIAE S+TID I YVVD G K + ++ K + +L IS A+AKQR GRA
Sbjct: 782 KRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQASAKQRAGRA 841
Query: 302 GRT 304
GRT
Sbjct: 842 GRT 844
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 51 EARKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
E R+ LP Y+++ ++ V +NQ+ V+ GETGSG
Sbjct: 510 EQRESLPIYKLKKELIQAVHDNQVLVVIGETGSG 543
>gi|122145767|sp|Q17R09.1|PRP16_BOVIN RecName: Full=Pre-mRNA-splicing factor ATP-dependent RNA helicase
PRP16; AltName: Full=ATP-dependent RNA helicase DHX38;
AltName: Full=DEAH box protein 38
Length = 1227
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 23/206 (11%)
Query: 118 VNNDVIFSLLQHICTTQRPGAILVYCT-------YTFMG----------VSPMKVFFCKN 160
+N DV+F LL+ + + ++V +F G P+ + F K
Sbjct: 659 LNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFASFFGNVPIFHIPGRTFPVDILFSKT 718
Query: 161 VLQRLMKGVGANSPKRWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQ--SSFFNSSRFQ 218
+ ++ + K+ +++ S IL+F+PG + I + + N+
Sbjct: 719 PQEDYVEA----AVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALA 774
Query: 219 IIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVK 278
++P++S LP+ Q IF P+GVRK ++ATNIAETS+T+D I++V+D G K+ F+ +
Sbjct: 775 VLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPR 834
Query: 279 DNIATLKPEWISLANAKQRRGRAGRT 304
+ L+ IS ANA QR GRAGRT
Sbjct: 835 IGMDALQIYPISQANANQRSGRAGRT 860
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 49 MLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHL 89
+LE R+ LP + ++ +L ++R+N I ++ GETGSG L
Sbjct: 525 ILEQRQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQL 565
>gi|85700389|sp|Q92620.2|PRP16_HUMAN RecName: Full=Pre-mRNA-splicing factor ATP-dependent RNA helicase
PRP16; AltName: Full=ATP-dependent RNA helicase DHX38;
AltName: Full=DEAH box protein 38
Length = 1227
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 25/207 (12%)
Query: 118 VNNDVIFSLLQHICTTQRPGAILVYCTYT--------FMG----------VSPMKVFFCK 159
+N DV+F LL+ + +R L+ + T F G P+ + F K
Sbjct: 659 LNTDVLFGLLREVVA-RRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSK 717
Query: 160 NVLQRLMKGVGANSPKRWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQ--SSFFNSSRF 217
+ ++ + K+ +++ S IL+F+PG + I + + N+
Sbjct: 718 TPQEDYVEA----AVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPAL 773
Query: 218 QIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDV 277
++P++S LP+ Q IF P+GVRK ++ATNIAETS+T+D I++V+D G K+ F+
Sbjct: 774 AVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNP 833
Query: 278 KDNIATLKPEWISLANAKQRRGRAGRT 304
+ + L+ IS ANA QR GRAGRT
Sbjct: 834 RIGMDALQIYPISQANANQRSGRAGRT 860
Score = 38.5 bits (88), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 33 FKKEMIRKLQSR----RYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH 88
F M RK ++ + + +LE R+ LP + ++ +L ++R+N I ++ GETGSG
Sbjct: 505 FADHMKRKSEASSEFAKKKSILEQRQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQ 564
Query: 89 L 89
L
Sbjct: 565 L 565
>gi|48474648|sp|Q9HDY4.1|YK16_SCHPO RecName: Full=Putative ATP-dependent RNA helicase PB1A10.06c
Length = 1183
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 61/86 (70%)
Query: 219 IIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVK 278
++PL+S+L T Q +F++ PEG R ++ATN+AETSITI +I YVVDCGK K ++ K
Sbjct: 704 VLPLYSLLTTEDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVVDCGKAKERVYNEK 763
Query: 279 DNIATLKPEWISLANAKQRRGRAGRT 304
++ + WIS ANA QR GRAGRT
Sbjct: 764 TSVQKFEVRWISKANADQRAGRAGRT 789
>gi|48474990|sp|Q9P774.2|PRP16_SCHPO RecName: Full=Pre-mRNA-splicing factor ATP-dependent RNA helicase
prp16
Length = 1173
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 23/206 (11%)
Query: 118 VNNDVIFSLLQHICTTQRPGAILVYCT----------------YTFMGVS-PMKVFFCKN 160
+N D++ LL+ + + +R +LV +T G + P+ + F K
Sbjct: 619 LNTDILMGLLKKVLSRRRDIKLLVTSATMNSQKFSDFFGGAPQFTIPGRTYPVDIMFAKA 678
Query: 161 VLQRLMKGVGANSPKRWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQ--SSFFNSSRFQ 218
++ + ++ +++ S ILVF+ G + I + + + ++ R
Sbjct: 679 PCSDYVEA----AVRQVLQIHLSQPAGDILVFMTGQEDIEATCEIIADRLNQLHDAPRLS 734
Query: 219 IIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVK 278
I+P++S +P Q IF++ GVRK+V+ATNIAETS+T+ I YVVD G K+ ++ K
Sbjct: 735 ILPIYSQMPADLQAKIFDSAEPGVRKVVVATNIAETSLTVHGISYVVDTGYCKLKMYNSK 794
Query: 279 DNIATLKPEWISLANAKQRRGRAGRT 304
I TL+ IS ANA QR GRAGRT
Sbjct: 795 LGIDTLQVTPISQANANQRAGRAGRT 820
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 45 RYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHL 89
R + E R+ LP++ +R+ +L ++R+NQ+ ++ GETGSG L
Sbjct: 481 RTKSYREQREFLPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQL 525
>gi|3915519|sp|O45244.2|DHX16_CAEEL RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA
helicase mog-4; AltName: Full=Masculinization of
germline protein 4; AltName: Full=Sex determination
protein mog-4
Length = 1008
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 75/119 (63%), Gaps = 3/119 (2%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRF-QIIPL--HSMLPTVSQKSIFNTPPEGVRKI 245
ILVFL G + I ++ ++ + S S+ ++IPL ++ LP+ Q IF P+ RK+
Sbjct: 577 ILVFLTGQEEIETVQEALMERSKALGSKIKELIPLPVYANLPSDLQAKIFEPTPKDARKV 636
Query: 246 VLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRT 304
VLATNIAETS+TID I YV+D G +K ++FD + + L IS A A QR GRAGRT
Sbjct: 637 VLATNIAETSVTIDGINYVIDPGFSKQNSFDARSGVEHLHVVTISKAAANQRAGRAGRT 695
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 35 KEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHL 89
+E++ ++ + E RK LP Y RDA ++ V+ +Q+ +I GETGSG L
Sbjct: 343 EEVVETEAEKKKMSIEETRKSLPVYAFRDAFIEAVKEHQVLIIEGETGSGKTTQL 397
>gi|38257651|sp|Q8IY37.1|DHX37_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DHX37; AltName:
Full=DEAH box protein 37
Length = 1157
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%)
Query: 217 FQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFD 276
++PL+S+L Q +F PPEG R V+ATN+AETS+TI I YVVDCGK K +D
Sbjct: 588 LHVLPLYSLLAPEKQAQVFKPPPEGTRLCVVATNVAETSLTIPGIKYVVDCGKVKKRYYD 647
Query: 277 VKDNIATLKPEWISLANAKQRRGRAGRT 304
+++ + W+S A+A QR GRAGRT
Sbjct: 648 RVTGVSSFRVTWVSQASADQRAGRAGRT 675
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 45 RYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
R EM E R KLP +++ V + I ++ GETGSG
Sbjct: 241 RSPEMQEERLKLPILSEEQVIMEAVAEHPIVIVCGETGSG 280
>gi|3913436|sp|Q22307.3|DHX9_CAEEL RecName: Full=Probable ATP-dependent RNA helicase A; AltName:
Full=Nuclear DNA helicase II; Short=NDH II
Length = 1301
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 189 ILVFLPGWDTINSL-HRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVL 247
+LVFLPGW I +L +R + F +++++I+PLHS L + Q+ +FN P G RKI++
Sbjct: 662 VLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFNHYP-GKRKIIV 720
Query: 248 ATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQ 296
+TNIAETSITIDD+VYV+D K K + +N+ W S N Q
Sbjct: 721 STNIAETSITIDDVVYVIDSCKAKERMYTSNNNMVHFATVWASKTNVIQ 769
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 333 VIFSLLQHICTTQRPGAILVFLPGWDTINSLHRSMCQSSFFNSCLLYEF 381
VI ++L I + GA+LVFLPGW I +L + + F YE
Sbjct: 645 VIEAILNDIASRGVDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEI 693
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 53 RKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
R +LP Q R+ ++ V N++T+I GETG G
Sbjct: 378 RGELPVAQYRENIVQTVAENRVTLIKGETGCG 409
>gi|187471036|sp|A2A4P0.1|DHX8_MOUSE RecName: Full=ATP-dependent RNA helicase DHX8; AltName: Full=DEAH
box protein 8
Length = 1244
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 73/120 (60%), Gaps = 5/120 (4%)
Query: 189 ILVFLPGWDTINS----LHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRK 244
ILVFL G + I++ L+ M +S + I+P++S LP+ Q IF+ P G RK
Sbjct: 800 ILVFLTGQEEIDTACEILYERM-KSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRK 858
Query: 245 IVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRT 304
+V+ATNIAETS+TID I YVVD G K ++ K I L IS A AKQR GRAGRT
Sbjct: 859 VVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRT 918
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 27/36 (75%)
Query: 49 MLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
+LE R+ LP Y++++ ++ V +NQI ++ GETGSG
Sbjct: 582 ILEQRESLPIYKLKEQLVQAVHDNQILIVIGETGSG 617
>gi|130830|sp|P24384.1|PRP22_YEAST RecName: Full=Pre-mRNA-splicing factor ATP-dependent RNA helicase
PRP22
Length = 1145
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 72/124 (58%), Gaps = 13/124 (10%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSR--------FQIIPLHSMLPTVSQKSIFNTPPE 240
ILVFL G + I+S C ++ + I+P++S LP+ Q IF P+
Sbjct: 694 ILVFLTGQEEIDS-----CCEILYDRVKTLGDSIGELLILPVYSALPSEIQSKIFEPTPK 748
Query: 241 GVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGR 300
G RK+V ATNIAETSITID I YVVD G K++ ++ + I L IS A A QR+GR
Sbjct: 749 GSRKVVFATNIAETSITIDGIYYVVDPGFAKINIYNARAGIEQLIVSPISQAQANQRKGR 808
Query: 301 AGRT 304
AGRT
Sbjct: 809 AGRT 812
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 53 RKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
R+ LP Y MR ++ VR+NQ VI GETGSG
Sbjct: 480 RQTLPVYAMRSELIQAVRDNQFLVIVGETGSG 511
>gi|3913431|sp|O42643.1|PRP22_SCHPO RecName: Full=Pre-mRNA-splicing factor ATP-dependent RNA helicase
prp22
Length = 1168
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 72/119 (60%), Gaps = 3/119 (2%)
Query: 189 ILVFLPGWDTINSLHRSMCQ-SSFFNSS--RFQIIPLHSMLPTVSQKSIFNTPPEGVRKI 245
ILVFL G + I++ + + S S I+P++S LP+ Q IF P G RK+
Sbjct: 722 ILVFLTGQEEIDTSCEILYERSKMLGDSIPELVILPVYSALPSEIQSRIFEPAPPGGRKV 781
Query: 246 VLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRT 304
V+ATNIAETS+TID I YVVD G K S FD K + +L IS A A+QR GRAGRT
Sbjct: 782 VIATNIAETSLTIDGIYYVVDPGFVKQSCFDPKLGMDSLIVTPISQAQARQRSGRAGRT 840
Score = 39.3 bits (90), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 49 MLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
M E R+ LP +++R L+ V NQI V+ GETGSG
Sbjct: 503 MKEQREGLPVFKLRKQFLEAVSKNQILVLLGETGSG 538
>gi|3023637|sp|Q14562.1|DHX8_HUMAN RecName: Full=ATP-dependent RNA helicase DHX8; AltName: Full=DEAH
box protein 8; AltName: Full=RNA helicase HRH1
Length = 1220
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 73/120 (60%), Gaps = 5/120 (4%)
Query: 189 ILVFLPGWDTINS----LHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRK 244
ILVFL G + I++ L+ M +S + I+P++S LP+ Q IF+ P G RK
Sbjct: 776 ILVFLTGQEEIDTACEILYERM-KSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRK 834
Query: 245 IVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRT 304
+V+ATNIAETS+TID I YVVD G K ++ K I L IS A AKQR GRAGRT
Sbjct: 835 VVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRT 894
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 27/36 (75%)
Query: 49 MLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
+LE R+ LP Y++++ ++ V +NQI ++ GETGSG
Sbjct: 558 ILEQRESLPIYKLKEQLVQAVHDNQILIVIGETGSG 593
>gi|290457665|sp|Q14BI7.3|TDRD9_MOUSE RecName: Full=Putative ATP-dependent RNA helicase TDRD9; AltName:
Full=Tudor domain-containing protein 9
Length = 1383
Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 3/128 (2%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
+LVFLPG IN +H + R Q+ PLHS + Q ++F +P G RKI+L+
Sbjct: 389 VLVFLPGLGEINYMHELLTN---MIHKRLQVYPLHSSVTLEEQNNVFLSPVPGYRKIILS 445
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRS 308
TNIAE+S+T+ D+ YV+D T+ D N +L+ W S + QR+GRAGR K
Sbjct: 446 TNIAESSVTVPDVKYVIDFCLTRTLVCDEDTNYQSLRLSWASKTSCDQRKGRAGRVSKGY 505
Query: 309 ETQQYPND 316
+ P D
Sbjct: 506 CYRLIPRD 513
>gi|74996562|sp|Q54F05.1|DHX8_DICDI RecName: Full=ATP-dependent RNA helicase dhx8; AltName: Full=DEAH
box protein 8
Length = 1160
Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 75/120 (62%), Gaps = 5/120 (4%)
Query: 189 ILVFLPGWDTINS----LHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRK 244
IL+FL G + I++ L+ M +S N I+P++S LP+ Q IF P G RK
Sbjct: 719 ILLFLTGQEEIDAACQILYERM-KSLGSNVPDLIILPVYSALPSEMQTKIFEPAPPGSRK 777
Query: 245 IVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRT 304
+V+ATNIAETS+TID I YV+D G +K F+ K+ + +L IS A A+QR GRAGRT
Sbjct: 778 VVIATNIAETSLTIDGIYYVIDPGFSKQKCFNPKNGMDSLVVAPISQAAARQRSGRAGRT 837
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 51 EARKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
E R+ LP + +R+A L V +Q+ V+ GETGSG
Sbjct: 503 EQRESLPIFPLREAFLQAVSEHQLLVVIGETGSG 536
>gi|290457664|sp|Q8NDG6.3|TDRD9_HUMAN RecName: Full=Putative ATP-dependent RNA helicase TDRD9; AltName:
Full=Tudor domain-containing protein 9
Length = 1382
Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
+LVFLPG IN +H + R Q+ PLHS + Q ++F +P G RKI+L+
Sbjct: 388 VLVFLPGLGEINYMHELLTS---LVHKRLQVYPLHSSVALEEQNNVFLSPVPGYRKIILS 444
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRT 304
TNIAE+S+T+ D+ YV+D T+ D N +L+ W S + QR+GRAGR
Sbjct: 445 TNIAESSVTVPDVKYVIDFCLTRTLVCDEDTNYQSLRLSWASKTSCNQRKGRAGRV 500
>gi|290457666|sp|Q3MHU3.3|TDRD9_RAT RecName: Full=Putative ATP-dependent RNA helicase TDRD9; AltName:
Full=Tudor domain-containing protein 9
Length = 1384
Score = 91.7 bits (226), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
+LVFLPG IN +H + R Q+ PLHS + Q ++F +P G RKI+L+
Sbjct: 390 VLVFLPGLGEINYMHELLTN---MIHKRLQVYPLHSSVTLEEQNNVFLSPVPGYRKIILS 446
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK 306
TNIAE+S+T+ D+ YV+D T+ D N +L+ W S + QR+GRAGR K
Sbjct: 447 TNIAESSVTVPDVKYVIDFCLTRTLVCDEDTNYQSLRLSWASKTSCDQRKGRAGRVSK 504
>gi|384872707|sp|Q7QCW2.5|SPNE_ANOGA RecName: Full=Probable ATP-dependent RNA helicase spindle-E
Length = 1463
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 73/123 (59%), Gaps = 6/123 (4%)
Query: 189 ILVFLPGWDTINSLH---RSMCQSSFFNS---SRFQIIPLHSMLPTVSQKSIFNTPPEGV 242
I++FLPG + I + R+ S NS ++F I+ LHSMLP+ Q +F P G
Sbjct: 368 IIMFLPGINEIERMAEVLRNFLGDSNVNSQEQTKFTILKLHSMLPSEEQALVFTKPSPGY 427
Query: 243 RKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAG 302
RK++L+TNIAE+SITI D+ +V+D ++ D +N TL+ +W S N QR GR G
Sbjct: 428 RKVILSTNIAESSITIPDVKFVIDFCLHRVLVADTLNNFTTLRTQWASRNNCIQRAGRCG 487
Query: 303 RTL 305
R +
Sbjct: 488 RVM 490
>gi|19862987|sp|Q10752.2|CDC28_SCHPO RecName: Full=Pre-mRNA-splicing factor ATP-dependent RNA
helicase-like protein cdc28; AltName:
Full=Pre-mRNA-processing protein 8
Length = 1055
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 91/160 (56%), Gaps = 7/160 (4%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRF-QII--PLHSMLPTVSQKSIFNTPPEGVRKI 245
ILVFL G D I + +M + R +II P+++ LP+ Q IF+ P G RK+
Sbjct: 630 ILVFLTGQDEIELMSENMQELCRILGKRIPEIILCPIYANLPSELQAKIFDPTPPGARKV 689
Query: 246 VLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTL 305
VLATNIAETSITID + +V+D G K + ++ + + +L S A+A QR GRAGR
Sbjct: 690 VLATNIAETSITIDGVNFVIDSGFVKQNMYNPRTGMESLVSVPCSRASADQRAGRAGRVG 749
Query: 306 K----RSETQQYPNDVLNMLKDPELEGVNNDVIFSLLQHI 341
R T++ N+ L+M+ PE++ N I LL+ +
Sbjct: 750 PGKCFRLYTRRTYNNELDMVTSPEIQRTNLTNIVLLLKSL 789
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 52 ARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHL 89
+RK LP YQ +D +L + Q+ +I ETGSG L
Sbjct: 414 SRKSLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQL 451
>gi|290463304|sp|B4NBB0.1|SPNE_DROWI RecName: Full=Probable ATP-dependent RNA helicase spindle-E;
AltName: Full=Homeless
Length = 1432
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSS-RFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVL 247
+L+FLPG + I+++ S+ N + + II HS++ SQ+ +F +PP G RKI+L
Sbjct: 367 VLIFLPGINEIDNMAESIDHVMQENPALKVSIIRCHSLMTPDSQRDVFASPPVGYRKIIL 426
Query: 248 ATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
TNIAE+SIT+ D+ YV+D K+ D N ++L+ W S +N +QR GR GR
Sbjct: 427 TTNIAESSITVPDVSYVIDFCLAKVLVTDTATNFSSLRLVWASKSNCRQRAGRVGR 482
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 45 RYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHL-DFITLKRSETQQYP 103
+Y L K LP Y RD ++ +R N + ++ GETG G + +I + + +QY
Sbjct: 104 KYYFDLNRDKTLPIYTQRDQIMKAIRENTVVILKGETGCGKTTQVPQYIIDEAYQNRQYC 163
Query: 104 NDVL 107
N V+
Sbjct: 164 NIVV 167
>gi|2500543|sp|Q09530.1|MOG5_CAEEL RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA
helicase mog-5; AltName: Full=Masculinization of
germline protein 5; AltName: Full=Sex determination
protein mog-5
Length = 1200
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 108/223 (48%), Gaps = 34/223 (15%)
Query: 107 LNMLKDPELEGVNNDVIFSLLQHICTTQRPGAILVYCTYTFMGVS--------------- 151
L ML + ++ DV+F LL+ +RP L+ + T V
Sbjct: 656 LIMLDEAHERTIHTDVLFGLLK-AAARKRPELKLIITSATLDSVKFSEYFLEAPIFTIPG 714
Query: 152 ---PMKVFFCKNVLQRLMKGVGANSPKRWVKLLRSMLVVP---ILVFLPGWDTINS---- 201
P+++ + + ++ + +++ L P +LVFL G + I++
Sbjct: 715 RTFPVEILYTREPESDYLEAA-------HITVMQIHLTEPPGDVLVFLTGQEEIDTSCEV 767
Query: 202 LHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDI 261
L+ M +S + I+P++ LP+ Q IF+ P G RK+V+ATNIAETS+TID I
Sbjct: 768 LYERM-KSMGPDVPELIILPVYGALPSEMQTRIFDPAPAGKRKVVIATNIAETSLTIDGI 826
Query: 262 VYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRT 304
YVVD G K ++ K + +L IS A AKQR GRAGRT
Sbjct: 827 FYVVDPGFVKQKIYNPKSGMDSLVVTPISQAAAKQRSGRAGRT 869
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 49 MLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
M+E R+ LP + ++ +++ + +NQI V+ GETGSG
Sbjct: 533 MVEQRESLPIFALKKNLMEAMIDNQILVVVGETGSG 568
>gi|2500542|sp|Q04217.1|DHR1_YEAST RecName: Full=Probable ATP-dependent RNA helicase DHR1; AltName:
Full=DEAH box RNA helicase DHR1; AltName:
Full=Extracellular mutant protein 16
Length = 1267
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 60/86 (69%)
Query: 219 IIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVK 278
++PL+S+LPT Q +F PP+G R ++ATN+AETS+TI + YVVD G++K ++
Sbjct: 731 VLPLYSLLPTKEQMRVFQKPPQGSRLCIVATNVAETSLTIPGVRYVVDSGRSKERKYNES 790
Query: 279 DNIATLKPEWISLANAKQRRGRAGRT 304
+ + + + W+S A+A QR GRAGRT
Sbjct: 791 NGVQSFEVGWVSKASANQRSGRAGRT 816
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 45 RYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
R E+ +AR +LP + +++ + +N + +I GETGSG
Sbjct: 380 RSDEIQKARIQLPVFGEEHKIMEAIHHNDVVIICGETGSG 419
>gi|290463302|sp|B4HLH4.1|SPNE_DROSE RecName: Full=Probable ATP-dependent RNA helicase spindle-E;
AltName: Full=Homeless
Length = 1434
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
Query: 189 ILVFLPGWDTINSLHRSM-CQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVL 247
+L+FLPG I+++ ++ C + + I+ S++ +Q+ +FN PP G RKI+L
Sbjct: 368 VLIFLPGIYEIDTMAENITCMLENDRNIKVLIVRCFSLMTPENQRDVFNPPPPGFRKIIL 427
Query: 248 ATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
ATNIAE+SIT+ D+ YV+D TK+ D + ++L+ W S AN +QR GR GR
Sbjct: 428 ATNIAESSITVPDVSYVIDFCLTKVKVTDTASSFSSLRLTWASKANCRQRAGRVGR 483
>gi|290463315|sp|B3M383.1|SPNE_DROAN RecName: Full=Probable ATP-dependent RNA helicase spindle-E;
AltName: Full=Homeless
Length = 1429
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSS-RFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVL 247
+L+FLPG I+++ S+ + S + I+ S++ +Q+ +F+ PP G RKI+L
Sbjct: 363 VLIFLPGIYEIDNMAESLGNMTKEEPSMKLFIVRCFSLMTPDAQRDVFSPPPSGFRKIIL 422
Query: 248 ATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
ATNIAE+SIT+ D+ YV+D TK+ D N ++L+ W S AN +QR GR GR
Sbjct: 423 ATNIAESSITVPDVSYVIDFCLTKVLVTDTATNFSSLRLTWASKANCRQRAGRVGR 478
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 44 RRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHL-DFITLKRSETQQY 102
++Y+ L K LP Y R+ +++ + +Q+ ++ GETG G + +I + ++ QY
Sbjct: 99 KKYRFNLNRDKNLPIYAKREVIVNAINTHQVVILKGETGCGKTTQVPQYILDEGFKSGQY 158
Query: 103 PNDVL 107
N V+
Sbjct: 159 CNIVV 163
>gi|290463318|sp|B4K5R2.1|SPNE_DROMO RecName: Full=Probable ATP-dependent RNA helicase spindle-E;
AltName: Full=Homeless
Length = 1431
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 83/143 (58%), Gaps = 5/143 (3%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSS-RFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVL 247
+L+FLPG I+++ + + N + + I+ HS++ SQ+ +F PP G RK++L
Sbjct: 368 VLIFLPGIHEIDTMAEHIGRIVDENPNFKISIVRCHSLMSPDSQEEVFLPPPLGHRKVIL 427
Query: 248 ATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR---- 303
TNI+E+SIT+ D+ YV+D TK+ + D N ++L+ EW S N +QR GR GR
Sbjct: 428 TTNISESSITVPDVSYVIDFCLTKVLHTDTASNFSSLRLEWASKVNCRQRAGRVGRLRSG 487
Query: 304 TLKRSETQQYPNDVLNMLKDPEL 326
+ R T+ + + +N PE+
Sbjct: 488 RVYRMVTKDFYMNHMNEFGIPEM 510
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 44 RRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
++Y+ L K LP Y+ R+ +L +R N + ++ GETG G
Sbjct: 105 KKYRFDLNRNKNLPIYEQREDILAAIRENPVVILKGETGCG 145
Database: swissprot
Posted date: Jul 29, 2013 6:00 PM
Number of letters in database: 169,969,125
Number of sequences in database: 455,621
Lambda K H
0.321 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,745,879
Number of Sequences: 455621
Number of extensions: 6005991
Number of successful extensions: 15419
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 15057
Number of HSP's gapped (non-prelim): 388
length of query: 455
length of database: 169,969,125
effective HSP length: 120
effective length of query: 335
effective length of database: 115,294,605
effective search space: 38623692675
effective search space used: 38623692675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)