Query psy6094
Match_columns 455
No_of_seqs 303 out of 2783
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 17:27:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0923|consensus 100.0 2.9E-93 6.2E-98 721.7 28.0 392 45-448 253-766 (902)
2 KOG0922|consensus 100.0 3.1E-91 6.7E-96 714.5 29.2 395 42-448 36-550 (674)
3 KOG0924|consensus 100.0 8.9E-89 1.9E-93 689.7 24.9 389 48-448 347-856 (1042)
4 KOG0925|consensus 100.0 1.8E-85 4E-90 646.0 28.7 408 24-447 14-546 (699)
5 KOG0920|consensus 100.0 1.3E-83 2.8E-88 689.9 29.4 413 36-454 152-721 (924)
6 COG1643 HrpA HrpA-like helicas 100.0 2.2E-78 4.9E-83 652.2 34.0 406 29-447 22-561 (845)
7 PRK11131 ATP-dependent RNA hel 100.0 1.1E-73 2.3E-78 635.4 33.1 383 50-448 67-580 (1294)
8 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.9E-72 4E-77 627.5 35.2 386 49-447 59-570 (1283)
9 KOG0926|consensus 100.0 5.7E-73 1.2E-77 582.7 26.6 391 45-448 244-895 (1172)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 6.9E-65 1.5E-69 555.0 29.7 336 56-403 1-446 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 9.3E-64 2E-68 547.1 29.2 322 55-388 3-419 (812)
12 PHA02653 RNA helicase NPH-II; 100.0 1.2E-46 2.6E-51 403.2 19.7 293 61-384 168-584 (675)
13 KOG0921|consensus 100.0 1.7E-46 3.7E-51 390.7 14.8 401 39-448 360-940 (1282)
14 KOG0330|consensus 100.0 8.6E-36 1.9E-40 288.4 14.2 264 31-318 57-409 (476)
15 KOG0331|consensus 100.0 4.7E-35 1E-39 299.4 13.2 257 36-316 92-448 (519)
16 PRK11776 ATP-dependent RNA hel 100.0 2.1E-31 4.6E-36 279.0 15.9 257 36-316 5-349 (460)
17 COG0513 SrmB Superfamily II DN 100.0 1.2E-31 2.7E-36 282.8 13.8 257 35-315 29-379 (513)
18 KOG0328|consensus 100.0 8.5E-31 1.8E-35 244.3 16.2 279 7-318 7-375 (400)
19 PRK01172 ski2-like helicase; P 100.0 6.8E-30 1.5E-34 279.2 25.9 342 37-397 3-490 (674)
20 PRK11634 ATP-dependent RNA hel 100.0 1.7E-30 3.6E-35 279.4 16.6 255 37-315 8-351 (629)
21 PTZ00110 helicase; Provisional 100.0 3.5E-30 7.6E-35 274.0 17.6 257 36-316 131-484 (545)
22 KOG0340|consensus 100.0 7E-30 1.5E-34 244.9 15.1 259 35-317 7-362 (442)
23 KOG0345|consensus 100.0 6.8E-30 1.5E-34 252.6 14.1 267 42-330 13-384 (567)
24 PRK04837 ATP-dependent RNA hel 100.0 1.6E-29 3.5E-34 262.0 16.4 257 36-316 9-362 (423)
25 PRK10590 ATP-dependent RNA hel 100.0 2.6E-29 5.6E-34 262.8 16.9 256 37-316 3-352 (456)
26 PLN00206 DEAD-box ATP-dependen 100.0 2.2E-29 4.8E-34 266.9 16.2 257 36-316 122-475 (518)
27 PRK01297 ATP-dependent RNA hel 100.0 3.7E-29 8E-34 263.0 17.4 257 36-316 88-442 (475)
28 PRK11192 ATP-dependent RNA hel 100.0 4.7E-29 1E-33 259.4 17.0 257 36-316 2-352 (434)
29 PTZ00424 helicase 45; Provisio 100.0 2.1E-29 4.5E-34 259.4 13.9 263 31-317 24-375 (401)
30 PRK04537 ATP-dependent RNA hel 100.0 6.5E-29 1.4E-33 265.4 17.6 256 37-316 11-364 (572)
31 PRK02362 ski2-like helicase; P 100.0 3E-28 6.6E-33 268.4 23.2 345 37-394 3-509 (737)
32 KOG0333|consensus 100.0 3E-29 6.5E-34 250.7 11.2 257 36-316 246-624 (673)
33 KOG0342|consensus 100.0 1.3E-28 2.8E-33 245.1 14.3 260 31-316 78-437 (543)
34 KOG0343|consensus 100.0 3.7E-28 8.1E-33 244.0 16.1 257 36-314 70-420 (758)
35 KOG0338|consensus 100.0 3.1E-28 6.7E-33 242.6 11.9 267 26-316 172-533 (691)
36 TIGR03817 DECH_helic helicase/ 99.9 6E-26 1.3E-30 248.6 24.5 253 42-314 21-384 (742)
37 PRK00254 ski2-like helicase; P 99.9 9.4E-26 2E-30 248.0 23.1 343 37-394 3-500 (720)
38 KOG0332|consensus 99.9 1.7E-26 3.7E-31 222.8 14.3 262 35-314 90-441 (477)
39 KOG0347|consensus 99.9 1.7E-27 3.6E-32 239.3 6.5 259 33-316 179-570 (731)
40 KOG0326|consensus 99.9 1.3E-26 2.8E-31 219.6 8.6 259 33-315 83-428 (459)
41 PRK11057 ATP-dependent DNA hel 99.9 1.6E-25 3.4E-30 241.4 17.9 118 176-317 226-344 (607)
42 KOG0341|consensus 99.9 2.8E-26 6E-31 222.0 9.5 252 36-316 171-528 (610)
43 KOG0336|consensus 99.9 1.4E-26 3E-31 225.5 7.1 251 43-317 228-573 (629)
44 KOG0339|consensus 99.9 1.4E-26 3E-31 230.6 5.8 258 36-317 224-576 (731)
45 TIGR00614 recQ_fam ATP-depende 99.9 2.5E-25 5.4E-30 233.5 14.2 117 177-317 216-334 (470)
46 PLN03137 ATP-dependent DNA hel 99.9 1.2E-24 2.6E-29 239.1 15.9 116 177-316 670-787 (1195)
47 KOG0335|consensus 99.9 1.2E-25 2.7E-30 226.9 6.4 241 50-314 89-442 (482)
48 KOG0348|consensus 99.9 2.4E-24 5.1E-29 216.1 14.9 258 36-314 137-552 (708)
49 KOG0334|consensus 99.9 5.7E-25 1.2E-29 236.2 10.4 256 36-315 366-719 (997)
50 TIGR01389 recQ ATP-dependent D 99.9 1.8E-23 3.9E-28 225.5 17.7 118 176-317 214-332 (591)
51 KOG0327|consensus 99.9 6.4E-24 1.4E-28 206.5 10.6 267 14-316 14-370 (397)
52 KOG0346|consensus 99.9 3.1E-23 6.7E-28 204.0 14.0 260 31-315 15-409 (569)
53 PRK13767 ATP-dependent helicas 99.9 3.5E-22 7.6E-27 223.0 24.1 113 184-314 282-398 (876)
54 TIGR00580 mfd transcription-re 99.9 2.4E-22 5.2E-27 223.0 19.5 112 184-316 658-770 (926)
55 PRK10689 transcription-repair 99.9 1.2E-21 2.6E-26 221.7 18.0 111 184-315 807-918 (1147)
56 PRK10917 ATP-dependent DNA hel 99.9 2.5E-21 5.4E-26 211.2 18.7 110 184-314 469-587 (681)
57 KOG0344|consensus 99.9 1.1E-21 2.4E-26 199.8 14.7 256 40-319 141-498 (593)
58 TIGR02621 cas3_GSU0051 CRISPR- 99.9 2.3E-21 5.1E-26 210.2 15.1 94 184-306 270-379 (844)
59 TIGR00643 recG ATP-dependent D 99.9 4.5E-21 9.7E-26 207.8 16.9 110 184-314 446-564 (630)
60 KOG0350|consensus 99.9 2.6E-21 5.7E-26 193.1 13.0 120 177-316 420-540 (620)
61 TIGR01587 cas3_core CRISPR-ass 99.8 3.2E-20 6.8E-25 188.4 16.9 108 184-316 220-336 (358)
62 KOG4284|consensus 99.8 9.7E-21 2.1E-25 193.6 12.4 254 37-314 27-377 (980)
63 COG0514 RecQ Superfamily II DN 99.8 1.3E-19 2.9E-24 189.3 19.7 110 183-316 227-337 (590)
64 COG1201 Lhr Lhr-like helicases 99.8 2.5E-19 5.4E-24 193.5 20.9 107 184-313 251-361 (814)
65 KOG0337|consensus 99.8 2.7E-20 5.7E-25 182.7 10.8 255 37-316 23-368 (529)
66 COG1202 Superfamily II helicas 99.8 1.8E-19 3.8E-24 182.7 17.0 325 38-388 197-655 (830)
67 KOG0349|consensus 99.8 8.3E-20 1.8E-24 179.4 10.3 113 181-314 500-613 (725)
68 PRK09401 reverse gyrase; Revie 99.8 5.2E-18 1.1E-22 192.7 15.6 121 137-271 268-410 (1176)
69 PRK09751 putative ATP-dependen 99.8 4E-18 8.8E-23 194.7 14.0 106 184-307 242-374 (1490)
70 COG1204 Superfamily II helicas 99.7 5.1E-17 1.1E-21 177.4 18.5 205 184-399 251-526 (766)
71 COG1205 Distinct helicase fami 99.7 3.1E-17 6.7E-22 181.3 17.0 248 47-314 60-420 (851)
72 TIGR03158 cas3_cyano CRISPR-as 99.7 3.7E-17 8E-22 165.8 14.9 88 184-302 270-357 (357)
73 PHA02558 uvsW UvsW helicase; P 99.7 5.4E-17 1.2E-21 171.7 15.0 107 184-314 342-450 (501)
74 TIGR01054 rgy reverse gyrase. 99.7 1.8E-16 4E-21 180.4 16.8 87 177-274 318-412 (1171)
75 PRK14701 reverse gyrase; Provi 99.7 2.7E-17 5.8E-22 190.9 9.2 120 177-314 322-454 (1638)
76 KOG0354|consensus 99.7 5.9E-16 1.3E-20 164.1 16.3 112 184-314 411-527 (746)
77 PRK13766 Hef nuclease; Provisi 99.6 1.3E-15 2.8E-20 169.6 15.3 108 184-315 363-478 (773)
78 KOG0352|consensus 99.6 2.1E-15 4.5E-20 148.6 13.2 108 185-316 254-362 (641)
79 PRK09694 helicase Cas3; Provis 99.6 6.9E-15 1.5E-19 162.4 18.3 98 184-305 558-663 (878)
80 KOG0351|consensus 99.6 5.6E-15 1.2E-19 162.9 16.4 109 184-316 483-592 (941)
81 COG4098 comFA Superfamily II D 99.6 8.7E-15 1.9E-19 141.1 15.5 106 177-304 294-401 (441)
82 KOG0952|consensus 99.6 7.8E-15 1.7E-19 157.8 16.6 126 184-317 347-492 (1230)
83 COG1111 MPH1 ERCC4-like helica 99.6 1.7E-14 3.7E-19 145.7 15.5 111 184-316 364-481 (542)
84 COG1200 RecG RecG-like helicas 99.6 1E-14 2.2E-19 152.9 10.0 154 130-316 403-591 (677)
85 PRK05580 primosome assembly pr 99.5 7.7E-14 1.7E-18 152.3 14.9 102 198-311 438-544 (679)
86 TIGR00603 rad25 DNA repair hel 99.5 4.2E-14 9.1E-19 152.5 12.4 103 185-315 495-606 (732)
87 PRK12898 secA preprotein trans 99.5 2.4E-14 5.3E-19 152.6 9.0 114 177-316 462-586 (656)
88 KOG0921|consensus 99.5 1.9E-15 4.1E-20 159.7 -3.0 302 45-353 394-834 (1282)
89 COG1197 Mfd Transcription-repa 99.5 1.2E-13 2.5E-18 152.3 10.3 154 128-315 733-912 (1139)
90 PRK09200 preprotein translocas 99.5 2E-13 4.3E-18 148.6 11.2 112 177-314 417-539 (790)
91 KOG0950|consensus 99.5 3.6E-13 7.8E-18 144.5 12.8 117 185-315 459-610 (1008)
92 KOG0329|consensus 99.4 2.9E-13 6.2E-18 125.7 9.3 221 36-315 43-354 (387)
93 KOG0951|consensus 99.4 7.6E-12 1.7E-16 136.8 20.9 197 184-388 544-820 (1674)
94 TIGR00631 uvrb excinuclease AB 99.4 4.4E-13 9.5E-18 145.0 10.7 120 177-315 431-552 (655)
95 TIGR03714 secA2 accessory Sec 99.4 6.9E-13 1.5E-17 143.3 11.5 104 184-314 422-535 (762)
96 cd00079 HELICc Helicase superf 99.4 5.4E-13 1.2E-17 114.6 8.5 111 177-311 17-130 (131)
97 PRK05298 excinuclease ABC subu 99.4 6.2E-13 1.3E-17 144.6 11.0 119 177-314 435-555 (652)
98 TIGR00595 priA primosomal prot 99.4 9.4E-13 2E-17 139.0 11.2 100 199-310 271-375 (505)
99 KOG0353|consensus 99.4 2.1E-12 4.6E-17 125.8 12.4 91 177-273 307-398 (695)
100 PF00271 Helicase_C: Helicase 99.4 4.8E-13 1E-17 105.1 4.7 72 216-305 7-78 (78)
101 COG1203 CRISPR-associated heli 99.3 1.3E-11 2.8E-16 136.1 13.6 104 184-314 438-548 (733)
102 TIGR00963 secA preprotein tran 99.3 9.6E-12 2.1E-16 133.8 10.9 105 184-314 403-515 (745)
103 PRK12906 secA preprotein trans 99.3 1E-11 2.2E-16 134.7 10.5 105 184-314 438-551 (796)
104 smart00490 HELICc helicase sup 99.3 8.5E-12 1.8E-16 97.9 5.7 80 202-305 3-82 (82)
105 PRK04914 ATP-dependent helicas 99.2 3E-11 6.5E-16 134.7 10.5 113 179-314 486-603 (956)
106 PF04408 HA2: Helicase associa 99.2 2.4E-11 5.1E-16 100.9 7.0 71 352-427 1-102 (102)
107 KOG0948|consensus 99.2 1.9E-11 4.1E-16 128.0 7.5 129 177-315 374-538 (1041)
108 COG4581 Superfamily II RNA hel 99.2 5.8E-10 1.3E-14 123.3 16.1 128 177-314 370-535 (1041)
109 PRK12900 secA preprotein trans 99.1 9.1E-11 2E-15 128.4 9.2 112 177-314 587-709 (1025)
110 COG1061 SSL2 DNA or RNA helica 99.1 6.9E-10 1.5E-14 115.7 14.6 96 185-305 282-377 (442)
111 KOG0947|consensus 99.1 9.6E-10 2.1E-14 118.1 13.3 128 177-314 558-721 (1248)
112 KOG4150|consensus 99.0 7.7E-09 1.7E-13 105.8 16.0 105 184-306 523-629 (1034)
113 smart00847 HA2 Helicase associ 99.0 9.9E-10 2.1E-14 89.2 6.8 70 352-427 1-92 (92)
114 PRK13104 secA preprotein trans 98.8 1.8E-08 3.9E-13 110.4 10.9 68 184-259 442-509 (896)
115 KOG0953|consensus 98.8 1.2E-07 2.6E-12 97.3 16.0 147 181-344 352-514 (700)
116 PRK13107 preprotein translocas 98.8 3.5E-08 7.6E-13 107.9 10.8 68 184-259 447-514 (908)
117 TIGR02562 cas3_yersinia CRISPR 98.7 3.6E-07 7.8E-12 101.2 17.6 98 189-307 759-882 (1110)
118 PRK12904 preprotein translocas 98.7 3.4E-08 7.5E-13 108.0 9.6 75 177-259 419-495 (830)
119 COG1110 Reverse gyrase [DNA re 98.5 4.7E-06 1E-10 91.2 17.6 123 136-273 275-419 (1187)
120 PRK11448 hsdR type I restricti 98.4 2.3E-06 5.1E-11 98.0 12.9 111 184-314 696-813 (1123)
121 COG0556 UvrB Helicase subunit 98.4 2.9E-06 6.2E-11 87.2 11.5 120 176-314 434-555 (663)
122 cd00268 DEADc DEAD-box helicas 98.3 9.4E-06 2E-10 75.3 13.0 141 38-265 2-148 (203)
123 COG1198 PriA Primosomal protei 98.2 1.8E-05 3.8E-10 86.2 13.9 85 216-310 506-597 (730)
124 PF00270 DEAD: DEAD/DEAH box h 98.2 6.2E-06 1.3E-10 73.9 8.1 31 60-90 2-32 (169)
125 PRK12903 secA preprotein trans 97.7 0.00017 3.7E-09 79.1 10.9 104 184-314 424-537 (925)
126 PLN03142 Probable chromatin-re 97.7 0.00018 3.9E-09 81.6 9.8 108 184-315 485-598 (1033)
127 TIGR01407 dinG_rel DnaQ family 97.6 0.0002 4.4E-09 80.9 9.5 124 184-312 672-811 (850)
128 TIGR00348 hsdR type I site-spe 97.6 0.0023 4.9E-08 70.5 17.3 102 186-307 514-638 (667)
129 PRK12326 preprotein translocas 97.5 0.00051 1.1E-08 74.4 10.9 105 184-314 425-545 (764)
130 PRK13103 secA preprotein trans 97.0 0.0024 5.2E-08 70.9 9.0 67 184-259 447-514 (913)
131 PRK12899 secA preprotein trans 96.8 0.0052 1.1E-07 68.4 9.8 105 184-314 566-679 (970)
132 PF02562 PhoH: PhoH-like prote 96.8 0.0024 5.1E-08 59.6 5.6 34 55-88 2-35 (205)
133 PRK12901 secA preprotein trans 96.8 0.0034 7.3E-08 70.3 7.6 105 184-314 626-739 (1112)
134 CHL00122 secA preprotein trans 96.7 0.0093 2E-07 66.0 10.1 67 184-258 422-490 (870)
135 PF02399 Herpes_ori_bp: Origin 96.6 0.048 1E-06 60.0 14.7 107 184-314 280-386 (824)
136 PRK08074 bifunctional ATP-depe 96.4 0.016 3.4E-07 66.3 10.4 125 184-312 750-890 (928)
137 PF13307 Helicase_C_2: Helicas 96.4 0.0043 9.4E-08 56.0 4.8 123 184-312 7-147 (167)
138 PF07652 Flavi_DEAD: Flaviviru 96.3 0.0067 1.4E-07 53.1 5.1 25 70-94 2-28 (148)
139 KOG0949|consensus 96.3 0.0038 8.2E-08 68.8 4.3 95 219-330 965-1066(1330)
140 KOG0391|consensus 96.1 0.03 6.4E-07 63.0 10.0 114 184-318 1274-1389(1958)
141 PRK12899 secA preprotein trans 96.1 0.038 8.2E-07 61.8 10.8 29 58-86 93-121 (970)
142 COG1199 DinG Rad3-related DNA 95.9 0.057 1.2E-06 59.5 11.3 123 184-314 477-616 (654)
143 smart00487 DEXDc DEAD-like hel 95.9 0.0067 1.5E-07 54.7 3.3 36 55-90 6-42 (201)
144 COG4096 HsdR Type I site-speci 95.8 0.027 5.8E-07 61.6 7.9 109 186-314 426-543 (875)
145 KOG0392|consensus 95.8 0.031 6.7E-07 63.2 8.5 115 186-318 1340-1456(1549)
146 KOG0385|consensus 95.8 0.17 3.7E-06 55.0 13.6 112 184-316 485-599 (971)
147 PF04851 ResIII: Type III rest 95.6 0.0084 1.8E-07 53.9 2.8 30 57-86 3-39 (184)
148 PF13245 AAA_19: Part of AAA d 95.6 0.0075 1.6E-07 47.0 2.0 25 66-90 4-28 (76)
149 PF00448 SRP54: SRP54-type pro 95.4 0.012 2.5E-07 54.8 2.9 18 73-90 2-19 (196)
150 PRK11747 dinG ATP-dependent DN 95.3 0.094 2E-06 58.2 10.3 119 185-312 533-671 (697)
151 KOG0951|consensus 95.3 0.1 2.2E-06 59.5 10.2 120 184-314 1357-1492(1674)
152 PF00437 T2SE: Type II/IV secr 95.3 0.0097 2.1E-07 57.9 2.1 24 67-90 122-145 (270)
153 KOG1123|consensus 95.2 0.055 1.2E-06 56.0 7.4 105 184-316 541-653 (776)
154 smart00488 DEXDc2 DEAD-like he 95.2 0.016 3.4E-07 57.2 3.5 28 59-86 10-41 (289)
155 smart00489 DEXDc3 DEAD-like he 95.2 0.016 3.4E-07 57.2 3.5 28 59-86 10-41 (289)
156 PF13086 AAA_11: AAA domain; P 95.2 0.013 2.9E-07 54.8 2.7 31 60-90 4-35 (236)
157 PRK07246 bifunctional ATP-depe 95.1 0.16 3.5E-06 57.3 11.4 120 184-312 645-780 (820)
158 TIGR00604 rad3 DNA repair heli 95.1 0.096 2.1E-06 58.3 9.6 124 184-312 520-671 (705)
159 PRK13833 conjugal transfer pro 95.0 0.017 3.7E-07 57.8 3.1 26 65-90 137-162 (323)
160 PF13555 AAA_29: P-loop contai 95.0 0.012 2.5E-07 43.9 1.3 20 71-90 22-41 (62)
161 TIGR02782 TrbB_P P-type conjug 94.9 0.021 4.5E-07 56.7 3.4 28 63-90 123-150 (299)
162 PRK10536 hypothetical protein; 94.9 0.02 4.3E-07 55.2 3.1 35 54-88 56-90 (262)
163 PRK12902 secA preprotein trans 94.9 0.18 3.9E-06 56.2 10.7 68 184-258 437-505 (939)
164 COG1125 OpuBA ABC-type proline 94.8 0.029 6.2E-07 53.7 3.8 22 69-90 24-45 (309)
165 cd01130 VirB11-like_ATPase Typ 94.7 0.025 5.4E-07 51.9 3.2 24 67-90 20-43 (186)
166 KOG0384|consensus 94.6 0.084 1.8E-06 59.9 7.4 114 184-318 697-813 (1373)
167 TIGR00604 rad3 DNA repair heli 94.6 0.072 1.6E-06 59.2 6.9 30 57-86 10-43 (705)
168 PRK13900 type IV secretion sys 94.6 0.02 4.4E-07 57.6 2.3 27 67-93 155-181 (332)
169 PRK13851 type IV secretion sys 94.6 0.026 5.5E-07 57.1 3.1 24 67-90 157-180 (344)
170 PRK13894 conjugal transfer ATP 94.5 0.03 6.4E-07 56.1 3.2 26 65-90 141-166 (319)
171 cd00009 AAA The AAA+ (ATPases 94.4 0.034 7.4E-07 47.3 3.1 27 63-89 8-36 (151)
172 KOG1802|consensus 94.2 0.14 3E-06 54.8 7.3 28 59-86 412-439 (935)
173 KOG0389|consensus 94.0 0.31 6.8E-06 53.2 9.7 114 184-318 775-890 (941)
174 COG1126 GlnQ ABC-type polar am 93.9 0.022 4.8E-07 53.1 1.0 22 69-90 25-46 (240)
175 TIGR02524 dot_icm_DotB Dot/Icm 93.9 0.037 8E-07 56.3 2.6 28 216-243 238-265 (358)
176 PRK12898 secA preprotein trans 93.8 0.95 2.1E-05 49.5 13.2 29 56-86 102-130 (656)
177 COG1419 FlhF Flagellar GTP-bin 93.8 0.19 4E-06 51.4 7.3 19 72-90 203-221 (407)
178 KOG0387|consensus 93.7 0.45 9.8E-06 52.0 10.2 112 184-315 544-657 (923)
179 COG1136 SalX ABC-type antimicr 93.6 0.027 5.8E-07 53.3 0.8 22 69-90 28-49 (226)
180 cd01129 PulE-GspE PulE/GspE Th 93.5 0.059 1.3E-06 52.5 3.2 25 66-90 73-98 (264)
181 smart00382 AAA ATPases associa 93.5 0.035 7.6E-07 46.7 1.4 19 72-90 2-20 (148)
182 COG2804 PulE Type II secretory 93.5 0.059 1.3E-06 56.3 3.2 28 63-90 248-276 (500)
183 COG2805 PilT Tfp pilus assembl 93.5 0.033 7.1E-07 54.4 1.2 23 72-94 125-147 (353)
184 COG4962 CpaF Flp pilus assembl 93.0 0.067 1.4E-06 53.3 2.6 23 68-90 169-191 (355)
185 TIGR02788 VirB11 P-type DNA tr 93.0 0.05 1.1E-06 54.2 1.7 23 68-90 140-162 (308)
186 cd00046 DEXDc DEAD-like helica 92.8 0.051 1.1E-06 45.7 1.3 17 74-90 2-18 (144)
187 PRK11889 flhF flagellar biosyn 92.8 0.2 4.3E-06 51.4 5.6 18 73-90 242-259 (436)
188 COG0553 HepA Superfamily II DN 92.7 0.37 8E-06 54.6 8.5 110 188-318 713-824 (866)
189 PF13401 AAA_22: AAA domain; P 92.5 0.046 1E-06 46.5 0.7 21 70-90 2-22 (131)
190 KOG0390|consensus 92.5 0.58 1.3E-05 51.7 9.2 106 189-314 597-705 (776)
191 cd01131 PilT Pilus retraction 92.5 0.052 1.1E-06 50.4 1.1 17 74-90 3-19 (198)
192 PF13604 AAA_30: AAA domain; P 92.4 0.11 2.4E-06 48.1 3.2 31 60-90 4-36 (196)
193 COG0653 SecA Preprotein transl 92.4 0.16 3.4E-06 56.3 4.8 105 184-314 427-543 (822)
194 PF13207 AAA_17: AAA domain; P 92.4 0.059 1.3E-06 45.3 1.2 22 74-95 1-22 (121)
195 PF14532 Sigma54_activ_2: Sigm 92.3 0.5 1.1E-05 40.9 7.1 86 62-147 11-110 (138)
196 PRK05580 primosome assembly pr 92.3 0.22 4.7E-06 55.1 5.8 74 186-265 190-263 (679)
197 COG3839 MalK ABC-type sugar tr 92.2 0.054 1.2E-06 54.3 0.9 22 69-90 26-47 (338)
198 TIGR02525 plasmid_TraJ plasmid 92.2 0.079 1.7E-06 54.1 2.0 20 71-90 148-167 (372)
199 COG0630 VirB11 Type IV secreto 92.1 0.084 1.8E-06 52.7 2.1 26 65-90 136-161 (312)
200 TIGR02640 gas_vesic_GvpN gas v 92.1 0.12 2.6E-06 50.1 3.1 31 62-92 11-41 (262)
201 KOG2373|consensus 91.9 0.094 2E-06 52.1 2.1 32 63-94 264-296 (514)
202 COG1116 TauB ABC-type nitrate/ 91.9 0.061 1.3E-06 51.3 0.7 22 69-90 26-47 (248)
203 PF13671 AAA_33: AAA domain; P 91.9 0.07 1.5E-06 46.1 1.1 20 74-93 1-20 (143)
204 TIGR01420 pilT_fam pilus retra 91.8 0.083 1.8E-06 53.5 1.6 20 71-90 121-140 (343)
205 TIGR03263 guanyl_kin guanylate 91.6 0.085 1.8E-06 47.7 1.3 21 72-92 1-21 (180)
206 KOG1000|consensus 91.5 2.1 4.6E-05 44.7 11.2 106 184-310 490-598 (689)
207 COG4525 TauB ABC-type taurine 91.4 0.082 1.8E-06 48.7 1.1 22 69-90 28-49 (259)
208 PRK12726 flagellar biosynthesi 91.4 0.24 5.3E-06 50.5 4.4 21 70-90 204-224 (407)
209 PRK10436 hypothetical protein; 91.3 0.17 3.6E-06 53.3 3.3 20 71-90 217-236 (462)
210 TIGR00963 secA preprotein tran 91.3 2.4 5.3E-05 46.9 12.3 55 189-251 100-154 (745)
211 PF00005 ABC_tran: ABC transpo 91.3 0.063 1.4E-06 46.2 0.1 23 70-92 9-31 (137)
212 cd00820 PEPCK_HprK Phosphoenol 91.2 0.076 1.6E-06 44.2 0.6 23 69-91 12-34 (107)
213 TIGR02533 type_II_gspE general 91.2 0.16 3.6E-06 53.7 3.2 19 72-90 242-260 (486)
214 TIGR02538 type_IV_pilB type IV 91.2 0.17 3.6E-06 54.8 3.2 26 65-90 308-334 (564)
215 TIGR00595 priA primosomal prot 91.1 0.31 6.8E-06 51.9 5.3 75 185-265 24-98 (505)
216 TIGR03499 FlhF flagellar biosy 91.1 0.48 1E-05 46.5 6.2 19 72-90 194-212 (282)
217 PF05729 NACHT: NACHT domain 91.1 0.11 2.3E-06 45.8 1.4 18 73-90 1-18 (166)
218 COG1117 PstB ABC-type phosphat 91.1 0.093 2E-06 49.0 1.0 22 69-90 30-51 (253)
219 TIGR01407 dinG_rel DnaQ family 91.0 0.25 5.4E-06 56.2 4.6 29 58-86 246-278 (850)
220 cd03238 ABC_UvrA The excision 90.9 0.09 2E-06 47.9 0.8 22 69-90 18-39 (176)
221 PRK14974 cell division protein 90.7 0.46 9.9E-06 47.9 5.7 18 73-90 141-158 (336)
222 PRK14873 primosome assembly pr 90.7 0.49 1.1E-05 52.0 6.4 77 184-265 186-262 (665)
223 PRK00300 gmk guanylate kinase; 90.6 0.12 2.6E-06 47.8 1.4 23 70-92 3-25 (205)
224 COG2909 MalT ATP-dependent tra 90.6 0.51 1.1E-05 52.2 6.2 92 58-149 20-172 (894)
225 PRK14723 flhF flagellar biosyn 90.6 1.7 3.7E-05 48.4 10.3 19 72-90 185-203 (767)
226 TIGR03117 cas_csf4 CRISPR-asso 90.4 0.23 5E-06 54.1 3.5 24 63-86 7-30 (636)
227 PF13173 AAA_14: AAA domain 90.2 0.14 3.1E-06 43.7 1.4 20 71-90 1-20 (128)
228 PRK13764 ATPase; Provisional 90.2 0.19 4.2E-06 54.3 2.6 21 70-90 255-275 (602)
229 TIGR03238 dnd_assoc_3 dnd syst 90.2 0.23 4.9E-06 52.0 3.0 29 62-90 15-50 (504)
230 PF13191 AAA_16: AAA ATPase do 90.1 0.14 3E-06 46.2 1.3 21 70-90 22-42 (185)
231 PRK10078 ribose 1,5-bisphospho 90.1 0.14 3E-06 46.9 1.3 19 72-90 2-20 (186)
232 TIGR00150 HI0065_YjeE ATPase, 90.0 0.18 3.8E-06 43.8 1.8 27 64-90 14-40 (133)
233 PF00580 UvrD-helicase: UvrD/R 89.9 0.18 4E-06 49.4 2.1 29 60-90 3-31 (315)
234 PF13238 AAA_18: AAA domain; P 89.9 0.13 2.8E-06 43.3 0.9 20 75-94 1-20 (129)
235 TIGR01447 recD exodeoxyribonuc 89.9 0.24 5.1E-06 53.8 3.1 31 60-90 148-178 (586)
236 COG1122 CbiO ABC-type cobalt t 89.8 0.12 2.6E-06 49.4 0.7 46 224-269 167-216 (235)
237 COG5008 PilU Tfp pilus assembl 89.8 0.18 3.9E-06 48.5 1.8 29 216-244 226-254 (375)
238 TIGR02322 phosphon_PhnN phosph 89.7 0.15 3.3E-06 46.1 1.3 19 72-90 1-19 (179)
239 PRK08233 hypothetical protein; 89.7 0.14 3E-06 46.3 0.9 23 72-94 3-25 (182)
240 PF12775 AAA_7: P-loop contain 89.6 0.16 3.5E-06 49.6 1.5 22 69-90 30-51 (272)
241 KOG0388|consensus 89.6 3.1 6.6E-05 45.4 10.7 112 184-316 1042-1154(1185)
242 TIGR00235 udk uridine kinase. 89.5 0.14 2.9E-06 47.8 0.8 20 71-90 5-24 (207)
243 PF12846 AAA_10: AAA-like doma 89.4 0.16 3.5E-06 49.5 1.3 21 72-92 1-21 (304)
244 COG1120 FepC ABC-type cobalami 89.4 0.14 3.1E-06 49.4 0.8 22 69-90 25-46 (258)
245 PF00004 AAA: ATPase family as 89.4 0.15 3.3E-06 43.0 0.9 19 75-93 1-19 (132)
246 TIGR01166 cbiO cobalt transpor 89.4 0.14 3.1E-06 46.9 0.8 22 69-90 15-36 (190)
247 TIGR01448 recD_rel helicase, p 89.3 0.46 9.9E-06 52.9 4.9 37 54-90 320-356 (720)
248 TIGR03819 heli_sec_ATPase heli 89.3 0.31 6.7E-06 49.3 3.2 23 68-90 174-196 (340)
249 PRK10875 recD exonuclease V su 89.3 0.28 6.1E-06 53.4 3.0 31 60-90 155-185 (615)
250 PF03193 DUF258: Protein of un 89.2 0.26 5.7E-06 44.2 2.3 30 64-94 28-57 (161)
251 PRK09200 preprotein translocas 89.0 5.1 0.00011 44.9 12.6 29 216-250 147-176 (790)
252 PF07728 AAA_5: AAA domain (dy 89.0 0.18 3.8E-06 43.6 1.1 15 74-88 1-15 (139)
253 COG3910 Predicted ATPase [Gene 88.9 0.21 4.6E-06 45.7 1.6 34 55-90 22-55 (233)
254 TIGR01360 aden_kin_iso1 adenyl 88.9 0.2 4.3E-06 45.5 1.4 22 72-93 3-24 (188)
255 KOG1970|consensus 88.9 0.22 4.7E-06 52.5 1.8 29 71-99 109-137 (634)
256 cd03226 ABC_cobalt_CbiO_domain 88.9 0.16 3.5E-06 47.1 0.8 22 69-90 23-44 (205)
257 cd03292 ABC_FtsE_transporter F 88.9 0.16 3.5E-06 47.3 0.8 22 69-90 24-45 (214)
258 PF02367 UPF0079: Uncharacteri 88.8 0.23 5E-06 42.4 1.6 28 63-90 6-33 (123)
259 cd03269 ABC_putative_ATPase Th 88.8 0.17 3.6E-06 47.2 0.8 22 69-90 23-44 (210)
260 COG0563 Adk Adenylate kinase a 88.7 0.18 4E-06 46.0 1.0 21 74-94 2-22 (178)
261 cd00071 GMPK Guanosine monopho 88.7 0.18 3.9E-06 43.9 0.9 16 75-90 2-17 (137)
262 PRK15177 Vi polysaccharide exp 88.7 0.17 3.7E-06 47.5 0.8 22 69-90 10-31 (213)
263 PRK14530 adenylate kinase; Pro 88.7 0.19 4E-06 47.2 1.1 23 72-94 3-25 (215)
264 cd03255 ABC_MJ0796_Lo1CDE_FtsE 88.7 0.17 3.6E-06 47.5 0.7 22 69-90 27-48 (218)
265 PRK14722 flhF flagellar biosyn 88.6 0.19 4.1E-06 51.3 1.1 21 70-90 135-155 (374)
266 cd03258 ABC_MetN_methionine_tr 88.6 0.17 3.7E-06 47.9 0.8 22 69-90 28-49 (233)
267 PRK11747 dinG ATP-dependent DN 88.6 0.38 8.3E-06 53.4 3.6 27 64-90 36-69 (697)
268 PF03215 Rad17: Rad17 cell cyc 88.6 0.21 4.6E-06 53.2 1.6 26 72-97 45-70 (519)
269 PHA02244 ATPase-like protein 88.6 0.34 7.3E-06 49.3 2.9 29 61-89 108-136 (383)
270 PRK05703 flhF flagellar biosyn 88.6 0.89 1.9E-05 47.4 6.1 19 72-90 221-239 (424)
271 COG1110 Reverse gyrase [DNA re 88.5 0.58 1.3E-05 52.6 4.8 121 44-251 69-190 (1187)
272 PRK06526 transposase; Provisio 88.5 0.23 4.9E-06 48.1 1.6 23 68-90 94-116 (254)
273 cd03235 ABC_Metallic_Cations A 88.4 0.18 3.9E-06 47.0 0.8 22 69-90 22-43 (213)
274 PRK13541 cytochrome c biogenes 88.4 0.18 4E-06 46.4 0.8 22 69-90 23-44 (195)
275 PRK09183 transposase/IS protei 88.4 0.23 5E-06 48.2 1.5 22 69-90 99-120 (259)
276 cd03225 ABC_cobalt_CbiO_domain 88.4 0.17 3.8E-06 47.0 0.6 22 69-90 24-45 (211)
277 PRK05541 adenylylsulfate kinas 88.3 0.13 2.8E-06 46.5 -0.3 25 69-93 4-28 (176)
278 TIGR02315 ABC_phnC phosphonate 88.3 0.19 4E-06 48.0 0.8 22 69-90 25-46 (243)
279 cd03259 ABC_Carb_Solutes_like 88.3 0.19 4E-06 47.0 0.8 22 69-90 23-44 (213)
280 PRK07261 topology modulation p 88.3 0.2 4.3E-06 45.3 0.9 18 75-92 3-20 (171)
281 TIGR03608 L_ocin_972_ABC putat 88.2 0.18 3.9E-06 46.7 0.7 22 69-90 21-42 (206)
282 TIGR02673 FtsE cell division A 88.2 0.19 4.2E-06 46.8 0.8 22 69-90 25-46 (214)
283 cd03247 ABCC_cytochrome_bd The 88.2 0.19 4.1E-06 45.6 0.7 22 69-90 25-46 (178)
284 cd03224 ABC_TM1139_LivF_branch 88.1 0.18 4E-06 47.2 0.6 22 69-90 23-44 (222)
285 PLN02165 adenylate isopentenyl 88.1 0.23 5E-06 49.7 1.3 20 70-89 41-60 (334)
286 TIGR03015 pepcterm_ATPase puta 88.0 0.42 9.2E-06 46.1 3.1 21 72-92 43-63 (269)
287 COG1199 DinG Rad3-related DNA 88.0 0.51 1.1E-05 52.0 4.1 33 54-86 12-48 (654)
288 TIGR00376 DNA helicase, putati 87.9 0.39 8.5E-06 52.7 3.1 32 59-90 159-191 (637)
289 COG4136 ABC-type uncharacteriz 87.9 0.23 5E-06 43.9 1.0 25 69-93 25-49 (213)
290 cd03221 ABCF_EF-3 ABCF_EF-3 E 87.9 0.2 4.4E-06 43.9 0.7 22 69-90 23-44 (144)
291 cd03219 ABC_Mj1267_LivG_branch 87.9 0.21 4.5E-06 47.4 0.8 22 69-90 23-44 (236)
292 COG0513 SrmB Superfamily II DN 87.9 1.5 3.2E-05 47.0 7.3 72 189-265 102-179 (513)
293 TIGR01359 UMP_CMP_kin_fam UMP- 87.8 0.21 4.6E-06 45.2 0.8 23 74-96 1-23 (183)
294 cd03268 ABC_BcrA_bacitracin_re 87.8 0.2 4.4E-06 46.5 0.7 22 69-90 23-44 (208)
295 cd03230 ABC_DR_subfamily_A Thi 87.8 0.21 4.6E-06 45.0 0.8 22 69-90 23-44 (173)
296 PF03668 ATP_bind_2: P-loop AT 87.8 0.98 2.1E-05 44.2 5.4 73 73-147 2-92 (284)
297 TIGR00960 3a0501s02 Type II (G 87.8 0.21 4.5E-06 46.8 0.7 22 69-90 26-47 (216)
298 PRK14527 adenylate kinase; Pro 87.8 0.26 5.7E-06 45.2 1.4 25 71-95 5-29 (191)
299 PRK07246 bifunctional ATP-depe 87.8 0.44 9.5E-06 53.9 3.4 23 64-86 256-278 (820)
300 cd03261 ABC_Org_Solvent_Resist 87.7 0.21 4.5E-06 47.5 0.7 22 69-90 23-44 (235)
301 cd03293 ABC_NrtD_SsuB_transpor 87.7 0.19 4.2E-06 47.1 0.5 22 69-90 27-48 (220)
302 cd03246 ABCC_Protease_Secretio 87.7 0.21 4.5E-06 45.1 0.7 22 69-90 25-46 (173)
303 PRK13539 cytochrome c biogenes 87.7 0.21 4.6E-06 46.5 0.7 22 69-90 25-46 (207)
304 cd00227 CPT Chloramphenicol (C 87.7 0.27 5.9E-06 44.4 1.5 22 72-93 2-23 (175)
305 PRK11331 5-methylcytosine-spec 87.6 0.36 7.8E-06 50.3 2.4 28 62-89 184-211 (459)
306 cd03222 ABC_RNaseL_inhibitor T 87.6 0.18 4E-06 45.9 0.3 23 68-90 21-43 (177)
307 TIGR03864 PQQ_ABC_ATP ABC tran 87.6 0.21 4.6E-06 47.4 0.7 22 69-90 24-45 (236)
308 PRK10584 putative ABC transpor 87.6 0.22 4.7E-06 47.1 0.8 22 69-90 33-54 (228)
309 cd03301 ABC_MalK_N The N-termi 87.6 0.21 4.6E-06 46.5 0.7 22 69-90 23-44 (213)
310 cd03229 ABC_Class3 This class 87.6 0.22 4.7E-06 45.2 0.7 22 69-90 23-44 (178)
311 PF06862 DUF1253: Protein of u 87.6 2.4 5.2E-05 44.2 8.4 83 184-275 298-385 (442)
312 cd03265 ABC_DrrA DrrA is the A 87.6 0.22 4.7E-06 46.8 0.8 22 69-90 23-44 (220)
313 PRK14242 phosphate transporter 87.5 0.21 4.6E-06 47.9 0.7 22 69-90 29-50 (253)
314 cd02019 NK Nucleoside/nucleoti 87.5 0.24 5.2E-06 37.6 0.8 17 74-90 1-17 (69)
315 PRK12402 replication factor C 87.5 0.46 1E-05 47.4 3.1 28 62-89 24-53 (337)
316 PRK14729 miaA tRNA delta(2)-is 87.5 0.29 6.3E-06 48.4 1.6 17 71-87 3-19 (300)
317 TIGR01650 PD_CobS cobaltochela 87.5 0.41 9E-06 47.8 2.7 30 64-93 56-85 (327)
318 cd03260 ABC_PstB_phosphate_tra 87.4 0.22 4.8E-06 47.0 0.7 22 69-90 23-44 (227)
319 TIGR01978 sufC FeS assembly AT 87.4 0.23 5.1E-06 47.2 0.9 22 69-90 23-44 (243)
320 PRK08074 bifunctional ATP-depe 87.4 0.5 1.1E-05 54.3 3.6 27 64-90 268-296 (928)
321 TIGR02211 LolD_lipo_ex lipopro 87.3 0.23 4.9E-06 46.6 0.7 22 69-90 28-49 (221)
322 cd03223 ABCD_peroxisomal_ALDP 87.3 0.24 5.1E-06 44.5 0.8 22 69-90 24-45 (166)
323 cd03262 ABC_HisP_GlnQ_permease 87.3 0.23 5E-06 46.2 0.8 22 69-90 23-44 (213)
324 cd03237 ABC_RNaseL_inhibitor_d 87.2 0.25 5.3E-06 47.6 0.9 22 69-90 22-43 (246)
325 PRK14531 adenylate kinase; Pro 87.2 0.28 6E-06 44.8 1.2 23 73-95 3-25 (183)
326 PRK00698 tmk thymidylate kinas 87.2 0.28 6E-06 45.2 1.2 24 71-94 2-25 (205)
327 PRK10247 putative ABC transpor 87.2 0.24 5.2E-06 46.8 0.8 22 69-90 30-51 (225)
328 cd03266 ABC_NatA_sodium_export 87.1 0.24 5.2E-06 46.3 0.8 22 69-90 28-49 (218)
329 COG3842 PotA ABC-type spermidi 87.1 0.25 5.4E-06 49.9 0.9 22 69-90 28-49 (352)
330 PRK12727 flagellar biosynthesi 87.1 1.3 2.9E-05 47.1 6.3 22 69-90 347-368 (559)
331 PRK13543 cytochrome c biogenes 87.1 0.23 5E-06 46.5 0.7 22 69-90 34-55 (214)
332 PRK14247 phosphate ABC transpo 87.1 0.23 5.1E-06 47.6 0.7 22 69-90 26-47 (250)
333 PRK10908 cell division protein 87.1 0.24 5.3E-06 46.5 0.8 22 69-90 25-46 (222)
334 cd03256 ABC_PhnC_transporter A 87.1 0.24 5.3E-06 47.0 0.8 22 69-90 24-45 (241)
335 cd03257 ABC_NikE_OppD_transpor 87.1 0.25 5.3E-06 46.5 0.8 22 69-90 28-49 (228)
336 cd03279 ABC_sbcCD SbcCD and ot 87.0 0.31 6.7E-06 45.6 1.5 20 71-90 27-46 (213)
337 KOG1803|consensus 87.0 0.58 1.3E-05 49.8 3.6 31 60-90 188-219 (649)
338 cd03298 ABC_ThiQ_thiamine_tran 87.0 0.24 5.3E-06 46.1 0.7 22 69-90 21-42 (211)
339 COG1127 Ttg2A ABC-type transpo 86.9 0.96 2.1E-05 43.1 4.6 22 69-90 31-52 (263)
340 cd03218 ABC_YhbG The ABC trans 86.9 0.25 5.5E-06 46.7 0.8 22 69-90 23-44 (232)
341 cd00267 ABC_ATPase ABC (ATP-bi 86.9 0.26 5.6E-06 43.6 0.8 22 69-90 22-43 (157)
342 PRK11248 tauB taurine transpor 86.8 0.25 5.4E-06 47.7 0.7 22 69-90 24-45 (255)
343 PRK14262 phosphate ABC transpo 86.8 0.27 5.9E-06 47.1 1.0 22 69-90 26-47 (250)
344 PRK10744 pstB phosphate transp 86.7 0.26 5.7E-06 47.6 0.8 22 69-90 36-57 (260)
345 TIGR03410 urea_trans_UrtE urea 86.7 0.26 5.6E-06 46.6 0.8 22 69-90 23-44 (230)
346 cd03245 ABCC_bacteriocin_expor 86.7 0.26 5.6E-06 46.2 0.7 22 69-90 27-48 (220)
347 cd03283 ABC_MutS-like MutS-lik 86.7 0.27 5.9E-06 45.6 0.9 20 71-90 24-43 (199)
348 PRK11629 lolD lipoprotein tran 86.7 0.26 5.6E-06 46.7 0.7 22 69-90 32-53 (233)
349 cd03296 ABC_CysA_sulfate_impor 86.7 0.26 5.7E-06 46.9 0.8 22 69-90 25-46 (239)
350 PRK08118 topology modulation p 86.7 0.28 6.1E-06 44.2 0.9 21 74-94 3-23 (167)
351 TIGR02324 CP_lyasePhnL phospho 86.7 0.26 5.6E-06 46.4 0.7 22 69-90 31-52 (224)
352 PRK09825 idnK D-gluconate kina 86.6 0.3 6.5E-06 44.4 1.1 20 71-90 2-21 (176)
353 PRK13538 cytochrome c biogenes 86.6 0.25 5.5E-06 45.8 0.6 22 69-90 24-45 (204)
354 cd03214 ABC_Iron-Siderophores_ 86.6 0.26 5.7E-06 44.8 0.7 22 69-90 22-43 (180)
355 TIGR02770 nickel_nikD nickel i 86.6 0.27 5.9E-06 46.5 0.8 22 69-90 9-30 (230)
356 TIGR02323 CP_lyasePhnK phospho 86.5 0.26 5.7E-06 47.3 0.7 22 69-90 26-47 (253)
357 cd03232 ABC_PDR_domain2 The pl 86.5 0.25 5.4E-06 45.4 0.5 22 69-90 30-51 (192)
358 cd03216 ABC_Carb_Monos_I This 86.5 0.27 5.9E-06 44.0 0.7 22 69-90 23-44 (163)
359 TIGR01189 ccmA heme ABC export 86.5 0.26 5.7E-06 45.4 0.7 22 69-90 23-44 (198)
360 PRK11124 artP arginine transpo 86.4 0.28 6E-06 46.8 0.8 22 69-90 25-46 (242)
361 COG1135 AbcC ABC-type metal io 86.4 2.5 5.4E-05 41.8 7.3 22 69-90 29-50 (339)
362 cd03228 ABCC_MRP_Like The MRP 86.4 0.28 6E-06 44.2 0.7 22 69-90 25-46 (171)
363 cd03263 ABC_subfamily_A The AB 86.3 0.28 6.1E-06 45.9 0.8 22 69-90 25-46 (220)
364 cd03254 ABCC_Glucan_exporter_l 86.3 0.28 6.1E-06 46.2 0.8 22 69-90 26-47 (229)
365 TIGR00972 3a0107s01c2 phosphat 86.3 0.28 6.1E-06 47.0 0.8 22 69-90 24-45 (247)
366 TIGR01184 ntrCD nitrate transp 86.3 0.29 6.3E-06 46.4 0.8 22 69-90 8-29 (230)
367 PRK13540 cytochrome c biogenes 86.2 0.28 6E-06 45.4 0.7 22 69-90 24-45 (200)
368 PRK13646 cbiO cobalt transport 86.2 0.28 6.1E-06 48.2 0.7 22 69-90 30-51 (286)
369 PRK05480 uridine/cytidine kina 86.2 0.32 6.9E-06 45.3 1.1 20 71-90 5-24 (209)
370 cd01363 Motor_domain Myosin an 86.2 0.81 1.8E-05 41.9 3.8 32 57-88 7-40 (186)
371 cd03215 ABC_Carb_Monos_II This 86.2 0.29 6.3E-06 44.5 0.8 22 69-90 23-44 (182)
372 PRK14248 phosphate ABC transpo 86.1 0.29 6.2E-06 47.6 0.7 22 69-90 44-65 (268)
373 cd03270 ABC_UvrA_I The excisio 86.1 0.31 6.7E-06 46.2 0.9 21 69-89 18-38 (226)
374 cd03233 ABC_PDR_domain1 The pl 86.1 0.27 5.9E-06 45.6 0.5 22 69-90 30-51 (202)
375 PF01695 IstB_IS21: IstB-like 86.1 0.4 8.6E-06 43.7 1.6 24 67-90 42-65 (178)
376 TIGR00041 DTMP_kinase thymidyl 86.0 0.34 7.4E-06 44.4 1.2 23 72-94 3-25 (195)
377 PRK14738 gmk guanylate kinase; 86.0 0.35 7.5E-06 45.2 1.2 19 71-89 12-30 (206)
378 PRK14273 phosphate ABC transpo 86.0 0.3 6.6E-06 46.9 0.8 22 69-90 30-51 (254)
379 PRK10917 ATP-dependent DNA hel 86.0 1.3 2.9E-05 49.1 5.9 79 185-265 309-388 (681)
380 PRK13104 secA preprotein trans 86.0 8.1 0.00017 43.8 11.9 35 52-86 75-109 (896)
381 PRK11247 ssuB aliphatic sulfon 86.0 0.31 6.7E-06 47.2 0.9 22 69-90 35-56 (257)
382 PRK14239 phosphate transporter 85.8 0.31 6.8E-06 46.7 0.8 22 69-90 28-49 (252)
383 TIGR02868 CydC thiol reductant 85.8 0.3 6.5E-06 52.3 0.7 22 69-90 358-379 (529)
384 KOG0060|consensus 85.7 0.36 7.9E-06 51.2 1.3 21 69-89 458-478 (659)
385 COG1102 Cmk Cytidylate kinase 85.7 0.51 1.1E-05 42.2 2.0 37 74-110 2-38 (179)
386 PRK11264 putative amino-acid A 85.7 0.32 6.9E-06 46.6 0.8 22 69-90 26-47 (250)
387 PRK14250 phosphate ABC transpo 85.7 0.32 7E-06 46.4 0.8 22 69-90 26-47 (241)
388 PRK13632 cbiO cobalt transport 85.6 0.31 6.7E-06 47.5 0.7 22 69-90 32-53 (271)
389 PRK13548 hmuV hemin importer A 85.6 0.33 7.1E-06 46.9 0.8 22 69-90 25-46 (258)
390 cd03295 ABC_OpuCA_Osmoprotecti 85.6 0.31 6.8E-06 46.5 0.7 22 69-90 24-45 (242)
391 COG4133 CcmA ABC-type transpor 85.5 0.34 7.5E-06 44.4 0.9 22 69-90 25-46 (209)
392 PF13476 AAA_23: AAA domain; P 85.5 0.33 7.2E-06 44.1 0.8 20 71-90 18-37 (202)
393 PRK14237 phosphate transporter 85.5 0.32 7E-06 47.2 0.7 22 69-90 43-64 (267)
394 cd03294 ABC_Pro_Gly_Bertaine T 85.5 0.33 7.2E-06 47.2 0.8 22 69-90 47-68 (269)
395 KOG0347|consensus 85.4 1.6 3.5E-05 46.1 5.7 57 188-250 265-321 (731)
396 PRK06762 hypothetical protein; 85.4 0.36 7.9E-06 43.0 1.0 24 73-96 3-26 (166)
397 PRK00131 aroK shikimate kinase 85.4 0.38 8.2E-06 42.9 1.1 23 71-93 3-25 (175)
398 PRK13638 cbiO cobalt transport 85.4 0.33 7.1E-06 47.3 0.7 22 69-90 24-45 (271)
399 PRK13648 cbiO cobalt transport 85.3 0.34 7.3E-06 47.1 0.8 22 69-90 32-53 (269)
400 COG4152 ABC-type uncharacteriz 85.3 3.3 7.3E-05 39.7 7.3 70 184-266 177-248 (300)
401 cd03250 ABCC_MRP_domain1 Domai 85.3 0.34 7.3E-06 44.9 0.7 22 69-90 28-49 (204)
402 cd03252 ABCC_Hemolysin The ABC 85.2 0.35 7.5E-06 45.9 0.8 22 69-90 25-46 (237)
403 cd03249 ABC_MTABC3_MDL1_MDL2 M 85.2 0.35 7.5E-06 46.0 0.8 22 69-90 26-47 (238)
404 cd03213 ABCG_EPDR ABCG transpo 85.2 0.34 7.3E-06 44.7 0.7 22 69-90 32-53 (194)
405 KOG1533|consensus 85.2 0.49 1.1E-05 44.8 1.8 26 75-100 5-33 (290)
406 PRK14240 phosphate transporter 85.2 0.35 7.5E-06 46.4 0.8 22 69-90 26-47 (250)
407 PRK14269 phosphate ABC transpo 85.2 0.34 7.3E-06 46.4 0.7 22 69-90 25-46 (246)
408 PRK14259 phosphate ABC transpo 85.2 0.35 7.5E-06 47.1 0.8 22 69-90 36-57 (269)
409 PRK09493 glnQ glutamine ABC tr 85.2 0.35 7.5E-06 46.1 0.8 22 69-90 24-45 (240)
410 PRK14737 gmk guanylate kinase; 85.1 0.41 8.8E-06 44.0 1.2 19 71-89 3-21 (186)
411 PRK09544 znuC high-affinity zi 85.1 0.34 7.4E-06 46.7 0.7 22 69-90 27-48 (251)
412 cd03369 ABCC_NFT1 Domain 2 of 85.1 0.34 7.4E-06 45.0 0.7 22 69-90 31-52 (207)
413 cd01120 RecA-like_NTPases RecA 85.1 0.36 7.7E-06 42.1 0.8 17 74-90 1-17 (165)
414 PRK14244 phosphate ABC transpo 85.1 0.35 7.5E-06 46.4 0.7 22 69-90 28-49 (251)
415 PRK03695 vitamin B12-transport 85.0 0.34 7.5E-06 46.5 0.7 22 69-90 19-40 (248)
416 cd03253 ABCC_ATM1_transporter 85.0 0.35 7.5E-06 45.9 0.7 22 69-90 24-45 (236)
417 PRK14274 phosphate ABC transpo 85.0 0.35 7.6E-06 46.7 0.7 22 69-90 35-56 (259)
418 cd02023 UMPK Uridine monophosp 84.9 0.36 7.9E-06 44.4 0.8 17 74-90 1-17 (198)
419 PRK10771 thiQ thiamine transpo 84.9 0.36 7.8E-06 45.7 0.8 22 69-90 22-43 (232)
420 PRK14532 adenylate kinase; Pro 84.9 0.42 9E-06 43.6 1.2 23 74-96 2-24 (188)
421 PRK14256 phosphate ABC transpo 84.9 0.37 7.9E-06 46.3 0.8 22 69-90 27-48 (252)
422 PRK14255 phosphate ABC transpo 84.9 0.37 7.9E-06 46.3 0.8 22 69-90 28-49 (252)
423 cd03243 ABC_MutS_homologs The 84.9 0.37 8.1E-06 44.7 0.9 21 70-90 27-47 (202)
424 PRK13547 hmuV hemin importer A 84.9 0.37 7.9E-06 47.1 0.8 22 69-90 24-45 (272)
425 COG4619 ABC-type uncharacteriz 84.8 0.33 7.2E-06 43.7 0.4 22 69-90 26-47 (223)
426 PF01078 Mg_chelatase: Magnesi 84.8 0.77 1.7E-05 42.8 2.9 26 63-88 13-38 (206)
427 cd03234 ABCG_White The White s 84.8 0.35 7.7E-06 45.6 0.7 22 69-90 30-51 (226)
428 PRK14267 phosphate ABC transpo 84.8 0.37 7.9E-06 46.3 0.8 22 69-90 27-48 (253)
429 cd03267 ABC_NatA_like Similar 84.8 0.38 8.2E-06 45.8 0.9 22 69-90 44-65 (236)
430 PRK14241 phosphate transporter 84.8 0.37 8E-06 46.5 0.8 22 69-90 27-48 (258)
431 PF10662 PduV-EutP: Ethanolami 84.8 0.4 8.6E-06 42.1 0.9 18 75-92 4-21 (143)
432 PRK11300 livG leucine/isoleuci 84.8 0.36 7.9E-06 46.4 0.7 22 69-90 28-49 (255)
433 PF08477 Miro: Miro-like prote 84.7 0.41 8.8E-06 39.7 0.9 16 75-90 2-17 (119)
434 TIGR01313 therm_gnt_kin carboh 84.7 0.33 7.1E-06 43.2 0.4 16 75-90 1-16 (163)
435 PRK14261 phosphate ABC transpo 84.7 0.36 7.7E-06 46.4 0.6 22 69-90 29-50 (253)
436 TIGR03740 galliderm_ABC gallid 84.7 0.38 8.1E-06 45.3 0.8 22 69-90 23-44 (223)
437 TIGR02858 spore_III_AA stage I 84.7 0.73 1.6E-05 45.0 2.8 18 73-90 112-129 (270)
438 PRK15056 manganese/iron transp 84.7 0.37 7.9E-06 47.0 0.7 22 69-90 30-51 (272)
439 smart00763 AAA_PrkA PrkA AAA d 84.7 0.84 1.8E-05 46.2 3.3 19 72-90 78-96 (361)
440 PRK08356 hypothetical protein; 84.7 0.42 9.1E-06 44.1 1.1 20 73-92 6-25 (195)
441 cd03290 ABCC_SUR1_N The SUR do 84.7 0.38 8.3E-06 45.0 0.8 22 69-90 24-45 (218)
442 TIGR02881 spore_V_K stage V sp 84.7 1 2.3E-05 43.5 3.9 18 72-89 42-59 (261)
443 PRK08181 transposase; Validate 84.7 0.56 1.2E-05 45.8 2.0 23 68-90 102-124 (269)
444 PRK13645 cbiO cobalt transport 84.7 0.35 7.6E-06 47.6 0.6 22 69-90 34-55 (289)
445 PRK04296 thymidine kinase; Pro 84.6 0.38 8.1E-06 44.3 0.7 18 72-89 2-19 (190)
446 PRK11614 livF leucine/isoleuci 84.6 0.38 8.2E-06 45.7 0.8 22 69-90 28-49 (237)
447 PRK06217 hypothetical protein; 84.6 0.4 8.6E-06 43.7 0.9 17 74-90 3-19 (183)
448 PRK14235 phosphate transporter 84.6 0.38 8.3E-06 46.7 0.8 22 69-90 42-63 (267)
449 PRK14528 adenylate kinase; Pro 84.6 0.45 9.7E-06 43.6 1.2 21 73-93 2-22 (186)
450 TIGR03420 DnaA_homol_Hda DnaA 84.5 0.47 1E-05 44.4 1.4 20 70-89 36-55 (226)
451 PRK14245 phosphate ABC transpo 84.5 0.38 8.1E-06 46.2 0.7 22 69-90 26-47 (250)
452 TIGR01277 thiQ thiamine ABC tr 84.5 0.35 7.6E-06 45.1 0.5 22 69-90 21-42 (213)
453 PRK13649 cbiO cobalt transport 84.5 0.38 8.3E-06 47.0 0.8 22 69-90 30-51 (280)
454 PRK14253 phosphate ABC transpo 84.4 0.4 8.7E-06 45.9 0.9 22 69-90 26-47 (249)
455 PRK11231 fecE iron-dicitrate t 84.4 0.39 8.4E-06 46.3 0.7 22 69-90 25-46 (255)
456 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 84.4 0.39 8.4E-06 45.4 0.7 22 69-90 45-66 (224)
457 cd02020 CMPK Cytidine monophos 84.4 0.43 9.3E-06 41.2 0.9 21 74-94 1-21 (147)
458 PRK11701 phnK phosphonate C-P 84.4 0.38 8.3E-06 46.4 0.7 22 69-90 29-50 (258)
459 TIGR03771 anch_rpt_ABC anchore 84.4 0.43 9.3E-06 45.0 1.0 22 69-90 3-24 (223)
460 PRK10895 lipopolysaccharide AB 84.4 0.39 8.4E-06 45.8 0.7 22 69-90 26-47 (241)
461 COG1219 ClpX ATP-dependent pro 84.3 0.45 9.8E-06 47.0 1.2 16 71-86 96-111 (408)
462 PRK11831 putative ABC transpor 84.3 0.39 8.4E-06 46.7 0.7 22 69-90 30-51 (269)
463 cd03251 ABCC_MsbA MsbA is an e 84.3 0.4 8.7E-06 45.4 0.8 22 69-90 25-46 (234)
464 COG3973 Superfamily I DNA and 84.3 2 4.3E-05 46.0 5.9 49 40-94 200-252 (747)
465 TIGR03714 secA2 accessory Sec 84.3 1.2 2.7E-05 49.4 4.6 37 52-88 63-99 (762)
466 PRK14238 phosphate transporter 84.3 0.39 8.4E-06 46.8 0.7 22 69-90 47-68 (271)
467 PRK09984 phosphonate/organopho 84.3 0.4 8.6E-06 46.4 0.8 22 69-90 27-48 (262)
468 PRK10253 iron-enterobactin tra 84.2 0.39 8.4E-06 46.6 0.7 22 69-90 30-51 (265)
469 PRK13975 thymidylate kinase; P 84.2 0.47 1E-05 43.5 1.2 24 72-95 2-25 (196)
470 cd03248 ABCC_TAP TAP, the Tran 84.2 0.41 8.9E-06 45.1 0.8 22 69-90 37-58 (226)
471 cd03264 ABC_drug_resistance_li 84.1 0.37 7.9E-06 44.9 0.4 20 70-90 24-43 (211)
472 cd03289 ABCC_CFTR2 The CFTR su 84.1 0.4 8.6E-06 47.0 0.7 22 69-90 27-48 (275)
473 PRK14268 phosphate ABC transpo 84.1 0.41 8.9E-06 46.2 0.8 22 69-90 35-56 (258)
474 CHL00131 ycf16 sulfate ABC tra 84.1 0.41 9E-06 45.9 0.8 22 69-90 30-51 (252)
475 PRK07667 uridine kinase; Provi 84.1 0.78 1.7E-05 42.3 2.6 16 74-89 19-34 (193)
476 PRK09087 hypothetical protein; 84.0 0.77 1.7E-05 43.6 2.6 19 72-90 44-62 (226)
477 PRK06995 flhF flagellar biosyn 84.0 0.44 9.5E-06 50.3 1.0 20 71-90 255-274 (484)
478 PRK10575 iron-hydroxamate tran 84.0 0.41 8.9E-06 46.4 0.7 22 69-90 34-55 (265)
479 PRK14265 phosphate ABC transpo 84.0 0.42 9.1E-06 46.7 0.8 22 69-90 43-64 (274)
480 PRK14251 phosphate ABC transpo 84.0 0.42 9.2E-06 45.8 0.8 22 69-90 27-48 (251)
481 PRK13651 cobalt transporter AT 84.0 0.39 8.4E-06 47.8 0.6 22 69-90 30-51 (305)
482 PRK15112 antimicrobial peptide 84.0 0.43 9.4E-06 46.3 0.9 22 69-90 36-57 (267)
483 TIGR02769 nickel_nikE nickel i 83.9 0.42 9E-06 46.4 0.7 22 69-90 34-55 (265)
484 TIGR03411 urea_trans_UrtD urea 83.9 0.42 9.1E-06 45.5 0.7 22 69-90 25-46 (242)
485 PRK13635 cbiO cobalt transport 83.9 0.41 9E-06 46.8 0.7 22 69-90 30-51 (279)
486 PRK13650 cbiO cobalt transport 83.9 0.4 8.7E-06 46.9 0.6 22 69-90 30-51 (279)
487 cd04163 Era Era subfamily. Er 83.8 0.5 1.1E-05 41.0 1.2 18 73-90 4-21 (168)
488 PRK13643 cbiO cobalt transport 83.8 0.4 8.7E-06 47.2 0.6 22 69-90 29-50 (288)
489 TIGR00968 3a0106s01 sulfate AB 83.8 0.43 9.4E-06 45.4 0.8 22 69-90 23-44 (237)
490 PRK10619 histidine/lysine/argi 83.8 0.43 9.4E-06 46.0 0.8 22 69-90 28-49 (257)
491 PRK14257 phosphate ABC transpo 83.8 0.42 9.1E-06 48.1 0.7 69 194-270 228-302 (329)
492 PRK10751 molybdopterin-guanine 83.8 0.44 9.6E-06 43.3 0.8 18 73-90 7-24 (173)
493 cd03231 ABC_CcmA_heme_exporter 83.8 0.44 9.5E-06 44.1 0.8 22 69-90 23-44 (201)
494 cd03244 ABCC_MRP_domain2 Domai 83.7 0.43 9.4E-06 44.7 0.8 22 69-90 27-48 (221)
495 PRK13633 cobalt transporter AT 83.7 0.44 9.6E-06 46.6 0.8 22 69-90 33-54 (280)
496 PRK03839 putative kinase; Prov 83.7 0.49 1.1E-05 42.9 1.1 21 74-94 2-22 (180)
497 TIGR02768 TraA_Ti Ti-type conj 83.7 0.87 1.9E-05 51.0 3.2 35 56-90 351-386 (744)
498 PRK14249 phosphate ABC transpo 83.7 0.43 9.4E-06 45.8 0.7 22 69-90 27-48 (251)
499 PRK01184 hypothetical protein; 83.6 0.5 1.1E-05 43.0 1.1 23 74-97 3-25 (184)
500 PF01926 MMR_HSR1: 50S ribosom 83.6 0.47 1E-05 39.5 0.9 19 75-93 2-20 (116)
No 1
>KOG0923|consensus
Probab=100.00 E-value=2.9e-93 Score=721.73 Aligned_cols=392 Identities=28% Similarity=0.402 Sum_probs=354.9
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh-----------------------------
Q psy6094 45 RYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL----------------------------- 94 (455)
Q Consensus 45 ~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~----------------------------- 94 (455)
+-.++.+.|+.||+|.++++++.+|.++||+||.|+||||||||+| ||.+
T Consensus 253 ~~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~ 332 (902)
T KOG0923|consen 253 RRESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAE 332 (902)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHH
Confidence 4556778899999999999999999999999999999999999999 9987
Q ss_pred hh----cCCCCC-hH-----------------HHHHhc-cCCCCcCcc-------------hHHHHHHHHHHHHhcCCCC
Q psy6094 95 KR----SETQQY-PN-----------------DVLNML-KDPELEGVN-------------NDVIFSLLQHICTTQRPGA 138 (455)
Q Consensus 95 e~----~~~vg~-p~-----------------~ll~~l-~d~~L~~~~-------------~D~ll~~lk~il~~~~~~~ 138 (455)
|+ |..||| +| -|||++ .+|+|..|+ +|+|++++|++. +.||++
T Consensus 333 EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIa-r~RpdL 411 (902)
T KOG0923|consen 333 EMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIA-RFRPDL 411 (902)
T ss_pred HhCcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHH-hhCCcc
Confidence 22 223332 11 189998 999999999 999999999999 999999
Q ss_pred eEEEEccCC-----------------CCC-ccceEEeehhhhhhhhccCCCCChHHHHHHHHccCCCCEEEEcCCHHHHH
Q psy6094 139 ILVYCTYTF-----------------MGV-SPMKVFFCKNVLQRLMKGVGANSPKRWVKLLRSMLVVPILVFLPGWDTIN 200 (455)
Q Consensus 139 k~ilmSAT~-----------------~g~-~pv~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~~g~iLVFlp~~~ei~ 200 (455)
|++++|||+ ||+ |||+++|.+.+.-+|+.....+ .+..|+. .+.|+||||++|+++|+
T Consensus 412 KllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~t---VlqIH~t-qp~GDILVFltGQeEIE 487 (902)
T KOG0923|consen 412 KLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVT---VLQIHLT-QPLGDILVFLTGQEEIE 487 (902)
T ss_pred eEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhh---heeeEec-cCCccEEEEeccHHHHH
Confidence 999999999 999 9999999988877776544321 2333333 77899999999999999
Q ss_pred HHHHHHHhcCCC---CCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCccccccc
Q psy6094 201 SLHRSMCQSSFF---NSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDV 277 (455)
Q Consensus 201 ~l~~~L~~~~~~---~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~ 277 (455)
.+.+.|.+.... ....+.++|+|+.||.+.|.+||++.|+|.||||+|||||||||||+||.||||+|++|++.|||
T Consensus 488 t~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynp 567 (902)
T KOG0923|consen 488 TVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNP 567 (902)
T ss_pred HHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCC
Confidence 999888865322 34578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccchhhHHhhhcccCCCCCCeEEecCC----hhhhccCCCCcccccC-hHHHHHHHh---------hhcC
Q psy6094 278 KDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYP----NDVLNMLKDPELEGVN-NDVIFSLLQ---------HICT 343 (455)
Q Consensus 278 ~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t----~~~~~~~~~PEi~r~~-~~~~L~~l~---------~~~~ 343 (455)
++||+.|..+|||||+|.||+|||||+|||+|||||| ..+++..+.|||+|.| ..++|.+++ +|++
T Consensus 568 rtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmD 647 (902)
T KOG0923|consen 568 RTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLD 647 (902)
T ss_pred CcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhcccccCC
Confidence 9999999999999999999999999999999999999 5678899999999999 999997765 8999
Q ss_pred CCChhhHHhHHhhhhhcccccCCCCCCcccCChHHHHHhhCCCCh---------------hHHHHHHHhhc-----CcCC
Q psy6094 344 TQRPGAILVFLPGWDTINSLHRSMCQSSFFNSCLLYEFAMVDNKP---------------KEIITVRDCLS-----FECK 403 (455)
Q Consensus 344 ~P~~~~i~~al~~L~~lgald~~~~l~~~~~T~lG~~l~~lp~~p---------------~~~l~iaa~ls-----f~~p 403 (455)
||+.+++..||+.|+.||||+..|+| |.+|+.|++||+|| ++|++|||||| |+.|
T Consensus 648 pPp~etL~~aLE~LyaLGALn~~GeL-----Tk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrp 722 (902)
T KOG0923|consen 648 PPPTETLLKALEQLYALGALNHLGEL-----TKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRP 722 (902)
T ss_pred CCChHHHHHHHHHHHHhhccccccch-----hhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecc
Confidence 99999999999999999999999999 99999999999999 79999999999 8899
Q ss_pred cChHHHHHHHHhhhC-CCCcHHHHHHHHHHHhcCCCCchHhHHHhh
Q psy6094 404 PSTAKIIKELRARLD-MLLAHKLSHPGTTAWGDPNEGNILHCCSGF 448 (455)
Q Consensus 404 ~~~~~~~~~~~~~~~-~~sD~~~~~~~~~~~~~~~~~~~~~~c~~~ 448 (455)
.++.-.++.+++.|. +.|||++++++|++|...+.+ .+||.++
T Consensus 723 k~~~v~ad~a~~~f~~~~gDhi~~L~vyn~w~es~~s--~~wC~e~ 766 (902)
T KOG0923|consen 723 KDKQVHADNARKNFEEPVGDHIVLLNVYNQWKESKYS--TQWCYEN 766 (902)
T ss_pred hhhhhhhhhhhhccCCCCcchhhhhHHHHHHhhcchh--hHHHHHh
Confidence 999999999999999 999999999999999999886 8999873
No 2
>KOG0922|consensus
Probab=100.00 E-value=3.1e-91 Score=714.48 Aligned_cols=395 Identities=28% Similarity=0.380 Sum_probs=352.8
Q ss_pred cCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh--------------------------
Q psy6094 42 QSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL-------------------------- 94 (455)
Q Consensus 42 ~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~-------------------------- 94 (455)
......++.++|+.||+|+++++|+.++++|+++||.|+||||||||+| |+++
T Consensus 36 ~~~~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RV 115 (674)
T KOG0922|consen 36 GKSTNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRV 115 (674)
T ss_pred ccccccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHH
Confidence 4456677889999999999999999999999999999999999999999 8877
Q ss_pred --h----hcCCCCC-hH-----------------HHHHhc-cCCCCcCcc-------------hHHHHHHHHHHHHhcCC
Q psy6094 95 --K----RSETQQY-PN-----------------DVLNML-KDPELEGVN-------------NDVIFSLLQHICTTQRP 136 (455)
Q Consensus 95 --e----~~~~vg~-p~-----------------~ll~~l-~d~~L~~~~-------------~D~ll~~lk~il~~~~~ 136 (455)
| .|+.||| .| -|||++ .||.|+.|+ ||+||++||+++ +.|+
T Consensus 116 AeE~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~-~~R~ 194 (674)
T KOG0922|consen 116 AEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKIL-KKRP 194 (674)
T ss_pred HHHhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHH-hcCC
Confidence 2 2344443 11 199999 999999999 999999999999 9999
Q ss_pred CCeEEEEccCC-----------------CCC-ccceEEeehhhhhhhhccCCCCChHHHHHHHHccCCCCEEEEcCCHHH
Q psy6094 137 GAILVYCTYTF-----------------MGV-SPMKVFFCKNVLQRLMKGVGANSPKRWVKLLRSMLVVPILVFLPGWDT 198 (455)
Q Consensus 137 ~~k~ilmSAT~-----------------~g~-~pv~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~~g~iLVFlp~~~e 198 (455)
++|+|+||||+ +|| |||+++|++.+..+|+..... ..+..|.. .++|+|||||+|++|
T Consensus 195 ~LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~---tv~~Ih~~-E~~GDILvFLtGqeE 270 (674)
T KOG0922|consen 195 DLKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALI---TVIQIHLT-EPPGDILVFLTGQEE 270 (674)
T ss_pred CceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHH---HHHHHHcc-CCCCCEEEEeCCHHH
Confidence 99999999999 899 999999999887777643321 11223333 889999999999999
Q ss_pred HHHHHHHHHhcCCCC--CCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccc
Q psy6094 199 INSLHRSMCQSSFFN--SSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFD 276 (455)
Q Consensus 199 i~~l~~~L~~~~~~~--~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd 276 (455)
|+.+++.|.+..... .....++|+||.||.++|.+||.+.|.|.||||+||||||||||||+|.||||+|++|.+.||
T Consensus 271 Ie~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~ 350 (674)
T KOG0922|consen 271 IEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYN 350 (674)
T ss_pred HHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeec
Confidence 999999999764321 112378999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccccchhhHHhhhcccCCCCCCeEEecCChh---hhccCCCCcccccC-hHHHHHHHh---------hhcC
Q psy6094 277 VKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPND---VLNMLKDPELEGVN-NDVIFSLLQ---------HICT 343 (455)
Q Consensus 277 ~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~---~~~~~~~PEi~r~~-~~~~L~~l~---------~~~~ 343 (455)
+++|++.|..+||||++|.||+|||||++||+|||||+++ .|++.+.|||+|++ ...+|++++ +|++
T Consensus 351 p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d 430 (674)
T KOG0922|consen 351 PRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRFPFID 430 (674)
T ss_pred cccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhcccCCCCceeeechHHHHHHHHhcCCCCcccCCCCC
Confidence 9999999999999999999999999999999999999965 45678899999999 999998876 7999
Q ss_pred CCChhhHHhHHhhhhhcccccCCCCCCcccCCh-HHHHHhhCCCCh---------------hHHHHHHHhhc----CcCC
Q psy6094 344 TQRPGAILVFLPGWDTINSLHRSMCQSSFFNSC-LLYEFAMVDNKP---------------KEIITVRDCLS----FECK 403 (455)
Q Consensus 344 ~P~~~~i~~al~~L~~lgald~~~~l~~~~~T~-lG~~l~~lp~~p---------------~~~l~iaa~ls----f~~p 403 (455)
||+++++..|++.|..+||||++|.+ |. +|+.|+.||++| +++++|||+|| |..|
T Consensus 431 ~P~~~~l~~AL~~L~~lgald~~g~l-----t~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p 505 (674)
T KOG0922|consen 431 PPPPEALEEALEELYSLGALDDRGKL-----TSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRP 505 (674)
T ss_pred CCChHHHHHHHHHHHhcCcccCcCCc-----CchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecCc
Confidence 99999999999999999999999999 87 999999999999 89999999999 8889
Q ss_pred cChHHH-HHHHHhhhC-CCCcHHHHHHHHHHHhcCCCCchHhHHHhh
Q psy6094 404 PSTAKI-IKELRARLD-MLLAHKLSHPGTTAWGDPNEGNILHCCSGF 448 (455)
Q Consensus 404 ~~~~~~-~~~~~~~~~-~~sD~~~~~~~~~~~~~~~~~~~~~~c~~~ 448 (455)
...+.+ ++..|++|. .+|||+|++|+|+.|.+.+.. .+||.+|
T Consensus 506 ~~~~~~~a~~~~~kf~~~eGDh~tlL~vy~~~~~~~~~--~~wC~en 550 (674)
T KOG0922|consen 506 KDKKAEDADRKRAKFANPEGDHLTLLNVYESWKENGTS--KKWCKEN 550 (674)
T ss_pred cchhhhhhhHHHHhhcCcccCHHHHHHHHHHHHhcCCh--hhHHHHh
Confidence 888877 889999999 999999999999999985543 7999984
No 3
>KOG0924|consensus
Probab=100.00 E-value=8.9e-89 Score=689.72 Aligned_cols=389 Identities=26% Similarity=0.362 Sum_probs=352.9
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh----------------------------hh--
Q psy6094 48 EMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL----------------------------KR-- 96 (455)
Q Consensus 48 ~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~----------------------------e~-- 96 (455)
.+.++|+.||+|.++++++..|..|++|||.|+||||||||+| ||++ |+
T Consensus 347 ~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~ 426 (1042)
T KOG0924|consen 347 SIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGV 426 (1042)
T ss_pred hHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCC
Confidence 4779999999999999999999999999999999999999999 9987 33
Q ss_pred --cCCCCC-hH-----------------HHHHhc-cCCCCcCcc-------------hHHHHHHHHHHHHhcCCCCeEEE
Q psy6094 97 --SETQQY-PN-----------------DVLNML-KDPELEGVN-------------NDVIFSLLQHICTTQRPGAILVY 142 (455)
Q Consensus 97 --~~~vg~-p~-----------------~ll~~l-~d~~L~~~~-------------~D~ll~~lk~il~~~~~~~k~il 142 (455)
|..||| +| -|||+. .|..|..|+ +|+|+++||.++ ..|.|+|+|+
T Consensus 427 ~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~l-arRrdlKliV 505 (1042)
T KOG0924|consen 427 TLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVL-ARRRDLKLIV 505 (1042)
T ss_pred ccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHH-HhhccceEEE
Confidence 555663 22 188988 999999999 999999999999 8888999999
Q ss_pred EccCC-----------------CCC-ccceEEeehhhhhhhhccCCCCChHHHHHHHHccCCCCEEEEcCCHHHHHHHHH
Q psy6094 143 CTYTF-----------------MGV-SPMKVFFCKNVLQRLMKGVGANSPKRWVKLLRSMLVVPILVFLPGWDTINSLHR 204 (455)
Q Consensus 143 mSAT~-----------------~g~-~pv~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~~g~iLVFlp~~~ei~~l~~ 204 (455)
+|||+ ||| |||++.|.+.+.++|+...... .+..|+. ..+|+||||++|+++|+..+.
T Consensus 506 tSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq---~v~Ihl~-~~~GdilIfmtGqediE~t~~ 581 (1042)
T KOG0924|consen 506 TSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQ---AVQIHLS-GPPGDILIFMTGQEDIECTCD 581 (1042)
T ss_pred eeccccHHHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhh---heEeecc-CCCCCEEEecCCCcchhHHHH
Confidence 99999 899 9999999999999887654332 1223333 678999999999999999888
Q ss_pred HHHhcCCC----CCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCC
Q psy6094 205 SMCQSSFF----NSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDN 280 (455)
Q Consensus 205 ~L~~~~~~----~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~ 280 (455)
.+...-.. ....+.|+|+||+||+.-|.++|++.+.|.|||||||||||||+|||+|.||||||++|.++||++.|
T Consensus 582 ~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G 661 (1042)
T KOG0924|consen 582 IIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIG 661 (1042)
T ss_pred HHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccc
Confidence 87754221 23479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhhHHhhhcccCCCCCCeEEecCCh----hhhccCCCCcccccC-hHHHHHHHh---------hhcCCCC
Q psy6094 281 IATLKPEWISLANAKQRRGRAGRTLKRSETQQYPN----DVLNMLKDPELEGVN-NDVIFSLLQ---------HICTTQR 346 (455)
Q Consensus 281 ~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~----~~~~~~~~PEi~r~~-~~~~L~~l~---------~~~~~P~ 346 (455)
++.|+.+|||+|+|.||+|||||++||.||||||+ ++|-..+.|||+|+| ..++|.+++ +|+|||+
T Consensus 662 ~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pp 741 (1042)
T KOG0924|consen 662 MDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPP 741 (1042)
T ss_pred cceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCH
Confidence 99999999999999999999999999999999996 456678999999999 999887665 7999999
Q ss_pred hhhHHhHHhhhhhcccccCCCCCCcccCChHHHHHhhCCCCh---------------hHHHHHHHhhc----CcCCcChH
Q psy6094 347 PGAILVFLPGWDTINSLHRSMCQSSFFNSCLLYEFAMVDNKP---------------KEIITVRDCLS----FECKPSTA 407 (455)
Q Consensus 347 ~~~i~~al~~L~~lgald~~~~l~~~~~T~lG~~l~~lp~~p---------------~~~l~iaa~ls----f~~p~~~~ 407 (455)
.+.+..|+..|..||||+..|.| |++|+.|++||+|| ++|++|++||| |+.|.+.+
T Consensus 742 ed~~~~sly~Lw~LGAl~~~g~L-----T~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~ 816 (1042)
T KOG0924|consen 742 EDNLLNSLYQLWTLGALDNTGQL-----TPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKERE 816 (1042)
T ss_pred HHHHHHHHHHHHHhhccccCCcc-----chhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccch
Confidence 99999999999999999999999 99999999999999 99999999999 99999999
Q ss_pred HHHHHHHhhhC-CCCcHHHHHHHHHHHhcCCCCchHhHHHhh
Q psy6094 408 KIIKELRARLD-MLLAHKLSHPGTTAWGDPNEGNILHCCSGF 448 (455)
Q Consensus 408 ~~~~~~~~~~~-~~sD~~~~~~~~~~~~~~~~~~~~~~c~~~ 448 (455)
++++.+|.+|. +.|||||++|+|++|..++++ ..||.+|
T Consensus 817 eead~ar~Kf~~~~sDhLTlLNVf~qw~~~~~~--~~WCnd~ 856 (1042)
T KOG0924|consen 817 EEADAAREKFQVPESDHLTLLNVFNQWRKNKYS--SMWCNDH 856 (1042)
T ss_pred hhhhhHHhhhcCCCCchhhHHHHHHHHHhcCCc--hhhhhhh
Confidence 99999999999 999999999999999998876 7899873
No 4
>KOG0925|consensus
Probab=100.00 E-value=1.8e-85 Score=646.01 Aligned_cols=408 Identities=27% Similarity=0.382 Sum_probs=362.2
Q ss_pred cCCcchHHHHHHHHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh--------
Q psy6094 24 LNDPVLDAAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL-------- 94 (455)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~-------- 94 (455)
...........+.|...-.+++|++++++|..||+|.+++++++.+.+||.+|++|+||||||||+| |+++
T Consensus 14 ~~~~~~~~k~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~ 93 (699)
T KOG0925|consen 14 ISGAEENAKAINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTG 93 (699)
T ss_pred cccccchhhhcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccc
Confidence 3334444455778889999999999999999999999999999999999999999999999999999 7776
Q ss_pred ------------------------hhcCCCCC---------hHH---------HHHhc-cCCCCcCcc------------
Q psy6094 95 ------------------------KRSETQQY---------PND---------VLNML-KDPELEGVN------------ 119 (455)
Q Consensus 95 ------------------------e~~~~vg~---------p~~---------ll~~l-~d~~L~~~~------------ 119 (455)
..|..||| |++ |+|+. +||.|..|+
T Consensus 94 v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtl 173 (699)
T KOG0925|consen 94 VACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTL 173 (699)
T ss_pred eeecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhH
Confidence 34666774 222 77887 999999999
Q ss_pred -hHHHHHHHHHHHHhcCCCCeEEEEccCC-----------------CCCccceEEeehhhhhhhhccCCCCChHHHHHHH
Q psy6094 120 -NDVIFSLLQHICTTQRPGAILVYCTYTF-----------------MGVSPMKVFFCKNVLQRLMKGVGANSPKRWVKLL 181 (455)
Q Consensus 120 -~D~ll~~lk~il~~~~~~~k~ilmSAT~-----------------~g~~pv~~~~l~~~~~~~~~~~~~~~~~~l~~~i 181 (455)
+|+|+++||+++ ..|+|+|+|+||||. ||.|||+.+|.+++..+|+..... ..+..|.
T Consensus 174 ATDiLmGllk~v~-~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg~~PvEi~Yt~e~erDylEaair---tV~qih~ 249 (699)
T KOG0925|consen 174 ATDILMGLLKEVV-RNRPDLKLVVMSATLDAEKFQRYFGNAPLLAVPGTHPVEIFYTPEPERDYLEAAIR---TVLQIHM 249 (699)
T ss_pred HHHHHHHHHHHHH-hhCCCceEEEeecccchHHHHHHhCCCCeeecCCCCceEEEecCCCChhHHHHHHH---HHHHHHh
Confidence 999999999999 778999999999999 788999999999887776644322 1244444
Q ss_pred HccCCCCEEEEcCCHHHHHHHHHHHHhcCCC---CCCCeEEEeecCCCChhhHhhhhcCCCCC-----ceEEEEeCCCCc
Q psy6094 182 RSMLVVPILVFLPGWDTINSLHRSMCQSSFF---NSSRFQIIPLHSMLPTVSQKSIFNTPPEG-----VRKIVLATNIAE 253 (455)
Q Consensus 182 ~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~---~~~~~~v~~lhs~l~~~~r~~v~~~~~~g-----~~kVivaTniae 253 (455)
+ +.+|+|||||+|.+||+.+++.+...... ..+.+.|+||| +.+|.++|++.+.. .|||+|+||+||
T Consensus 250 ~-ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniae 324 (699)
T KOG0925|consen 250 C-EEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAE 324 (699)
T ss_pred c-cCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchh
Confidence 4 66999999999999999999999865432 35679999999 77788999988753 589999999999
Q ss_pred cCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCChh----hhccCCCCccccc
Q psy6094 254 TSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPND----VLNMLKDPELEGV 329 (455)
Q Consensus 254 ~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~----~~~~~~~PEi~r~ 329 (455)
+|+||++|.||||.|+.|+++|||+.+.+++...||||++|.||+|||||+.||+||||||++ +|.+.+.|||+|.
T Consensus 325 tsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrs 404 (699)
T KOG0925|consen 325 TSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRS 404 (699)
T ss_pred eeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999964 5667899999999
Q ss_pred C-hHHHHHHHh---------hhcCCCChhhHHhHHhhhhhcccccCCCCCCcccCChHHHHHhhCCCCh-----------
Q psy6094 330 N-NDVIFSLLQ---------HICTTQRPGAILVFLPGWDTINSLHRSMCQSSFFNSCLLYEFAMVDNKP----------- 388 (455)
Q Consensus 330 ~-~~~~L~~l~---------~~~~~P~~~~i~~al~~L~~lgald~~~~l~~~~~T~lG~~l~~lp~~p----------- 388 (455)
| .+++|++.. +|++||.|+++++|++.|..++|||++|+| |++|..|++||+||
T Consensus 405 NL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnL-----T~lG~imSEFPLdPqLAkmLi~S~e 479 (699)
T KOG0925|consen 405 NLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNL-----TSLGEIMSEFPLDPQLAKMLIGSCE 479 (699)
T ss_pred hhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCccc-----chhhhhhhcCCCChHHHHHHhhcCC
Confidence 9 999998764 899999999999999999999999999999 99999999999999
Q ss_pred ----hHHHHHHHhhc----CcCCc-ChHHHHHHHHhhhC-CCCcHHHHHHHHHHHhcCCCCchHhHHHh
Q psy6094 389 ----KEIITVRDCLS----FECKP-STAKIIKELRARLD-MLLAHKLSHPGTTAWGDPNEGNILHCCSG 447 (455)
Q Consensus 389 ----~~~l~iaa~ls----f~~p~-~~~~~~~~~~~~~~-~~sD~~~~~~~~~~~~~~~~~~~~~~c~~ 447 (455)
+++++|+|||| |..|. ..++.++++++.|+ ..|||+|++|+|++|++... ..+||++
T Consensus 480 fnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~~faH~dGDHlTLlnVYhAfkq~~~--~~~WC~~ 546 (699)
T KOG0925|consen 480 FNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKETFAHIDGDHLTLLNVYHAFKQNNE--DPNWCYD 546 (699)
T ss_pred CCchHHHHHHHhcccCCccccCCChhHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCC--ChhHHHH
Confidence 89999999999 99998 66778899999999 99999999999999999884 4799998
No 5
>KOG0920|consensus
Probab=100.00 E-value=1.3e-83 Score=689.86 Aligned_cols=413 Identities=31% Similarity=0.492 Sum_probs=364.9
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh--------------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL-------------------- 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~-------------------- 94 (455)
.+.....+++|+++++.|++||+|.++++|+++|++++|++|+|+||||||||+| |||+
T Consensus 152 ~~~~~~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIs 231 (924)
T KOG0920|consen 152 RQSEPKKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRIS 231 (924)
T ss_pred hhchhhhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHH
Confidence 6667778899999999999999999999999999999999999999999999999 9998
Q ss_pred ----------hhcCC----CCC------------------hHHHHHhc-cCCCCcCcc-------------hHHHHHHHH
Q psy6094 95 ----------KRSET----QQY------------------PNDVLNML-KDPELEGVN-------------NDVIFSLLQ 128 (455)
Q Consensus 95 ----------e~~~~----vg~------------------p~~ll~~l-~d~~L~~~~-------------~D~ll~~lk 128 (455)
||++. ||| .+.|||.| .|+.+.+++ +|+||.++|
T Consensus 232 AIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk 311 (924)
T KOG0920|consen 232 AISVAERVAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLK 311 (924)
T ss_pred HHHHHHHHHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHH
Confidence 44333 332 11299999 999999998 999999999
Q ss_pred HHHHhcCCCCeEEEEccCC-----------------CCC-ccceEEeehhhhhhhh--ccCC-----C--C---------
Q psy6094 129 HICTTQRPGAILVYCTYTF-----------------MGV-SPMKVFFCKNVLQRLM--KGVG-----A--N--------- 172 (455)
Q Consensus 129 ~il~~~~~~~k~ilmSAT~-----------------~g~-~pv~~~~l~~~~~~~~--~~~~-----~--~--------- 172 (455)
.++ ..+|++|+||||||+ +|+ |||..+|++|++.... .... + .
T Consensus 312 ~lL-~~~p~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (924)
T KOG0920|consen 312 DLL-PRNPDLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKL 390 (924)
T ss_pred HHh-hhCCCceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchh
Confidence 999 889999999999999 899 9999999999875321 1000 0 0
Q ss_pred ----ChH----HHHHHHHc-cCCCCEEEEcCCHHHHHHHHHHHHhcCCCC-CCCeEEEeecCCCChhhHhhhhcCCCCCc
Q psy6094 173 ----SPK----RWVKLLRS-MLVVPILVFLPGWDTINSLHRSMCQSSFFN-SSRFQIIPLHSMLPTVSQKSIFNTPPEGV 242 (455)
Q Consensus 173 ----~~~----~l~~~i~~-~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~-~~~~~v~~lhs~l~~~~r~~v~~~~~~g~ 242 (455)
.+. .+..+|+. ...|.|||||||+++|..+.+.|.....+. ..++.++|+||.|+..+|+.||.++|.|.
T Consensus 391 ~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~ 470 (924)
T KOG0920|consen 391 WEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGT 470 (924)
T ss_pred ccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCc
Confidence 011 14555655 558999999999999999999998765443 35799999999999999999999999999
Q ss_pred eEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCCh---h-hh
Q psy6094 243 RKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPN---D-VL 318 (455)
Q Consensus 243 ~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~---~-~~ 318 (455)
||||+||||||+|||||||.||||+|+.|++.||+..++..+...|+|||++.||+|||||+.+|+||+||+. + .+
T Consensus 471 RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~ 550 (924)
T KOG0920|consen 471 RKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLM 550 (924)
T ss_pred chhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999993 3 33
Q ss_pred ccCCCCcccccC-hHHHH-----------HHHhhhcCCCChhhHHhHHhhhhhcccccCCCCCCcccCChHHHHHhhCCC
Q psy6094 319 NMLKDPELEGVN-NDVIF-----------SLLQHICTTQRPGAILVFLPGWDTINSLHRSMCQSSFFNSCLLYEFAMVDN 386 (455)
Q Consensus 319 ~~~~~PEi~r~~-~~~~L-----------~~l~~~~~~P~~~~i~~al~~L~~lgald~~~~l~~~~~T~lG~~l~~lp~ 386 (455)
..++.|||+|.+ .++|| .|++.+++||+.+++..|+..|..+|||+.+++| |+||++|+.||+
T Consensus 551 ~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~L-----T~LG~~la~lPv 625 (924)
T KOG0920|consen 551 LAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEEL-----TPLGLHLASLPV 625 (924)
T ss_pred cccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccc-----hHHHHHHHhCCC
Confidence 459999999999 99999 6788999999999999999999999999999999 999999999999
Q ss_pred Ch---------------hHHHHHHHhhc----CcCCcChHHHHHHHHhhhC--CCCcHHHHHHHHHHHhcCCCC--c-hH
Q psy6094 387 KP---------------KEIITVRDCLS----FECKPSTAKIIKELRARLD--MLLAHKLSHPGTTAWGDPNEG--N-IL 442 (455)
Q Consensus 387 ~p---------------~~~l~iaa~ls----f~~p~~~~~~~~~~~~~~~--~~sD~~~~~~~~~~~~~~~~~--~-~~ 442 (455)
|| ||+++|||+|+ |..|.++++.+++++..|+ ..|||+|++++|+.|.....+ . ..
T Consensus 626 d~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~~~~~~~~ 705 (924)
T KOG0920|consen 626 DVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWREILRSGPSAEK 705 (924)
T ss_pred ccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHH
Confidence 99 99999999999 8888899999999999998 669999999999999998776 2 44
Q ss_pred hHHHhh----hcCccc
Q psy6094 443 HCCSGF----SRMVMV 454 (455)
Q Consensus 443 ~~c~~~----~~~~m~ 454 (455)
+||++| ..|.|+
T Consensus 706 ~fc~~~fLs~~~l~~i 721 (924)
T KOG0920|consen 706 DFCEENFLSSNTLQEI 721 (924)
T ss_pred HHHHHhhccHHHHHHH
Confidence 999984 445554
No 6
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.2e-78 Score=652.24 Aligned_cols=406 Identities=27% Similarity=0.345 Sum_probs=345.1
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh-------------
Q psy6094 29 LDAAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL------------- 94 (455)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~------------- 94 (455)
........+.....++++..+++.|..||+|..+++|+.+|.+|+++||.|+||||||||+| |+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQ 101 (845)
T COG1643 22 KNQVRGSGMDARSRSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQ 101 (845)
T ss_pred hhhhhhhhhhhhhcccccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecC
Confidence 34445556677778888999999999999999999999999999999999999999999999 8887
Q ss_pred ---------------hh----cCCCCC-h--------H---------HHHHhc-cCCCCcCcc-------------hHHH
Q psy6094 95 ---------------KR----SETQQY-P--------N---------DVLNML-KDPELEGVN-------------NDVI 123 (455)
Q Consensus 95 ---------------e~----~~~vg~-p--------~---------~ll~~l-~d~~L~~~~-------------~D~l 123 (455)
++ |+.||| . + -|++++ .|+.|++|+ +|++
T Consensus 102 PRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDil 181 (845)
T COG1643 102 PRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDIL 181 (845)
T ss_pred chHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHH
Confidence 23 334553 1 1 199999 999999999 9999
Q ss_pred HHHHHHHHHhcCCCCeEEEEccCC-----------------CCC-ccceEEeehhhhhhhhccCCCCChHHHHHHHH---
Q psy6094 124 FSLLQHICTTQRPGAILVYCTYTF-----------------MGV-SPMKVFFCKNVLQRLMKGVGANSPKRWVKLLR--- 182 (455)
Q Consensus 124 l~~lk~il~~~~~~~k~ilmSAT~-----------------~g~-~pv~~~~l~~~~~~~~~~~~~~~~~~l~~~i~--- 182 (455)
|+++|+++...|+|+|+|+||||+ +|+ |||+++|.+.....+. .+..+...+.
T Consensus 182 Lgllk~~~~~rr~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~------l~~ai~~~v~~~~ 255 (845)
T COG1643 182 LGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYI------LLDAIVAAVDIHL 255 (845)
T ss_pred HHHHHHHHhhcCCCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchh------HHHHHHHHHHHhc
Confidence 999999996667799999999999 899 9999999876543331 1111222222
Q ss_pred ccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCee
Q psy6094 183 SMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIV 262 (455)
Q Consensus 183 ~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~ 262 (455)
....|+|||||||.+||+.+++.|++.. ....+.++||||.|+.++|.++|++.+.|+||||+||||||||||||||+
T Consensus 256 ~~~~GdILvFLpG~~EI~~~~~~L~~~~--l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr 333 (845)
T COG1643 256 REGSGSILVFLPGQREIERTAEWLEKAE--LGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIR 333 (845)
T ss_pred cCCCCCEEEECCcHHHHHHHHHHHHhcc--ccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeE
Confidence 2779999999999999999999999821 12469999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCChh---hhccCCCCcccccC-hHHHHHHH
Q psy6094 263 YVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPND---VLNMLKDPELEGVN-NDVIFSLL 338 (455)
Q Consensus 263 ~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~---~~~~~~~PEi~r~~-~~~~L~~l 338 (455)
||||+|+.|.+.||+.+|++.|.++|||||+|.||+|||||+++|+|||||+++ .|.+++.|||+|+| ..++|++.
T Consensus 334 ~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l~ 413 (845)
T COG1643 334 YVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLK 413 (845)
T ss_pred EEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHhcccCCChhhhhcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999964 56788999999999 99999876
Q ss_pred h----------hhcCCCChhhHHhHHhhhhhcccccCCCCCCcccCChHHHHHhhCCCCh---------------hHHHH
Q psy6094 339 Q----------HICTTQRPGAILVFLPGWDTINSLHRSMCQSSFFNSCLLYEFAMVDNKP---------------KEIIT 393 (455)
Q Consensus 339 ~----------~~~~~P~~~~i~~al~~L~~lgald~~~~l~~~~~T~lG~~l~~lp~~p---------------~~~l~ 393 (455)
+ .|+|||+..++..|++.|..+||||.++.| |++|+.|+.||+|| +++++
T Consensus 414 ~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~g~L-----T~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~ 488 (845)
T COG1643 414 SLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSGKL-----TPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAAT 488 (845)
T ss_pred hcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCcCCCCCC-----CHHHHHHHhCCCChHHHHHHHhccccCcHHHHHH
Confidence 4 689999999999999999999999999999 99999999999999 78999
Q ss_pred HHHhhcCcC-------CcChHH---HHHHHH-hhhC----CCCcHHHHHHHHHHHhcCCCCc----hHhHHHh
Q psy6094 394 VRDCLSFEC-------KPSTAK---IIKELR-ARLD----MLLAHKLSHPGTTAWGDPNEGN----ILHCCSG 447 (455)
Q Consensus 394 iaa~lsf~~-------p~~~~~---~~~~~~-~~~~----~~sD~~~~~~~~~~~~~~~~~~----~~~~c~~ 447 (455)
|||+||+.. +.+.++ ..+.++ .++. +.+||++++++|..|...+... ..+||..
T Consensus 489 Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~ 561 (845)
T COG1643 489 IASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRA 561 (845)
T ss_pred HHHhhccCCCcchhccccchhhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhh
Confidence 999999655 222222 222222 2222 5799999999999999876311 3489986
No 7
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.1e-73 Score=635.35 Aligned_cols=383 Identities=23% Similarity=0.303 Sum_probs=329.0
Q ss_pred HHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh----------------------------hh----
Q psy6094 50 LEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL----------------------------KR---- 96 (455)
Q Consensus 50 l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~----------------------------e~---- 96 (455)
+..|..||+|.++++|+++|.+|+++||+|+||||||||+| ++++ ++
T Consensus 67 ~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~l 146 (1294)
T PRK11131 67 ITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETEL 146 (1294)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhh
Confidence 56678899999999999999999999999999999999999 6664 22
Q ss_pred cCCCC------------------ChHHHHHhc-cCCCCcCcc-------------hHHHHHHHHHHHHhcCCCCeEEEEc
Q psy6094 97 SETQQ------------------YPNDVLNML-KDPELEGVN-------------NDVIFSLLQHICTTQRPGAILVYCT 144 (455)
Q Consensus 97 ~~~vg------------------~p~~ll~~l-~d~~L~~~~-------------~D~ll~~lk~il~~~~~~~k~ilmS 144 (455)
|..|| +|+.|++++ .++.|.+|+ +|+++++|+.++ ..++++|+|+||
T Consensus 147 G~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL-~~rpdlKvILmS 225 (1294)
T PRK11131 147 GGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELL-PRRPDLKVIITS 225 (1294)
T ss_pred cceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhh-hcCCCceEEEee
Confidence 33344 345588988 888898888 889999999998 778899999999
Q ss_pred cCC-----------------CCC-ccceEEeehhhhhhhhccCCCCChHH---H---HHHHHccCCCCEEEEcCCHHHHH
Q psy6094 145 YTF-----------------MGV-SPMKVFFCKNVLQRLMKGVGANSPKR---W---VKLLRSMLVVPILVFLPGWDTIN 200 (455)
Q Consensus 145 AT~-----------------~g~-~pv~~~~l~~~~~~~~~~~~~~~~~~---l---~~~i~~~~~g~iLVFlp~~~ei~ 200 (455)
||+ +|+ |||+.+|.+..... ....... + +..++...+|+|||||||.++|+
T Consensus 226 ATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~-----~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe 300 (1294)
T PRK11131 226 ATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEA-----DDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIR 300 (1294)
T ss_pred CCCCHHHHHHHcCCCCEEEEcCccccceEEEeeccccc-----chhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHH
Confidence 999 688 99999887532110 0000111 1 22233467899999999999999
Q ss_pred HHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCC
Q psy6094 201 SLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDN 280 (455)
Q Consensus 201 ~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~ 280 (455)
.+++.|...+ ...+.+++|||+|++++|.++|++ .|.+||||||||||||||||+|+||||+|++|.+.||+++|
T Consensus 301 ~lae~L~~~~---~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~ 375 (1294)
T PRK11131 301 DTADALNKLN---LRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK 375 (1294)
T ss_pred HHHHHHHhcC---CCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccC
Confidence 9999998754 224679999999999999999996 57899999999999999999999999999999999999999
Q ss_pred cccccccccchhhHHhhhcccCCCCCCeEEecCChhh---hccCCCCcccccC-hHHHHHHHh---------hhcCCCCh
Q psy6094 281 IATLKPEWISLANAKQRRGRAGRTLKRSETQQYPNDV---LNMLKDPELEGVN-NDVIFSLLQ---------HICTTQRP 347 (455)
Q Consensus 281 ~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~~---~~~~~~PEi~r~~-~~~~L~~l~---------~~~~~P~~ 347 (455)
++.+...|+|+++|.||+|||||+++|+||+||+++. +++++.|||+|++ .++||++++ .|++||+.
T Consensus 376 ~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~ 455 (1294)
T PRK11131 376 VQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDK 455 (1294)
T ss_pred cccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhhcccCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCH
Confidence 9999999999999999999999999999999999654 5678999999999 999998765 68999999
Q ss_pred hhHHhHHhhhhhcccccCC-----CCCCcccCChHHHHHhhCCCCh---------------hHHHHHHHhhc----CcCC
Q psy6094 348 GAILVFLPGWDTINSLHRS-----MCQSSFFNSCLLYEFAMVDNKP---------------KEIITVRDCLS----FECK 403 (455)
Q Consensus 348 ~~i~~al~~L~~lgald~~-----~~l~~~~~T~lG~~l~~lp~~p---------------~~~l~iaa~ls----f~~p 403 (455)
++|..|++.|..+||||.+ ++| |++|+.|++||+|| +++++|||+|| |..|
T Consensus 456 ~~i~~al~~L~~LgAld~~~~~~~~~L-----T~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p 530 (1294)
T PRK11131 456 RNIQDGVRLLEELGAITTDEQASAYKL-----TPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERP 530 (1294)
T ss_pred HHHHHHHHHHHHCCCCCccccCCCccC-----cHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCC
Confidence 9999999999999999864 357 99999999999999 89999999999 7788
Q ss_pred cChHHHHHHHHhhhC-CCCcHHHHHHHHHHHhcCCC----CchHhHHHhh
Q psy6094 404 PSTAKIIKELRARLD-MLLAHKLSHPGTTAWGDPNE----GNILHCCSGF 448 (455)
Q Consensus 404 ~~~~~~~~~~~~~~~-~~sD~~~~~~~~~~~~~~~~----~~~~~~c~~~ 448 (455)
.+++++++.+|++|. ..|||++++|+|+.|.+... +..++||++|
T Consensus 531 ~~~~~~a~~~~~~f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~ 580 (1294)
T PRK11131 531 MDKQQASDEKHRRFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTD 580 (1294)
T ss_pred chhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHh
Confidence 888889999999999 99999999999999986432 2245899983
No 8
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.9e-72 Score=627.53 Aligned_cols=386 Identities=24% Similarity=0.319 Sum_probs=329.5
Q ss_pred HHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh----------------------------hhcCC
Q psy6094 49 MLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL----------------------------KRSET 99 (455)
Q Consensus 49 ~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~----------------------------e~~~~ 99 (455)
.+..+..||++.++++|+++|.+|+++||+|+||||||||+| ++++ ++|..
T Consensus 59 ~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~ 138 (1283)
T TIGR01967 59 EIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTP 138 (1283)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCC
Confidence 456778899999999999999999999999999999999999 7765 33333
Q ss_pred ----CCC------------------hHHHHHhc-cCCCCcCcc-------------hHHHHHHHHHHHHhcCCCCeEEEE
Q psy6094 100 ----QQY------------------PNDVLNML-KDPELEGVN-------------NDVIFSLLQHICTTQRPGAILVYC 143 (455)
Q Consensus 100 ----vg~------------------p~~ll~~l-~d~~L~~~~-------------~D~ll~~lk~il~~~~~~~k~ilm 143 (455)
||| ++.|++++ .|+.|.+|+ +|++++++++++ ..++++|+|+|
T Consensus 139 lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il-~~rpdLKlIlm 217 (1283)
T TIGR01967 139 LGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLL-PRRPDLKIIIT 217 (1283)
T ss_pred cceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHH-hhCCCCeEEEE
Confidence 331 33488998 899999998 899999999998 78899999999
Q ss_pred ccCC-----------------CCC-ccceEEeehhhhhhhhccCCCCChHHH---HHHHHccCCCCEEEEcCCHHHHHHH
Q psy6094 144 TYTF-----------------MGV-SPMKVFFCKNVLQRLMKGVGANSPKRW---VKLLRSMLVVPILVFLPGWDTINSL 202 (455)
Q Consensus 144 SAT~-----------------~g~-~pv~~~~l~~~~~~~~~~~~~~~~~~l---~~~i~~~~~g~iLVFlp~~~ei~~l 202 (455)
|||+ +|+ |||+.+|........ .........+ +..+....+|+|||||||..+|+.+
T Consensus 218 SATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~--~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l 295 (1283)
T TIGR01967 218 SATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQE--DDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDA 295 (1283)
T ss_pred eCCcCHHHHHHHhcCCCEEEECCCcccceeEEeccccccc--chhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHH
Confidence 9999 688 999998865321000 0000001112 2222335679999999999999999
Q ss_pred HHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcc
Q psy6094 203 HRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIA 282 (455)
Q Consensus 203 ~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~ 282 (455)
++.|.+.. ..++.+++|||+|++++|.++|+++ +.+||||||||||||||||+|+||||+|++|.+.||+.+|++
T Consensus 296 ~~~L~~~~---~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~ 370 (1283)
T TIGR01967 296 AEILRKRN---LRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQ 370 (1283)
T ss_pred HHHHHhcC---CCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCcc
Confidence 99998753 2357899999999999999999875 358999999999999999999999999999999999999999
Q ss_pred cccccccchhhHHhhhcccCCCCCCeEEecCChhh---hccCCCCcccccC-hHHHHHHHh---------hhcCCCChhh
Q psy6094 283 TLKPEWISLANAKQRRGRAGRTLKRSETQQYPNDV---LNMLKDPELEGVN-NDVIFSLLQ---------HICTTQRPGA 349 (455)
Q Consensus 283 ~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~~---~~~~~~PEi~r~~-~~~~L~~l~---------~~~~~P~~~~ 349 (455)
.+.+.|||+++|.||+|||||+++|+||+||+++. +.+++.|||+|++ .+++|++.+ .|++||+.++
T Consensus 371 ~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~~~ 450 (1283)
T TIGR01967 371 RLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRA 450 (1283)
T ss_pred ccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhhhhccCcccccccHHHHHHHHHhcCCCCcccccCCCCCCHHH
Confidence 99999999999999999999999999999999654 5678999999999 999997764 5899999999
Q ss_pred HHhHHhhhhhcccccCCC---CCCcccCChHHHHHhhCCCCh---------------hHHHHHHHhhc----CcCCcChH
Q psy6094 350 ILVFLPGWDTINSLHRSM---CQSSFFNSCLLYEFAMVDNKP---------------KEIITVRDCLS----FECKPSTA 407 (455)
Q Consensus 350 i~~al~~L~~lgald~~~---~l~~~~~T~lG~~l~~lp~~p---------------~~~l~iaa~ls----f~~p~~~~ 407 (455)
+..|++.|..+||||.++ +| |++|+.|+.||+|| +++++|||+|| |..|.+++
T Consensus 451 i~~A~~~L~~LGAld~~~~~~~L-----T~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~ 525 (1283)
T TIGR01967 451 IRDGFRLLEELGALDDDEAEPQL-----TPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEKQ 525 (1283)
T ss_pred HHHHHHHHHHCCCCCCCCCCccc-----cHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchhH
Confidence 999999999999999988 68 99999999999999 88999999999 66778888
Q ss_pred HHHHHHHhhhC-CCCcHHHHHHHHHHHhcCCC----CchHhHHHh
Q psy6094 408 KIIKELRARLD-MLLAHKLSHPGTTAWGDPNE----GNILHCCSG 447 (455)
Q Consensus 408 ~~~~~~~~~~~-~~sD~~~~~~~~~~~~~~~~----~~~~~~c~~ 447 (455)
++++.++++|. ..|||++++|+|+.|.+... +..++||++
T Consensus 526 ~~a~~~~~~f~~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~ 570 (1283)
T TIGR01967 526 QAADQAHARFKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRK 570 (1283)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHH
Confidence 89999999999 99999999999999986432 224589997
No 9
>KOG0926|consensus
Probab=100.00 E-value=5.7e-73 Score=582.68 Aligned_cols=391 Identities=25% Similarity=0.345 Sum_probs=328.2
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhhh--------hcCCCC--ChHH--------
Q psy6094 45 RYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITLK--------RSETQQ--YPND-------- 105 (455)
Q Consensus 45 ~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~e--------~~~~vg--~p~~-------- 105 (455)
+-.++.+.|..||++....+|+++|+.|.+|||+|+||||||||+| ||++. .+..+| +|||
T Consensus 244 R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAk 323 (1172)
T KOG0926|consen 244 RPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAK 323 (1172)
T ss_pred CcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHH
Confidence 3457788999999999999999999999999999999999999999 99871 111233 2443
Q ss_pred ------------------------------------HHHhc-cCCCCcCcc-------------hHHHHHHHHHHHHhcC
Q psy6094 106 ------------------------------------VLNML-KDPELEGVN-------------NDVIFSLLQHICTTQR 135 (455)
Q Consensus 106 ------------------------------------ll~~l-~d~~L~~~~-------------~D~ll~~lk~il~~~~ 135 (455)
||+++ .|-.|..|+ ||+|+++|.+++ ..|
T Consensus 324 RVa~EL~~~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV-~LR 402 (1172)
T KOG0926|consen 324 RVAFELGVLGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIV-PLR 402 (1172)
T ss_pred HHHHHhccCccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHH-HHH
Confidence 89999 999999999 999999998887 443
Q ss_pred ----------CCCeEEEEccCC---------------------CCC-ccceEEeehhhhhhhhccCCCCChHHHHHHHHc
Q psy6094 136 ----------PGAILVYCTYTF---------------------MGV-SPMKVFFCKNVLQRLMKGVGANSPKRWVKLLRS 183 (455)
Q Consensus 136 ----------~~~k~ilmSAT~---------------------~g~-~pv~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~ 183 (455)
+.+|+|+||||+ +.| |||.++|-+....+|+..+- .-.+-|++
T Consensus 403 ~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAf-----rKtc~IH~ 477 (1172)
T KOG0926|consen 403 QKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAF-----RKTCKIHK 477 (1172)
T ss_pred HHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHH-----HHHHHHhh
Confidence 368999999999 567 99999987654444432211 12233443
Q ss_pred -cCCCCEEEEcCCHHHHHHHHHHHHhcCC---------------------------------------------------
Q psy6094 184 -MLVVPILVFLPGWDTINSLHRSMCQSSF--------------------------------------------------- 211 (455)
Q Consensus 184 -~~~g~iLVFlp~~~ei~~l~~~L~~~~~--------------------------------------------------- 211 (455)
.++|.||||++|+.||+.+++.|++...
T Consensus 478 kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~ 557 (1172)
T KOG0926|consen 478 KLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELV 557 (1172)
T ss_pred cCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhh
Confidence 7899999999999999999999986500
Q ss_pred ------------------------------------------CCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeC
Q psy6094 212 ------------------------------------------FNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLAT 249 (455)
Q Consensus 212 ------------------------------------------~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaT 249 (455)
+..+.+.|+||||-|+.++|.+||...|.|.|-|||||
T Consensus 558 ~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaT 637 (1172)
T KOG0926|consen 558 DSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVAT 637 (1172)
T ss_pred cccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEec
Confidence 00125789999999999999999999999999999999
Q ss_pred CCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCC----hhhhccCCCCc
Q psy6094 250 NIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYP----NDVLNMLKDPE 325 (455)
Q Consensus 250 niae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t----~~~~~~~~~PE 325 (455)
||||||+|||+|+||||||+.|+..||..+|+..+...|||||++.||+|||||+++|+|||||+ .+.|+++..||
T Consensus 638 NVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PE 717 (1172)
T KOG0926|consen 638 NVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPE 717 (1172)
T ss_pred cchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 45788999999
Q ss_pred ccccC-hHHHHHHHh---------hhcCCCChhhHHhHHhhhhhcccccCCCCCCcccCChHHHHHhhCCCCh-------
Q psy6094 326 LEGVN-NDVIFSLLQ---------HICTTQRPGAILVFLPGWDTINSLHRSMCQSSFFNSCLLYEFAMVDNKP------- 388 (455)
Q Consensus 326 i~r~~-~~~~L~~l~---------~~~~~P~~~~i~~al~~L~~lgald~~~~l~~~~~T~lG~~l~~lp~~p------- 388 (455)
|++.| ++++|++.+ .|+.||+..++..|...|..|||||.+|.+ |+||+.|+.||+.|
T Consensus 718 Ilk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~l-----T~lGk~mS~FPlsPrfsKmL~ 792 (1172)
T KOG0926|consen 718 ILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGL-----TKLGKAMSLFPLSPRFSKMLA 792 (1172)
T ss_pred HhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCc-----ccccchhcccccChhHHHHHH
Confidence 99999 999999876 688999999999999999999999999999 99999999999999
Q ss_pred --------hHHHHHHHhhc----Cc-------CCcC------h-------------------HHHHHHHHhhhC-CCCcH
Q psy6094 389 --------KEIITVRDCLS----FE-------CKPS------T-------------------AKIIKELRARLD-MLLAH 423 (455)
Q Consensus 389 --------~~~l~iaa~ls----f~-------~p~~------~-------------------~~~~~~~~~~~~-~~sD~ 423 (455)
..++.++++|| |. +|.. . ++...+++.+|. ..||-
T Consensus 793 ~~~Q~~~lpy~i~lvsaLsv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~sd~ 872 (1172)
T KOG0926|consen 793 TSDQHNLLPYNIALVSALSVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLDSDA 872 (1172)
T ss_pred HHHhhcchhHHHHHHHHHhccchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCCccH
Confidence 34566777787 11 1111 0 011234566787 77999
Q ss_pred HHHHHHHHHHhcCCCCchHhHHHhh
Q psy6094 424 KLSHPGTTAWGDPNEGNILHCCSGF 448 (455)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~c~~~ 448 (455)
++++.+..++..+.++ ..||.++
T Consensus 873 l~Ll~Av~a~ey~~~~--~rfc~~n 895 (1172)
T KOG0926|consen 873 LVLLSAVSAAEYAENG--MRFCEAN 895 (1172)
T ss_pred HHHHHHHHHHHhhhhc--chhHHhc
Confidence 9999999999888775 4599985
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6.9e-65 Score=554.98 Aligned_cols=336 Identities=25% Similarity=0.303 Sum_probs=289.4
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh---------------------------hhcC----CCC--
Q psy6094 56 LPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL---------------------------KRSE----TQQ-- 101 (455)
Q Consensus 56 lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~---------------------------e~~~----~vg-- 101 (455)
||++.+.++|+++|.+|+++||+|+|||||||++| ++++ +++. .||
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 79999999999999999999999999999999999 7774 2222 233
Q ss_pred ----------------ChHHHHHhc-cCCCCcCcc-------------hHHHHHHHHHHHHhcCCCCeEEEEccCC----
Q psy6094 102 ----------------YPNDVLNML-KDPELEGVN-------------NDVIFSLLQHICTTQRPGAILVYCTYTF---- 147 (455)
Q Consensus 102 ----------------~p~~ll~~l-~d~~L~~~~-------------~D~ll~~lk~il~~~~~~~k~ilmSAT~---- 147 (455)
+++.|++++ .++.|.+|+ +|+++++++++....++++|+|+||||+
T Consensus 81 vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~ 160 (819)
T TIGR01970 81 VRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGER 160 (819)
T ss_pred EccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH
Confidence 245588988 888899888 6788888888875678999999999999
Q ss_pred -------------CCC-ccceEEeehhhhhhhhccCCCCChHHHHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCC
Q psy6094 148 -------------MGV-SPMKVFFCKNVLQRLMKGVGANSPKRWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFN 213 (455)
Q Consensus 148 -------------~g~-~pv~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~ 213 (455)
+|+ |||+.+|++.....++... ....+..++. ..+|+|||||||+++|+.+++.|.+..
T Consensus 161 l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~---v~~~l~~~l~-~~~g~iLVFlpg~~eI~~l~~~L~~~~--- 233 (819)
T TIGR01970 161 LSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDA---VSRAVEHALA-SETGSILVFLPGQAEIRRVQEQLAERL--- 233 (819)
T ss_pred HHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHH---HHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHhhc---
Confidence 578 8999888754221111000 0011222332 457999999999999999999998742
Q ss_pred CCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhh
Q psy6094 214 SSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLAN 293 (455)
Q Consensus 214 ~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~ 293 (455)
..++.+++|||+|++++|.++|++|++|++||||||||||||||||+|+||||+|++|...||+.+|++.|.++||||++
T Consensus 234 ~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkas 313 (819)
T TIGR01970 234 DSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQAS 313 (819)
T ss_pred CCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHH
Confidence 13589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCCCeEEecCChh---hhccCCCCcccccC-hHHHHHHHh---------hhcCCCChhhHHhHHhhhhhc
Q psy6094 294 AKQRRGRAGRTLKRSETQQYPND---VLNMLKDPELEGVN-NDVIFSLLQ---------HICTTQRPGAILVFLPGWDTI 360 (455)
Q Consensus 294 ~~QR~GRaGR~~~G~c~~L~t~~---~~~~~~~PEi~r~~-~~~~L~~l~---------~~~~~P~~~~i~~al~~L~~l 360 (455)
|.||+|||||+++|.||+||+++ .|.+++.|||+|++ ++++|+++. .|++||+.+++..|++.|..+
T Consensus 314 a~QR~GRAGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~~L~~l 393 (819)
T TIGR01970 314 ATQRAGRAGRLEPGVCYRLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQLLQRL 393 (819)
T ss_pred HHhhhhhcCCCCCCEEEEeCCHHHHHhhhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHHHHHHHC
Confidence 99999999999999999999954 46789999999999 999997654 689999999999999999999
Q ss_pred ccccCCCCCCcccCChHHHHHhhCCCCh---------------hHHHHHHHhhcCcCC
Q psy6094 361 NSLHRSMCQSSFFNSCLLYEFAMVDNKP---------------KEIITVRDCLSFECK 403 (455)
Q Consensus 361 gald~~~~l~~~~~T~lG~~l~~lp~~p---------------~~~l~iaa~lsf~~p 403 (455)
||||.+++| |++|+.|+.||++| +++++|||+|+-..+
T Consensus 394 gald~~~~l-----T~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~ 446 (819)
T TIGR01970 394 GALDAQGRL-----TAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGL 446 (819)
T ss_pred CCCCCCCCc-----CHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCC
Confidence 999999999 99999999999999 778999999995443
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=9.3e-64 Score=547.13 Aligned_cols=322 Identities=26% Similarity=0.350 Sum_probs=279.0
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh---------------------------hhcCC----CC-
Q psy6094 55 KLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL---------------------------KRSET----QQ- 101 (455)
Q Consensus 55 ~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~---------------------------e~~~~----vg- 101 (455)
.||+|.+.++|++++.+++++|++|+|||||||++| ++++ ++++. ||
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 499999999999999999999999999999999999 7775 22222 22
Q ss_pred -----------------ChHHHHHhc-cCCCCcCcc-------------hHHHHHHHHHHHHhcCCCCeEEEEccCC---
Q psy6094 102 -----------------YPNDVLNML-KDPELEGVN-------------NDVIFSLLQHICTTQRPGAILVYCTYTF--- 147 (455)
Q Consensus 102 -----------------~p~~ll~~l-~d~~L~~~~-------------~D~ll~~lk~il~~~~~~~k~ilmSAT~--- 147 (455)
+|+.|++++ .|+.|.+|+ +|+++++++++++..++++|+|+||||+
T Consensus 83 ~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~ 162 (812)
T PRK11664 83 RMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND 162 (812)
T ss_pred EecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH
Confidence 355688988 888888888 7889999998886678999999999999
Q ss_pred --------------CCC-ccceEEeehhhhhhhhccCCCCChHHHHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCC
Q psy6094 148 --------------MGV-SPMKVFFCKNVLQRLMKGVGANSPKRWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFF 212 (455)
Q Consensus 148 --------------~g~-~pv~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~ 212 (455)
+|+ |||+.+|++.....++... ....+...+. ...|+|||||||.++|+.+++.|++..
T Consensus 163 ~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~---v~~~l~~~l~-~~~g~iLVFlpg~~ei~~l~~~L~~~~-- 236 (812)
T PRK11664 163 RLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEA---VARATAELLR-QESGSLLLFLPGVGEIQRVQEQLASRV-- 236 (812)
T ss_pred HHHHhcCCCCEEEecCccccceEEeccCchhhhHHHH---HHHHHHHHHH-hCCCCEEEEcCCHHHHHHHHHHHHHhc--
Confidence 578 8998888754322111000 0001223333 457999999999999999999998632
Q ss_pred CCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchh
Q psy6094 213 NSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLA 292 (455)
Q Consensus 213 ~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka 292 (455)
..++.+++|||+|++++|.++|+++++|++||||||||||||||||+|+||||+|++|...||+.+|++.|.++||||+
T Consensus 237 -~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSka 315 (812)
T PRK11664 237 -ASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQA 315 (812)
T ss_pred -cCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechh
Confidence 1258899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhcccCCCCCCeEEecCChh---hhccCCCCcccccC-hHHHHHHHh---------hhcCCCChhhHHhHHhhhhh
Q psy6094 293 NAKQRRGRAGRTLKRSETQQYPND---VLNMLKDPELEGVN-NDVIFSLLQ---------HICTTQRPGAILVFLPGWDT 359 (455)
Q Consensus 293 ~~~QR~GRaGR~~~G~c~~L~t~~---~~~~~~~PEi~r~~-~~~~L~~l~---------~~~~~P~~~~i~~al~~L~~ 359 (455)
+|.||+|||||+++|.||+||+++ .+.+++.|||+|++ ++++|.+++ .|++||++.++..|++.|..
T Consensus 316 sa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~~L~~ 395 (812)
T PRK11664 316 SMTQRAGRAGRLEPGICLHLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQQ 395 (812)
T ss_pred hhhhhccccCCCCCcEEEEecCHHHHhhCccCCCCceeccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999954 46789999999999 999997654 68999999999999999999
Q ss_pred cccccCCCCCCcccCChHHHHHhhCCCCh
Q psy6094 360 INSLHRSMCQSSFFNSCLLYEFAMVDNKP 388 (455)
Q Consensus 360 lgald~~~~l~~~~~T~lG~~l~~lp~~p 388 (455)
+||||++++| |++|+.|+.||++|
T Consensus 396 lgald~~g~l-----T~~G~~m~~lp~~P 419 (812)
T PRK11664 396 LGALDGQGRL-----TARGRKMAALGNDP 419 (812)
T ss_pred CCCCCCCCCc-----CHHHHHHHhcCCch
Confidence 9999999999 99999999999999
No 12
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.2e-46 Score=403.17 Aligned_cols=293 Identities=17% Similarity=0.223 Sum_probs=219.0
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhhh---------h--------cCCCC--ChHH---------HHH---
Q psy6094 61 MRDAVLDMVRNNQITVISGETGSGPPLHLD-FITLK---------R--------SETQQ--YPND---------VLN--- 108 (455)
Q Consensus 61 ~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~e---------~--------~~~vg--~p~~---------ll~--- 108 (455)
.|+++++.+.+|+++|++|+||||||+|+| ++++. . +.++. .|++ +.+
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg 247 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLG 247 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence 588999999999999999999999999999 55420 0 01122 3554 111
Q ss_pred -----------------------------hc------cCCCCcCcc-------------hHHHHHHHHHHHHhcCCCCeE
Q psy6094 109 -----------------------------ML------KDPELEGVN-------------NDVIFSLLQHICTTQRPGAIL 140 (455)
Q Consensus 109 -----------------------------~l------~d~~L~~~~-------------~D~ll~~lk~il~~~~~~~k~ 140 (455)
.+ .++.|.+++ +|+++++++++. . ...|+
T Consensus 248 ~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~-~--~~rq~ 324 (675)
T PHA02653 248 FDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHI-D--KIRSL 324 (675)
T ss_pred ccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccccccccCCEEEccccccCccchhHHHHHHHHhh-h--hcCEE
Confidence 01 111233333 888888888765 2 22489
Q ss_pred EEEccCC-------------------CCC--ccceEEeehhhhh-----hhhccCCCCChHHHHHHHHc---cCCCCEEE
Q psy6094 141 VYCTYTF-------------------MGV--SPMKVFFCKNVLQ-----RLMKGVGANSPKRWVKLLRS---MLVVPILV 191 (455)
Q Consensus 141 ilmSAT~-------------------~g~--~pv~~~~l~~~~~-----~~~~~~~~~~~~~l~~~i~~---~~~g~iLV 191 (455)
++||||+ +|+ |||+.+|+++... .+.. .....+...+.. ..+|++||
T Consensus 325 ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~----~~k~~~l~~L~~~~~~~~g~iLV 400 (675)
T PHA02653 325 FLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIE----EEKKNIVTALKKYTPPKGSSGIV 400 (675)
T ss_pred EEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhH----HHHHHHHHHHHHhhcccCCcEEE
Confidence 9999999 455 7888888765321 1110 001112222322 34689999
Q ss_pred EcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCC-CCCceEEEEeCCCCccCCCCCCeeEEEeCCCC
Q psy6094 192 FLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTP-PEGVRKIVLATNIAETSITIDDIVYVVDCGKT 270 (455)
Q Consensus 192 Flp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~-~~g~~kVivaTniae~gitI~~V~~VID~g~~ 270 (455)
||||+.+++.+++.|.+.. +++.+.+|||++++.++ +++.+ ++|+++|||||||||||||||||++|||+|++
T Consensus 401 Flpg~~ei~~l~~~L~~~~----~~~~v~~LHG~Lsq~eq--~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~ 474 (675)
T PHA02653 401 FVASVSQCEEYKKYLEKRL----PIYDFYIIHGKVPNIDE--ILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRV 474 (675)
T ss_pred EECcHHHHHHHHHHHHhhc----CCceEEeccCCcCHHHH--HHHHHhccCceeEEeccChhhccccccCeeEEEECCCc
Confidence 9999999999999998752 24889999999998643 33343 67999999999999999999999999999988
Q ss_pred cccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCChhhhccCCCCcccccC----hHHHHHHHh-------
Q psy6094 271 KMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPNDVLNMLKDPELEGVN----NDVIFSLLQ------- 339 (455)
Q Consensus 271 k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~~~~~~~~PEi~r~~----~~~~L~~l~------- 339 (455)
|.+. +..|+ ..|+|+++|.||+|||||+++|.||+||+++.+ .| |.|.+ .+++|.+.+
T Consensus 475 k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~----~p-I~ri~~~~L~~~vL~lk~~g~~~~~ 543 (675)
T PHA02653 475 YVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLL----KP-IKRIDSEFLHNYILYAKYFNLTLPE 543 (675)
T ss_pred cCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHh----HH-HHHHhHHHHHHHHHHHHHcCCCCcc
Confidence 7663 34443 469999999999999999999999999998875 24 66655 567775543
Q ss_pred -hhcCCCChhhHHhHHhhhhhcccccCCCCCCcccCChH--HHHHhhC
Q psy6094 340 -HICTTQRPGAILVFLPGWDTINSLHRSMCQSSFFNSCL--LYEFAMV 384 (455)
Q Consensus 340 -~~~~~P~~~~i~~al~~L~~lgald~~~~l~~~~~T~l--G~~l~~l 384 (455)
.|++||+++++..|++.|..+||+|+ +| |.| |+.|+.+
T Consensus 544 ~~~ldpP~~~~l~~A~~~L~~lga~~~--~l-----~~l~~~~~~~~~ 584 (675)
T PHA02653 544 DLFVIPSNLDRLRKTEEYIDSFNISIE--KW-----YEILSNYYVNML 584 (675)
T ss_pred cccCCCCCHHHHHHHHHHHHHcCCCch--hh-----hhhhccccHHHH
Confidence 58999999999999999999998865 68 999 9999998
No 13
>KOG0921|consensus
Probab=100.00 E-value=1.7e-46 Score=390.71 Aligned_cols=401 Identities=25% Similarity=0.385 Sum_probs=314.0
Q ss_pred HHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh-----------------------
Q psy6094 39 RKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL----------------------- 94 (455)
Q Consensus 39 ~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~----------------------- 94 (455)
+......+...+++|..||+-.++.+|++++..|++++|.|+||||||||+. |||+
T Consensus 360 ~~~~d~e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisa 439 (1282)
T KOG0921|consen 360 RFKRDEALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISA 439 (1282)
T ss_pred hhhcccchhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccch
Confidence 3345678889999999999999999999999999999999999999999999 9998
Q ss_pred ---------h----hcCCCCC-hHH------------------HHHhccCCCCcCc-------------chHHHHHHHHH
Q psy6094 95 ---------K----RSETQQY-PND------------------VLNMLKDPELEGV-------------NNDVIFSLLQH 129 (455)
Q Consensus 95 ---------e----~~~~vg~-p~~------------------ll~~l~d~~L~~~-------------~~D~ll~~lk~ 129 (455)
+ .|+.+|| ||. +++++.+ .+... .+|+++.+++.
T Consensus 440 isiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~-glrg~sh~i~deiherdv~~dfll~~lr~ 518 (1282)
T KOG0921|consen 440 ISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMEN-GLRGISHVIIDEIHERDVDTDFVLIVLRE 518 (1282)
T ss_pred HHHHHHHHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhh-cccccccccchhhhhhccchHHHHHHHHh
Confidence 2 2444443 332 5555511 11111 19999999999
Q ss_pred HHHhcCCCCeEEEEccCC-----------------CCC-ccceEEeehhhhhhhhccCCC---------------CCh--
Q psy6094 130 ICTTQRPGAILVYCTYTF-----------------MGV-SPMKVFFCKNVLQRLMKGVGA---------------NSP-- 174 (455)
Q Consensus 130 il~~~~~~~k~ilmSAT~-----------------~g~-~pv~~~~l~~~~~~~~~~~~~---------------~~~-- 174 (455)
+. ..-++++++|||||+ +|+ ||+..+|++++.+........ ..+
T Consensus 519 m~-~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK 597 (1282)
T KOG0921|consen 519 MI-STYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDK 597 (1282)
T ss_pred hh-ccchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhc
Confidence 98 778899999999999 788 999999988876432211100 000
Q ss_pred -HH----------------------------H----HHHHH-ccCCCCEEEEcCCHHHHHHHHHHHHhcCCCC-CCCeEE
Q psy6094 175 -KR----------------------------W----VKLLR-SMLVVPILVFLPGWDTINSLHRSMCQSSFFN-SSRFQI 219 (455)
Q Consensus 175 -~~----------------------------l----~~~i~-~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~-~~~~~v 219 (455)
+. + ..++. ...+|.||||+|++++|..|+..|.....++ ...+.+
T Consensus 598 ~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~i 677 (1282)
T KOG0921|consen 598 GRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEI 677 (1282)
T ss_pred ccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhccc
Confidence 00 1 11111 1568999999999999999999998876653 557899
Q ss_pred EeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhc
Q psy6094 220 IPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRG 299 (455)
Q Consensus 220 ~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~G 299 (455)
+|+|+.++.++|.+||++.+.|.+|+|++||+||++|||++++||||.++.+.+.|-..+++..+.++|.||-+..||+|
T Consensus 678 lp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~g 757 (1282)
T KOG0921|consen 678 LPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKG 757 (1282)
T ss_pred ccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCeEEecCCh---hhhccCCCCcccccC-hHHHH-----------HHHhhhcCCCChhhHHhHHhhhhhccccc
Q psy6094 300 RAGRTLKRSETQQYPN---DVLNMLKDPELEGVN-NDVIF-----------SLLQHICTTQRPGAILVFLPGWDTINSLH 364 (455)
Q Consensus 300 RaGR~~~G~c~~L~t~---~~~~~~~~PEi~r~~-~~~~L-----------~~l~~~~~~P~~~~i~~al~~L~~lgald 364 (455)
|+||+++|.||++.+. +.++++..|||.|.+ .++.| .|+...+.||+..++..+-..|..++++|
T Consensus 758 r~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld 837 (1282)
T KOG0921|consen 758 RAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALD 837 (1282)
T ss_pred cCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhh
Confidence 9999999999999994 445677788888888 66655 56668999999999999999999999999
Q ss_pred CCCCCCcccCChHHHHHhhCCCCh---------------hHHHHHHHhhcCcCCcChH----HHHHHHHhhhC--CCCcH
Q psy6094 365 RSMCQSSFFNSCLLYEFAMVDNKP---------------KEIITVRDCLSFECKPSTA----KIIKELRARLD--MLLAH 423 (455)
Q Consensus 365 ~~~~l~~~~~T~lG~~l~~lp~~p---------------~~~l~iaa~lsf~~p~~~~----~~~~~~~~~~~--~~sD~ 423 (455)
.++.+ |+||+.++.+|+.| +-|...|+..+|..|+... ......++.|+ ..|||
T Consensus 838 ~n~el-----t~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g~kfsdh 912 (1282)
T KOG0921|consen 838 ANDEL-----TPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNKFSDH 912 (1282)
T ss_pred ccCcc-----cchhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhhccccccccc
Confidence 99999 99999999999999 4455566666655443321 12222344454 44555
Q ss_pred HHHH-----HHHHHHhcCCCCchHhHHHhh
Q psy6094 424 KLSH-----PGTTAWGDPNEGNILHCCSGF 448 (455)
Q Consensus 424 ~~~~-----~~~~~~~~~~~~~~~~~c~~~ 448 (455)
.+.. ..++.|..+-. -++||..|
T Consensus 913 va~~~v~q~~r~~~q~ga~~--e~efc~r~ 940 (1282)
T KOG0921|consen 913 VAIVSVIQGYREAVQMGAAA--EREFCERY 940 (1282)
T ss_pred hhhhhhhhhhHHHhhhhhhh--hhhHhHhh
Confidence 5554 44555544421 13666654
No 14
>KOG0330|consensus
Probab=100.00 E-value=8.6e-36 Score=288.42 Aligned_cols=264 Identities=18% Similarity=0.207 Sum_probs=210.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcc--cchh---hhhh-----------
Q psy6094 31 AAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPP--LHLD---FITL----------- 94 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKT--tqlp---~ll~----------- 94 (455)
..-+.+|.+...++..-+..+.-+..-...+|.+.|+.+.+|+++|+.|+|||||| +++| .+++
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLt 136 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLT 136 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEec
Confidence 44566888999999999999988888888999999999999999999999999999 3444 2332
Q ss_pred --------------hhcCC----------------------------CCChHHHHHhcc-CC--CCcCcc------hHHH
Q psy6094 95 --------------KRSET----------------------------QQYPNDVLNMLK-DP--ELEGVN------NDVI 123 (455)
Q Consensus 95 --------------e~~~~----------------------------vg~p~~ll~~l~-d~--~L~~~~------~D~l 123 (455)
..|.. |++|++|.++|. .. .|...+ +|.+
T Consensus 137 PtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrl 216 (476)
T KOG0330|consen 137 PTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRL 216 (476)
T ss_pred CcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhh
Confidence 11111 225777888772 22 222322 7777
Q ss_pred HHH-----HHHHHHhcCCCCeEEEEccCCCCC----------ccceEE----e--ehhhhhhhhccCCCCChHHHHHHHH
Q psy6094 124 FSL-----LQHICTTQRPGAILVYCTYTFMGV----------SPMKVF----F--CKNVLQRLMKGVGANSPKRWVKLLR 182 (455)
Q Consensus 124 l~~-----lk~il~~~~~~~k~ilmSAT~~g~----------~pv~~~----~--l~~~~~~~~~~~~~~~~~~l~~~i~ 182 (455)
|.+ |..+++..+.+.|.+||||||+.. -|+++. | ++...+.|+......++..|+.++.
T Consensus 217 Ld~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~ 296 (476)
T KOG0330|consen 217 LDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLN 296 (476)
T ss_pred hhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHH
Confidence 743 677776788999999999999321 233222 2 4455567777777777778999998
Q ss_pred ccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCee
Q psy6094 183 SMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIV 262 (455)
Q Consensus 183 ~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~ 262 (455)
...+++++|||+++...+.++-.|+..+ +.+++|||+|++..|...|+.|++|.+.|+||||||+||+|||.|+
T Consensus 297 e~~g~s~iVF~~t~~tt~~la~~L~~lg------~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd 370 (476)
T KOG0330|consen 297 ELAGNSVIVFCNTCNTTRFLALLLRNLG------FQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVD 370 (476)
T ss_pred hhcCCcEEEEEeccchHHHHHHHHHhcC------cceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCce
Confidence 8888999999999999999999999885 8999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChhhh
Q psy6094 263 YVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPNDVL 318 (455)
Q Consensus 263 ~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~~~ 318 (455)
+||| ||. |.+-..|+||+||+||+|. |.++.|.|+.+.
T Consensus 371 ~VVN--------yDi----------P~~skDYIHRvGRtaRaGrsG~~ItlVtqyDv 409 (476)
T KOG0330|consen 371 VVVN--------YDI----------PTHSKDYIHRVGRTARAGRSGKAITLVTQYDV 409 (476)
T ss_pred EEEe--------cCC----------CCcHHHHHHHcccccccCCCcceEEEEehhhh
Confidence 9999 553 3344568899999999998 999999996544
No 15
>KOG0331|consensus
Probab=100.00 E-value=4.7e-35 Score=299.44 Aligned_cols=257 Identities=18% Similarity=0.251 Sum_probs=203.7
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcc--cchh---hhhh----------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPP--LHLD---FITL---------------- 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKT--tqlp---~ll~---------------- 94 (455)
.|....+++....++..++.--.+++|.+.++.+..|+++|.+|.|||||| +++| .+..
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 678888999999999999999999999999999999999999999999999 4566 2221
Q ss_pred -----------------------------------------hhcC--CCCChHHHHHhc--cCCCCcCcc------hHHH
Q psy6094 95 -----------------------------------------KRSE--TQQYPNDVLNML--KDPELEGVN------NDVI 123 (455)
Q Consensus 95 -----------------------------------------e~~~--~vg~p~~ll~~l--~d~~L~~~~------~D~l 123 (455)
++|. .+|+|++|+++| ..-.|..++ +|.|
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 1222 133688899988 566777777 9999
Q ss_pred HHH-----HHHHHHhc-CCCCeEEEEccCCCCC-ccceEEeehhhhhhhhcc-----------------CCCCChHHHHH
Q psy6094 124 FSL-----LQHICTTQ-RPGAILVYCTYTFMGV-SPMKVFFCKNVLQRLMKG-----------------VGANSPKRWVK 179 (455)
Q Consensus 124 l~~-----lk~il~~~-~~~~k~ilmSAT~~g~-~pv~~~~l~~~~~~~~~~-----------------~~~~~~~~l~~ 179 (455)
|++ ++.++... +++.|++++|||+|+. +.+...|+.++.+..+.. ....+...+..
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~ 331 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGK 331 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHH
Confidence 965 88888777 6777899999999877 666555555443211100 00001111223
Q ss_pred HHH---ccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCC
Q psy6094 180 LLR---SMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSI 256 (455)
Q Consensus 180 ~i~---~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gi 256 (455)
.+. ...+|.+||||.++..++++.+.|+..+ +.+.+|||+++|.+|..+++.|++|+..|+||||||+|||
T Consensus 332 lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~------~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGL 405 (519)
T KOG0331|consen 332 LLEDISSDSEGKVIIFCETKRTCDELARNLRRKG------WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGL 405 (519)
T ss_pred HHHHHhccCCCcEEEEecchhhHHHHHHHHHhcC------cceeeecccccHHHHHHHHHhcccCCcceEEEcccccccC
Confidence 332 3578899999999999999999999864 7899999999999999999999999999999999999999
Q ss_pred CCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 257 TIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 257 tI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
|||||++||| ||++.++ +.|.||.||+||.+. |.+|.+|+.+
T Consensus 406 Di~dV~lVIn--------ydfP~~v----------EdYVHRiGRTGRa~~~G~A~tfft~~ 448 (519)
T KOG0331|consen 406 DVPDVDLVIN--------YDFPNNV----------EDYVHRIGRTGRAGKKGTAITFFTSD 448 (519)
T ss_pred CCccccEEEe--------CCCCCCH----------HHHHhhcCccccCCCCceEEEEEeHH
Confidence 9999999999 7666554 456699999999776 9999999954
No 16
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.97 E-value=2.1e-31 Score=279.03 Aligned_cols=257 Identities=14% Similarity=0.147 Sum_probs=188.0
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh--------------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL-------------------- 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~-------------------- 94 (455)
.|....+++...+.++.-+.-..+++|.++++.+.++++++++|+||||||+.+. .++.
T Consensus 5 ~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreL 84 (460)
T PRK11776 5 AFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTREL 84 (460)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHH
Confidence 3666678888888888888888999999999999999999999999999995532 2222
Q ss_pred ---------hh-----cC------------------------CCCChHHHHHhc--cCCCCcCcc------hHHHH----
Q psy6094 95 ---------KR-----SE------------------------TQQYPNDVLNML--KDPELEGVN------NDVIF---- 124 (455)
Q Consensus 95 ---------e~-----~~------------------------~vg~p~~ll~~l--~d~~L~~~~------~D~ll---- 124 (455)
.. +. .||+|.++++++ ....+.+++ +|.++
T Consensus 85 a~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~ 164 (460)
T PRK11776 85 ADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGF 164 (460)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCc
Confidence 00 00 112455566666 223344554 66655
Q ss_pred -HHHHHHHHhcCCCCeEEEEccCCCCC----------ccceEEeehh-----hhhhhhccCCCCChHHHHHHHHccCCCC
Q psy6094 125 -SLLQHICTTQRPGAILVYCTYTFMGV----------SPMKVFFCKN-----VLQRLMKGVGANSPKRWVKLLRSMLVVP 188 (455)
Q Consensus 125 -~~lk~il~~~~~~~k~ilmSAT~~g~----------~pv~~~~l~~-----~~~~~~~~~~~~~~~~l~~~i~~~~~g~ 188 (455)
..++.++...+++.|+++||||++.. .|........ +.+.+.......+...+...+....++.
T Consensus 165 ~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~ 244 (460)
T PRK11776 165 QDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRLLLHHQPES 244 (460)
T ss_pred HHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCc
Confidence 23666776677889999999999432 1221111000 0011111111112223455555566788
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCC
Q psy6094 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCG 268 (455)
Q Consensus 189 iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g 268 (455)
+||||+++.+++.+++.|...+ +.+..+||++++.+|..+++.|++|..+|+|||+++++|||||+|++|||++
T Consensus 245 ~lVF~~t~~~~~~l~~~L~~~~------~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d 318 (460)
T PRK11776 245 CVVFCNTKKECQEVADALNAQG------FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYE 318 (460)
T ss_pred eEEEECCHHHHHHHHHHHHhCC------CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEec
Confidence 9999999999999999998874 7899999999999999999999999999999999999999999999999966
Q ss_pred CCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 269 KTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 269 ~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
++ -+..+|.||+|||||.+. |.||.|++.+
T Consensus 319 ~p------------------~~~~~yiqR~GRtGR~g~~G~ai~l~~~~ 349 (460)
T PRK11776 319 LA------------------RDPEVHVHRIGRTGRAGSKGLALSLVAPE 349 (460)
T ss_pred CC------------------CCHhHhhhhcccccCCCCcceEEEEEchh
Confidence 53 345678899999999887 9999999954
No 17
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.2e-31 Score=282.80 Aligned_cols=257 Identities=18% Similarity=0.252 Sum_probs=195.8
Q ss_pred HHHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc--hh---hhh--h-------------
Q psy6094 35 KEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH--LD---FIT--L------------- 94 (455)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq--lp---~ll--~------------- 94 (455)
..|.+..+++...+.+...+..-..++|.+.++.+..|++++++|+||||||.+ +| .+. .
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 457777799999999999999999999999999999999999999999999933 44 221 1
Q ss_pred ---------------------------------------hhc--CCCCChHHHHHhc--cCCCCcCcc------hHHHHH
Q psy6094 95 ---------------------------------------KRS--ETQQYPNDVLNML--KDPELEGVN------NDVIFS 125 (455)
Q Consensus 95 ---------------------------------------e~~--~~vg~p~~ll~~l--~d~~L~~~~------~D~ll~ 125 (455)
+.| ..||+|+||++++ ..-.+.++. +|.||+
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc
Confidence 111 1133677888888 333455555 888885
Q ss_pred H-----HHHHHHhcCCCCeEEEEccCCCCC-ccceEEeehhh-----------------hhhhhccCCCC-ChHHHHHHH
Q psy6094 126 L-----LQHICTTQRPGAILVYCTYTFMGV-SPMKVFFCKNV-----------------LQRLMKGVGAN-SPKRWVKLL 181 (455)
Q Consensus 126 ~-----lk~il~~~~~~~k~ilmSAT~~g~-~pv~~~~l~~~-----------------~~~~~~~~~~~-~~~~l~~~i 181 (455)
+ +..++...+++.|+++||||++.. -.....|+.++ .+.|+...... +...+...+
T Consensus 189 ~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll 268 (513)
T COG0513 189 MGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLL 268 (513)
T ss_pred CCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 4 666776677899999999999442 11111222211 12222222222 233355555
Q ss_pred HccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCe
Q psy6094 182 RSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDI 261 (455)
Q Consensus 182 ~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V 261 (455)
.....+.+|||++++..++.++..|...+ +.+..|||+|+|++|.++++.|++|..+|+||||||+||||||+|
T Consensus 269 ~~~~~~~~IVF~~tk~~~~~l~~~l~~~g------~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v 342 (513)
T COG0513 269 KDEDEGRVIVFVRTKRLVEELAESLRKRG------FKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDV 342 (513)
T ss_pred hcCCCCeEEEEeCcHHHHHHHHHHHHHCC------CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccc
Confidence 55666789999999999999999999875 899999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCCh
Q psy6094 262 VYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPN 315 (455)
Q Consensus 262 ~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~ 315 (455)
.+||| ||.+. +...|.||+||+||.|. |.++.|++.
T Consensus 343 ~~Vin--------yD~p~----------~~e~yvHRiGRTgRaG~~G~ai~fv~~ 379 (513)
T COG0513 343 SHVIN--------YDLPL----------DPEDYVHRIGRTGRAGRKGVAISFVTE 379 (513)
T ss_pred ceeEE--------ccCCC----------CHHHheeccCccccCCCCCeEEEEeCc
Confidence 99999 55443 34556699999999988 999999984
No 18
>KOG0328|consensus
Probab=99.97 E-value=8.5e-31 Score=244.28 Aligned_cols=279 Identities=16% Similarity=0.262 Sum_probs=198.1
Q ss_pred CCCCCccccchhhhccc-cCCcchHHHHHHHHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCc
Q psy6094 7 PKGLTHSVTSWETRQKL-LNDPVLDAAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGP 85 (455)
Q Consensus 7 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGK 85 (455)
-....|+...+++..++ ....++++.|.++..+...+-.|. .....|...+..|..|++||++++.|+||
T Consensus 7 ~~~~~~~~~~feTs~~~~v~~~F~~Mgl~edlLrgiY~yGfe---------kPS~IQqrAi~~IlkGrdViaQaqSGTGK 77 (400)
T KOG0328|consen 7 FTMEDMDTVEFETSEKVKVIPTFDDMGLKEDLLRGIYAYGFE---------KPSAIQQRAIPQILKGRDVIAQAQSGTGK 77 (400)
T ss_pred cccccccceeEeeccCcccccchhhcCchHHHHHHHHHhccC---------CchHHHhhhhhhhhcccceEEEecCCCCc
Confidence 33445666667776655 344556666666666655444333 33455667777788999999999999999
Q ss_pred ccchh-hhhh------------------------------------------hhcCC---------------CCChHHHH
Q psy6094 86 PLHLD-FITL------------------------------------------KRSET---------------QQYPNDVL 107 (455)
Q Consensus 86 Ttqlp-~ll~------------------------------------------e~~~~---------------vg~p~~ll 107 (455)
|..+. -+|. -.|.. .|+|++++
T Consensus 78 Ta~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~ 157 (400)
T KOG0328|consen 78 TATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVL 157 (400)
T ss_pred eEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHH
Confidence 95554 3332 01122 22588888
Q ss_pred HhccCCCC--cCcc------hHHHHHH-----HHHHHHhcCCCCeEEEEccCCCCC-ccceEEeehhhhhhhhccCCCCC
Q psy6094 108 NMLKDPEL--EGVN------NDVIFSL-----LQHICTTQRPGAILVYCTYTFMGV-SPMKVFFCKNVLQRLMKGVGANS 173 (455)
Q Consensus 108 ~~l~d~~L--~~~~------~D~ll~~-----lk~il~~~~~~~k~ilmSAT~~g~-~pv~~~~l~~~~~~~~~~~~~~~ 173 (455)
+++.-..| ..+. +|.||.- +-++.+..+|+.|++++|||+|.. .....+|+.+++..+++...-..
T Consensus 158 dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltl 237 (400)
T KOG0328|consen 158 DMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTL 237 (400)
T ss_pred HHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCch
Confidence 87722222 2222 8888843 455665678999999999999665 55555555555544333222111
Q ss_pred ------------hHH----HHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcC
Q psy6094 174 ------------PKR----WVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNT 237 (455)
Q Consensus 174 ------------~~~----l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~ 237 (455)
++. |.++.....-.+.++||+|++.+++|.+.|+.. +|.|.++||+|++++|.+++..
T Consensus 238 EgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~------nftVssmHGDm~qkERd~im~d 311 (400)
T KOG0328|consen 238 EGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA------NFTVSSMHGDMEQKERDKIMND 311 (400)
T ss_pred hhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh------CceeeeccCCcchhHHHHHHHH
Confidence 111 222222244568999999999999999999986 4999999999999999999999
Q ss_pred CCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 238 PPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 238 ~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
|+.|+.+|+++|||-+||+|++.|..||| ||. |..+..|.||.||+||.|. |.++.+...+
T Consensus 312 FRsg~SrvLitTDVwaRGiDv~qVslviN--------YDL----------P~nre~YIHRIGRSGRFGRkGvainFVk~~ 373 (400)
T KOG0328|consen 312 FRSGKSRVLITTDVWARGIDVQQVSLVIN--------YDL----------PNNRELYIHRIGRSGRFGRKGVAINFVKSD 373 (400)
T ss_pred hhcCCceEEEEechhhccCCcceeEEEEe--------cCC----------CccHHHHhhhhccccccCCcceEEEEecHH
Confidence 99999999999999999999999999999 553 3445778899999999988 9999999865
Q ss_pred hh
Q psy6094 317 VL 318 (455)
Q Consensus 317 ~~ 318 (455)
++
T Consensus 374 d~ 375 (400)
T KOG0328|consen 374 DL 375 (400)
T ss_pred HH
Confidence 43
No 19
>PRK01172 ski2-like helicase; Provisional
Probab=99.97 E-value=6.8e-30 Score=279.21 Aligned_cols=342 Identities=13% Similarity=0.104 Sum_probs=212.7
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhhh--------------------
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITLK-------------------- 95 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~e-------------------- 95 (455)
|.+..+.+.+.+.++.+.. ..|++|.++++.+.++++++++||||||||++.. .++..
T Consensus 3 ~~~~~l~~~~~~~~~~~~~-~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~ 81 (674)
T PRK01172 3 ISDLGYDDEFLNLFTGNDF-ELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEK 81 (674)
T ss_pred HhhcCCCHHHHHHHhhCCC-CCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHH
Confidence 4455677888888877665 4799999999999999999999999999997654 33320
Q ss_pred ---------hcCCCC---------------------ChHHHHHhc-cCC-CCcCcc------hHH---------HHHHHH
Q psy6094 96 ---------RSETQQ---------------------YPNDVLNML-KDP-ELEGVN------NDV---------IFSLLQ 128 (455)
Q Consensus 96 ---------~~~~vg---------------------~p~~ll~~l-~d~-~L~~~~------~D~---------ll~~lk 128 (455)
.|..++ +|.++...+ .++ .+.+++ .+. +-.++.
T Consensus 82 ~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~ 161 (674)
T PRK01172 82 YEELSRLRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLS 161 (674)
T ss_pred HHHHHHHhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHH
Confidence 011111 122211111 111 122222 121 112233
Q ss_pred HHHHhcCCCCeEEEEccCCCC-----------------C-ccceEE--eehhhhhhhhccCCCCChHHHHHHHHc--cCC
Q psy6094 129 HICTTQRPGAILVYCTYTFMG-----------------V-SPMKVF--FCKNVLQRLMKGVGANSPKRWVKLLRS--MLV 186 (455)
Q Consensus 129 ~il~~~~~~~k~ilmSAT~~g-----------------~-~pv~~~--~l~~~~~~~~~~~~~~~~~~l~~~i~~--~~~ 186 (455)
.+. ..+++.|+|+||||++. + .|+... |.+.. +....... ...+...+.. ..+
T Consensus 162 ~~~-~~~~~~riI~lSATl~n~~~la~wl~~~~~~~~~r~vpl~~~i~~~~~~---~~~~~~~~-~~~~~~~i~~~~~~~ 236 (674)
T PRK01172 162 SAR-YVNPDARILALSATVSNANELAQWLNASLIKSNFRPVPLKLGILYRKRL---ILDGYERS-QVDINSLIKETVNDG 236 (674)
T ss_pred HHH-hcCcCCcEEEEeCccCCHHHHHHHhCCCccCCCCCCCCeEEEEEecCee---eecccccc-cccHHHHHHHHHhCC
Confidence 322 45678999999999831 2 232211 11110 00000000 0012222221 467
Q ss_pred CCEEEEcCCHHHHHHHHHHHHhcCCCCC-------------------CCeEEEeecCCCChhhHhhhhcCCCCCceEEEE
Q psy6094 187 VPILVFLPGWDTINSLHRSMCQSSFFNS-------------------SRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVL 247 (455)
Q Consensus 187 g~iLVFlp~~~ei~~l~~~L~~~~~~~~-------------------~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kViv 247 (455)
+++||||+++++++.+++.|........ -..-+..+||+|++++|..+++.|++|..+|||
T Consensus 237 ~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLv 316 (674)
T PRK01172 237 GQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIV 316 (674)
T ss_pred CcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 8999999999999999998876421000 012377889999999999999999999999999
Q ss_pred eCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCC---CCeEEecCC-hhh------
Q psy6094 248 ATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTL---KRSETQQYP-NDV------ 317 (455)
Q Consensus 248 aTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~---~G~c~~L~t-~~~------ 317 (455)
||+++++|+|+|+..+||+ +. ..|+. ....++|.+++.||+|||||.+ .|.++.+.. .+.
T Consensus 317 aT~~la~Gvnipa~~VII~-~~---~~~~~------~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~ 386 (674)
T PRK01172 317 ATPTLAAGVNLPARLVIVR-DI---TRYGN------GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKK 386 (674)
T ss_pred ecchhhccCCCcceEEEEc-Cc---eEeCC------CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHH
Confidence 9999999999999887775 22 12321 1235799999999999999987 476666533 221
Q ss_pred -hccCCCC--------cccccC--hHHHH----------HHHh-hhc--CCC-C--hhhHHhHHhhhhhcccccCCCCCC
Q psy6094 318 -LNMLKDP--------ELEGVN--NDVIF----------SLLQ-HIC--TTQ-R--PGAILVFLPGWDTINSLHRSMCQS 370 (455)
Q Consensus 318 -~~~~~~P--------Ei~r~~--~~~~L----------~~l~-~~~--~~P-~--~~~i~~al~~L~~lgald~~~~l~ 370 (455)
+...+.| ++.+.+ ..+.. .|+. .|+ ..+ + .+.++.+++.|.+.|+|+.++.
T Consensus 387 ~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~-- 464 (674)
T PRK01172 387 YLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVT-- 464 (674)
T ss_pred HHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCc--
Confidence 2122222 233332 11111 2221 122 222 2 4678999999999999986543
Q ss_pred cccCChHHHHHhhCCCChhHHHHHHHh
Q psy6094 371 SFFNSCLLYEFAMVDNKPKEIITVRDC 397 (455)
Q Consensus 371 ~~~~T~lG~~l~~lp~~p~~~l~iaa~ 397 (455)
+.+|++|+.++.+|++|+.+..+...
T Consensus 465 -~~~t~lG~~~s~~~l~~~t~~~~~~~ 490 (674)
T PRK01172 465 -LRATRLGKLTSDLYIDPESALILKSA 490 (674)
T ss_pred -EeECHHHHHHHHhCCCHHHHHHHHHH
Confidence 35599999999999999555544433
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.97 E-value=1.7e-30 Score=279.42 Aligned_cols=255 Identities=15% Similarity=0.153 Sum_probs=191.0
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh---------------------
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL--------------------- 94 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~--------------------- 94 (455)
|.+..+++...+.++..+....+++|.++++.+.+++++|++|+||||||.++. .+++
T Consensus 8 f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa 87 (629)
T PRK11634 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELA 87 (629)
T ss_pred HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHH
Confidence 667778888899999999999999999999999999999999999999996543 2221
Q ss_pred --------hh-----c------------------------CCCCChHHHHHhc--cCCCCcCcc------hHHHHH----
Q psy6094 95 --------KR-----S------------------------ETQQYPNDVLNML--KDPELEGVN------NDVIFS---- 125 (455)
Q Consensus 95 --------e~-----~------------------------~~vg~p~~ll~~l--~d~~L~~~~------~D~ll~---- 125 (455)
.. + ..||+|.++++++ ....+.++. +|.++.
T Consensus 88 ~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~ 167 (629)
T PRK11634 88 VQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFI 167 (629)
T ss_pred HHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccH
Confidence 00 0 1123566677766 223345544 666553
Q ss_pred -HHHHHHHhcCCCCeEEEEccCCCCC-ccceEEeehhhh---------------hhhhccCCCCChHHHHHHHHccCCCC
Q psy6094 126 -LLQHICTTQRPGAILVYCTYTFMGV-SPMKVFFCKNVL---------------QRLMKGVGANSPKRWVKLLRSMLVVP 188 (455)
Q Consensus 126 -~lk~il~~~~~~~k~ilmSAT~~g~-~pv~~~~l~~~~---------------~~~~~~~~~~~~~~l~~~i~~~~~g~ 188 (455)
.+..++...+++.|+++||||+|.. ..+...|+.++. +.|+......+...+..++.......
T Consensus 168 ~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~ 247 (629)
T PRK11634 168 EDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247 (629)
T ss_pred HHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhcCCCC
Confidence 2455565667889999999999654 222222222111 11111111122233556666566788
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCC
Q psy6094 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCG 268 (455)
Q Consensus 189 iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g 268 (455)
+||||+++..++.+++.|...+ +.+..+||++++.+|.++++.|++|+.+||||||++++|||||+|++|||++
T Consensus 248 ~IVF~~tk~~a~~l~~~L~~~g------~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d 321 (629)
T PRK11634 248 AIIFVRTKNATLEVAEALERNG------YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYD 321 (629)
T ss_pred EEEEeccHHHHHHHHHHHHhCC------CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeC
Confidence 9999999999999999999864 7899999999999999999999999999999999999999999999999944
Q ss_pred CCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCCh
Q psy6094 269 KTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPN 315 (455)
Q Consensus 269 ~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~ 315 (455)
+ |.+.++|.||+|||||.+. |.|+.+++.
T Consensus 322 ~------------------P~~~e~yvqRiGRtGRaGr~G~ai~~v~~ 351 (629)
T PRK11634 322 I------------------PMDSESYVHRIGRTGRAGRAGRALLFVEN 351 (629)
T ss_pred C------------------CCCHHHHHHHhccccCCCCcceEEEEech
Confidence 3 3456788999999999987 999999984
No 21
>PTZ00110 helicase; Provisional
Probab=99.97 E-value=3.5e-30 Score=274.01 Aligned_cols=257 Identities=18% Similarity=0.198 Sum_probs=188.2
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc--hhhhh--------------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH--LDFIT-------------------- 93 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq--lp~ll-------------------- 93 (455)
.|.+..+.+.+.+.+...+....+++|.+.++.+.+++++|++|+||||||.+ +|.+.
T Consensus 131 ~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~ 210 (545)
T PTZ00110 131 SFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLA 210 (545)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEEC
Confidence 46667788888888998899999999999999999999999999999999953 45111
Q ss_pred h-------------hh----------------------------cCCCCChHHHHHhc--cCCCCcCcc------hHHHH
Q psy6094 94 L-------------KR----------------------------SETQQYPNDVLNML--KDPELEGVN------NDVIF 124 (455)
Q Consensus 94 ~-------------e~----------------------------~~~vg~p~~ll~~l--~d~~L~~~~------~D~ll 124 (455)
+ .. ...|++|.+|++.| ....|..++ +|.++
T Consensus 211 PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~ml 290 (545)
T PTZ00110 211 PTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRML 290 (545)
T ss_pred ChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhh
Confidence 0 00 01122566677766 223455555 77766
Q ss_pred HH-----HHHHHHhcCCCCeEEEEccCCCCC-----------ccceEEe--eh-----hhhhhhhccCCCCChHHHHHHH
Q psy6094 125 SL-----LQHICTTQRPGAILVYCTYTFMGV-----------SPMKVFF--CK-----NVLQRLMKGVGANSPKRWVKLL 181 (455)
Q Consensus 125 ~~-----lk~il~~~~~~~k~ilmSAT~~g~-----------~pv~~~~--l~-----~~~~~~~~~~~~~~~~~l~~~i 181 (455)
.. ++.++...+++.|+++||||++.. .|+.... .+ .+.+.+.......+...+...+
T Consensus 291 d~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll 370 (545)
T PTZ00110 291 DMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLL 370 (545)
T ss_pred hcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHH
Confidence 43 677776778999999999998432 1211110 00 0000000001111122244444
Q ss_pred Hc--cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCC
Q psy6094 182 RS--MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITID 259 (455)
Q Consensus 182 ~~--~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~ 259 (455)
.. ...+.+||||++++.++.+++.|...+ +.+..+||++++++|..+++.|++|..+||||||++++|||||
T Consensus 371 ~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g------~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~ 444 (545)
T PTZ00110 371 QRIMRDGDKILIFVETKKGADFLTKELRLDG------WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVK 444 (545)
T ss_pred HHhcccCCeEEEEecChHHHHHHHHHHHHcC------CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcc
Confidence 43 257899999999999999999998754 7789999999999999999999999999999999999999999
Q ss_pred CeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 260 DIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 260 ~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
+|++||++++ |-+.++|.||+||+||.+. |.||.+++.+
T Consensus 445 ~v~~VI~~d~------------------P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~ 484 (545)
T PTZ00110 445 DVKYVINFDF------------------PNQIEDYVHRIGRTGRAGAKGASYTFLTPD 484 (545)
T ss_pred cCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEEECcc
Confidence 9999999554 3456778999999999877 9999999954
No 22
>KOG0340|consensus
Probab=99.97 E-value=7e-30 Score=244.89 Aligned_cols=259 Identities=16% Similarity=0.148 Sum_probs=188.0
Q ss_pred HHHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhhhh-----------------
Q psy6094 35 KEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITLKR----------------- 96 (455)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~e~----------------- 96 (455)
+.|+...+++-..+-+++-+.--..++|...++.|.+|++.|..|.||||||+++. .+++..
T Consensus 7 ~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrE 86 (442)
T KOG0340|consen 7 KPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRE 86 (442)
T ss_pred CchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHH
Confidence 34666667776666666666666777899999999999999999999999998877 666511
Q ss_pred ------------cCCC--------C--------------------ChHHHHHhc-cCCCCcCcc-----------hHHHH
Q psy6094 97 ------------SETQ--------Q--------------------YPNDVLNML-KDPELEGVN-----------NDVIF 124 (455)
Q Consensus 97 ------------~~~v--------g--------------------~p~~ll~~l-~d~~L~~~~-----------~D~ll 124 (455)
|... | +|+++..++ +++.-.... +|.+|
T Consensus 87 LA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL 166 (442)
T KOG0340|consen 87 LALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVL 166 (442)
T ss_pred HHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhh
Confidence 1111 1 233344444 332111111 77777
Q ss_pred -----HHHHHHHHhcCCCCeEEEEccCCC-----CC-ccceE--Ee-ehh---------hhhhhhccCCCCChHHHHHHH
Q psy6094 125 -----SLLQHICTTQRPGAILVYCTYTFM-----GV-SPMKV--FF-CKN---------VLQRLMKGVGANSPKRWVKLL 181 (455)
Q Consensus 125 -----~~lk~il~~~~~~~k~ilmSAT~~-----g~-~pv~~--~~-l~~---------~~~~~~~~~~~~~~~~l~~~i 181 (455)
..|+.+.+..++..|.++||||+. -. +|+.. .| ++. ..+.|+......++..++..+
T Consensus 167 ~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~L 246 (442)
T KOG0340|consen 167 AGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLL 246 (442)
T ss_pred ccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHH
Confidence 346666655666789999999991 11 33332 12 111 113344444333444455555
Q ss_pred Hc---cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCC
Q psy6094 182 RS---MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITI 258 (455)
Q Consensus 182 ~~---~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI 258 (455)
.. ...+++++|+++..+++.+...|+.. ++.+..|||.|+|++|...+.+|+.+..+|++|||||+||+||
T Consensus 247 r~~~~~~~~simIFvnttr~cQ~l~~~l~~l------e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDI 320 (442)
T KOG0340|consen 247 RDFENKENGSIMIFVNTTRECQLLSMTLKNL------EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDI 320 (442)
T ss_pred hhhhhccCceEEEEeehhHHHHHHHHHHhhh------ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCC
Confidence 44 36899999999999999999999987 4999999999999999999999999999999999999999999
Q ss_pred CCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChhh
Q psy6094 259 DDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPNDV 317 (455)
Q Consensus 259 ~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~~ 317 (455)
|.|..|||..+|+.+ ..|.||.||+.|+|. |.++.++++.+
T Consensus 321 P~V~LVvN~diPr~P------------------~~yiHRvGRtARAGR~G~aiSivt~rD 362 (442)
T KOG0340|consen 321 PTVELVVNHDIPRDP------------------KDYIHRVGRTARAGRKGMAISIVTQRD 362 (442)
T ss_pred CceeEEEecCCCCCH------------------HHHHHhhcchhcccCCcceEEEechhh
Confidence 999999996665443 246799999999998 99999998653
No 23
>KOG0345|consensus
Probab=99.96 E-value=6.8e-30 Score=252.64 Aligned_cols=267 Identities=17% Similarity=0.239 Sum_probs=197.3
Q ss_pred cCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh--------------------------
Q psy6094 42 QSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL-------------------------- 94 (455)
Q Consensus 42 ~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~-------------------------- 94 (455)
+++...+.+..-+.--..++|...++.+.++++|++.++||||||.++- .+++
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa 92 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELA 92 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHH
Confidence 4567777777777777888999999999999999999999999994322 2222
Q ss_pred -------------------------------------hh-cCCCCChHHHHHhc-c-CCCCc--Ccc------hHHHHHH
Q psy6094 95 -------------------------------------KR-SETQQYPNDVLNML-K-DPELE--GVN------NDVIFSL 126 (455)
Q Consensus 95 -------------------------------------e~-~~~vg~p~~ll~~l-~-d~~L~--~~~------~D~ll~~ 126 (455)
+. ..-||+|+||++++ . -..++ +.+ +|.|+++
T Consensus 93 ~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldm 172 (567)
T KOG0345|consen 93 RQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDM 172 (567)
T ss_pred HHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcc
Confidence 11 12355788888877 3 22333 222 8999865
Q ss_pred -----HHHHHHhcCCCCeEEEEccCC---------CCC-ccceEEeehhh-------hh-hhhccCCCCChHHHHHHHHc
Q psy6094 127 -----LQHICTTQRPGAILVYCTYTF---------MGV-SPMKVFFCKNV-------LQ-RLMKGVGANSPKRWVKLLRS 183 (455)
Q Consensus 127 -----lk~il~~~~~~~k~ilmSAT~---------~g~-~pv~~~~l~~~-------~~-~~~~~~~~~~~~~l~~~i~~ 183 (455)
+..|+...++..+.=|||||. .|- .||.+..-..- +. .|+.+....+-..++..+++
T Consensus 173 gFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~ 252 (567)
T KOG0345|consen 173 GFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNN 252 (567)
T ss_pred cHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhc
Confidence 777887788899999999999 344 56553332111 11 12222222223346677777
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeE
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVY 263 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~ 263 (455)
...+.++||+||+..++.....+...- ....++++||.|.+..|.++++.|.+....|++|||||+||||||||++
T Consensus 253 ~~~kK~iVFF~TCasVeYf~~~~~~~l----~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~ 328 (567)
T KOG0345|consen 253 NKDKKCIVFFPTCASVEYFGKLFSRLL----KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDL 328 (567)
T ss_pred cccccEEEEecCcchHHHHHHHHHHHh----CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceE
Confidence 788999999999999999998888652 2588999999999999999999999988999999999999999999999
Q ss_pred EEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC--hhh----hccCCCCcccccC
Q psy6094 264 VVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP--NDV----LNMLKDPELEGVN 330 (455)
Q Consensus 264 VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t--~~~----~~~~~~PEi~r~~ 330 (455)
||. |||+...+ ++.||+||+||.|. |.++.+.. ++. |.-...|++.+..
T Consensus 329 VvQ--------~DpP~~~~----------~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~ 384 (567)
T KOG0345|consen 329 VVQ--------FDPPKDPS----------SFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERID 384 (567)
T ss_pred EEe--------cCCCCChh----------HHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhc
Confidence 998 77766644 45699999999888 88877766 222 3334567776655
No 24
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=1.6e-29 Score=262.03 Aligned_cols=257 Identities=12% Similarity=0.098 Sum_probs=181.6
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc--hh---hhh-----------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH--LD---FIT----------------- 93 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq--lp---~ll----------------- 93 (455)
.|++..+++...+.+...+.....++|.++++.+.++++++++|+||||||.. +| .++
T Consensus 9 ~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~li 88 (423)
T PRK04837 9 KFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALI 88 (423)
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEE
Confidence 46677788888888888888888999999999999999999999999999943 22 111
Q ss_pred --h-------------hh----c------------------------CCCCChHHHHHhc--cCCCCcCcc------hHH
Q psy6094 94 --L-------------KR----S------------------------ETQQYPNDVLNML--KDPELEGVN------NDV 122 (455)
Q Consensus 94 --~-------------e~----~------------------------~~vg~p~~ll~~l--~d~~L~~~~------~D~ 122 (455)
+ .. + .-||+|.+|++.+ ..-.+..++ +|.
T Consensus 89 l~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~ 168 (423)
T PRK04837 89 MAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADR 168 (423)
T ss_pred ECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHH
Confidence 1 00 0 1122455566665 223344444 666
Q ss_pred HHH-----HHHHHHHhcC--CCCeEEEEccCCCCC-c---------cceEEeehhh------hhhhhccCCCCChHHHHH
Q psy6094 123 IFS-----LLQHICTTQR--PGAILVYCTYTFMGV-S---------PMKVFFCKNV------LQRLMKGVGANSPKRWVK 179 (455)
Q Consensus 123 ll~-----~lk~il~~~~--~~~k~ilmSAT~~g~-~---------pv~~~~l~~~------~~~~~~~~~~~~~~~l~~ 179 (455)
++. .++.++...+ ...+.++||||++.. . |......... .+.+.......+...+..
T Consensus 169 l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 248 (423)
T PRK04837 169 MFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQT 248 (423)
T ss_pred HhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHH
Confidence 653 2445553333 245678999999432 1 1111110000 000000001111112444
Q ss_pred HHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCC
Q psy6094 180 LLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITID 259 (455)
Q Consensus 180 ~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~ 259 (455)
.+.....+.+||||+++..++.+++.|...+ +.+..+||++++++|..+++.|++|..+||||||++++|||||
T Consensus 249 ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g------~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip 322 (423)
T PRK04837 249 LIEEEWPDRAIIFANTKHRCEEIWGHLAADG------HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIP 322 (423)
T ss_pred HHHhcCCCeEEEEECCHHHHHHHHHHHHhCC------CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcc
Confidence 4554567889999999999999999998764 7899999999999999999999999999999999999999999
Q ss_pred CeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 260 DIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 260 ~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
+|++||++++ |.|.++|.||+|||||.|. |.|+.|++++
T Consensus 323 ~v~~VI~~d~------------------P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~ 362 (423)
T PRK04837 323 AVTHVFNYDL------------------PDDCEDYVHRIGRTGRAGASGHSISLACEE 362 (423)
T ss_pred ccCEEEEeCC------------------CCchhheEeccccccCCCCCeeEEEEeCHH
Confidence 9999999444 3355677899999999987 9999999954
No 25
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.96 E-value=2.6e-29 Score=262.77 Aligned_cols=256 Identities=14% Similarity=0.146 Sum_probs=182.9
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc--hh---hhhh-----------------
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH--LD---FITL----------------- 94 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq--lp---~ll~----------------- 94 (455)
|++..+++...+.+...+.--.+++|.++++.+.+++++|++|+||||||.. +| .+..
T Consensus 3 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~ 82 (456)
T PRK10590 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILT 82 (456)
T ss_pred HHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEe
Confidence 5677788888888988888899999999999999999999999999999943 33 1110
Q ss_pred ---hh---------------------------------------cCCCCChHHHHHhc--cCCCCcCcc------hHHHH
Q psy6094 95 ---KR---------------------------------------SETQQYPNDVLNML--KDPELEGVN------NDVIF 124 (455)
Q Consensus 95 ---e~---------------------------------------~~~vg~p~~ll~~l--~d~~L~~~~------~D~ll 124 (455)
++ ...|++|.+|++.+ ....+..++ +|.++
T Consensus 83 PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll 162 (456)
T PRK10590 83 PTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRML 162 (456)
T ss_pred CcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHh
Confidence 00 00122455555554 222344444 66655
Q ss_pred H-----HHHHHHHhcCCCCeEEEEccCCCCC----------ccceEEeeh------hhhhhhhccCCCCChHHHHHHHHc
Q psy6094 125 S-----LLQHICTTQRPGAILVYCTYTFMGV----------SPMKVFFCK------NVLQRLMKGVGANSPKRWVKLLRS 183 (455)
Q Consensus 125 ~-----~lk~il~~~~~~~k~ilmSAT~~g~----------~pv~~~~l~------~~~~~~~~~~~~~~~~~l~~~i~~ 183 (455)
. .++.++...+++.|+++||||++.. .|....... .+.+.+.......+...+...+..
T Consensus 163 ~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~ 242 (456)
T PRK10590 163 DMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGK 242 (456)
T ss_pred ccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHHc
Confidence 3 3566665667888999999999431 111111000 000000000001111223344444
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeE
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVY 263 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~ 263 (455)
.....+||||+++.+++.+++.|...+ +.+..+||++++++|.++++.|++|..+|||||+++++|||||+|++
T Consensus 243 ~~~~~~lVF~~t~~~~~~l~~~L~~~g------~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~ 316 (456)
T PRK10590 243 GNWQQVLVFTRTKHGANHLAEQLNKDG------IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPH 316 (456)
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHCC------CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCE
Confidence 556789999999999999999998764 78999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 264 VVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 264 VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
||++++ |.+..+|.||+|||||.+. |.|+.|++.+
T Consensus 317 VI~~~~------------------P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~ 352 (456)
T PRK10590 317 VVNYEL------------------PNVPEDYVHRIGRTGRAAATGEALSLVCVD 352 (456)
T ss_pred EEEeCC------------------CCCHHHhhhhccccccCCCCeeEEEEecHH
Confidence 999554 3455678899999999887 9999999854
No 26
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.96 E-value=2.2e-29 Score=266.85 Aligned_cols=257 Identities=13% Similarity=0.142 Sum_probs=182.4
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCccc--chhhh---hh----------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPL--HLDFI---TL---------------- 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTt--qlp~l---l~---------------- 94 (455)
.|.+..+++...+.+...+..-.+++|.+.++++.+|++++++|+||||||. .+|.+ +.
T Consensus 122 ~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLI 201 (518)
T PLN00206 122 SFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMV 201 (518)
T ss_pred CHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEE
Confidence 5677778999999998888988999999999999999999999999999993 34411 10
Q ss_pred -----h-----------hc----------------------------CCCCChHHHHHhc--cCCCCcCcc------hHH
Q psy6094 95 -----K-----------RS----------------------------ETQQYPNDVLNML--KDPELEGVN------NDV 122 (455)
Q Consensus 95 -----e-----------~~----------------------------~~vg~p~~ll~~l--~d~~L~~~~------~D~ 122 (455)
+ .+ ..|++|.+|++.+ ....+..+. +|.
T Consensus 202 L~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ 281 (518)
T PLN00206 202 LTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDC 281 (518)
T ss_pred EeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHH
Confidence 0 00 0012455566665 333444444 666
Q ss_pred HHH-----HHHHHHHhcCCCCeEEEEccCCCCC-c---------cceEEeeh--h----hhhhhhccCCCCChHHHHHHH
Q psy6094 123 IFS-----LLQHICTTQRPGAILVYCTYTFMGV-S---------PMKVFFCK--N----VLQRLMKGVGANSPKRWVKLL 181 (455)
Q Consensus 123 ll~-----~lk~il~~~~~~~k~ilmSAT~~g~-~---------pv~~~~l~--~----~~~~~~~~~~~~~~~~l~~~i 181 (455)
+++ .+..++ ..-++.|+++||||++.. . ++....-. . +.+.+.......+...+...+
T Consensus 282 ml~~gf~~~i~~i~-~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l 360 (518)
T PLN00206 282 MLERGFRDQVMQIF-QALSQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDIL 360 (518)
T ss_pred HhhcchHHHHHHHH-HhCCCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHH
Confidence 653 244555 334678999999999422 1 11100000 0 000000001111112244444
Q ss_pred Hc--cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCC
Q psy6094 182 RS--MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITID 259 (455)
Q Consensus 182 ~~--~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~ 259 (455)
.. ...+++|||++++..++.+++.|.... .+.+..+||++++++|..+++.|+.|..+|||||+++++|||||
T Consensus 361 ~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~-----g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip 435 (518)
T PLN00206 361 KSKQHFKPPAVVFVSSRLGADLLANAITVVT-----GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLL 435 (518)
T ss_pred HhhcccCCCEEEEcCCchhHHHHHHHHhhcc-----CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcc
Confidence 32 234689999999999999999997642 47899999999999999999999999999999999999999999
Q ss_pred CeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 260 DIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 260 ~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
+|++||++++ |.|..+|.||+|||||.+. |.|+.+++.+
T Consensus 436 ~v~~VI~~d~------------------P~s~~~yihRiGRaGR~g~~G~ai~f~~~~ 475 (518)
T PLN00206 436 RVRQVIIFDM------------------PNTIKEYIHQIGRASRMGEKGTAIVFVNEE 475 (518)
T ss_pred cCCEEEEeCC------------------CCCHHHHHHhccccccCCCCeEEEEEEchh
Confidence 9999999543 4567889999999999986 9999999854
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=3.7e-29 Score=263.00 Aligned_cols=257 Identities=16% Similarity=0.164 Sum_probs=183.8
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc--hhh---hhh----------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH--LDF---ITL---------------- 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq--lp~---ll~---------------- 94 (455)
.|....+++...+.+...+..-.+++|.++++.+.+|+++|++++||||||.. +|. ++.
T Consensus 88 ~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLi 167 (475)
T PRK01297 88 RFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALI 167 (475)
T ss_pred CHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEE
Confidence 46777889999999999999999999999999999999999999999999933 331 110
Q ss_pred ----------------hh----c-------------------------CCCCChHHHHHhc--cCCCCcCcc------hH
Q psy6094 95 ----------------KR----S-------------------------ETQQYPNDVLNML--KDPELEGVN------ND 121 (455)
Q Consensus 95 ----------------e~----~-------------------------~~vg~p~~ll~~l--~d~~L~~~~------~D 121 (455)
+. + ..+++|.+|++.+ ....+.+++ .|
T Consensus 168 l~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah 247 (475)
T PRK01297 168 IAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEAD 247 (475)
T ss_pred EeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHH
Confidence 00 0 0011344455444 233444444 55
Q ss_pred HHHH-----HHHHHHHhc--CCCCeEEEEccCCCCC-c---------cceEEeeh------hhhhhhhccCCCCChHHHH
Q psy6094 122 VIFS-----LLQHICTTQ--RPGAILVYCTYTFMGV-S---------PMKVFFCK------NVLQRLMKGVGANSPKRWV 178 (455)
Q Consensus 122 ~ll~-----~lk~il~~~--~~~~k~ilmSAT~~g~-~---------pv~~~~l~------~~~~~~~~~~~~~~~~~l~ 178 (455)
.+++ .++.++... ..+.|++++|||++.. . |+...... .+.+.+.......+...+.
T Consensus 248 ~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 327 (475)
T PRK01297 248 RMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLY 327 (475)
T ss_pred HHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHHHH
Confidence 5553 255565333 2367999999998432 1 11110000 0000011111111122244
Q ss_pred HHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCC
Q psy6094 179 KLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITI 258 (455)
Q Consensus 179 ~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI 258 (455)
..+.....+.+||||+++.+++.+++.|...+ +.+..+||++++++|.++++.|++|..+||||||++++||||
T Consensus 328 ~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~------~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 328 NLVTQNPWERVMVFANRKDEVRRIEERLVKDG------INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 45554556789999999999999999998764 678999999999999999999999999999999999999999
Q ss_pred CCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 259 DDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 259 ~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
|+|++||++|+ |.|.++|.||+|||||.+. |.++.+++++
T Consensus 402 ~~v~~VI~~~~------------------P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~ 442 (475)
T PRK01297 402 DGISHVINFTL------------------PEDPDDYVHRIGRTGRAGASGVSISFAGED 442 (475)
T ss_pred cCCCEEEEeCC------------------CCCHHHHHHhhCccCCCCCCceEEEEecHH
Confidence 99999999664 4577899999999999887 9999999965
No 28
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.96 E-value=4.7e-29 Score=259.44 Aligned_cols=257 Identities=16% Similarity=0.184 Sum_probs=184.8
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc--hh---hhhh----------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH--LD---FITL---------------- 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq--lp---~ll~---------------- 94 (455)
.|++..+++...+.++..+....+++|.+.++++.++++++++|+||||||.. +| .+++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 36777788999999999999999999999999999999999999999999954 33 1111
Q ss_pred -------------hh----------------------------cCCCCChHHHHHhc-cC-CCCcCcc------hHHHH-
Q psy6094 95 -------------KR----------------------------SETQQYPNDVLNML-KD-PELEGVN------NDVIF- 124 (455)
Q Consensus 95 -------------e~----------------------------~~~vg~p~~ll~~l-~d-~~L~~~~------~D~ll- 124 (455)
.. ...|++|.+|++.+ .. -.+..+. +|.++
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~ 161 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLD 161 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhC
Confidence 00 01122455566665 22 1234444 56555
Q ss_pred ----HHHHHHHHhcCCCCeEEEEccCCCCC-----------ccceEEeehh------hhhhhhccCC-CCChHHHHHHHH
Q psy6094 125 ----SLLQHICTTQRPGAILVYCTYTFMGV-----------SPMKVFFCKN------VLQRLMKGVG-ANSPKRWVKLLR 182 (455)
Q Consensus 125 ----~~lk~il~~~~~~~k~ilmSAT~~g~-----------~pv~~~~l~~------~~~~~~~~~~-~~~~~~l~~~i~ 182 (455)
..+..+....+...|+++||||+++. .|+....... +.+.+..... ..+...+...+.
T Consensus 162 ~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~ 241 (434)
T PRK11192 162 MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLK 241 (434)
T ss_pred CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHh
Confidence 23555554566778999999999532 1221111100 0000000100 111122344444
Q ss_pred ccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCee
Q psy6094 183 SMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIV 262 (455)
Q Consensus 183 ~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~ 262 (455)
....+.+||||+++++++.+++.|...+ +.+..+||++++.+|..+++.|++|..+||||||++++|||||+|+
T Consensus 242 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~------~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 242 QPEVTRSIVFVRTRERVHELAGWLRKAG------INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHHHhCC------CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 3467899999999999999999998753 7899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 263 YVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 263 ~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
+||++++ |.|...|.||+||+||.|. |.|+.+++..
T Consensus 316 ~VI~~d~------------------p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~ 352 (434)
T PRK11192 316 HVINFDM------------------PRSADTYLHRIGRTGRAGRKGTAISLVEAH 352 (434)
T ss_pred EEEEECC------------------CCCHHHHhhcccccccCCCCceEEEEecHH
Confidence 9999554 3466788999999999876 9999999844
No 29
>PTZ00424 helicase 45; Provisional
Probab=99.96 E-value=2.1e-29 Score=259.35 Aligned_cols=263 Identities=11% Similarity=0.141 Sum_probs=185.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh---------------
Q psy6094 31 AAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL--------------- 94 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~--------------- 94 (455)
..+...|.+...++...+.+...+..-.+++|.++++.+.++++++++|+||||||.... .++.
T Consensus 24 ~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~ 103 (401)
T PTZ00424 24 DEIVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILA 103 (401)
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEEC
Confidence 335667888888888888888778888899999999999999999999999999995422 1111
Q ss_pred --------------hhc----------------------------CCCCChHHHHHhc-c-CCCCcCcc------hHHHH
Q psy6094 95 --------------KRS----------------------------ETQQYPNDVLNML-K-DPELEGVN------NDVIF 124 (455)
Q Consensus 95 --------------e~~----------------------------~~vg~p~~ll~~l-~-d~~L~~~~------~D~ll 124 (455)
..+ ..+|+|..+.+.+ . ...+..++ .|.++
T Consensus 104 Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~ 183 (401)
T PTZ00424 104 PTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEML 183 (401)
T ss_pred CCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHH
Confidence 000 0112344455444 2 22344444 45444
Q ss_pred -----HHHHHHHHhcCCCCeEEEEccCCCCC-ccceEEeehhhh---------------hhhhccCC-CCChHHHHHHHH
Q psy6094 125 -----SLLQHICTTQRPGAILVYCTYTFMGV-SPMKVFFCKNVL---------------QRLMKGVG-ANSPKRWVKLLR 182 (455)
Q Consensus 125 -----~~lk~il~~~~~~~k~ilmSAT~~g~-~pv~~~~l~~~~---------------~~~~~~~~-~~~~~~l~~~i~ 182 (455)
..+..++....++.|++++|||++.. ......|+.++. +.+..... ......+...+.
T Consensus 184 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 263 (401)
T PTZ00424 184 SRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYE 263 (401)
T ss_pred hcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHH
Confidence 23455555667889999999999542 111111111000 00000000 001111333343
Q ss_pred ccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCee
Q psy6094 183 SMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIV 262 (455)
Q Consensus 183 ~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~ 262 (455)
......+||||++++.++.+++.|...+ +.+..+||++++++|..+++.|++|+.+|||||+++++|||||+++
T Consensus 264 ~~~~~~~ivF~~t~~~~~~l~~~l~~~~------~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~ 337 (401)
T PTZ00424 264 TLTITQAIIYCNTRRKVDYLTKKMHERD------FTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVS 337 (401)
T ss_pred hcCCCeEEEEecCcHHHHHHHHHHHHCC------CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCC
Confidence 3456789999999999999999998763 7899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChhh
Q psy6094 263 YVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPNDV 317 (455)
Q Consensus 263 ~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~~ 317 (455)
+||+.+. |.|..+|.||+|||||.+. |.||.|++.+.
T Consensus 338 ~VI~~~~------------------p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~ 375 (401)
T PTZ00424 338 LVINYDL------------------PASPENYIHRIGRSGRFGRKGVAINFVTPDD 375 (401)
T ss_pred EEEEECC------------------CCCHHHEeecccccccCCCCceEEEEEcHHH
Confidence 9998553 4577788899999999876 99999999553
No 30
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=6.5e-29 Score=265.38 Aligned_cols=256 Identities=14% Similarity=0.142 Sum_probs=181.7
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc--hh---hhh------------------
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH--LD---FIT------------------ 93 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq--lp---~ll------------------ 93 (455)
|.++.+++.+.+.++.-+..-.+++|.+.|+.+.+++++|++|+||||||.. +| .++
T Consensus 11 f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl 90 (572)
T PRK04537 11 FSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALIL 90 (572)
T ss_pred hhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEE
Confidence 5666788888888888888889999999999999999999999999999943 33 111
Q ss_pred -h-------------hhc----------------------------CCCCChHHHHHhc-cCC--CCcCcc------hHH
Q psy6094 94 -L-------------KRS----------------------------ETQQYPNDVLNML-KDP--ELEGVN------NDV 122 (455)
Q Consensus 94 -~-------------e~~----------------------------~~vg~p~~ll~~l-~d~--~L~~~~------~D~ 122 (455)
+ ..+ ..|++|.+|++.+ ... .+..++ +|.
T Consensus 91 ~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~ 170 (572)
T PRK04537 91 APTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADR 170 (572)
T ss_pred eCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHH
Confidence 0 000 1122455566655 221 233333 565
Q ss_pred HHH-----HHHHHHHhcCC--CCeEEEEccCCCCC-ccceEEeehhh---------------hhhhhccCCCCChHHHHH
Q psy6094 123 IFS-----LLQHICTTQRP--GAILVYCTYTFMGV-SPMKVFFCKNV---------------LQRLMKGVGANSPKRWVK 179 (455)
Q Consensus 123 ll~-----~lk~il~~~~~--~~k~ilmSAT~~g~-~pv~~~~l~~~---------------~~~~~~~~~~~~~~~l~~ 179 (455)
++. .++.++...+. +.|+++||||++.. ......++.++ .+.+.......+...+..
T Consensus 171 lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ 250 (572)
T PRK04537 171 MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLLLG 250 (572)
T ss_pred HhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHHHH
Confidence 553 23444433333 68999999999442 11111111110 000111111111122444
Q ss_pred HHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCC
Q psy6094 180 LLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITID 259 (455)
Q Consensus 180 ~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~ 259 (455)
++....+..+||||+++..++.+++.|...+ +.+..+||++++.+|.++++.|++|..+||||||++++|||||
T Consensus 251 ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g------~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip 324 (572)
T PRK04537 251 LLSRSEGARTMVFVNTKAFVERVARTLERHG------YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID 324 (572)
T ss_pred HHhcccCCcEEEEeCCHHHHHHHHHHHHHcC------CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCcc
Confidence 5554567899999999999999999998764 7899999999999999999999999999999999999999999
Q ss_pred CeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 260 DIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 260 ~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
+|++||++++ |.|..+|.||+||+||.+. |.|+.|++..
T Consensus 325 ~V~~VInyd~------------------P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~ 364 (572)
T PRK04537 325 GVKYVYNYDL------------------PFDAEDYVHRIGRTARLGEEGDAISFACER 364 (572)
T ss_pred CCCEEEEcCC------------------CCCHHHHhhhhcccccCCCCceEEEEecHH
Confidence 9999999543 4566788999999999887 9999999854
No 31
>PRK02362 ski2-like helicase; Provisional
Probab=99.96 E-value=3e-28 Score=268.36 Aligned_cols=345 Identities=13% Similarity=0.082 Sum_probs=217.8
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHH-HHcCCeEEEEcCCCCCcccchh-hhhh--------------------
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDM-VRNNQITVISGETGSGPPLHLD-FITL-------------------- 94 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~-i~~~~~vii~~~TGSGKTtqlp-~ll~-------------------- 94 (455)
|++..+.+...+.+..++.--.|++|.++++. +.+++++++++|||||||...- .++.
T Consensus 3 ~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q 82 (737)
T PRK02362 3 IAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASE 82 (737)
T ss_pred hhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHH
Confidence 44555778888888888888899999999988 8899999999999999995532 2221
Q ss_pred ------hh---cCCCC---------------------ChHHHHHhc--cCCCCcCcc------hHHH---------HHHH
Q psy6094 95 ------KR---SETQQ---------------------YPNDVLNML--KDPELEGVN------NDVI---------FSLL 127 (455)
Q Consensus 95 ------e~---~~~vg---------------------~p~~ll~~l--~d~~L~~~~------~D~l---------l~~l 127 (455)
+. |..++ +|.++...+ ....+..++ .|.+ -.++
T Consensus 83 ~~~~~~~~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il 162 (737)
T PRK02362 83 KFEEFERFEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTL 162 (737)
T ss_pred HHHHHHHhhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHH
Confidence 00 11111 233322222 111222233 2211 1223
Q ss_pred HHHHHhcCCCCeEEEEccCCCC----------C------ccce--E--Eeehhhh--hhhhccCCCCChHHHHHHHHc--
Q psy6094 128 QHICTTQRPGAILVYCTYTFMG----------V------SPMK--V--FFCKNVL--QRLMKGVGANSPKRWVKLLRS-- 183 (455)
Q Consensus 128 k~il~~~~~~~k~ilmSAT~~g----------~------~pv~--~--~~l~~~~--~~~~~~~~~~~~~~l~~~i~~-- 183 (455)
.++. ...++.|+|+||||++. . -|+. . ++-+... ........... ......+..
T Consensus 163 ~rl~-~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 240 (737)
T PRK02362 163 AKLR-RLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSK-DDTLNLVLDTL 240 (737)
T ss_pred HHHH-hcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccc-hHHHHHHHHHH
Confidence 3333 45678999999999832 1 1221 1 1111100 00000000111 111111211
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCC--------------------CCC----------CeEEEeecCCCChhhHhh
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFF--------------------NSS----------RFQIIPLHSMLPTVSQKS 233 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~--------------------~~~----------~~~v~~lhs~l~~~~r~~ 233 (455)
..++++||||+++.+++.+++.|...... ... ..-+..+||+|++.+|..
T Consensus 241 ~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ 320 (737)
T PRK02362 241 EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHREL 320 (737)
T ss_pred HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHH
Confidence 46789999999999999999888754210 000 135788999999999999
Q ss_pred hhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC---CeEE
Q psy6094 234 IFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK---RSET 310 (455)
Q Consensus 234 v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~---G~c~ 310 (455)
+++.|++|..+||+||+++++|||+|++++||+. ...||+..|. .|+|.+++.||+|||||.+. |.|+
T Consensus 321 ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm~GRAGR~g~d~~G~~i 391 (737)
T PRK02362 321 VEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQMAGRAGRPGLDPYGEAV 391 (737)
T ss_pred HHHHHHcCCCeEEEechhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHHHhhcCCCCCCCCCceEE
Confidence 9999999999999999999999999999999974 2357765442 58999999999999999764 9999
Q ss_pred ecCChh-----hhccC--CCCcccccC-------hHHHH---------------HHHh-hhcCCC------ChhhHHhHH
Q psy6094 311 QQYPND-----VLNML--KDPELEGVN-------NDVIF---------------SLLQ-HICTTQ------RPGAILVFL 354 (455)
Q Consensus 311 ~L~t~~-----~~~~~--~~PEi~r~~-------~~~~L---------------~~l~-~~~~~P------~~~~i~~al 354 (455)
-+.... .+..+ ..||-..+. .+.++ .|+. .|...+ -.+.++.++
T Consensus 392 i~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l 471 (737)
T PRK02362 392 LLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVL 471 (737)
T ss_pred EEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHH
Confidence 988631 12211 122222211 11122 1221 122222 134588999
Q ss_pred hhhhhcccccCCCCCCcccCChHHHHHhhCCCChhHHHHH
Q psy6094 355 PGWDTINSLHRSMCQSSFFNSCLLYEFAMVDNKPKEIITV 394 (455)
Q Consensus 355 ~~L~~lgald~~~~l~~~~~T~lG~~l~~lp~~p~~~l~i 394 (455)
+.|.+.|+|+.++.. +.+|++|+.++.++++|..+..+
T Consensus 472 ~~L~~~~~i~~~~~~--~~~t~lG~~~s~~~l~~~t~~~~ 509 (737)
T PRK02362 472 DFLERNGMIEEDGET--LEATELGHLVSRLYIDPLSAAEI 509 (737)
T ss_pred HHHHHCCCeeecCCe--EeEChHHHHHHHhcCCHHHHHHH
Confidence 999999999977642 56799999999999999444433
No 32
>KOG0333|consensus
Probab=99.96 E-value=3e-29 Score=250.65 Aligned_cols=257 Identities=16% Similarity=0.205 Sum_probs=182.9
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh--------------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL-------------------- 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~-------------------- 94 (455)
.|++..+..+..+++..=+..-..++|.+.++....++++|..++||||||.+++ .|+.
T Consensus 246 nwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpya 325 (673)
T KOG0333|consen 246 NWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYA 325 (673)
T ss_pred ChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCcee
Confidence 3555566778888888878877888899999999999999999999999996655 3322
Q ss_pred --------------------------------------hhcC--------CCCChHHHHHhc--cCCCCcCcc------h
Q psy6094 95 --------------------------------------KRSE--------TQQYPNDVLNML--KDPELEGVN------N 120 (455)
Q Consensus 95 --------------------------------------e~~~--------~vg~p~~ll~~l--~d~~L~~~~------~ 120 (455)
+.|. .+++|++|++-| .+-.|.+.. +
T Consensus 326 iilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldea 405 (673)
T KOG0333|consen 326 IILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEA 405 (673)
T ss_pred eeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccch
Confidence 1111 122577777665 333333333 5
Q ss_pred HHHHHH-----HHHHHH-------------------------hcCCCCeEEEEccCCCCC-ccceEEeehhhhhh-----
Q psy6094 121 DVIFSL-----LQHICT-------------------------TQRPGAILVYCTYTFMGV-SPMKVFFCKNVLQR----- 164 (455)
Q Consensus 121 D~ll~~-----lk~il~-------------------------~~~~~~k~ilmSAT~~g~-~pv~~~~l~~~~~~----- 164 (455)
|.++++ +..++. ..+.-.|.+.||||+|-. -.+...|+.++.-.
T Consensus 406 drmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~ 485 (673)
T KOG0333|consen 406 DRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSA 485 (673)
T ss_pred hhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccC
Confidence 555422 111111 112237899999999432 22222222222111
Q ss_pred ----------hhccCCCCChHHHHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhh
Q psy6094 165 ----------LMKGVGANSPKRWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSI 234 (455)
Q Consensus 165 ----------~~~~~~~~~~~~l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v 234 (455)
+.......+...|...+......+|+||++++..++.+++.|.+.+ +.+..|||+-++++|..+
T Consensus 486 gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g------~~~~tlHg~k~qeQRe~a 559 (673)
T KOG0333|consen 486 GKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAG------YKVTTLHGGKSQEQRENA 559 (673)
T ss_pred CCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhcc------ceEEEeeCCccHHHHHHH
Confidence 0001111122236666665667899999999999999999999985 899999999999999999
Q ss_pred hcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecC
Q psy6094 235 FNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQY 313 (455)
Q Consensus 235 ~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~ 313 (455)
++.|++|...|+||||||.||||||||.+|||+.+. -|-..|.||.||+||+|. |.++.+|
T Consensus 560 L~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydma------------------ksieDYtHRIGRTgRAGk~GtaiSfl 621 (673)
T KOG0333|consen 560 LADFREGTGDILVATDVAGRGIDIPNVSLVINYDMA------------------KSIEDYTHRIGRTGRAGKSGTAISFL 621 (673)
T ss_pred HHHHHhcCCCEEEEecccccCCCCCccceeeecchh------------------hhHHHHHHHhccccccccCceeEEEe
Confidence 999999999999999999999999999999994443 234567799999999998 9999999
Q ss_pred Chh
Q psy6094 314 PND 316 (455)
Q Consensus 314 t~~ 316 (455)
|.+
T Consensus 622 t~~ 624 (673)
T KOG0333|consen 622 TPA 624 (673)
T ss_pred ccc
Confidence 954
No 33
>KOG0342|consensus
Probab=99.96 E-value=1.3e-28 Score=245.06 Aligned_cols=260 Identities=14% Similarity=0.136 Sum_probs=194.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchhhhhh----------------
Q psy6094 31 AAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLDFITL---------------- 94 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp~ll~---------------- 94 (455)
......|....+|+...+.++.-+..-+.++|+..++.+..|+++++.|.|||||| ++|+++
T Consensus 78 ~~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKT--lAFLiPaie~l~k~~~~~r~~~ 155 (543)
T KOG0342|consen 78 ITTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKT--LAFLLPAIELLRKLKFKPRNGT 155 (543)
T ss_pred hhhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCce--eeehhHHHHHHHhcccCCCCCe
Confidence 33455677888999999999999999999999999999999999999999999999 444443
Q ss_pred -----------------------hh------cCCCC--------------------ChHHHHHhc-cCCC-CcCc-c---
Q psy6094 95 -----------------------KR------SETQQ--------------------YPNDVLNML-KDPE-LEGV-N--- 119 (455)
Q Consensus 95 -----------------------e~------~~~vg--------------------~p~~ll~~l-~d~~-L~~~-~--- 119 (455)
.. +..+| +|+||+++| ..+. +... .
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lv 235 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLV 235 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeE
Confidence 00 01111 588899999 4332 1111 1
Q ss_pred ---hHHHHHH-----HHHHHHhcCCCCeEEEEccCCCCC-ccc-------eEEeehh-----------hhhhhhccCCCC
Q psy6094 120 ---NDVIFSL-----LQHICTTQRPGAILVYCTYTFMGV-SPM-------KVFFCKN-----------VLQRLMKGVGAN 172 (455)
Q Consensus 120 ---~D~ll~~-----lk~il~~~~~~~k~ilmSAT~~g~-~pv-------~~~~l~~-----------~~~~~~~~~~~~ 172 (455)
+|.+|++ ++.++...+...|..|||||++.. -.+ +..|++- +.+.|+......
T Consensus 236 lDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~ 315 (543)
T KOG0342|consen 236 LDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS 315 (543)
T ss_pred eecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc
Confidence 8999865 777776778899999999999321 000 1112110 112233222222
Q ss_pred ChHHHHHHHHccCC-CCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCC
Q psy6094 173 SPKRWVKLLRSMLV-VPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNI 251 (455)
Q Consensus 173 ~~~~l~~~i~~~~~-g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTni 251 (455)
.-..+..++.+... ..|+|||+|+.-+..+++.|+.. ++.|.-+||+.+|..|..+|..|.+...-|+|||||
T Consensus 316 ~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~------dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDV 389 (543)
T KOG0342|consen 316 RFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI------DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDV 389 (543)
T ss_pred hHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc------CCchhhhhcCCcccccchHHHHHhhcccceEEecch
Confidence 22224455554333 78999999999999999999965 488999999999999999999999999999999999
Q ss_pred CccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 252 AETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 252 ae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
|+||+|||+|+.||. ||++.+ ..+|+||.||+||.|. |..+-+...+
T Consensus 390 aARGlD~P~V~~VvQ--------~~~P~d----------~~~YIHRvGRTaR~gk~G~alL~l~p~ 437 (543)
T KOG0342|consen 390 AARGLDIPDVDWVVQ--------YDPPSD----------PEQYIHRVGRTAREGKEGKALLLLAPW 437 (543)
T ss_pred hhccCCCCCceEEEE--------eCCCCC----------HHHHHHHhccccccCCCceEEEEeChh
Confidence 999999999999998 554443 4678899999999887 9999988844
No 34
>KOG0343|consensus
Probab=99.95 E-value=3.7e-28 Score=243.95 Aligned_cols=257 Identities=15% Similarity=0.185 Sum_probs=204.7
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh--------------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL-------------------- 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~-------------------- 94 (455)
.|.+.-++.+..+-|+.-+..-+..+|.+.|+.-..|++|+..|.||||||.++- .+++
T Consensus 70 kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISP 149 (758)
T KOG0343|consen 70 KFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISP 149 (758)
T ss_pred hHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecc
Confidence 4566677888888888888888899999999999999999999999999994433 3333
Q ss_pred ----------------------------------------hhcCCCCChHHHHHhc-cCCCCcCcc--------hHHHHH
Q psy6094 95 ----------------------------------------KRSETQQYPNDVLNML-KDPELEGVN--------NDVIFS 125 (455)
Q Consensus 95 ----------------------------------------e~~~~vg~p~~ll~~l-~d~~L~~~~--------~D~ll~ 125 (455)
.++.-|++|+|||++| .+|.++.-+ +|.+|+
T Consensus 150 TRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LD 229 (758)
T KOG0343|consen 150 TRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLD 229 (758)
T ss_pred hHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHH
Confidence 1122233799999999 888776655 898886
Q ss_pred H-----HHHHHHhcCCCCeEEEEccCCCC----------CccceEE-e-------ehhhhhhhhccCCCCChHHHHHHHH
Q psy6094 126 L-----LQHICTTQRPGAILVYCTYTFMG----------VSPMKVF-F-------CKNVLQRLMKGVGANSPKRWVKLLR 182 (455)
Q Consensus 126 ~-----lk~il~~~~~~~k~ilmSAT~~g----------~~pv~~~-~-------l~~~~~~~~~~~~~~~~~~l~~~i~ 182 (455)
+ |..++...++..|.+|||||... .-|+-+- + .....+.|+......+.+.|..+|.
T Consensus 230 MGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~ 309 (758)
T KOG0343|consen 230 MGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIK 309 (758)
T ss_pred HhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHH
Confidence 5 77788788999999999999911 1122111 1 0112234444455555556777888
Q ss_pred ccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCee
Q psy6094 183 SMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIV 262 (455)
Q Consensus 183 ~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~ 262 (455)
......+|||+.++.++..+++..+... ++..++.|||.|+|..|..++..|-..+.-|++|||||+||+|.|.|+
T Consensus 310 shlk~K~iVF~SscKqvkf~~e~F~rlr----pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343|consen 310 SHLKKKSIVFLSSCKQVKFLYEAFCRLR----PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred hccccceEEEEehhhHHHHHHHHHHhcC----CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccc
Confidence 7888999999999999999999999864 368999999999999999999999888889999999999999999999
Q ss_pred EEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 263 YVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 263 ~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
+||. || +|...++|+||+||+.|... |.|+.+.+
T Consensus 386 wViQ--------~D----------CPedv~tYIHRvGRtAR~~~~G~sll~L~ 420 (758)
T KOG0343|consen 386 WVIQ--------VD----------CPEDVDTYIHRVGRTARYKERGESLLMLT 420 (758)
T ss_pred eEEE--------ec----------CchhHHHHHHHhhhhhcccCCCceEEEEc
Confidence 9997 54 56667788999999999877 99998888
No 35
>KOG0338|consensus
Probab=99.95 E-value=3.1e-28 Score=242.60 Aligned_cols=267 Identities=13% Similarity=0.159 Sum_probs=206.7
Q ss_pred CcchHHHHHHHHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh----------
Q psy6094 26 DPVLDAAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL---------- 94 (455)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~---------- 94 (455)
..+.+.+....|....+|.-..+.+..-+.--..++|.+.|+.-+-|++++.+|.||||||.++. .+|+
T Consensus 172 g~s~~~~~~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~ 251 (691)
T KOG0338|consen 172 GVSADTQMNESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVA 251 (691)
T ss_pred hhhhhhHHhhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCc
Confidence 44455666778999999998888888888888888999999998999999999999999995544 4443
Q ss_pred ------------------------------hhcCCCC--------------------ChHHHHHhc-cCCC--CcCcc--
Q psy6094 95 ------------------------------KRSETQQ--------------------YPNDVLNML-KDPE--LEGVN-- 119 (455)
Q Consensus 95 ------------------------------e~~~~vg--------------------~p~~ll~~l-~d~~--L~~~~-- 119 (455)
..|--|| +|+|++++| ..|. |+++.
T Consensus 252 ~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVL 331 (691)
T KOG0338|consen 252 ATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVL 331 (691)
T ss_pred ceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEE
Confidence 1111222 688899999 5553 44443
Q ss_pred ----hHHHH-----HHHHHHHHhcCCCCeEEEEccCCC---------CC-ccceEEeehh------hhhhhhccCC---C
Q psy6094 120 ----NDVIF-----SLLQHICTTQRPGAILVYCTYTFM---------GV-SPMKVFFCKN------VLQRLMKGVG---A 171 (455)
Q Consensus 120 ----~D~ll-----~~lk~il~~~~~~~k~ilmSAT~~---------g~-~pv~~~~l~~------~~~~~~~~~~---~ 171 (455)
+|.|| ..++.++...+++.|.+||||||. .- .||.++.-+. ..+.|+..+. .
T Consensus 332 vlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~ 411 (691)
T KOG0338|consen 332 VLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREG 411 (691)
T ss_pred EechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheecccccc
Confidence 88888 347888877789999999999991 12 5666544221 2344554331 1
Q ss_pred CChHHHHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCC
Q psy6094 172 NSPKRWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNI 251 (455)
Q Consensus 172 ~~~~~l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTni 251 (455)
..+..+..+++..-...++||+.++..+.++.=+|--.+ +.+.-|||+|+|++|...++.|+++...|+||||+
T Consensus 412 dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlg------l~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDv 485 (691)
T KOG0338|consen 412 DREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLG------LKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDV 485 (691)
T ss_pred ccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhh------chhhhhcccccHHHHHHHHHHHHhccCCEEEEech
Confidence 223335555555567889999999999999876665554 78889999999999999999999999999999999
Q ss_pred CccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 252 AETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 252 ae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
|+||+||++|..|||+. .|.+...|.||+||+.|.|. |..+.|..+.
T Consensus 486 AsRGLDI~gV~tVINy~------------------mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~ 533 (691)
T KOG0338|consen 486 ASRGLDIEGVQTVINYA------------------MPKTIEHYLHRVGRTARAGRAGRSVTLVGES 533 (691)
T ss_pred hhccCCccceeEEEecc------------------CchhHHHHHHHhhhhhhcccCcceEEEeccc
Confidence 99999999999999944 46677789999999999988 9999999854
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.94 E-value=6e-26 Score=248.65 Aligned_cols=253 Identities=15% Similarity=0.103 Sum_probs=167.1
Q ss_pred cCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCccc--chh---hhhh----------------------
Q psy6094 42 QSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPL--HLD---FITL---------------------- 94 (455)
Q Consensus 42 ~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTt--qlp---~ll~---------------------- 94 (455)
.++...+.++.++....|++|.+.++++.+|++++++++||||||. ++| .++.
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~ 100 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRA 100 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHH
Confidence 5677788888888989999999999999999999999999999993 344 1111
Q ss_pred --hhc---CCCC-----------------------ChHHHHHhc-cC-----CCCcCcc------hHH-----------H
Q psy6094 95 --KRS---ETQQ-----------------------YPNDVLNML-KD-----PELEGVN------NDV-----------I 123 (455)
Q Consensus 95 --e~~---~~vg-----------------------~p~~ll~~l-~d-----~~L~~~~------~D~-----------l 123 (455)
+.+ ..++ +|..|...+ .+ ..+.+++ +|. +
T Consensus 101 l~~l~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~i 180 (742)
T TIGR03817 101 VRELTLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALV 180 (742)
T ss_pred HHHhccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHH
Confidence 111 0110 122121111 00 0122222 232 2
Q ss_pred HHHHHHHHHhcCCCCeEEEEccCCCCC---------ccceEEeehhh-h--hh--hhccC-----C-------CC----C
Q psy6094 124 FSLLQHICTTQRPGAILVYCTYTFMGV---------SPMKVFFCKNV-L--QR--LMKGV-----G-------AN----S 173 (455)
Q Consensus 124 l~~lk~il~~~~~~~k~ilmSAT~~g~---------~pv~~~~l~~~-~--~~--~~~~~-----~-------~~----~ 173 (455)
+..|+++......++|+|++|||++.. .|+...--+.. . .. ++... . .. .
T Consensus 181 l~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~ 260 (742)
T TIGR03817 181 LRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEA 260 (742)
T ss_pred HHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHH
Confidence 233444443445788999999999321 12111000000 0 00 00000 0 00 0
Q ss_pred hHHHHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCC--CCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCC
Q psy6094 174 PKRWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFF--NSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNI 251 (455)
Q Consensus 174 ~~~l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~--~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTni 251 (455)
...+...+ ..+..+||||++++.++.+++.|...... ......+..+||++++++|.++++.|++|+.+||||||+
T Consensus 261 ~~~l~~l~--~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~ 338 (742)
T TIGR03817 261 ADLLADLV--AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNA 338 (742)
T ss_pred HHHHHHHH--HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECch
Confidence 01122223 34689999999999999999988753110 011357889999999999999999999999999999999
Q ss_pred CccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 252 AETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 252 ae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
+|+||||++|++||++|+ |-|.++|.||+|||||.+. |.++.+.+
T Consensus 339 lerGIDI~~vd~VI~~~~------------------P~s~~~y~qRiGRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 339 LELGVDISGLDAVVIAGF------------------PGTRASLWQQAGRAGRRGQGALVVLVAR 384 (742)
T ss_pred HhccCCcccccEEEEeCC------------------CCCHHHHHHhccccCCCCCCcEEEEEeC
Confidence 999999999999999664 4567899999999999887 99998876
No 37
>PRK00254 ski2-like helicase; Provisional
Probab=99.94 E-value=9.4e-26 Score=248.04 Aligned_cols=343 Identities=15% Similarity=0.073 Sum_probs=209.3
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHH-HHcCCeEEEEcCCCCCcccchh-hhhhh-------------------
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDM-VRNNQITVISGETGSGPPLHLD-FITLK------------------- 95 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~-i~~~~~vii~~~TGSGKTtqlp-~ll~e------------------- 95 (455)
|.+...++...+.++.++.--.+++|.++++. +.+++++++++|||||||.... .++..
T Consensus 3 ~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~ 82 (720)
T PRK00254 3 VDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAE 82 (720)
T ss_pred HHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHH
Confidence 44556788899999999999999999999986 8899999999999999995432 22210
Q ss_pred -----------hcCCCC---------------------ChHHHHHhc--cCCCCcCcc------hHHHH-----HHHHHH
Q psy6094 96 -----------RSETQQ---------------------YPNDVLNML--KDPELEGVN------NDVIF-----SLLQHI 130 (455)
Q Consensus 96 -----------~~~~vg---------------------~p~~ll~~l--~d~~L~~~~------~D~ll-----~~lk~i 130 (455)
.|..++ +|..+...+ ....+.+++ .+.+. ..+..+
T Consensus 83 q~~~~~~~~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~i 162 (720)
T PRK00254 83 EKYREFKDWEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMI 162 (720)
T ss_pred HHHHHHHHHhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHH
Confidence 011111 222222221 111222222 11111 223444
Q ss_pred HHhcCCCCeEEEEccCCCC---------------C-ccceE--E-eehhhhhhhhccCCC-C-C---hHHHHHHHHccCC
Q psy6094 131 CTTQRPGAILVYCTYTFMG---------------V-SPMKV--F-FCKNVLQRLMKGVGA-N-S---PKRWVKLLRSMLV 186 (455)
Q Consensus 131 l~~~~~~~k~ilmSAT~~g---------------~-~pv~~--~-~l~~~~~~~~~~~~~-~-~---~~~l~~~i~~~~~ 186 (455)
+.....+.|+|+||||++. . .|+.. . +.... .+...... . . ...+...+ ..+
T Consensus 163 l~~l~~~~qiI~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i--~~~ 238 (720)
T PRK00254 163 LTHMLGRAQILGLSATVGNAEELAEWLNAELVVSDWRPVKLRKGVFYQGF--LFWEDGKIERFPNSWESLVYDAV--KKG 238 (720)
T ss_pred HHhcCcCCcEEEEEccCCCHHHHHHHhCCccccCCCCCCcceeeEecCCe--eeccCcchhcchHHHHHHHHHHH--HhC
Confidence 4455678999999999821 0 12211 0 00000 00000000 0 0 01122233 357
Q ss_pred CCEEEEcCCHHHHHHHHHHHHhcCC-C-------------------CC-------CCeEEEeecCCCChhhHhhhhcCCC
Q psy6094 187 VPILVFLPGWDTINSLHRSMCQSSF-F-------------------NS-------SRFQIIPLHSMLPTVSQKSIFNTPP 239 (455)
Q Consensus 187 g~iLVFlp~~~ei~~l~~~L~~~~~-~-------------------~~-------~~~~v~~lhs~l~~~~r~~v~~~~~ 239 (455)
+++|||++++.+++.++..|..... + .. -...+..+||+|++++|..+++.|+
T Consensus 239 ~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~ 318 (720)
T PRK00254 239 KGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFR 318 (720)
T ss_pred CCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHH
Confidence 8999999999999988877743210 0 00 0124889999999999999999999
Q ss_pred CCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCC---CCeEEecCChh
Q psy6094 240 EGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTL---KRSETQQYPND 316 (455)
Q Consensus 240 ~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~---~G~c~~L~t~~ 316 (455)
+|..+|||||+++++|+|+|++++||.... .|+ ..| ..+.+.+++.||+|||||.+ .|.|+-+.+.+
T Consensus 319 ~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~----~~~-~~~-----~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 319 EGLIKVITATPTLSAGINLPAFRVIIRDTK----RYS-NFG-----WEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred CCCCeEEEeCcHHhhhcCCCceEEEECCce----EcC-CCC-----ceeCCHHHHHHhhhccCCCCcCCCceEEEEecCc
Confidence 999999999999999999999999996442 243 112 23456788999999999964 49999887622
Q ss_pred h----hccC--CCCcccccC---hH----HHH---------------HHHh---hhcCCCC----hhhHHhHHhhhhhcc
Q psy6094 317 V----LNML--KDPELEGVN---ND----VIF---------------SLLQ---HICTTQR----PGAILVFLPGWDTIN 361 (455)
Q Consensus 317 ~----~~~~--~~PEi~r~~---~~----~~L---------------~~l~---~~~~~P~----~~~i~~al~~L~~lg 361 (455)
. +..+ ..||-.... ++ .++ .++. .+...|+ .+.++.++..|.+.|
T Consensus 389 ~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~ 468 (720)
T PRK00254 389 EPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENE 468 (720)
T ss_pred chHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCC
Confidence 1 2222 122221111 11 111 1222 1112244 245678888999999
Q ss_pred cccCCCCCCcccCChHHHHHhhCCCChhHHHHH
Q psy6094 362 SLHRSMCQSSFFNSCLLYEFAMVDNKPKEIITV 394 (455)
Q Consensus 362 ald~~~~l~~~~~T~lG~~l~~lp~~p~~~l~i 394 (455)
.++.+++ ..+.+|++|+.++.++++|+.+..+
T Consensus 469 ~i~~~~~-~~~~~t~lG~~~s~~~i~~~t~~~~ 500 (720)
T PRK00254 469 FIDIDLE-DRFIPLPLGIRTSQLYIDPLTAKKF 500 (720)
T ss_pred CeEEcCC-CCEeeChHHHHHHHHhCCHHHHHHH
Confidence 9876432 1356799999999999999444333
No 38
>KOG0332|consensus
Probab=99.94 E-value=1.7e-26 Score=222.84 Aligned_cols=262 Identities=18% Similarity=0.170 Sum_probs=184.8
Q ss_pred HHHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHc--CCeEEEEcCCCCCcccchh-hhhh-----------------
Q psy6094 35 KEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRN--NQITVISGETGSGPPLHLD-FITL----------------- 94 (455)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~--~~~vii~~~TGSGKTtqlp-~ll~----------------- 94 (455)
+.|++..++|+..+-+-.-+.--...+|+..++.+.. .+++|.++..|||||+++. -+|.
T Consensus 90 ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPt 169 (477)
T KOG0332|consen 90 KSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPT 169 (477)
T ss_pred ccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCch
Confidence 4678888888887766556666677889999999885 4789999999999997765 3332
Q ss_pred ------------hhc-------------------C------CCCChHHHHHhc-c----CCCCcCc----chHHHHHH--
Q psy6094 95 ------------KRS-------------------E------TQQYPNDVLNML-K----DPELEGV----NNDVIFSL-- 126 (455)
Q Consensus 95 ------------e~~-------------------~------~vg~p~~ll~~l-~----d~~L~~~----~~D~ll~~-- 126 (455)
++| . .+|+|+.+++++ . |+....+ .+|.++.-
T Consensus 170 rELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG 249 (477)
T KOG0332|consen 170 RELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQG 249 (477)
T ss_pred HHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhccc
Confidence 111 1 122455555544 1 2211111 16666632
Q ss_pred ----HHHHHHhcCCCCeEEEEccCCCCC----------------ccceEEeehhhhhhhhccCCCCChHH-HHHHHHccC
Q psy6094 127 ----LQHICTTQRPGAILVYCTYTFMGV----------------SPMKVFFCKNVLQRLMKGVGANSPKR-WVKLLRSML 185 (455)
Q Consensus 127 ----lk~il~~~~~~~k~ilmSAT~~g~----------------~pv~~~~l~~~~~~~~~~~~~~~~~~-l~~~i~~~~ 185 (455)
--.+....+++.|+++||||.... ..-+..-++.+.+-|+.+........ +..+..-..
T Consensus 250 ~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~t 329 (477)
T KOG0332|consen 250 FQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLT 329 (477)
T ss_pred ccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhh
Confidence 111222446799999999999111 11112224444455555554433322 222221245
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEE
Q psy6094 186 VVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVV 265 (455)
Q Consensus 186 ~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VI 265 (455)
-|+.+|||.+++.+.+++..|...+ +.|..|||.|..++|..++..|+.|+.||+|+|||.+||||++.|..||
T Consensus 330 igqsiIFc~tk~ta~~l~~~m~~~G------h~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~Vv 403 (477)
T KOG0332|consen 330 IGQSIIFCHTKATAMWLYEEMRAEG------HQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVV 403 (477)
T ss_pred hhheEEEEeehhhHHHHHHHHHhcC------ceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEE
Confidence 7899999999999999999999886 7899999999999999999999999999999999999999999999999
Q ss_pred eCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 266 DCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 266 D~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
|++++-... .-..-+.|.||.||+||.|. |.+|.|..
T Consensus 404 NydlP~~~~------------~~pD~etYlHRiGRtGRFGkkG~a~n~v~ 441 (477)
T KOG0332|consen 404 NYDLPVKYT------------GEPDYETYLHRIGRTGRFGKKGLAINLVD 441 (477)
T ss_pred ecCCccccC------------CCCCHHHHHHHhcccccccccceEEEeec
Confidence 966652211 11455789999999999998 99999987
No 39
>KOG0347|consensus
Probab=99.94 E-value=1.7e-27 Score=239.28 Aligned_cols=259 Identities=16% Similarity=0.151 Sum_probs=181.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcC-CeEEEEcCCCCCcccchh-hhhh----------------
Q psy6094 33 FKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNN-QITVISGETGSGPPLHLD-FITL---------------- 94 (455)
Q Consensus 33 ~~~~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~-~~vii~~~TGSGKTtqlp-~ll~---------------- 94 (455)
=...|.+..+++.....|++-+..-..++|...+++...+ .+++..|+||||||.++. .+++
T Consensus 179 DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 3457888889999999999999988888898888876666 899999999999996644 3332
Q ss_pred -----------------------------------------------------hh-cCCCCChHHHHHhc--cCCCCcCc
Q psy6094 95 -----------------------------------------------------KR-SETQQYPNDVLNML--KDPELEGV 118 (455)
Q Consensus 95 -----------------------------------------------------e~-~~~vg~p~~ll~~l--~d~~L~~~ 118 (455)
.+ ...|.+|+||...+ .+-.|.++
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~ 338 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNF 338 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhh
Confidence 00 01112466666655 33334444
Q ss_pred c---------hHHHH---------HHHHHHH-HhcCCCCeEEEEccCCCCC--ccce--------EEeehhhhhhhhc--
Q psy6094 119 N---------NDVIF---------SLLQHIC-TTQRPGAILVYCTYTFMGV--SPMK--------VFFCKNVLQRLMK-- 167 (455)
Q Consensus 119 ~---------~D~ll---------~~lk~il-~~~~~~~k~ilmSAT~~g~--~pv~--------~~~l~~~~~~~~~-- 167 (455)
. +|.|+ .+|+.+. .......|.++||||+.-. -|+. ..-++..++.++.
T Consensus 339 k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~i 418 (731)
T KOG0347|consen 339 KKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKI 418 (731)
T ss_pred hhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHh
Confidence 4 78887 2344443 1234678999999999110 1110 0001111222111
Q ss_pred ---------------------------cCCCCChHHHHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEE
Q psy6094 168 ---------------------------GVGANSPKRWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQII 220 (455)
Q Consensus 168 ---------------------------~~~~~~~~~l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~ 220 (455)
+....++..+.++|. .-+|..||||++.+.|.+++-.|.... +..+
T Consensus 419 g~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~-ryPGrTlVF~NsId~vKRLt~~L~~L~------i~p~ 491 (731)
T KOG0347|consen 419 GFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLT-RYPGRTLVFCNSIDCVKRLTVLLNNLD------IPPL 491 (731)
T ss_pred CccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEe-ecCCceEEEechHHHHHHHHHHHhhcC------CCCc
Confidence 100000000111111 569999999999999999999998864 7789
Q ss_pred eecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcc
Q psy6094 221 PLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGR 300 (455)
Q Consensus 221 ~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GR 300 (455)
+||+.|.|++|.+.+++|.....-|+||||||+||+|||+|.+||++..++ +-..|.||+||
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPr------------------tseiYVHRSGR 553 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPR------------------TSEIYVHRSGR 553 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCC------------------ccceeEecccc
Confidence 999999999999999999999999999999999999999999999955543 33446699999
Q ss_pred cCCCCC-CeEEecCChh
Q psy6094 301 AGRTLK-RSETQQYPND 316 (455)
Q Consensus 301 aGR~~~-G~c~~L~t~~ 316 (455)
+.|++. |...-|....
T Consensus 554 TARA~~~Gvsvml~~P~ 570 (731)
T KOG0347|consen 554 TARANSEGVSVMLCGPQ 570 (731)
T ss_pred cccccCCCeEEEEeChH
Confidence 999887 9999998844
No 40
>KOG0326|consensus
Probab=99.93 E-value=1.3e-26 Score=219.63 Aligned_cols=259 Identities=12% Similarity=0.138 Sum_probs=188.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh-----------------
Q psy6094 33 FKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL----------------- 94 (455)
Q Consensus 33 ~~~~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~----------------- 94 (455)
--.+|++..+.++...-+-..+.--..++|++.++....|+++++.|..|+|||.+.- .+++
T Consensus 83 kG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPt 162 (459)
T KOG0326|consen 83 KGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPT 162 (459)
T ss_pred cCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeec
Confidence 3346777777766555445556666778899999999999999999999999994422 3333
Q ss_pred ------------hhc----------------------------CCCCChHHHHHhc--cCCCCcCcc------hHHHHH-
Q psy6094 95 ------------KRS----------------------------ETQQYPNDVLNML--KDPELEGVN------NDVIFS- 125 (455)
Q Consensus 95 ------------e~~----------------------------~~vg~p~~ll~~l--~d~~L~~~~------~D~ll~- 125 (455)
+++ ..||+|+|+++.+ .-..++... +|-||+
T Consensus 163 relALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~ 242 (459)
T KOG0326|consen 163 RELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSV 242 (459)
T ss_pred chhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhch
Confidence 111 1133577777766 222344443 777774
Q ss_pred ----HHHHHHHhcCCCCeEEEEccCCCCC----------ccceEEeehhh-----hhhhhccCCCCChHHHHHHHHccCC
Q psy6094 126 ----LLQHICTTQRPGAILVYCTYTFMGV----------SPMKVFFCKNV-----LQRLMKGVGANSPKRWVKLLRSMLV 186 (455)
Q Consensus 126 ----~lk~il~~~~~~~k~ilmSAT~~g~----------~pv~~~~l~~~-----~~~~~~~~~~~~~~~l~~~i~~~~~ 186 (455)
.+.+++...+++.|++++|||+|-. .|..+..+++. .+.|.......+.-.+..++....-
T Consensus 243 ~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqI 322 (459)
T KOG0326|consen 243 DFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQI 322 (459)
T ss_pred hhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHHHHHhcc
Confidence 3666666788999999999999532 22232233221 2222211111111123333333556
Q ss_pred CCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEe
Q psy6094 187 VPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVD 266 (455)
Q Consensus 187 g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID 266 (455)
.+.+|||++...++.+++.+.+.+ +.++.+|+.|.++.|.+||..|++|..+.+||||..-|||||+.|.+|||
T Consensus 323 NQsIIFCNS~~rVELLAkKITelG------yscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN 396 (459)
T KOG0326|consen 323 NQSIIFCNSTNRVELLAKKITELG------YSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN 396 (459)
T ss_pred cceEEEeccchHhHHHHHHHHhcc------chhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe
Confidence 789999999999999999999886 88999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCCh
Q psy6094 267 CGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPN 315 (455)
Q Consensus 267 ~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~ 315 (455)
++++|. -++|.||.||+||.|- |.++.|.+.
T Consensus 397 FDfpk~------------------aEtYLHRIGRsGRFGhlGlAInLity 428 (459)
T KOG0326|consen 397 FDFPKN------------------AETYLHRIGRSGRFGHLGLAINLITY 428 (459)
T ss_pred cCCCCC------------------HHHHHHHccCCccCCCcceEEEEEeh
Confidence 776543 3468899999999998 999999994
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.93 E-value=1.6e-25 Score=241.42 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=105.0
Q ss_pred HHHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccC
Q psy6094 176 RWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETS 255 (455)
Q Consensus 176 ~l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~g 255 (455)
.+..++....++.+||||+++++++.+++.|...+ +.+.++||+|++++|.++++.|..|..+|||||+++++|
T Consensus 226 ~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g------~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~G 299 (607)
T PRK11057 226 QLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRG------ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMG 299 (607)
T ss_pred HHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCC------CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhcc
Confidence 35566665677899999999999999999999864 789999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChhh
Q psy6094 256 ITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPNDV 317 (455)
Q Consensus 256 itI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~~ 317 (455)
||+|+|++||+++. |.|.++|.||+|||||.|. |.|+.+|+..+
T Consensus 300 IDip~V~~VI~~d~------------------P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d 344 (607)
T PRK11057 300 INKPNVRFVVHFDI------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (607)
T ss_pred CCCCCcCEEEEeCC------------------CCCHHHHHHHhhhccCCCCCceEEEEeCHHH
Confidence 99999999999554 3467889999999999886 99999999543
No 42
>KOG0341|consensus
Probab=99.93 E-value=2.8e-26 Score=222.05 Aligned_cols=252 Identities=18% Similarity=0.238 Sum_probs=185.8
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcc--cchh---hhhh----------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPP--LHLD---FITL---------------- 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKT--tqlp---~ll~---------------- 94 (455)
.|.+..+.....+.++..++.-..++|-+-++.+.+|++.|.+|-|||||| +.+| |.|+
T Consensus 171 sF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gL 250 (610)
T KOG0341|consen 171 SFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGL 250 (610)
T ss_pred hhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeE
Confidence 567777888888889999998888899999999999999999999999999 4455 4444
Q ss_pred -------------------------------------------------hhcC--CCCChHHHHHhc--cCCCCcCcc--
Q psy6094 95 -------------------------------------------------KRSE--TQQYPNDVLNML--KDPELEGVN-- 119 (455)
Q Consensus 95 -------------------------------------------------e~~~--~vg~p~~ll~~l--~d~~L~~~~-- 119 (455)
.+|. .|.+|++|.++| .--.|+...
T Consensus 251 iicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL 330 (610)
T KOG0341|consen 251 IICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYL 330 (610)
T ss_pred EEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHh
Confidence 0010 011355555555 111222211
Q ss_pred ----hHHHHHH-----HHHHHHhcCCCCeEEEEccCCCCC----------ccceEEeeh------hhhhh--hhccCCCC
Q psy6094 120 ----NDVIFSL-----LQHICTTQRPGAILVYCTYTFMGV----------SPMKVFFCK------NVLQR--LMKGVGAN 172 (455)
Q Consensus 120 ----~D~ll~~-----lk~il~~~~~~~k~ilmSAT~~g~----------~pv~~~~l~------~~~~~--~~~~~~~~ 172 (455)
+|.|+++ +|.+........|.+|||||+|.. .||.+..-. ++++. |++..
T Consensus 331 ~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqE--- 407 (610)
T KOG0341|consen 331 TLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQE--- 407 (610)
T ss_pred hhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhh---
Confidence 7777754 777776667788999999999543 344332211 11111 11111
Q ss_pred ChHHHHHHHH--ccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCC
Q psy6094 173 SPKRWVKLLR--SMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATN 250 (455)
Q Consensus 173 ~~~~l~~~i~--~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTn 250 (455)
..+++++. +....++|||+..+.+++...+.|--.+ +.++.+||+-.+++|...++.|+.|+..|+||||
T Consensus 408 --aKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKG------VEavaIHGGKDQedR~~ai~afr~gkKDVLVATD 479 (610)
T KOG0341|consen 408 --AKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKG------VEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATD 479 (610)
T ss_pred --hhhhhHHHHhccCCCceEEEeccccChHHHHHHHHHcc------ceeEEeecCcchhHHHHHHHHHhcCCCceEEEec
Confidence 11233322 2567889999999999999999998765 8999999999999999999999999999999999
Q ss_pred CCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 251 IAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 251 iae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
||..|+|.|+|.+|||+++ |-..++|.||.||+||.+. |++-.++...
T Consensus 480 VASKGLDFp~iqHVINyDM------------------P~eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 480 VASKGLDFPDIQHVINYDM------------------PEEIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred chhccCCCccchhhccCCC------------------hHHHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 9999999999999999443 3445678899999999988 9988887643
No 43
>KOG0336|consensus
Probab=99.93 E-value=1.4e-26 Score=225.45 Aligned_cols=251 Identities=16% Similarity=0.237 Sum_probs=177.5
Q ss_pred CHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcc--cchh-hhhh-----hhcCCCC-------------
Q psy6094 43 SRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPP--LHLD-FITL-----KRSETQQ------------- 101 (455)
Q Consensus 43 ~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKT--tqlp-~ll~-----e~~~~vg------------- 101 (455)
-++..+-+.+-+.-...++|.+..+.++.|+++|.+|+||+||| ..+| ++.- .++...|
T Consensus 228 ~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLa 307 (629)
T KOG0336|consen 228 YPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELA 307 (629)
T ss_pred hHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHH
Confidence 34455555555556666779999999999999999999999999 3344 2221 1111111
Q ss_pred ------------------------------------------ChHHHHHhc--cCCCCcCcc------hHHHHHH-----
Q psy6094 102 ------------------------------------------YPNDVLNML--KDPELEGVN------NDVIFSL----- 126 (455)
Q Consensus 102 ------------------------------------------~p~~ll~~l--~d~~L~~~~------~D~ll~~----- 126 (455)
+|++|.+.. .--.|..++ +|.||++
T Consensus 308 lqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpq 387 (629)
T KOG0336|consen 308 LQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQ 387 (629)
T ss_pred HHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHH
Confidence 344444433 112344433 8888865
Q ss_pred HHHHHHhcCCCCeEEEEccCCCCC-ccceEEeehhhhhhhhccC------------CCCChHH---HHH-HHHc-cCCCC
Q psy6094 127 LQHICTTQRPGAILVYCTYTFMGV-SPMKVFFCKNVLQRLMKGV------------GANSPKR---WVK-LLRS-MLVVP 188 (455)
Q Consensus 127 lk~il~~~~~~~k~ilmSAT~~g~-~pv~~~~l~~~~~~~~~~~------------~~~~~~~---l~~-~i~~-~~~g~ 188 (455)
+++++-..|||.|+++.|||.|.. ......|++++...|+..- ....+.. ++. ++.. .+...
T Consensus 388 IrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndK 467 (629)
T KOG0336|consen 388 IRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDK 467 (629)
T ss_pred HHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCce
Confidence 666655889999999999999655 5555566666543322110 0011111 222 2222 56778
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCC
Q psy6094 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCG 268 (455)
Q Consensus 189 iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g 268 (455)
++|||..+.-++.|...+.-. ++..-.|||+-.|.+|+..++.|+.|..+|+||||+|.||+|++||++|+|
T Consensus 468 vIiFv~~K~~AD~LSSd~~l~------gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N-- 539 (629)
T KOG0336|consen 468 VIIFVSRKVMADHLSSDFCLK------GISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN-- 539 (629)
T ss_pred EEEEEechhhhhhccchhhhc------ccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec--
Confidence 999999998888777666544 478889999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChhh
Q psy6094 269 KTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPNDV 317 (455)
Q Consensus 269 ~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~~ 317 (455)
||.+.++ +.|.||.||+||+|. |..+.+++.+.
T Consensus 540 ------yDFP~nI----------eeYVHRvGrtGRaGr~G~sis~lt~~D 573 (629)
T KOG0336|consen 540 ------YDFPRNI----------EEYVHRVGRTGRAGRTGTSISFLTRND 573 (629)
T ss_pred ------cCCCccH----------HHHHHHhcccccCCCCcceEEEEehhh
Confidence 5544443 467799999999998 99999999553
No 44
>KOG0339|consensus
Probab=99.93 E-value=1.4e-26 Score=230.60 Aligned_cols=258 Identities=16% Similarity=0.225 Sum_probs=189.7
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh--hhhh-------------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD--FITL------------------- 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp--~ll~------------------- 94 (455)
.|....++..+......-.....++.|.++++....+++||.+|.||||||-++. .+..
T Consensus 224 sfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilv 303 (731)
T KOG0339|consen 224 SFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILV 303 (731)
T ss_pred hhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEe
Confidence 4455555665565565666677888899999999999999999999999995543 2221
Q ss_pred ----------------------------------h--hcCC------CCChHHHHHhc--cCCCCcCcc------hHHHH
Q psy6094 95 ----------------------------------K--RSET------QQYPNDVLNML--KDPELEGVN------NDVIF 124 (455)
Q Consensus 95 ----------------------------------e--~~~~------vg~p~~ll~~l--~d~~L~~~~------~D~ll 124 (455)
+ .+-+ |.+|+||++++ .--.+.+++ +|.|+
T Consensus 304 PTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmf 383 (731)
T KOG0339|consen 304 PTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMF 383 (731)
T ss_pred ccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhh
Confidence 0 0011 22688899888 555666666 77777
Q ss_pred HH-----HHHHHHhcCCCCeEEEEccCCCCC-c---------cceEEee------hhhhhhhhccCCC-CChHHHHHHHH
Q psy6094 125 SL-----LQHICTTQRPGAILVYCTYTFMGV-S---------PMKVFFC------KNVLQRLMKGVGA-NSPKRWVKLLR 182 (455)
Q Consensus 125 ~~-----lk~il~~~~~~~k~ilmSAT~~g~-~---------pv~~~~l------~~~~~~~~~~~~~-~~~~~l~~~i~ 182 (455)
.+ +|.|....||+.|.++||||++.+ - ||.+.-- +++.+....+... .+-..+.+++.
T Consensus 384 dmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~ 463 (731)
T KOG0339|consen 384 DMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLV 463 (731)
T ss_pred ccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhh
Confidence 44 788887889999999999999332 1 2221111 0111111111111 11112445554
Q ss_pred c-cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCe
Q psy6094 183 S-MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDI 261 (455)
Q Consensus 183 ~-~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V 261 (455)
. ...|.+|+|+.-..+.++++..|...+ +.+..|||++.|.+|.+++..|+.+...|++|||+|++|+||+++
T Consensus 464 ~f~S~gkvlifVTKk~~~e~i~a~Lklk~------~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~i 537 (731)
T KOG0339|consen 464 EFSSEGKVLIFVTKKADAEEIAANLKLKG------FNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSI 537 (731)
T ss_pred hhccCCcEEEEEeccCCHHHHHHHhcccc------ceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcccc
Confidence 4 678999999999999999999998764 899999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChhh
Q psy6094 262 VYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPNDV 317 (455)
Q Consensus 262 ~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~~ 317 (455)
+-||| ||.-..++. +.||.||+||.+. |..|.|.|+++
T Consensus 538 kTVvn--------yD~ardIdt----------hthrigrtgRag~kGvayTlvTeKD 576 (731)
T KOG0339|consen 538 KTVVN--------YDFARDIDT----------HTHRIGRTGRAGEKGVAYTLVTEKD 576 (731)
T ss_pred ceeec--------ccccchhHH----------HHHHhhhcccccccceeeEEechhh
Confidence 99999 554444433 4599999999998 99999999654
No 45
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=2.5e-25 Score=233.55 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=102.1
Q ss_pred HHHHHHc-cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccC
Q psy6094 177 WVKLLRS-MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETS 255 (455)
Q Consensus 177 l~~~i~~-~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~g 255 (455)
+..++.. ..+..+||||+++++++.+++.|+..+ +.+..+||+|++++|..+++.|..|..+|||||+++++|
T Consensus 216 l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g------~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~G 289 (470)
T TIGR00614 216 LLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG------IAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMG 289 (470)
T ss_pred HHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcC------CCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhcc
Confidence 5555543 344566999999999999999998764 789999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChhh
Q psy6094 256 ITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPNDV 317 (455)
Q Consensus 256 itI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~~ 317 (455)
||+|+|++||+++.+ -|.++|.||+|||||.|. |.|+.+|+..+
T Consensus 290 ID~p~V~~VI~~~~P------------------~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d 334 (470)
T TIGR00614 290 INKPDVRFVIHYSLP------------------KSMESYYQESGRAGRDGLPSECHLFYAPAD 334 (470)
T ss_pred CCcccceEEEEeCCC------------------CCHHHHHhhhcCcCCCCCCceEEEEechhH
Confidence 999999999996653 356788999999999886 99999999543
No 46
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.92 E-value=1.2e-24 Score=239.07 Aligned_cols=116 Identities=15% Similarity=0.126 Sum_probs=101.8
Q ss_pred HHHHHHc-cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccC
Q psy6094 177 WVKLLRS-MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETS 255 (455)
Q Consensus 177 l~~~i~~-~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~g 255 (455)
+..++.. ..++..||||.++.+++.+++.|...+ +.+.++||+|++++|..+++.|..|..+|||||+++++|
T Consensus 670 L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~G------ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMG 743 (1195)
T PLN03137 670 IDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFG------HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMG 743 (1195)
T ss_pred HHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCC------CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcC
Confidence 4445543 335689999999999999999999864 789999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 256 ITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 256 itI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
||+|||++||+++++ -|-++|.||+|||||.|. |.|+.+|+..
T Consensus 744 IDkPDVR~VIHydlP------------------kSiEsYyQriGRAGRDG~~g~cILlys~~ 787 (1195)
T PLN03137 744 INKPDVRFVIHHSLP------------------KSIEGYHQECGRAGRDGQRSSCVLYYSYS 787 (1195)
T ss_pred CCccCCcEEEEcCCC------------------CCHHHHHhhhcccCCCCCCceEEEEecHH
Confidence 999999999996654 355678899999999886 9999999943
No 47
>KOG0335|consensus
Probab=99.92 E-value=1.2e-25 Score=226.87 Aligned_cols=241 Identities=15% Similarity=0.260 Sum_probs=168.2
Q ss_pred HHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcc--cchh---hhhhhh----cCCC--C-----------------
Q psy6094 50 LEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPP--LHLD---FITLKR----SETQ--Q----------------- 101 (455)
Q Consensus 50 l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKT--tqlp---~ll~e~----~~~v--g----------------- 101 (455)
++.++..-..++|.-.++.|.+|++++++|+|||||| +.+| +++++. +..- +
T Consensus 89 i~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi 168 (482)
T KOG0335|consen 89 IKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQI 168 (482)
T ss_pred cccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHH
Confidence 4455556666779999999999999999999999999 4455 333311 0000 1
Q ss_pred ----------------------------------------ChHHHHHhc--cCCCCcCcc------hHHHHH-H-----H
Q psy6094 102 ----------------------------------------YPNDVLNML--KDPELEGVN------NDVIFS-L-----L 127 (455)
Q Consensus 102 ----------------------------------------~p~~ll~~l--~d~~L~~~~------~D~ll~-~-----l 127 (455)
+|++|.+.+ ..-.|.... +|.|++ + +
T Consensus 169 ~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~I 248 (482)
T KOG0335|consen 169 YNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQI 248 (482)
T ss_pred HHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccH
Confidence 122233333 222222222 899988 2 7
Q ss_pred HHHHHhcC----CCCeEEEEccCCCCC-ccceEEeehh----------------hhhhhhccCCCCChHHHHHHHHcc--
Q psy6094 128 QHICTTQR----PGAILVYCTYTFMGV-SPMKVFFCKN----------------VLQRLMKGVGANSPKRWVKLLRSM-- 184 (455)
Q Consensus 128 k~il~~~~----~~~k~ilmSAT~~g~-~pv~~~~l~~----------------~~~~~~~~~~~~~~~~l~~~i~~~-- 184 (455)
++++.... ...|.++||||.|-. -...-+|+.+ +.+.........+...|...+...
T Consensus 249 r~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~ 328 (482)
T KOG0335|consen 249 RKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDG 328 (482)
T ss_pred HHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccC
Confidence 77764332 368999999999543 1111112221 001111111122233355555532
Q ss_pred --CCC-----CEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCC
Q psy6094 185 --LVV-----PILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSIT 257 (455)
Q Consensus 185 --~~g-----~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~git 257 (455)
..+ .+|||+.+.+.+..++..|...+ +.+.++||..++.+|.+.++.|+.|+..|+||||||+||+|
T Consensus 329 ~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~------~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlD 402 (482)
T KOG0335|consen 329 PPSDGEPKWEKTLVFVETKRGADELAAFLSSNG------YPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLD 402 (482)
T ss_pred CcccCCcccceEEEEeeccchhhHHHHHHhcCC------CCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCC
Confidence 244 79999999999999999999875 88999999999999999999999999999999999999999
Q ss_pred CCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 258 IDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 258 I~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
||+|++||+ ||-+... ..|.||.||+||.|. |.+..||.
T Consensus 403 i~~V~hVIn--------yDmP~d~----------d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 403 IPNVKHVIN--------YDMPADI----------DDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred CCCCceeEE--------eecCcch----------hhHHHhccccccCCCCceeEEEec
Confidence 999999999 5544333 356799999999998 99999998
No 48
>KOG0348|consensus
Probab=99.92 E-value=2.4e-24 Score=216.11 Aligned_cols=258 Identities=15% Similarity=0.192 Sum_probs=175.1
Q ss_pred HHHHHhcCHHHHHHHHHHcc-CCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchhhhhh--------------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKK-LPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLDFITL-------------------- 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~-lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp~ll~-------------------- 94 (455)
.|....+++...+-++.+.. --...+|.+.|+.|.++++++|.++|||||| ++|+++
T Consensus 137 ~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKT--LAYllPiVq~Lq~m~~ki~Rs~G~~A 214 (708)
T KOG0348|consen 137 AFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKT--LAYLLPIVQSLQAMEPKIQRSDGPYA 214 (708)
T ss_pred cchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCccc--HHHHHHHHHHHHhcCccccccCCceE
Confidence 56788889998888866544 4556778999999999999999999999999 444443
Q ss_pred ---------------------------------------------hhc--CCCCChHHHHHhc-cCCCC--cCcc-----
Q psy6094 95 ---------------------------------------------KRS--ETQQYPNDVLNML-KDPEL--EGVN----- 119 (455)
Q Consensus 95 ---------------------------------------------e~~--~~vg~p~~ll~~l-~d~~L--~~~~----- 119 (455)
..| .-+|+|+||+++| ....+ ....
T Consensus 215 LVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlD 294 (708)
T KOG0348|consen 215 LVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLD 294 (708)
T ss_pred EEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEec
Confidence 112 2355899999998 33322 2222
Q ss_pred -hHHHHHH-----HHHHHHhc-------------CCCCeEEEEccCCC-C------C---ccceEEeehhhh--------
Q psy6094 120 -NDVIFSL-----LQHICTTQ-------------RPGAILVYCTYTFM-G------V---SPMKVFFCKNVL-------- 162 (455)
Q Consensus 120 -~D~ll~~-----lk~il~~~-------------~~~~k~ilmSAT~~-g------~---~pv~~~~l~~~~-------- 162 (455)
+|.||++ +..|+... ++.++-+|+|||+. | . -|+-+- ++...
T Consensus 295 EaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~-ld~s~~~~~p~~~ 373 (708)
T KOG0348|consen 295 EADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYIS-LDKSHSQLNPKDK 373 (708)
T ss_pred chhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeee-ccchhhhcCcchh
Confidence 7888854 33333211 12367789999991 1 0 122111 11100
Q ss_pred ------------------------hhhhccCCCCChHHHHHHHH----ccCCCCEEEEcCCHHHHHHHHHHHHhcCCC--
Q psy6094 163 ------------------------QRLMKGVGANSPKRWVKLLR----SMLVVPILVFLPGWDTINSLHRSMCQSSFF-- 212 (455)
Q Consensus 163 ------------------------~~~~~~~~~~~~~~l~~~i~----~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~-- 212 (455)
+.|......-..-.|...+. ......++||+.+.+.++.-+.++......
T Consensus 374 a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~ 453 (708)
T KOG0348|consen 374 AVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHL 453 (708)
T ss_pred hhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccc
Confidence 01100000000000222222 245568999999999999988777642110
Q ss_pred --------C------CCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccC
Q psy6094 213 --------N------SSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVK 278 (455)
Q Consensus 213 --------~------~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~ 278 (455)
. ..+..++-|||+|+|++|..+|+.|....+-|++|||||+||+|+|+|+.||. ||+
T Consensus 454 e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd~- 524 (708)
T KOG0348|consen 454 EGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ--------YDP- 524 (708)
T ss_pred ccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE--------eCC-
Confidence 0 12567999999999999999999999999999999999999999999999997 774
Q ss_pred CCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 279 DNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 279 ~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
|-|-+.|.||+||+.|.|. |...-+..
T Consensus 525 ---------P~s~adylHRvGRTARaG~kG~alLfL~ 552 (708)
T KOG0348|consen 525 ---------PFSTADYLHRVGRTARAGEKGEALLFLL 552 (708)
T ss_pred ---------CCCHHHHHHHhhhhhhccCCCceEEEec
Confidence 5677899999999999988 87766655
No 49
>KOG0334|consensus
Probab=99.91 E-value=5.7e-25 Score=236.21 Aligned_cols=256 Identities=18% Similarity=0.278 Sum_probs=190.9
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc--hh-hhhh------------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH--LD-FITL------------------ 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq--lp-~ll~------------------ 94 (455)
.|.++..++.....+++-+.-+..++|.+.+++|..|++||.+|.||||||.. +| +.+.
T Consensus 366 sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~a 445 (997)
T KOG0334|consen 366 SWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILA 445 (997)
T ss_pred hHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEc
Confidence 67888899999998888888899999999999999999999999999999933 34 2111
Q ss_pred ----------------------------------------hhcCC--CCChHHHHHhc--cCCCCcCcc---------hH
Q psy6094 95 ----------------------------------------KRSET--QQYPNDVLNML--KDPELEGVN---------ND 121 (455)
Q Consensus 95 ----------------------------------------e~~~~--vg~p~~ll~~l--~d~~L~~~~---------~D 121 (455)
.+|.. |++|++.++.+ +...+.+.. +|
T Consensus 446 Ptrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaD 525 (997)
T KOG0334|consen 446 PTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEAD 525 (997)
T ss_pred CCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhh
Confidence 11211 11455555555 222222222 78
Q ss_pred HHHHH-----HHHHHHhcCCCCeEEEEccCCCC---------C-ccceEEee------hhhhhhhhccC-CCCChHHHHH
Q psy6094 122 VIFSL-----LQHICTTQRPGAILVYCTYTFMG---------V-SPMKVFFC------KNVLQRLMKGV-GANSPKRWVK 179 (455)
Q Consensus 122 ~ll~~-----lk~il~~~~~~~k~ilmSAT~~g---------~-~pv~~~~l------~~~~~~~~~~~-~~~~~~~l~~ 179 (455)
.|+.+ +-.|+++.+++.|++++|||+|- . .||.+.+. +++.+.+..+. .+.+...|..
T Consensus 526 rmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~e 605 (997)
T KOG0334|consen 526 RMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLE 605 (997)
T ss_pred hhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHH
Confidence 87743 22267688999999999999931 1 45554332 22222222222 1222222444
Q ss_pred HHHc-cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCC
Q psy6094 180 LLRS-MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITI 258 (455)
Q Consensus 180 ~i~~-~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI 258 (455)
+|.. ...++++||+..+..++.|.+.|.+.+ +.+..|||+.++.+|..+++.|+.|..+++|||+++++|+++
T Consensus 606 Ll~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag------~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv 679 (997)
T KOG0334|consen 606 LLGERYEDGKTIIFVDKQEKADALLRDLQKAG------YNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDV 679 (997)
T ss_pred HHHHHhhcCCEEEEEcCchHHHHHHHHHHhcC------cchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhccccc
Confidence 4443 568999999999999999999999765 778889999999999999999999999999999999999999
Q ss_pred CCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCCh
Q psy6094 259 DDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPN 315 (455)
Q Consensus 259 ~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~ 315 (455)
.++..||| ||.+++... |.||.||+||+++ |.||.+.++
T Consensus 680 ~~l~Lvvn--------yd~pnh~ed----------yvhR~gRTgragrkg~AvtFi~p 719 (997)
T KOG0334|consen 680 KELILVVN--------YDFPNHYED----------YVHRVGRTGRAGRKGAAVTFITP 719 (997)
T ss_pred ccceEEEE--------cccchhHHH----------HHHHhcccccCCccceeEEEeCh
Confidence 99999999 666666443 7799999999999 999999995
No 50
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.91 E-value=1.8e-23 Score=225.47 Aligned_cols=118 Identities=15% Similarity=0.129 Sum_probs=103.7
Q ss_pred HHHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccC
Q psy6094 176 RWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETS 255 (455)
Q Consensus 176 ~l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~g 255 (455)
.+..++....+++.||||+++.+++.+++.|...+ +.+.++||+|+.++|..+++.|..|..+|||||+++++|
T Consensus 214 ~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g------~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~G 287 (591)
T TIGR01389 214 FLLDYLKKHRGQSGIIYASSRKKVEELAERLESQG------ISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMG 287 (591)
T ss_pred HHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCC------CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhcc
Confidence 46666665567889999999999999999998764 778999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChhh
Q psy6094 256 ITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPNDV 317 (455)
Q Consensus 256 itI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~~ 317 (455)
||+|+|++||+++. |-|.++|.||+|||||.|. |.|+.+|+..+
T Consensus 288 ID~p~v~~VI~~~~------------------p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d 332 (591)
T TIGR01389 288 IDKPNVRFVIHYDM------------------PGNLESYYQEAGRAGRDGLPAEAILLYSPAD 332 (591)
T ss_pred CcCCCCCEEEEcCC------------------CCCHHHHhhhhccccCCCCCceEEEecCHHH
Confidence 99999999999554 3456778899999999885 99999999543
No 51
>KOG0327|consensus
Probab=99.90 E-value=6.4e-24 Score=206.54 Aligned_cols=267 Identities=16% Similarity=0.266 Sum_probs=190.1
Q ss_pred ccchhhhccccCCcchHHHHHHHHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hh
Q psy6094 14 VTSWETRQKLLNDPVLDAAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FI 92 (455)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~l 92 (455)
...+++++....++++++.|++++.+....-.+ .-|...+|.+|++.| .|.++++++++|||||..+- .+
T Consensus 14 ~~~iesn~~evvdsfddm~L~e~LLrgiy~yGF--------ekPSaIQqraI~p~i-~G~dv~~qaqsgTgKt~af~i~i 84 (397)
T KOG0327|consen 14 EGVIESNWNEVVDSFDDMNLKESLLRGIYAYGF--------EKPSAIQQRAILPCI-KGHDVIAQAQSGTGKTAAFLISI 84 (397)
T ss_pred cccccccHHHHhhhhhhcCCCHHHHhHHHhhcc--------CCchHHHhccccccc-cCCceeEeeeccccchhhhHHHH
Confidence 457788888888888888888887776644333 345555566666555 56679999999999994433 22
Q ss_pred hh--------------------------------------------------------h--hcCCCCChHHHHHhc-cCC
Q psy6094 93 TL--------------------------------------------------------K--RSETQQYPNDVLNML-KDP 113 (455)
Q Consensus 93 l~--------------------------------------------------------e--~~~~vg~p~~ll~~l-~d~ 113 (455)
+. . ....+|+|+++++++ ..
T Consensus 85 Lq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~- 163 (397)
T KOG0327|consen 85 LQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG- 163 (397)
T ss_pred HhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-
Confidence 21 0 011234577777777 22
Q ss_pred CCcC--cc------hHHHH-----HHHHHHHHhcCCCCeEEEEccCCCCC----------ccceEEee------hhhhhh
Q psy6094 114 ELEG--VN------NDVIF-----SLLQHICTTQRPGAILVYCTYTFMGV----------SPMKVFFC------KNVLQR 164 (455)
Q Consensus 114 ~L~~--~~------~D~ll-----~~lk~il~~~~~~~k~ilmSAT~~g~----------~pv~~~~l------~~~~~~ 164 (455)
.|.. .. +|.+| +.+..+....+++.|++++|||+|-. +|+.+..- +.+.+.
T Consensus 164 ~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~ 243 (397)
T KOG0327|consen 164 SLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQF 243 (397)
T ss_pred cccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeee
Confidence 2222 22 67777 44777777889999999999999432 33332221 111122
Q ss_pred hhccCCCCChHHHHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceE
Q psy6094 165 LMKGVGANSPKRWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRK 244 (455)
Q Consensus 165 ~~~~~~~~~~~~l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~k 244 (455)
|.......+-..+..... .-.+.+|||+|++.+..+...|..++ +.+..+||.+.+.+|..++..|+.|..+
T Consensus 244 ~i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~------~~~s~~~~d~~q~~R~~~~~ef~~gssr 315 (397)
T KOG0327|consen 244 YINVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHG------FTVSAIHGDMEQNERDTLMREFRSGSSR 315 (397)
T ss_pred eeeccccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCC------ceEEEeecccchhhhhHHHHHhhcCCce
Confidence 222222222222333332 67789999999999999999997664 8999999999999999999999999999
Q ss_pred EEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 245 IVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 245 VivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
|+|+|+.+++|+||-++..||| ||. |.-+++|.||+||+||.|. |....+.++.
T Consensus 316 vlIttdl~argidv~~~slvin--------ydl----------P~~~~~yihR~gr~gr~grkg~~in~v~~~ 370 (397)
T KOG0327|consen 316 VLITTDLLARGIDVQQVSLVVN--------YDL----------PARKENYIHRIGRAGRFGRKGVAINFVTEE 370 (397)
T ss_pred EEeeccccccccchhhcceeee--------ecc----------ccchhhhhhhcccccccCCCceeeeeehHh
Confidence 9999999999999999999999 553 3456788899999999887 9999999954
No 52
>KOG0346|consensus
Probab=99.90 E-value=3.1e-23 Score=203.99 Aligned_cols=260 Identities=16% Similarity=0.145 Sum_probs=191.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcc--cchh---hhhh-----------
Q psy6094 31 AAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPP--LHLD---FITL----------- 94 (455)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKT--tqlp---~ll~----------- 94 (455)
++-.+.|++..+.++..+.+.+-+.--...+|...|+.+.+|++++..|.|||||| +.+| -|+.
T Consensus 15 e~~~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~ 94 (569)
T KOG0346|consen 15 ESKEKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGP 94 (569)
T ss_pred hhhhccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccc
Confidence 33447899999999999999999999999999999999999999999999999999 3344 2222
Q ss_pred -------------------------------------------------h-hcCCCCChHHHHHhc-cCC--CCcCcc--
Q psy6094 95 -------------------------------------------------K-RSETQQYPNDVLNML-KDP--ELEGVN-- 119 (455)
Q Consensus 95 -------------------------------------------------e-~~~~vg~p~~ll~~l-~d~--~L~~~~-- 119 (455)
+ -...||+|.++++++ ..+ .+...+
T Consensus 95 sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~L 174 (569)
T KOG0346|consen 95 SAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFL 174 (569)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeE
Confidence 0 011233455577776 332 333333
Q ss_pred ----hHHHHHH-----HHHHHHhcCCCCeEEEEccCCCC----------CccceEEeehh-------hhhhhhccCCCCC
Q psy6094 120 ----NDVIFSL-----LQHICTTQRPGAILVYCTYTFMG----------VSPMKVFFCKN-------VLQRLMKGVGANS 173 (455)
Q Consensus 120 ----~D~ll~~-----lk~il~~~~~~~k~ilmSAT~~g----------~~pv~~~~l~~-------~~~~~~~~~~~~~ 173 (455)
+|++|.+ ++.+....++..|-++||||+.. +.||...+-++ ..+.++.+...++
T Consensus 175 VvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DK 254 (569)
T KOG0346|consen 175 VVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDK 254 (569)
T ss_pred EechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchh
Confidence 8999854 78887788899999999999911 13443222211 1112223332111
Q ss_pred hHHHHHHHHc--cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCC
Q psy6094 174 PKRWVKLLRS--MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNI 251 (455)
Q Consensus 174 ~~~l~~~i~~--~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTni 251 (455)
-. +...+-+ --.|.+|+|+++.+.+-++.-.|+..+ +..+.|.|.||..-|..+++.|..|...||+|||.
T Consensus 255 fl-llyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFG------iksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~ 327 (569)
T KOG0346|consen 255 FL-LLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFG------IKSCILNSELPANSRCHIIEQFNKGLYDIVIATDD 327 (569)
T ss_pred HH-HHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhC------cHhhhhcccccccchhhHHHHhhCcceeEEEEccC
Confidence 11 2221111 457999999999999999999998875 77888999999999999999999999999999992
Q ss_pred C-----------------------------------ccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHh
Q psy6094 252 A-----------------------------------ETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQ 296 (455)
Q Consensus 252 a-----------------------------------e~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~Q 296 (455)
- .||||..+|..|||+++| -+..+|+|
T Consensus 328 s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P------------------~t~~sYIH 389 (569)
T KOG0346|consen 328 SADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFP------------------ETVTSYIH 389 (569)
T ss_pred ccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCC------------------CchHHHHH
Confidence 1 289999999999996653 44557889
Q ss_pred hhcccCCCCC-CeEEecCCh
Q psy6094 297 RRGRAGRTLK-RSETQQYPN 315 (455)
Q Consensus 297 R~GRaGR~~~-G~c~~L~t~ 315 (455)
|+||+||.+. |.+..+...
T Consensus 390 RvGRTaRg~n~GtalSfv~P 409 (569)
T KOG0346|consen 390 RVGRTARGNNKGTALSFVSP 409 (569)
T ss_pred hccccccCCCCCceEEEecc
Confidence 9999999877 999988883
No 53
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.90 E-value=3.5e-22 Score=223.01 Aligned_cols=113 Identities=22% Similarity=0.113 Sum_probs=94.2
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeE
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVY 263 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~ 263 (455)
...+++||||+++..++.++..|............+..+||+|++++|..+++.|++|..+|||||+++|+|||||+|++
T Consensus 282 ~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~ 361 (876)
T PRK13767 282 KEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDL 361 (876)
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcE
Confidence 34678999999999999999999874210011356899999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCC----CCeEEecCC
Q psy6094 264 VVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTL----KRSETQQYP 314 (455)
Q Consensus 264 VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~----~G~c~~L~t 314 (455)
||+.|. |.|.+++.||+|||||.. .|.+|.+..
T Consensus 362 VI~~~~------------------P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 362 VVLLGS------------------PKSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred EEEeCC------------------CCCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 998553 456788999999999852 377776544
No 54
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.89 E-value=2.4e-22 Score=222.98 Aligned_cols=112 Identities=20% Similarity=0.233 Sum_probs=96.6
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeE
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVY 263 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~ 263 (455)
..+|+++||+|+.++++.+++.|++.. +++.+..+||+|++++|.++++.|++|+.+|+|||+++|+|||||++++
T Consensus 658 ~~g~qv~if~n~i~~~e~l~~~L~~~~----p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~ 733 (926)
T TIGR00580 658 LRGGQVFYVHNRIESIEKLATQLRELV----PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANT 733 (926)
T ss_pred HcCCeEEEEECCcHHHHHHHHHHHHhC----CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCE
Confidence 457899999999999999999998752 2478999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 264 VVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 264 VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
||. ||... -+-+++.||+||+||.+. |.||.+++..
T Consensus 734 VIi--------~~a~~---------~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 734 III--------ERADK---------FGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred EEE--------ecCCC---------CCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 997 33221 122467799999999886 9999999743
No 55
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.87 E-value=1.2e-21 Score=221.68 Aligned_cols=111 Identities=17% Similarity=0.174 Sum_probs=94.0
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeE
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVY 263 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~ 263 (455)
..+|.++||+|+.+.++.+++.|.+.. +++.+..+||+|++++|.+++..|++|+.+|+|||+++|+|||||+|++
T Consensus 807 ~r~gqv~vf~n~i~~ie~la~~L~~~~----p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~ 882 (1147)
T PRK10689 807 LRGGQVYYLYNDVENIQKAAERLAELV----PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882 (1147)
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHHhC----CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCE
Confidence 347899999999999999999998763 2467889999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCCh
Q psy6094 264 VVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPN 315 (455)
Q Consensus 264 VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~ 315 (455)
||- +++.. -+-+++.||+||+||.+. |.||-+++.
T Consensus 883 VIi--------~~ad~---------fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 883 III--------ERADH---------FGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred EEE--------ecCCC---------CCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 993 11100 012458899999999887 999998863
No 56
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.87 E-value=2.5e-21 Score=211.24 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=90.9
Q ss_pred cCCCCEEEEcCCH--------HHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccC
Q psy6094 184 MLVVPILVFLPGW--------DTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETS 255 (455)
Q Consensus 184 ~~~g~iLVFlp~~--------~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~g 255 (455)
..+++++||||.. ..++.+++.|.... +.+.+..+||+|++++|.++++.|++|+.+|+|||+++|+|
T Consensus 469 ~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~----~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 544 (681)
T PRK10917 469 AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAF----PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVG 544 (681)
T ss_pred HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHC----CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeC
Confidence 4577999999954 44566777777642 13789999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 256 ITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 256 itI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
||||++++||+.+.++ .| -+++.||+||+||.+. |.||.+++
T Consensus 545 iDip~v~~VIi~~~~r-------~g----------ls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 545 VDVPNATVMVIENAER-------FG----------LAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred cccCCCcEEEEeCCCC-------CC----------HHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999843321 12 3567899999999875 99999986
No 57
>KOG0344|consensus
Probab=99.87 E-value=1.1e-21 Score=199.83 Aligned_cols=256 Identities=17% Similarity=0.202 Sum_probs=175.4
Q ss_pred HhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc--hhhhhh---hh---cCCCC----------
Q psy6094 40 KLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH--LDFITL---KR---SETQQ---------- 101 (455)
Q Consensus 40 ~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq--lp~ll~---e~---~~~vg---------- 101 (455)
...+++..+-+...+.--....|.+.++.+.++++++.+|+||||||.. +| ++. .. -..+|
T Consensus 141 ~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~P-il~~L~~~~~~~~~~gl~a~Il~ptr 219 (593)
T KOG0344|consen 141 YSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLP-ILQHLKDLSQEKHKVGLRALILSPTR 219 (593)
T ss_pred hhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhH-HHHHHHHhhcccCccceEEEEecchH
Confidence 4445555555555566555566889999999999999999999999933 33 222 00 00111
Q ss_pred -------------------------------------------------ChHHHHHhc-cCC---CCcCcc------hHH
Q psy6094 102 -------------------------------------------------YPNDVLNML-KDP---ELEGVN------NDV 122 (455)
Q Consensus 102 -------------------------------------------------~p~~ll~~l-~d~---~L~~~~------~D~ 122 (455)
+|.++...+ ..+ .+.++. +|.
T Consensus 220 eLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~ 299 (593)
T KOG0344|consen 220 ELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADL 299 (593)
T ss_pred HHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHh
Confidence 233455555 222 333333 676
Q ss_pred HHHH------HHHHHH-hcCCCCeEEEEccCCCC---------C-ccceEEee------hhhhhhhhccCCC-CChHHHH
Q psy6094 123 IFSL------LQHICT-TQRPGAILVYCTYTFMG---------V-SPMKVFFC------KNVLQRLMKGVGA-NSPKRWV 178 (455)
Q Consensus 123 ll~~------lk~il~-~~~~~~k~ilmSAT~~g---------~-~pv~~~~l------~~~~~~~~~~~~~-~~~~~l~ 178 (455)
|+.- +-+++. ...++.++=+||||++- . .++.+.+- +.+.+.++.+... .+.-.+.
T Consensus 300 lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~r 379 (593)
T KOG0344|consen 300 LFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALR 379 (593)
T ss_pred hhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHH
Confidence 6633 333332 23488899999999921 1 22222221 1111222212111 1111244
Q ss_pred HHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCC
Q psy6094 179 KLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITI 258 (455)
Q Consensus 179 ~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI 258 (455)
..+...-..++|||+-+.+.+..|...|... ++..+-.+||..++.+|..++++|+.|+..|++|||+.+||+|+
T Consensus 380 q~v~~g~~PP~lIfVQs~eRak~L~~~L~~~-----~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf 454 (593)
T KOG0344|consen 380 QLVASGFKPPVLIFVQSKERAKQLFEELEIY-----DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDF 454 (593)
T ss_pred HHHhccCCCCeEEEEecHHHHHHHHHHhhhc-----cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccc
Confidence 5555567789999999999999999988532 25789999999999999999999999999999999999999999
Q ss_pred CCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChhhhc
Q psy6094 259 DDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPNDVLN 319 (455)
Q Consensus 259 ~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~~~~ 319 (455)
.||..||| || .|-|.-+|.||.||+||.++ |.+|.+||.+.++
T Consensus 455 ~gvn~VIn--------yD----------~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~ 498 (593)
T KOG0344|consen 455 KGVNLVIN--------YD----------FPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMP 498 (593)
T ss_pred cCcceEEe--------cC----------CCchhHHHHHHhhccCCCCCCcceEEEeccccch
Confidence 99999999 55 35667789999999999998 9999999986654
No 58
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.86 E-value=2.3e-21 Score=210.15 Aligned_cols=94 Identities=21% Similarity=0.194 Sum_probs=79.2
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHh-----hhhcCCCC----Cc-------eEEEE
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQK-----SIFNTPPE----GV-------RKIVL 247 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~-----~v~~~~~~----g~-------~kViv 247 (455)
..++++||||+|+++++.+++.|.+.+ + ..|||+|++.+|. ++++.|++ |. .+|+|
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g------~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILV 341 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEK------F--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLV 341 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcC------C--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEe
Confidence 567899999999999999999998753 3 8899999999999 77887876 43 68999
Q ss_pred eCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC
Q psy6094 248 ATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK 306 (455)
Q Consensus 248 aTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~ 306 (455)
||+++|+||||+. ++||+ ++ ...++|.||+||+||.+.
T Consensus 342 ATdVaerGLDId~-d~VI~--------d~------------aP~esyIQRiGRtgR~G~ 379 (844)
T TIGR02621 342 CTSAGEVGVNISA-DHLVC--------DL------------APFESMQQRFGRVNRFGE 379 (844)
T ss_pred ccchhhhcccCCc-ceEEE--------CC------------CCHHHHHHHhcccCCCCC
Confidence 9999999999987 77775 21 123789999999999876
No 59
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.86 E-value=4.5e-21 Score=207.78 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=90.9
Q ss_pred cCCCCEEEEcCCH--------HHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccC
Q psy6094 184 MLVVPILVFLPGW--------DTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETS 255 (455)
Q Consensus 184 ~~~g~iLVFlp~~--------~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~g 255 (455)
..++.++||||.. ..++.+++.|.... +++.+..+||+|++++|..+++.|++|+.+|||||+++|+|
T Consensus 446 ~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~----~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 521 (630)
T TIGR00643 446 AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF----PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVG 521 (630)
T ss_pred HhCCcEEEEEccccccccchHHHHHHHHHHHHhhC----CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecC
Confidence 4577899999975 44566777776532 25789999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 256 ITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 256 itI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
||+|++++||..+. +. -+-+++.||+||+||.+. |.||.++.
T Consensus 522 vDiP~v~~VIi~~~--------~r---------~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 522 VDVPNATVMVIEDA--------ER---------FGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred cccCCCcEEEEeCC--------Cc---------CCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999999997433 21 123578899999999875 99999984
No 60
>KOG0350|consensus
Probab=99.86 E-value=2.6e-21 Score=193.12 Aligned_cols=120 Identities=16% Similarity=0.214 Sum_probs=102.2
Q ss_pred HHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCC
Q psy6094 177 WVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSI 256 (455)
Q Consensus 177 l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gi 256 (455)
+...|.......+|+|.++.+.+.+++..|+-.. ...++.+-.+.|++..+.|.+.++.|..|...|+||||+.+|||
T Consensus 420 ~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~--~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGi 497 (620)
T KOG0350|consen 420 VYALITSNKLNRTLCFVNSVSSANRLAHVLKVEF--CSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGI 497 (620)
T ss_pred HHHHHHHhhcceEEEEecchHHHHHHHHHHHHHh--ccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCC
Confidence 4445555677889999999999999999998321 13456677789999999999999999999999999999999999
Q ss_pred CCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 257 TIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 257 tI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
|+.||+.||| ||++ .|--+|.||+||+||+|. |.||.|.+..
T Consensus 498 Dv~~v~~VIN--------Yd~P----------~~~ktyVHR~GRTARAgq~G~a~tll~~~ 540 (620)
T KOG0350|consen 498 DVNDVDNVIN--------YDPP----------ASDKTYVHRAGRTARAGQDGYAITLLDKH 540 (620)
T ss_pred cccccceEee--------cCCC----------chhhHHHHhhcccccccCCceEEEeeccc
Confidence 9999999999 7754 455567799999999998 9999999843
No 61
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.84 E-value=3.2e-20 Score=188.37 Aligned_cols=108 Identities=15% Similarity=0.124 Sum_probs=89.1
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhh----hhcCCCCCceEEEEeCCCCccCCCCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKS----IFNTPPEGVRKIVLATNIAETSITID 259 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~----v~~~~~~g~~kVivaTniae~gitI~ 259 (455)
..++++||||++.++++.+++.|.+... ...+..+||++++.+|.+ +++.|++|..+|||||+++|+|+||+
T Consensus 220 ~~~~~~lVf~~t~~~~~~~~~~L~~~~~----~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~ 295 (358)
T TIGR01587 220 KKGGKIAIIVNTVDRAQEFYQQLKENAP----EEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS 295 (358)
T ss_pred hCCCeEEEEECCHHHHHHHHHHHHhhcC----CCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC
Confidence 4578999999999999999999987642 357999999999999976 48889999999999999999999996
Q ss_pred CeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-----CeEEecCChh
Q psy6094 260 DIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-----RSETQQYPND 316 (455)
Q Consensus 260 ~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-----G~c~~L~t~~ 316 (455)
+++||+ | +.+-+++.||+||+||.+. |..|.++...
T Consensus 296 -~~~vi~--------~------------~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 296 -ADVMIT--------E------------LAPIDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred -CCEEEE--------c------------CCCHHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 778886 2 2234678999999999764 3677776643
No 62
>KOG4284|consensus
Probab=99.84 E-value=9.7e-21 Score=193.56 Aligned_cols=254 Identities=13% Similarity=0.140 Sum_probs=177.2
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh---------------------
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL--------------------- 94 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~--------------------- 94 (455)
|+...+......-|+.-..--..++|.+.|+++..+-++||++..|+|||..+. ..++
T Consensus 27 fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREia 106 (980)
T KOG4284|consen 27 FEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIA 106 (980)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhh
Confidence 444444444444444435555567799999999999999999999999994433 2222
Q ss_pred ------------------------------------hhcCCCCChHHHHHhc--cCCCCcCcc------hHHHHH-----
Q psy6094 95 ------------------------------------KRSETQQYPNDVLNML--KDPELEGVN------NDVIFS----- 125 (455)
Q Consensus 95 ------------------------------------e~~~~vg~p~~ll~~l--~d~~L~~~~------~D~ll~----- 125 (455)
+-...+|+|+|+++.. .--+...+. +|-|+.
T Consensus 107 VQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq 186 (980)
T KOG4284|consen 107 VQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQ 186 (980)
T ss_pred hHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHH
Confidence 1123355788877655 111222222 677663
Q ss_pred -HHHHHHHhcCCCCeEEEEccCCCCC-ccceEEeehhhh--------------hhhhcc--CCCCChHH-------HHHH
Q psy6094 126 -LLQHICTTQRPGAILVYCTYTFMGV-SPMKVFFCKNVL--------------QRLMKG--VGANSPKR-------WVKL 180 (455)
Q Consensus 126 -~lk~il~~~~~~~k~ilmSAT~~g~-~pv~~~~l~~~~--------------~~~~~~--~~~~~~~~-------l~~~ 180 (455)
-+..++...+...|++.+|||-|.. -..-..|++++. ..|+.. ..+...+. |...
T Consensus 187 ~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~v 266 (980)
T KOG4284|consen 187 DDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHV 266 (980)
T ss_pred HHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHH
Confidence 3566666778899999999998432 111111111110 122211 11121111 2333
Q ss_pred HHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCC
Q psy6094 181 LRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDD 260 (455)
Q Consensus 181 i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~ 260 (455)
+..-+-.+.||||.....++.++..|...+ +.+..+.|.|.|.+|..+|...+.-..+|+||||.-+||||-++
T Consensus 267 f~~ipy~QAlVF~~~~sra~~~a~~L~ssG------~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~ 340 (980)
T KOG4284|consen 267 FKSIPYVQALVFCDQISRAEPIATHLKSSG------LDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADN 340 (980)
T ss_pred HhhCchHHHHhhhhhhhhhhHHHHHhhccC------CCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccc
Confidence 333566789999999999999999999875 88999999999999999999999999999999999999999999
Q ss_pred eeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 261 IVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 261 V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
|..||| .| .|.....|.||.|||||.|. |.++.+.-
T Consensus 341 vNLVVN--------iD----------~p~d~eTY~HRIGRAgRFG~~G~aVT~~~ 377 (980)
T KOG4284|consen 341 VNLVVN--------ID----------APADEETYFHRIGRAGRFGAHGAAVTLLE 377 (980)
T ss_pred cceEEe--------cC----------CCcchHHHHHHhhhcccccccceeEEEec
Confidence 999999 44 34556778899999999998 99988876
No 63
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.83 E-value=1.3e-19 Score=189.34 Aligned_cols=110 Identities=17% Similarity=0.176 Sum_probs=100.4
Q ss_pred ccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCee
Q psy6094 183 SMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIV 262 (455)
Q Consensus 183 ~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~ 262 (455)
....++.+|||.|+.+++.+++.|+..+ +.+.++||+|+.++|..+.+.|.++..+|||||+....|||.|||+
T Consensus 227 ~~~~~~GIIYc~sRk~~E~ia~~L~~~g------~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVR 300 (590)
T COG0514 227 PQLSKSGIIYCLTRKKVEELAEWLRKNG------ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVR 300 (590)
T ss_pred cccCCCeEEEEeeHHhHHHHHHHHHHCC------CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCce
Confidence 3667889999999999999999999874 8999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 263 YVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 263 ~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
+||++++ |-|-++|.|-+|||||.|. ..|+-||+..
T Consensus 301 fViH~~l------------------P~s~EsYyQE~GRAGRDG~~a~aill~~~~ 337 (590)
T COG0514 301 FVIHYDL------------------PGSIESYYQETGRAGRDGLPAEAILLYSPE 337 (590)
T ss_pred EEEEecC------------------CCCHHHHHHHHhhccCCCCcceEEEeeccc
Confidence 9999554 4566788899999999886 9999999943
No 64
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.83 E-value=2.5e-19 Score=193.51 Aligned_cols=107 Identities=25% Similarity=0.158 Sum_probs=91.7
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeE
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVY 263 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~ 263 (455)
+....+|||.||+...+.++..|.... ...+..+||+++.++|..+.+.+++|..|++|||.-.|-||||.+|+.
T Consensus 251 ~~~~ttLIF~NTR~~aE~l~~~L~~~~-----~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdl 325 (814)
T COG1201 251 KKHRTTLIFTNTRSGAERLAFRLKKLG-----PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDL 325 (814)
T ss_pred hhcCcEEEEEeChHHHHHHHHHHHHhc-----CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceE
Confidence 344599999999999999999999875 267888999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcccccccCCCcccccccccchhhHHhhhcccCC----CCCCeEEecC
Q psy6094 264 VVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR----TLKRSETQQY 313 (455)
Q Consensus 264 VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR----~~~G~c~~L~ 313 (455)
||..| .|-|.+...||.||+|+ +..|..|...
T Consensus 326 VIq~~------------------SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 326 VIQLG------------------SPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred EEEeC------------------CcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99844 34566677899999996 2346666555
No 65
>KOG0337|consensus
Probab=99.82 E-value=2.7e-20 Score=182.66 Aligned_cols=255 Identities=15% Similarity=0.142 Sum_probs=178.8
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc--hhhhhh-hhcCCCC------ChHH--
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH--LDFITL-KRSETQQ------YPND-- 105 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq--lp~ll~-e~~~~vg------~p~~-- 105 (455)
|....++......+.+...--..++|...++.|+++++++..|.||||||-+ +|.+.. ....+.| .|.+
T Consensus 23 fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreL 102 (529)
T KOG0337|consen 23 FQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTREL 102 (529)
T ss_pred ccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHH
Confidence 5566677777777777776666677999999999999999999999999933 331111 1111222 1221
Q ss_pred ------------------------------------------------HHHhc--cCCCCcCcc------hHHHHHH---
Q psy6094 106 ------------------------------------------------VLNML--KDPELEGVN------NDVIFSL--- 126 (455)
Q Consensus 106 ------------------------------------------------ll~~l--~d~~L~~~~------~D~ll~~--- 126 (455)
++... .+-.|..+. +|.|+.+
T Consensus 103 a~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfq 182 (529)
T KOG0337|consen 103 ALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQ 182 (529)
T ss_pred HHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhH
Confidence 11111 111122221 7777755
Q ss_pred --HHHHHHhcCCCCeEEEEccCCC---------CC-ccceEEe------ehhhhhhhhccCCCCChHHHHHHHHc-cCCC
Q psy6094 127 --LQHICTTQRPGAILVYCTYTFM---------GV-SPMKVFF------CKNVLQRLMKGVGANSPKRWVKLLRS-MLVV 187 (455)
Q Consensus 127 --lk~il~~~~~~~k~ilmSAT~~---------g~-~pv~~~~------l~~~~~~~~~~~~~~~~~~l~~~i~~-~~~g 187 (455)
|..++.+.+.+.|.++||||+| |. .|+-+.. -+.....+.......+...|...+.. ..+.
T Consensus 183 eql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~ 262 (529)
T KOG0337|consen 183 EQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDK 262 (529)
T ss_pred HHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhcccccc
Confidence 7778878888999999999994 55 6665551 11111122233333344445554442 2244
Q ss_pred CEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeC
Q psy6094 188 PILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDC 267 (455)
Q Consensus 188 ~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~ 267 (455)
+.+||+++...++.+...|...+ +.+--+||+|++..|..-+..|..++..++|.||+|+||+|||..+-|||.
T Consensus 263 ~t~vf~~tk~hve~~~~ll~~~g------~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnviny 336 (529)
T KOG0337|consen 263 QTIVFVATKHHVEYVRGLLRDFG------GEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINY 336 (529)
T ss_pred ceeEEecccchHHHHHHHHHhcC------CCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccc
Confidence 89999999999999999999875 667779999999999999999999999999999999999999999999996
Q ss_pred CCC-cccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 268 GKT-KMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 268 g~~-k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
.++ +.+.| .||.||+.|.+. |..|.+....
T Consensus 337 d~p~~~klF-------------------vhRVgr~aragrtg~aYs~V~~~ 368 (529)
T KOG0337|consen 337 DFPPDDKLF-------------------VHRVGRVARAGRTGRAYSLVAST 368 (529)
T ss_pred cCCCCCceE-------------------EEEecchhhccccceEEEEEecc
Confidence 663 33333 388898888886 9999998843
No 66
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.82 E-value=1.8e-19 Score=182.67 Aligned_cols=325 Identities=15% Similarity=0.130 Sum_probs=206.0
Q ss_pred HHHhcCHHHHHHHHHHccCCCHHHHHHHHHH-HHcCCeEEEEcCCCCCcccc-----hhhhhh-----------------
Q psy6094 38 IRKLQSRRYQEMLEARKKLPSYQMRDAVLDM-VRNNQITVISGETGSGPPLH-----LDFITL----------------- 94 (455)
Q Consensus 38 ~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~-i~~~~~vii~~~TGSGKTtq-----lp~ll~----------------- 94 (455)
.+.-..++++.+++.++..-.-++|--.+++ +.+|++.+|++.|+||||.. +|-++.
T Consensus 197 deLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQ 276 (830)
T COG1202 197 DELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQ 276 (830)
T ss_pred cccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcc
Confidence 3556788999999999888788888887776 78999999999999999922 222221
Q ss_pred ------hh--------cCCCCChH--H---------------------HHHhc--cCCCCcCcc----------------
Q psy6094 95 ------KR--------SETQQYPN--D---------------------VLNML--KDPELEGVN---------------- 119 (455)
Q Consensus 95 ------e~--------~~~vg~p~--~---------------------ll~~l--~d~~L~~~~---------------- 119 (455)
++ ..+||..| + =+++| ....+.+++
T Consensus 277 Ky~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG 356 (830)
T COG1202 277 KYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERG 356 (830)
T ss_pred hHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcc
Confidence 11 11222000 0 11111 112333333
Q ss_pred --hHHHHHHHHHHHHhcCCCCeEEEEccCC--CCC----cc-ceEEeehhh--hhh-hhccCCCCChHHHHHHHHc----
Q psy6094 120 --NDVIFSLLQHICTTQRPGAILVYCTYTF--MGV----SP-MKVFFCKNV--LQR-LMKGVGANSPKRWVKLLRS---- 183 (455)
Q Consensus 120 --~D~ll~~lk~il~~~~~~~k~ilmSAT~--~g~----~p-v~~~~l~~~--~~~-~~~~~~~~~~~~l~~~i~~---- 183 (455)
-|-|++.|| ..-++-|+|.+|||+ |+. +. --+.|-+.+ ++. .+-+.+....-.+..-+++
T Consensus 357 ~RLdGLI~RLr----~l~~~AQ~i~LSATVgNp~elA~~l~a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~ 432 (830)
T COG1202 357 PRLDGLIGRLR----YLFPGAQFIYLSATVGNPEELAKKLGAKLVLYDERPVPLERHLVFARNESEKWDIIARLVKREFS 432 (830)
T ss_pred cchhhHHHHHH----HhCCCCeEEEEEeecCChHHHHHHhCCeeEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHh
Confidence 344444444 445799999999999 110 00 001111111 111 1111111111112222221
Q ss_pred -----cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCC
Q psy6094 184 -----MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITI 258 (455)
Q Consensus 184 -----~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI 258 (455)
.-.|+.+||.++++.+..++..|...+ +.+.|+|++||..+|+.+...|.++...+||+|-.++.|+|.
T Consensus 433 ~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG------~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDF 506 (830)
T COG1202 433 TESSKGYRGQTIVFTYSRRRCHELADALTGKG------LKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDF 506 (830)
T ss_pred hhhccCcCCceEEEecchhhHHHHHHHhhcCC------cccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCC
Confidence 457999999999999999999999875 889999999999999999999999999999999999999999
Q ss_pred CCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCC---CCeEEecCCh-----hhhcc----------
Q psy6094 259 DDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTL---KRSETQQYPN-----DVLNM---------- 320 (455)
Q Consensus 259 ~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~---~G~c~~L~t~-----~~~~~---------- 320 (455)
|.-.++.++ -.+-..|.|..++.|..|||||.+ .|++|.|.-. ..|++
T Consensus 507 PASQVIFEs--------------LaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL 572 (830)
T COG1202 507 PASQVIFES--------------LAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLL 572 (830)
T ss_pred chHHHHHHH--------------HHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHh
Confidence 975444431 112346999999999999999954 4999988661 11111
Q ss_pred CCCCcccccC------hHHHHHHHh-----hhcCCC------ChhhHHhHHhhhhhcccccCCCCCCcccCChHHHHHhh
Q psy6094 321 LKDPELEGVN------NDVIFSLLQ-----HICTTQ------RPGAILVFLPGWDTINSLHRSMCQSSFFNSCLLYEFAM 383 (455)
Q Consensus 321 ~~~PEi~r~~------~~~~L~~l~-----~~~~~P------~~~~i~~al~~L~~lgald~~~~l~~~~~T~lG~~l~~ 383 (455)
...||=..+. .+-+|.-.. ..++.- ..-..+.++..|.++|.++.+|+. +.+|+.|+.++.
T Consensus 573 ~s~~e~V~vey~ee~e~e~vLA~~~v~~s~~~i~~v~~~~~g~~~~~~k~l~~Lee~g~i~~~G~~--v~~T~yGrava~ 650 (830)
T COG1202 573 ESEPEPVIVEYDEEDEEENVLASAGVTNSLSVIERVNSLMLGAAFDPKKALSKLEEYGMIKKKGNI--VRPTPYGRAVAM 650 (830)
T ss_pred cCCCCcceeccCcHHHHHHHHHHhhhcCcHHHHhhcChhhccccCCHHHHHHHHHhcCCeeccCCE--eeeccccceeEE
Confidence 1223322222 222331100 001110 012356889999999999988865 567999999988
Q ss_pred CCCCh
Q psy6094 384 VDNKP 388 (455)
Q Consensus 384 lp~~p 388 (455)
-=+.|
T Consensus 651 ~Fl~p 655 (830)
T COG1202 651 SFLGP 655 (830)
T ss_pred eecCc
Confidence 66777
No 67
>KOG0349|consensus
Probab=99.81 E-value=8.3e-20 Score=179.42 Aligned_cols=113 Identities=17% Similarity=0.217 Sum_probs=99.8
Q ss_pred HHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCC
Q psy6094 181 LRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDD 260 (455)
Q Consensus 181 i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~ 260 (455)
+....-...++||.++.+++.|.+++.+.+ +..+.++++||+.-+.+|...++.|+++..|.++|||+|+||+||.+
T Consensus 500 i~~h~mdkaiifcrtk~dcDnLer~~~qkg---g~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g 576 (725)
T KOG0349|consen 500 IRRHAMDKAIIFCRTKQDCDNLERMMNQKG---GKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITG 576 (725)
T ss_pred hhhhccCceEEEEeccccchHHHHHHHHcC---CccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccC
Confidence 333556789999999999999999999875 35799999999999999999999999999999999999999999999
Q ss_pred eeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 261 IVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 261 V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
+-||||--+ |-.|.+|.||.||+||... |.++.|..
T Consensus 577 ~p~~invtl------------------pd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 577 LPFMINVTL------------------PDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred CceEEEEec------------------CcccchhhhhhhccchhhhcceeEEEee
Confidence 999999444 4556678899999999877 99999876
No 68
>PRK09401 reverse gyrase; Reviewed
Probab=99.76 E-value=5.2e-18 Score=192.75 Aligned_cols=121 Identities=19% Similarity=0.249 Sum_probs=88.0
Q ss_pred CCeEEEEccCCCCC-ccc---------e----EEeehhhhhhhhccCCCCChHHHHHHHHccCCCCEEEEcCCHHH---H
Q psy6094 137 GAILVYCTYTFMGV-SPM---------K----VFFCKNVLQRLMKGVGANSPKRWVKLLRSMLVVPILVFLPGWDT---I 199 (455)
Q Consensus 137 ~~k~ilmSAT~~g~-~pv---------~----~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~~g~iLVFlp~~~e---i 199 (455)
+.|++++|||++.+ ... . ..++.++.+.|.... .....+..++. ..++.+||||++... +
T Consensus 268 ~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~-~l~~~~LIFv~t~~~~~~a 344 (1176)
T PRK09401 268 KGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIVDE--DSVEKLVELVK-RLGDGGLIFVPSDKGKEYA 344 (1176)
T ss_pred CceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEEEcc--cHHHHHHHHHH-hcCCCEEEEEecccChHHH
Confidence 67899999999532 111 0 011122222222211 22333555554 334679999999777 9
Q ss_pred HHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEe----CCCCccCCCCCC-eeEEEeCCCCc
Q psy6094 200 NSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA----TNIAETSITIDD-IVYVVDCGKTK 271 (455)
Q Consensus 200 ~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kViva----Tniae~gitI~~-V~~VID~g~~k 271 (455)
+.+++.|+..+ +.+..+||++ .+.++.|++|+.+|+|| ||+|+||||||+ |+|||++|.|+
T Consensus 345 e~l~~~L~~~g------i~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 345 EELAEYLEDLG------INAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HHHHHHHHHCC------CcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 99999999875 8899999999 23458899999999999 799999999999 89999999998
No 69
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.76 E-value=4e-18 Score=194.72 Aligned_cols=106 Identities=20% Similarity=0.196 Sum_probs=89.3
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCC---------------------------CCCCeEEEeecCCCChhhHhhhhc
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFF---------------------------NSSRFQIIPLHSMLPTVSQKSIFN 236 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~---------------------------~~~~~~v~~lhs~l~~~~r~~v~~ 236 (455)
...+++|||++|+..++.++..|++.... ....+.+..+||+|++++|..+++
T Consensus 242 ~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~ 321 (1490)
T PRK09751 242 LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQ 321 (1490)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHH
Confidence 34678999999999999999999764210 001234778999999999999999
Q ss_pred CCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCC
Q psy6094 237 TPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKR 307 (455)
Q Consensus 237 ~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G 307 (455)
.|++|..+|||||+.+|.||||++|++||+.|. |.|.+++.||+|||||...|
T Consensus 322 ~fK~G~LrvLVATssLELGIDIg~VDlVIq~gs------------------P~sVas~LQRiGRAGR~~gg 374 (1490)
T PRK09751 322 ALKSGELRCVVATSSLELGIDMGAVDLVIQVAT------------------PLSVASGLQRIGRAGHQVGG 374 (1490)
T ss_pred HHHhCCceEEEeCcHHHccCCcccCCEEEEeCC------------------CCCHHHHHHHhCCCCCCCCC
Confidence 999999999999999999999999999999553 67889999999999996433
No 70
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.74 E-value=5.1e-17 Score=177.37 Aligned_cols=205 Identities=16% Similarity=0.135 Sum_probs=138.5
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcC--C----------CCCCC-------------------eEEEeecCCCChhhHh
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSS--F----------FNSSR-------------------FQIIPLHSMLPTVSQK 232 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~--~----------~~~~~-------------------~~v~~lhs~l~~~~r~ 232 (455)
..+|++|||++++.+....++.+.... . ....+ .-+.-+|++|+.++|.
T Consensus 251 ~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~ 330 (766)
T COG1204 251 AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQ 330 (766)
T ss_pred hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHH
Confidence 678999999999999999999988410 0 00111 1256678999999999
Q ss_pred hhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC---CeE
Q psy6094 233 SIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK---RSE 309 (455)
Q Consensus 233 ~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~---G~c 309 (455)
.+.+.|++|+.|||+||+.++.|++.|.-++||- | ...||+..| .+.+++..+.|..|||||.|= |..
T Consensus 331 ~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk-~---~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~ 401 (766)
T COG1204 331 LVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIK-D---TRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEA 401 (766)
T ss_pred HHHHHHhcCCceEEEechHHhhhcCCcceEEEEe-e---eEEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcE
Confidence 9999999999999999999999999998777773 2 234776333 368899999999999999652 555
Q ss_pred EecC-Chhh------hccCCCCcccccC--hHHHH--------------------HHHhhhcCCC-------ChhhHHhH
Q psy6094 310 TQQY-PNDV------LNMLKDPELEGVN--NDVIF--------------------SLLQHICTTQ-------RPGAILVF 353 (455)
Q Consensus 310 ~~L~-t~~~------~~~~~~PEi~r~~--~~~~L--------------------~~l~~~~~~P-------~~~~i~~a 353 (455)
+.+- +.+. ......||..... .+..+ .|+....-.| ....+..+
T Consensus 402 ~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~ 481 (766)
T COG1204 402 IILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILAS 481 (766)
T ss_pred EEEecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHH
Confidence 5444 3111 1123344441111 11111 1222222222 34567788
Q ss_pred Hhhhhhcc-cccCCCCCCcccCChHHHHHhhCCCChhHHHHHHHhhc
Q psy6094 354 LPGWDTIN-SLHRSMCQSSFFNSCLLYEFAMVDNKPKEIITVRDCLS 399 (455)
Q Consensus 354 l~~L~~lg-ald~~~~l~~~~~T~lG~~l~~lp~~p~~~l~iaa~ls 399 (455)
+..|.+.+ .++.... .+.+|++|+.++++.++|+.+..+...+.
T Consensus 482 ~~~L~~~~~~~~~~~~--~~~ate~g~~~s~~yi~~~sa~~~~~~l~ 526 (766)
T COG1204 482 LRYLEENGLILDADWE--ALHATELGKLVSRLYIDPESAKIFRDLLA 526 (766)
T ss_pred HHHHHhccceeecccc--ccchhHHHHHhhhccCCHHHHHHHHHHHH
Confidence 88888876 5554432 35679999999999999965555544443
No 71
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.74 E-value=3.1e-17 Score=181.28 Aligned_cols=248 Identities=21% Similarity=0.206 Sum_probs=158.5
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcc--cchhhhhh------------------------------
Q psy6094 47 QEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPP--LHLDFITL------------------------------ 94 (455)
Q Consensus 47 ~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKT--tqlp~ll~------------------------------ 94 (455)
.+.+..|.....|.||.+.++.+.+|++|||+.+|||||| +++| |++
T Consensus 60 ~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllP-Ild~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~ 138 (851)
T COG1205 60 KSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLP-ILDHLLRDPSARALLLYPTNALANDQAERLREL 138 (851)
T ss_pred HHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHH-HHHHHhhCcCccEEEEechhhhHhhHHHHHHHH
Confidence 4556677888899999999999999999999999999999 4444 222
Q ss_pred --hhcCCCC---C----hHH------------------HHHhc----cC--------------CCCcCcc----hHH--H
Q psy6094 95 --KRSETQQ---Y----PND------------------VLNML----KD--------------PELEGVN----NDV--I 123 (455)
Q Consensus 95 --e~~~~vg---~----p~~------------------ll~~l----~d--------------~~L~~~~----~D~--l 123 (455)
..+..++ | |.. +++.+ .+ ..++.|. +++ |
T Consensus 139 ~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~l 218 (851)
T COG1205 139 ISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALL 218 (851)
T ss_pred HHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHH
Confidence 1121122 1 110 22221 00 0222332 443 2
Q ss_pred HHHHHHHHHhcCCCCeEEEEccCC----------CCC-ccce-----------EEeehhhhhhhhccC-CCCChHHHHHH
Q psy6094 124 FSLLQHICTTQRPGAILVYCTYTF----------MGV-SPMK-----------VFFCKNVLQRLMKGV-GANSPKRWVKL 180 (455)
Q Consensus 124 l~~lk~il~~~~~~~k~ilmSAT~----------~g~-~pv~-----------~~~l~~~~~~~~~~~-~~~~~~~l~~~ 180 (455)
+-.|++.+.....++|+|.+|||+ .|+ |.+. .+.+.++........ .......+...
T Consensus 219 lRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~ 298 (851)
T COG1205 219 LRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATL 298 (851)
T ss_pred HHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHH
Confidence 233555554455789999999999 222 2111 111111100000000 00111111111
Q ss_pred HHc--cCCCCEEEEcCCHHHHHHHHHH----HHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCcc
Q psy6094 181 LRS--MLVVPILVFLPGWDTINSLHRS----MCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAET 254 (455)
Q Consensus 181 i~~--~~~g~iLVFlp~~~ei~~l~~~----L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~ 254 (455)
+.. ..+-..|||+.++..++.+... +...+ ......+..+||+++.++|.++...++.|..++++|||.+|-
T Consensus 299 ~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~--~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Alel 376 (851)
T COG1205 299 AALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG--GKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALEL 376 (851)
T ss_pred HHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc--hhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhh
Confidence 111 5677899999999999998633 32222 011245888999999999999999999999999999999999
Q ss_pred CCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 255 SITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 255 gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
||||.+++.||.+|+| ..|..+++||+|||||.+. +..+-.+.
T Consensus 377 gidiG~ldavi~~g~P-----------------~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 377 GIDIGSLDAVIAYGYP-----------------GVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred ceeehhhhhHhhcCCC-----------------CchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 9999999999998874 1277889999999999873 54444444
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.73 E-value=3.7e-17 Score=165.77 Aligned_cols=88 Identities=18% Similarity=0.193 Sum_probs=72.9
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeE
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVY 263 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~ 263 (455)
..++++||||++.+.++.+++.|+..+. ++.+..+||.+++.+|.++. +.+|+||||++|+||||+++ +
T Consensus 270 ~~~~k~LIf~nt~~~~~~l~~~L~~~~~----~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~ 338 (357)
T TIGR03158 270 LPGERGAIILDSLDEVNRLSDLLQQQGL----GDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-W 338 (357)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHhhhCC----CceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-e
Confidence 3567899999999999999999987531 36788999999999997764 46899999999999999987 5
Q ss_pred EEeCCCCcccccccCCCcccccccccchhhHHhhhcccC
Q psy6094 264 VVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAG 302 (455)
Q Consensus 264 VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaG 302 (455)
||- + |.+.++|.||+||+|
T Consensus 339 vi~---------~-----------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 339 LIF---------S-----------ARDAAAFWQRLGRLG 357 (357)
T ss_pred EEE---------C-----------CCCHHHHhhhcccCC
Confidence 551 1 345678999999998
No 73
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.72 E-value=5.4e-17 Score=171.65 Aligned_cols=107 Identities=14% Similarity=0.050 Sum_probs=90.1
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeC-CCCccCCCCCCee
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLAT-NIAETSITIDDIV 262 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaT-niae~gitI~~V~ 262 (455)
..++.+|||+...+.++.+++.|...+ ..+..+||++++++|..+++.+..|...||||| +++.+|+|+|+++
T Consensus 342 ~~~~~~lV~~~~~~h~~~L~~~L~~~g------~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld 415 (501)
T PHA02558 342 KKGENTFVMFKYVEHGKPLYEMLKKVY------DKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLH 415 (501)
T ss_pred hcCCCEEEEEEEHHHHHHHHHHHHHcC------CCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccccccc
Confidence 456789999999999999999999864 689999999999999999999999999999998 9999999999999
Q ss_pred EEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCe-EEecCC
Q psy6094 263 YVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRS-ETQQYP 314 (455)
Q Consensus 263 ~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~-c~~L~t 314 (455)
.||. ++| +-|+..+.||+||+||.++|. -..+|+
T Consensus 416 ~vIl--------~~p----------~~s~~~~~QriGR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 416 HVIF--------AHP----------SKSKIIVLQSIGRVLRKHGSKSIATVWD 450 (501)
T ss_pred EEEE--------ecC----------CcchhhhhhhhhccccCCCCCceEEEEE
Confidence 9995 221 235677889999999988753 334443
No 74
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.70 E-value=1.8e-16 Score=180.41 Aligned_cols=87 Identities=11% Similarity=0.219 Sum_probs=75.2
Q ss_pred HHHHHHccCCCCEEEEcCCH---HHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEe----C
Q psy6094 177 WVKLLRSMLVVPILVFLPGW---DTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA----T 249 (455)
Q Consensus 177 l~~~i~~~~~g~iLVFlp~~---~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kViva----T 249 (455)
+..++. ..++.+|||+++. +.++.+++.|.+.+ +.+..+||++++ .+++.|++|+.+|+|| |
T Consensus 318 L~~ll~-~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g------~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~t 386 (1171)
T TIGR01054 318 LLEIVK-KLGTGGIVYVSIDYGKEKAEEIAEFLENHG------VKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYY 386 (1171)
T ss_pred HHHHHH-HcCCCEEEEEeccccHHHHHHHHHHHHhCC------ceEEEEeCCCCH----HHHHHHHcCCCCEEEEecccc
Confidence 445554 3356799999999 99999999998864 889999999973 6889999999999999 5
Q ss_pred CCCccCCCCCC-eeEEEeCCCCcccc
Q psy6094 250 NIAETSITIDD-IVYVVDCGKTKMSN 274 (455)
Q Consensus 250 niae~gitI~~-V~~VID~g~~k~~~ 274 (455)
|+|+||||||+ |+|||++|.|+.+.
T Consensus 387 dv~aRGIDip~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 387 GTLVRGLDLPERVRYAVFLGVPKFKV 412 (1171)
T ss_pred CcccccCCCCccccEEEEECCCCEEE
Confidence 99999999999 89999999998653
No 75
>PRK14701 reverse gyrase; Provisional
Probab=99.69 E-value=2.7e-17 Score=190.91 Aligned_cols=120 Identities=15% Similarity=0.085 Sum_probs=91.3
Q ss_pred HHHHHHccCCCCEEEEcCCHHHH---HHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeC----
Q psy6094 177 WVKLLRSMLVVPILVFLPGWDTI---NSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLAT---- 249 (455)
Q Consensus 177 l~~~i~~~~~g~iLVFlp~~~ei---~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaT---- 249 (455)
+..++.. .+..+||||+++..+ +.+++.|...+ +.+.++||+ |..+++.|.+|..+|+|||
T Consensus 322 L~~ll~~-~g~~gIVF~~t~~~~e~ae~la~~L~~~G------i~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~ 389 (1638)
T PRK14701 322 VRELLKK-LGKGGLIFVPIDEGAEKAEEIEKYLLEDG------FKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYY 389 (1638)
T ss_pred HHHHHHh-CCCCeEEEEeccccchHHHHHHHHHHHCC------CeEEEecch-----HHHHHHHHHcCCCCEEEEecCCC
Confidence 5555553 356899999998765 88999999874 899999995 8889999999999999999
Q ss_pred CCCccCCCCCC-eeEEEeCCCCcccc----cccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 250 NIAETSITIDD-IVYVVDCGKTKMSN----FDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 250 niae~gitI~~-V~~VID~g~~k~~~----yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
|+|+||||+|+ |+|||+.|+||... |.+.... .+. ...+.++.|||||.+. +.|+..|.
T Consensus 390 gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~-----~~~-~~~~~~~~~~a~~~g~~~~~~~~~~ 454 (1638)
T PRK14701 390 GTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR-----ILG-LLSEILKIEEELKEGIPIEGVLDVF 454 (1638)
T ss_pred CeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh-----hhc-chHHHHHhhhhcccCCcchhHHHhH
Confidence 69999999999 99999999998442 3222211 011 2335678899999774 77764444
No 76
>KOG0354|consensus
Probab=99.68 E-value=5.9e-16 Score=164.11 Aligned_cols=112 Identities=20% Similarity=0.245 Sum_probs=89.6
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCC-CCCeEEEeec----CCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFN-SSRFQIIPLH----SMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITI 258 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~-~~~~~v~~lh----s~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI 258 (455)
.+...++||+.+++.+..+.+.|....... .+..-+-.=+ .+|++++|.++++.|++|..+|||||.|||=|+||
T Consensus 411 ~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI 490 (746)
T KOG0354|consen 411 NPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDI 490 (746)
T ss_pred CCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCc
Confidence 566789999999999999999998422110 0011111111 58999999999999999999999999999999999
Q ss_pred CCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCC
Q psy6094 259 DDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYP 314 (455)
Q Consensus 259 ~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t 314 (455)
+.++.||= ||..++.- ...||+|| ||...|.|+.|++
T Consensus 491 ~ec~lVIc--------Yd~~snpI----------rmIQrrGR-gRa~ns~~vll~t 527 (746)
T KOG0354|consen 491 GECNLVIC--------YDYSSNPI----------RMVQRRGR-GRARNSKCVLLTT 527 (746)
T ss_pred ccccEEEE--------ecCCccHH----------HHHHHhcc-ccccCCeEEEEEc
Confidence 99999996 76665533 35599999 9999999999999
No 77
>PRK13766 Hef nuclease; Provisional
Probab=99.65 E-value=1.3e-15 Score=169.62 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=94.6
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCC--------CChhhHhhhhcCCCCCceEEEEeCCCCccC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSM--------LPTVSQKSIFNTPPEGVRKIVLATNIAETS 255 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~--------l~~~~r~~v~~~~~~g~~kVivaTniae~g 255 (455)
..++.+|||+++.+.++.+.+.|...+ +.+..+||. +++.+|.++++.|+.|..+|+|||++++.|
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~~------~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eG 436 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKEG------IKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEG 436 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhCC------CceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcC
Confidence 457889999999999999999997654 556677775 999999999999999999999999999999
Q ss_pred CCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCCh
Q psy6094 256 ITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPN 315 (455)
Q Consensus 256 itI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~ 315 (455)
+|+|++++||+ ||+. .|...+.||+||+||.++|.+|.|+++
T Consensus 437 ldi~~~~~VI~--------yd~~----------~s~~r~iQR~GR~gR~~~~~v~~l~~~ 478 (773)
T PRK13766 437 LDIPSVDLVIF--------YEPV----------PSEIRSIQRKGRTGRQEEGRVVVLIAK 478 (773)
T ss_pred CCcccCCEEEE--------eCCC----------CCHHHHHHHhcccCcCCCCEEEEEEeC
Confidence 99999999998 6643 345568899999999999999999983
No 78
>KOG0352|consensus
Probab=99.64 E-value=2.1e-15 Score=148.58 Aligned_cols=108 Identities=16% Similarity=0.153 Sum_probs=95.2
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEE
Q psy6094 185 LVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYV 264 (455)
Q Consensus 185 ~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~V 264 (455)
..|..+|+|.|+++++.++-.|...+ +....+|++|-..+|..|.+.+-++..-||+||+-...|+|-|+|++|
T Consensus 254 ~~GCGIVYCRTR~~cEq~AI~l~~~G------i~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFV 327 (641)
T KOG0352|consen 254 FTGCGIVYCRTRNECEQVAIMLEIAG------IPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFV 327 (641)
T ss_pred cCcceEEEeccHHHHHHHHHHhhhcC------cchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEE
Confidence 46889999999999999999988775 788999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 265 VDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 265 ID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
|+ ||+. .+-+-|.|-.|||||.|. ..|-.-|+++
T Consensus 328 iH--------W~~~----------qn~AgYYQESGRAGRDGk~SyCRLYYsR~ 362 (641)
T KOG0352|consen 328 IH--------WSPS----------QNLAGYYQESGRAGRDGKRSYCRLYYSRQ 362 (641)
T ss_pred Ee--------cCch----------hhhHHHHHhccccccCCCccceeeeeccc
Confidence 98 6544 445678899999999988 6776667743
No 79
>PRK09694 helicase Cas3; Provisional
Probab=99.63 E-value=6.9e-15 Score=162.43 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=79.2
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHh----hhhcCC-CCCc---eEEEEeCCCCccC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQK----SIFNTP-PEGV---RKIVLATNIAETS 255 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~----~v~~~~-~~g~---~kVivaTniae~g 255 (455)
..++.+|||+||.+.++.+++.|++.. .....+..+||++++.+|. ++++.| ++|+ .+|+|||+|+|+|
T Consensus 558 ~~g~~vLVf~NTV~~Aq~ly~~L~~~~---~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~G 634 (878)
T PRK09694 558 NAGAQVCLICNLVDDAQKLYQRLKELN---NTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQS 634 (878)
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhhC---CCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhhe
Confidence 467889999999999999999998653 1246799999999999994 566667 5565 4799999999999
Q ss_pred CCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCC
Q psy6094 256 ITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTL 305 (455)
Q Consensus 256 itI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~ 305 (455)
+|| |+++||..- ....++.||+||+||.+
T Consensus 635 LDI-d~DvlItdl--------------------aPidsLiQRaGR~~R~~ 663 (878)
T PRK09694 635 LDL-DFDWLITQL--------------------CPVDLLFQRLGRLHRHH 663 (878)
T ss_pred eec-CCCeEEECC--------------------CCHHHHHHHHhccCCCC
Confidence 999 578888521 22468889999999964
No 80
>KOG0351|consensus
Probab=99.62 E-value=5.6e-15 Score=162.90 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=99.3
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeE
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVY 263 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~ 263 (455)
.+.+.+||+|.++.+++.++..|+..+ .....+|++|+..+|..|...|-.++.+||+||=....|||-|||++
T Consensus 483 ~~~~s~IIYC~sr~~ce~vs~~L~~~~------~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ 556 (941)
T KOG0351|consen 483 HPDQSGIIYCLSRKECEQVSAVLRSLG------KSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRF 556 (941)
T ss_pred CCCCCeEEEeCCcchHHHHHHHHHHhc------hhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeE
Confidence 678899999999999999999999875 78899999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 264 VVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 264 VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
||+++++| |-+.|.|-+|||||-|- ..|..+|+..
T Consensus 557 ViH~~lPk------------------s~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 557 VIHYSLPK------------------SFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred EEECCCch------------------hHHHHHHhccccCcCCCcceeEEecchh
Confidence 99988865 33456699999999887 9999999944
No 81
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.62 E-value=8.7e-15 Score=141.05 Aligned_cols=106 Identities=20% Similarity=0.307 Sum_probs=84.0
Q ss_pred HHHHHHc--cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCcc
Q psy6094 177 WVKLLRS--MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAET 254 (455)
Q Consensus 177 l~~~i~~--~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~ 254 (455)
+..+|.. ..+.++|||+|+..-.+.++..|+..- +...+...||. .+.|.+..+.|++|+.+++++|.|+||
T Consensus 294 l~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~----~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILER 367 (441)
T COG4098 294 LKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKL----PKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILER 367 (441)
T ss_pred HHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhC----Cccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhc
Confidence 5555554 567899999999999999999996543 24667788876 456777888899999999999999999
Q ss_pred CCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCC
Q psy6094 255 SITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRT 304 (455)
Q Consensus 255 gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~ 304 (455)
|+|+|+|+++|- +... .--|+++..|-+||+||.
T Consensus 368 GVTfp~vdV~Vl---------gaeh-------~vfTesaLVQIaGRvGRs 401 (441)
T COG4098 368 GVTFPNVDVFVL---------GAEH-------RVFTESALVQIAGRVGRS 401 (441)
T ss_pred ccccccceEEEe---------cCCc-------ccccHHHHHHHhhhccCC
Confidence 999999997662 1111 124788999999999994
No 82
>KOG0952|consensus
Probab=99.62 E-value=7.8e-15 Score=157.80 Aligned_cols=126 Identities=14% Similarity=0.120 Sum_probs=96.0
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCC--------CCC--C-------eEEEeecCCCChhhHhhhhcCCCCCceEEE
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFF--------NSS--R-------FQIIPLHSMLPTVSQKSIFNTPPEGVRKIV 246 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~--------~~~--~-------~~v~~lhs~l~~~~r~~v~~~~~~g~~kVi 246 (455)
..+.++||||+++.+..+.++.|.+.... .++ + .-+...|+||.-++|..+.+-|..|..+|+
T Consensus 347 ~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL 426 (1230)
T KOG0952|consen 347 QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVL 426 (1230)
T ss_pred HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEE
Confidence 56889999999999999999999875432 111 1 235567899999999999999999999999
Q ss_pred EeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCC---CCeEEecCChhh
Q psy6094 247 LATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTL---KRSETQQYPNDV 317 (455)
Q Consensus 247 vaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~---~G~c~~L~t~~~ 317 (455)
+||..++-|+++|+-.++|- | .+.||+..|.-. -.+-....|--|||||.+ .|..+-+-+.+.
T Consensus 427 ~cTaTLAwGVNLPA~aViIK-G---T~~ydsskg~f~----dlgilDVlQifGRAGRPqFd~~G~giIiTt~dk 492 (1230)
T KOG0952|consen 427 CCTATLAWGVNLPAYAVIIK-G---TQVYDSSKGSFV----DLGILDVLQIFGRAGRPQFDSSGEGIIITTRDK 492 (1230)
T ss_pred EecceeeeccCCcceEEEec-C---CcccccccCcee----eehHHHHHHHHhccCCCCCCCCceEEEEecccH
Confidence 99999999999998666663 3 346888776321 234456779999999954 377776666443
No 83
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.60 E-value=1.7e-14 Score=145.68 Aligned_cols=111 Identities=20% Similarity=0.237 Sum_probs=91.7
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeE--EEe-----ecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQ--IIP-----LHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSI 256 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~--v~~-----lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gi 256 (455)
..+..++||..-++.++.+.+.|...+. ... .+. --.||+|.+|.++++.|+.|..+|+|||.|+|-|+
T Consensus 364 ~~~~RvIVFT~yRdTae~i~~~L~~~~~----~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGL 439 (542)
T COG1111 364 NGDSRVIVFTEYRDTAEEIVNFLKKIGI----KARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGL 439 (542)
T ss_pred CCCceEEEEehhHhHHHHHHHHHHhcCC----cceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccC
Confidence 3456899999999999999999998753 121 111 12579999999999999999999999999999999
Q ss_pred CCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCChh
Q psy6094 257 TIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPND 316 (455)
Q Consensus 257 tI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~ 316 (455)
|||++++||= |+|-. |-=-+.||.||+||..+|..|-|+++.
T Consensus 440 DIp~vDlVif--------YEpvp----------SeIR~IQR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 440 DIPEVDLVIF--------YEPVP----------SEIRSIQRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred CCCcccEEEE--------ecCCc----------HHHHHHHhhCccccCCCCeEEEEEecC
Confidence 9999999994 65432 223467999999999999999999955
No 84
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.56 E-value=1e-14 Score=152.87 Aligned_cols=154 Identities=16% Similarity=0.149 Sum_probs=114.8
Q ss_pred HHHhcCC-CCeEEEEccCC----------------------CCCccceEEeehhhhhhhhccCCCCChHHHHHHHHc--c
Q psy6094 130 ICTTQRP-GAILVYCTYTF----------------------MGVSPMKVFFCKNVLQRLMKGVGANSPKRWVKLLRS--M 184 (455)
Q Consensus 130 il~~~~~-~~k~ilmSAT~----------------------~g~~pv~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~--~ 184 (455)
.+..+.. .+.+++||||+ +||.|+..+.+.+-- ...+...+.. .
T Consensus 403 ~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~-----------~~~v~e~i~~ei~ 471 (677)
T COG1200 403 ALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHER-----------RPEVYERIREEIA 471 (677)
T ss_pred HHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEecccc-----------HHHHHHHHHHHHH
Confidence 3435556 68999999999 677888877765311 1122333332 4
Q ss_pred CCCCEEEEcCCHHHH--------HHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCC
Q psy6094 185 LVVPILVFLPGWDTI--------NSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSI 256 (455)
Q Consensus 185 ~~g~iLVFlp~~~ei--------~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gi 256 (455)
.+.++-+-||=.+|- +.+++.|... .+++.+..+||.|+.++.++|++.|++|..+|+|||.|.|-||
T Consensus 472 ~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~----~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGV 547 (677)
T COG1200 472 KGRQAYVVCPLIEESEKLELQAAEELYEELKSF----LPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGV 547 (677)
T ss_pred cCCEEEEEeccccccccchhhhHHHHHHHHHHH----cccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecc
Confidence 567788888865544 4455566532 2468899999999999999999999999999999999999999
Q ss_pred CCCCeeEEEeCCCCccccccc-CCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 257 TIDDIVYVVDCGKTKMSNFDV-KDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 257 tI~~V~~VID~g~~k~~~yd~-~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
|+||.++.|- +|+ +-|+ |+..|-+||+||... +.|+-+|...
T Consensus 548 dVPnATvMVI--------e~AERFGL----------aQLHQLRGRVGRG~~qSyC~Ll~~~~ 591 (677)
T COG1200 548 DVPNATVMVI--------ENAERFGL----------AQLHQLRGRVGRGDLQSYCVLLYKPP 591 (677)
T ss_pred cCCCCeEEEE--------echhhhhH----------HHHHHhccccCCCCcceEEEEEeCCC
Confidence 9999998774 442 3454 456699999999776 9999999843
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.53 E-value=7.7e-14 Score=152.26 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEeecCCCCh--hhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEE--eCCCCccc
Q psy6094 198 TINSLHRSMCQSSFFNSSRFQIIPLHSMLPT--VSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVV--DCGKTKMS 273 (455)
Q Consensus 198 ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~--~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VI--D~g~~k~~ 273 (455)
.++++++.|.+.. ++..+..+|+++.+ .+++++++.|++|+..|+|+|+++++|+|+|+|+.|+ |.+.
T Consensus 438 G~e~~~e~l~~~f----p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~---- 509 (679)
T PRK05580 438 GTERLEEELAELF----PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADL---- 509 (679)
T ss_pred cHHHHHHHHHHhC----CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCch----
Confidence 4555556665542 24678999999975 5688999999999999999999999999999999885 5322
Q ss_pred ccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEe
Q psy6094 274 NFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQ 311 (455)
Q Consensus 274 ~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~ 311 (455)
..+...+...--.-+.+.|++|||||.+. |.|+-
T Consensus 510 ----~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 510 ----GLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred ----hccCCccchHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 22222222112223567899999999665 88883
No 86
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.53 E-value=4.2e-14 Score=152.48 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=86.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCC-ceEEEEeCCCCccCCCCCCeeE
Q psy6094 185 LVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEG-VRKIVLATNIAETSITIDDIVY 263 (455)
Q Consensus 185 ~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g-~~kVivaTniae~gitI~~V~~ 263 (455)
.+..+|||+.....++.+++.|. +..+||++++.+|.++++.|+.| ..++||+|+++.+|||+|++++
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L~-----------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~v 563 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKLG-----------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANV 563 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHcC-----------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCE
Confidence 56799999999998888887763 23489999999999999999865 7799999999999999999999
Q ss_pred EEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeE-------EecCCh
Q psy6094 264 VVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSE-------TQQYPN 315 (455)
Q Consensus 264 VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c-------~~L~t~ 315 (455)
||. ++.. +-|+.++.||.||++|.++ |.+ |.|.+.
T Consensus 564 vI~--------~s~~---------~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~ 606 (732)
T TIGR00603 564 LIQ--------ISSH---------YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSK 606 (732)
T ss_pred EEE--------eCCC---------CCCHHHHHHHhcccccCCCCCccccccceEEEEecC
Confidence 997 3322 2478899999999999887 555 888883
No 87
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.52 E-value=2.4e-14 Score=152.63 Aligned_cols=114 Identities=18% Similarity=0.127 Sum_probs=91.3
Q ss_pred HHHHHHc--cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCcc
Q psy6094 177 WVKLLRS--MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAET 254 (455)
Q Consensus 177 l~~~i~~--~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~ 254 (455)
+...+.. ..+.++|||+++.++++.+++.|...+ +.+..|||...+.++..+...+.+ .+|+||||+|.|
T Consensus 462 L~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~g------i~~~~Lhg~~~~rE~~ii~~ag~~--g~VlVATdmAgR 533 (656)
T PRK12898 462 VAARVRELHAQGRPVLVGTRSVAASERLSALLREAG------LPHQVLNAKQDAEEAAIVARAGQR--GRITVATNMAGR 533 (656)
T ss_pred HHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC------CCEEEeeCCcHHHHHHHHHHcCCC--CcEEEEccchhc
Confidence 4444433 236789999999999999999999874 889999999776666555554444 469999999999
Q ss_pred CCCCC---Cee-----EEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 255 SITID---DIV-----YVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 255 gitI~---~V~-----~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
|+||+ +|. +||++.++ -|...+.||+||+||.|. |.|+.+++.+
T Consensus 534 GtDI~l~~~V~~~GGLhVI~~d~P------------------~s~r~y~hr~GRTGRqG~~G~s~~~is~e 586 (656)
T PRK12898 534 GTDIKLEPGVAARGGLHVILTERH------------------DSARIDRQLAGRCGRQGDPGSYEAILSLE 586 (656)
T ss_pred ccCcCCccchhhcCCCEEEEcCCC------------------CCHHHHHHhcccccCCCCCeEEEEEechh
Confidence 99999 776 99996553 455567799999999986 9999999943
No 88
>KOG0921|consensus
Probab=99.48 E-value=1.9e-15 Score=159.67 Aligned_cols=302 Identities=8% Similarity=-0.152 Sum_probs=219.5
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-h------------hhh-----------------
Q psy6094 45 RYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-F------------ITL----------------- 94 (455)
Q Consensus 45 ~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~------------ll~----------------- 94 (455)
....+...+.-+|+.++...|++++..+.+.++-+.|||||+++.| + +.+
T Consensus 394 ~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg 473 (1282)
T KOG0921|consen 394 RVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYG 473 (1282)
T ss_pred ceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccccccccccccc
Confidence 3334446677899999999999999999999999999999999866 1 222
Q ss_pred ---hhcCCCC----C--------hH-----------H----HHHhc--cCCCCc------CcchHHHHHHHHHHHHhcCC
Q psy6094 95 ---KRSETQQ----Y--------PN-----------D----VLNML--KDPELE------GVNNDVIFSLLQHICTTQRP 136 (455)
Q Consensus 95 ---e~~~~vg----~--------p~-----------~----ll~~l--~d~~L~------~~~~D~ll~~lk~il~~~~~ 136 (455)
+.+..++ + |+ + +++.| ..+.|. .++||+++.+++.+.
T Consensus 474 ~i~fctvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f~~~f~~~p----- 548 (1282)
T KOG0921|consen 474 SIMFCTVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDTDLFTNFFSSIP----- 548 (1282)
T ss_pred ceeeeccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccchhhhhhhhcccc-----
Confidence 1111111 0 11 1 44444 222222 122888887776654
Q ss_pred CCeEEEEccCC-----------------CCC-ccceEEeehhhhhhhhc-------------------------cCC--C
Q psy6094 137 GAILVYCTYTF-----------------MGV-SPMKVFFCKNVLQRLMK-------------------------GVG--A 171 (455)
Q Consensus 137 ~~k~ilmSAT~-----------------~g~-~pv~~~~l~~~~~~~~~-------------------------~~~--~ 171 (455)
+++++++|+ +++ ++++.++.++-.+.... ... +
T Consensus 549 --~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~ 626 (1282)
T KOG0921|consen 549 --DVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIP 626 (1282)
T ss_pred --ceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcch
Confidence 669999999 566 77666654332110000 000 0
Q ss_pred ----C--ChHH----HHHHH-HccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCC
Q psy6094 172 ----N--SPKR----WVKLL-RSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPE 240 (455)
Q Consensus 172 ----~--~~~~----l~~~i-~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~ 240 (455)
. ...+ +..+| .-.+++..|+||+++.-+......+.....+......+.+.|..+...++..+++..+.
T Consensus 627 f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~s 706 (1282)
T KOG0921|consen 627 FGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILS 706 (1282)
T ss_pred hHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccc
Confidence 0 0111 11122 22678999999999999988888888877777778899999999999999999999999
Q ss_pred CceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCCh---hh
Q psy6094 241 GVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPN---DV 317 (455)
Q Consensus 241 g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~---~~ 317 (455)
+..+++..|+.+++.+++..+.+|++++..+.+.+-....++...+.|-++-.-.||.|+++|...+.||.+.+. ..
T Consensus 707 tniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~e 786 (1282)
T KOG0921|consen 707 TNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAE 786 (1282)
T ss_pred cceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHh
Confidence 999999999999999999999999999999999888888999999999999999999999999999999999994 45
Q ss_pred hccCCCCcccccC--------hHHHH----HHHhhhcCCCChhhHHhH
Q psy6094 318 LNMLKDPELEGVN--------NDVIF----SLLQHICTTQRPGAILVF 353 (455)
Q Consensus 318 ~~~~~~PEi~r~~--------~~~~L----~~l~~~~~~P~~~~i~~a 353 (455)
|..++.|||.++. ..+.+ .+..+++.+|+......+
T Consensus 787 m~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~ 834 (1282)
T KOG0921|consen 787 MFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMG 834 (1282)
T ss_pred hhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhh
Confidence 6777888887654 33444 334466666655554433
No 89
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.47 E-value=1.2e-13 Score=152.27 Aligned_cols=154 Identities=17% Similarity=0.125 Sum_probs=122.9
Q ss_pred HHHHHhcCCCCeEEEEccCC---------------------C-CCccceEEeehhhhhhhhccCCCCChHHHHHHHHc--
Q psy6094 128 QHICTTQRPGAILVYCTYTF---------------------M-GVSPMKVFFCKNVLQRLMKGVGANSPKRWVKLLRS-- 183 (455)
Q Consensus 128 k~il~~~~~~~k~ilmSAT~---------------------~-g~~pv~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~-- 183 (455)
|+-++..+.+..++-||||+ | +|+||..+..+.- +..+...|..
T Consensus 733 KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d------------~~~ireAI~REl 800 (1139)
T COG1197 733 KEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYD------------DLLIREAILREL 800 (1139)
T ss_pred HHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCC------------hHHHHHHHHHHH
Confidence 55555778899999999999 3 3488887765421 1112222221
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeE
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVY 263 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~ 263 (455)
..+|++-.-.|..++|+.+++.|+... +..++...||+|+..+-..+|..|-+|...|+|||.|.|+|||||++.-
T Consensus 801 ~RgGQvfYv~NrV~~Ie~~~~~L~~LV----PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANT 876 (1139)
T COG1197 801 LRGGQVFYVHNRVESIEKKAERLRELV----PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANT 876 (1139)
T ss_pred hcCCEEEEEecchhhHHHHHHHHHHhC----CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCce
Confidence 568999999999999999999999875 4789999999999999999999999999999999999999999999987
Q ss_pred EEeCCCCcccccc-cCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCCh
Q psy6094 264 VVDCGKTKMSNFD-VKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPN 315 (455)
Q Consensus 264 VID~g~~k~~~yd-~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~ 315 (455)
.|- .+ ..-|+ |+..|-+||+||... |.||-||+.
T Consensus 877 iII--------e~AD~fGL----------sQLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 877 III--------ERADKFGL----------AQLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred EEE--------eccccccH----------HHHHHhccccCCccceEEEEEeecC
Confidence 762 11 12343 456699999999877 999999993
No 90
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=2e-13 Score=148.60 Aligned_cols=112 Identities=17% Similarity=0.174 Sum_probs=95.6
Q ss_pred HHHHHHc--cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCcc
Q psy6094 177 WVKLLRS--MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAET 254 (455)
Q Consensus 177 l~~~i~~--~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~ 254 (455)
+...+.. ..+.++||||.+.++++.+++.|...+ +.+..|||.+.++++..+...+.+| +|+||||+|.|
T Consensus 417 l~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~g------i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgR 488 (790)
T PRK09200 417 VIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAG------IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGR 488 (790)
T ss_pred HHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC------CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhc
Confidence 4444433 467889999999999999999999874 7899999999999988888877766 79999999999
Q ss_pred CCCC---CCee-----EEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 255 SITI---DDIV-----YVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 255 gitI---~~V~-----~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
|+|| ++|. +||++.+ |-|...+.||+|||||.|. |.|+.+++
T Consensus 489 G~DI~l~~~V~~~GGL~VI~~d~------------------p~s~r~y~qr~GRtGR~G~~G~s~~~is 539 (790)
T PRK09200 489 GTDIKLGEGVHELGGLAVIGTER------------------MESRRVDLQLRGRSGRQGDPGSSQFFIS 539 (790)
T ss_pred CcCCCcccccccccCcEEEeccC------------------CCCHHHHHHhhccccCCCCCeeEEEEEc
Confidence 9999 7999 9999554 3455667899999999986 99999998
No 91
>KOG0950|consensus
Probab=99.46 E-value=3.6e-13 Score=144.47 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=92.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCC-----------------------C---------CCCeEEEeecCCCChhhHh
Q psy6094 185 LVVPILVFLPGWDTINSLHRSMCQSSFF-----------------------N---------SSRFQIIPLHSMLPTVSQK 232 (455)
Q Consensus 185 ~~g~iLVFlp~~~ei~~l~~~L~~~~~~-----------------------~---------~~~~~v~~lhs~l~~~~r~ 232 (455)
.+.++|||||++..++.++..+...... . .-.+-+..+|++++.++|+
T Consensus 459 e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~ 538 (1008)
T KOG0950|consen 459 EGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEERE 538 (1008)
T ss_pred cCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHH
Confidence 3445999999999999988666542100 0 0123467789999999999
Q ss_pred hhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC---CeE
Q psy6094 233 SIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK---RSE 309 (455)
Q Consensus 233 ~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~---G~c 309 (455)
.|...|++|..+|++||+.++.|++.|..+++|-.-+ ......++.+|.|+.|||||+|- |.+
T Consensus 539 ~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~--------------~g~~~l~~~~YkQM~GRAGR~gidT~Gds 604 (1008)
T KOG0950|consen 539 IIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY--------------VGREFLTRLEYKQMVGRAGRTGIDTLGDS 604 (1008)
T ss_pred HHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc--------------cccchhhhhhHHhhhhhhhhcccccCcce
Confidence 9999999999999999999999999999999995332 12345678899999999999864 889
Q ss_pred EecCCh
Q psy6094 310 TQQYPN 315 (455)
Q Consensus 310 ~~L~t~ 315 (455)
+-.+.+
T Consensus 605 iLI~k~ 610 (1008)
T KOG0950|consen 605 ILIIKS 610 (1008)
T ss_pred EEEeec
Confidence 988883
No 92
>KOG0329|consensus
Probab=99.45 E-value=2.9e-13 Score=125.73 Aligned_cols=221 Identities=12% Similarity=0.163 Sum_probs=141.2
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh--------------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL-------------------- 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~-------------------- 94 (455)
-|.+..+.|+....+-.-+.--....|.+.|+...-|-+++.+|..|-|||..+. ..+.
T Consensus 43 gfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrel 122 (387)
T KOG0329|consen 43 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTREL 122 (387)
T ss_pred chhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHH
Confidence 3566777888877777777766666777666655556679999999999994432 1111
Q ss_pred ---------------------------------h-----hcCCCCChHHHHHhc--cCCCCcCcc------hHHHHHH--
Q psy6094 95 ---------------------------------K-----RSETQQYPNDVLNML--KDPELEGVN------NDVIFSL-- 126 (455)
Q Consensus 95 ---------------------------------e-----~~~~vg~p~~ll~~l--~d~~L~~~~------~D~ll~~-- 126 (455)
| -...||+|++++... ..-.|.++. .|-+|..
T Consensus 123 afqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lD 202 (387)
T KOG0329|consen 123 AFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLD 202 (387)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHH
Confidence 1 122356788877655 444555555 5656543
Q ss_pred ----HHHHHHhcCCCCeEEEEccCCCCC-ccceEEeehhhhhhhhccCCC----------------CChHHHHHHHHccC
Q psy6094 127 ----LQHICTTQRPGAILVYCTYTFMGV-SPMKVFFCKNVLQRLMKGVGA----------------NSPKRWVKLLRSML 185 (455)
Q Consensus 127 ----lk~il~~~~~~~k~ilmSAT~~g~-~pv~~~~l~~~~~~~~~~~~~----------------~~~~~l~~~i~~~~ 185 (455)
+..+.+..+.+.|+..||||++.. -||-..|+.++.+.|+..... .+...+.+++....
T Consensus 203 MrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~Le 282 (387)
T KOG0329|consen 203 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLE 282 (387)
T ss_pred HHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 234443456788999999999777 788777877776665532211 11111112222122
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEE
Q psy6094 186 VVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVV 265 (455)
Q Consensus 186 ~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VI 265 (455)
-.+++||+.+... ..| .++ +||||+..||+||..|..|+
T Consensus 283 FNQVvIFvKsv~R----------------------------------l~f------~kr-~vat~lfgrgmdiervNi~~ 321 (387)
T KOG0329|consen 283 FNQVVIFVKSVQR----------------------------------LSF------QKR-LVATDLFGRGMDIERVNIVF 321 (387)
T ss_pred hcceeEeeehhhh----------------------------------hhh------hhh-hHHhhhhccccCcccceeee
Confidence 3344444443221 112 123 99999999999999999999
Q ss_pred eCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCCh
Q psy6094 266 DCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPN 315 (455)
Q Consensus 266 D~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~ 315 (455)
| ||.+.+ -.+|.||.|||||.|. |.++.+.+.
T Consensus 322 N--------Ydmp~~----------~DtYlHrv~rAgrfGtkglaitfvs~ 354 (387)
T KOG0329|consen 322 N--------YDMPED----------SDTYLHRVARAGRFGTKGLAITFVSD 354 (387)
T ss_pred c--------cCCCCC----------chHHHHHhhhhhccccccceeehhcc
Confidence 9 543333 3457799999999988 999998883
No 93
>KOG0951|consensus
Probab=99.44 E-value=7.6e-12 Score=136.79 Aligned_cols=197 Identities=12% Similarity=0.097 Sum_probs=133.6
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCC------------------C-------CC------CCeEEEeecCCCChhhHh
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSF------------------F-------NS------SRFQIIPLHSMLPTVSQK 232 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~------------------~-------~~------~~~~v~~lhs~l~~~~r~ 232 (455)
...+++|||+.+++|..+.++.+++... + .. -.+-+...|+||...+|.
T Consensus 544 agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~ 623 (1674)
T KOG0951|consen 544 AGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRE 623 (1674)
T ss_pred CCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHH
Confidence 4558999999999999999998884210 0 00 124577789999999999
Q ss_pred hhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCC-----CC
Q psy6094 233 SIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTL-----KR 307 (455)
Q Consensus 233 ~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~-----~G 307 (455)
.+..-|..|.++|+++|-..+.|++.|.-+++|- | ..+|||..|.. ...|.-...||.|||||.+ .|
T Consensus 624 ~~EdLf~~g~iqvlvstatlawgvnlpahtViik-g---tqvy~pekg~w----~elsp~dv~qmlgragrp~~D~~geg 695 (1674)
T KOG0951|consen 624 LVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIK-G---TQVYDPEKGRW----TELSPLDVMQMLGRAGRPQYDTCGEG 695 (1674)
T ss_pred HHHHHHhcCceeEEEeehhhhhhcCCCcceEEec-C---ccccCcccCcc----ccCCHHHHHHHHhhcCCCccCcCCce
Confidence 9999999999999999999999999999777773 2 35799999854 3567788999999999954 34
Q ss_pred eEEecCCh-----hhhccCCCCcccccC-------hHHHHH---------HHh------hhcCCCC--------------
Q psy6094 308 SETQQYPN-----DVLNMLKDPELEGVN-------NDVIFS---------LLQ------HICTTQR-------------- 346 (455)
Q Consensus 308 ~c~~L~t~-----~~~~~~~~PEi~r~~-------~~~~L~---------~l~------~~~~~P~-------------- 346 (455)
+...=+++ ..|++.-+-|-+..+ .++++- .+. ..+.-|.
T Consensus 696 iiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le 775 (1674)
T KOG0951|consen 696 IIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLE 775 (1674)
T ss_pred eeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHH
Confidence 44433332 122222222222211 333331 110 0111111
Q ss_pred ---hhhHHhHHhhhhhcccccCCCCCCcccCChHHHHHhhCCCCh
Q psy6094 347 ---PGAILVFLPGWDTINSLHRSMCQSSFFNSCLLYEFAMVDNKP 388 (455)
Q Consensus 347 ---~~~i~~al~~L~~lgald~~~~l~~~~~T~lG~~l~~lp~~p 388 (455)
.+-+..|...|+..|.+-.+..-.-+.+|.+|+.-+...+.-
T Consensus 776 ~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~ 820 (1674)
T KOG0951|consen 776 QRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITH 820 (1674)
T ss_pred HHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeec
Confidence 144677888888888886554333356799999999988876
No 94
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.43 E-value=4.4e-13 Score=145.01 Aligned_cols=120 Identities=15% Similarity=0.121 Sum_probs=101.8
Q ss_pred HHHHHHc--cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCcc
Q psy6094 177 WVKLLRS--MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAET 254 (455)
Q Consensus 177 l~~~i~~--~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~ 254 (455)
+...+.. ..+..+|||++++..++.+++.|...+ +.+..+||++++.+|.+++..|++|...|+||||++++
T Consensus 431 Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~g------i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 431 LLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELG------IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred HHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhc------cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 4444443 567789999999999999999999864 78899999999999999999999999999999999999
Q ss_pred CCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCCh
Q psy6094 255 SITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPN 315 (455)
Q Consensus 255 gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~ 315 (455)
|+|+|++++||.++- .. ...|-|..++.||+|||||...|.|+.+++.
T Consensus 505 GfDiP~v~lVvi~Da--------di-----fG~p~~~~~~iqriGRagR~~~G~vi~~~~~ 552 (655)
T TIGR00631 505 GLDLPEVSLVAILDA--------DK-----EGFLRSERSLIQTIGRAARNVNGKVIMYADK 552 (655)
T ss_pred CeeeCCCcEEEEeCc--------cc-----ccCCCCHHHHHHHhcCCCCCCCCEEEEEEcC
Confidence 999999999997432 11 0134567789999999999988999988873
No 95
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.42 E-value=6.9e-13 Score=143.31 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=90.5
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCC----
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITID---- 259 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~---- 259 (455)
..+.++||||++...++.+.+.|...+ +.+..|||.+.+.++..+...+.+| +|+||||+|.||+||+
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~~g------i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~ 493 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLREG------IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKG 493 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHHCC------CCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCcc
Confidence 567889999999999999999999875 7788999999999998888888777 7999999999999999
Q ss_pred -----CeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 260 -----DIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 260 -----~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
++.+||+ |++++. +. ..||+|||||.|. |.|+.+++
T Consensus 494 v~~~GGL~vIit--------~~~ps~----------ri-d~qr~GRtGRqG~~G~s~~~is 535 (762)
T TIGR03714 494 VAELGGLAVIGT--------ERMENS----------RV-DLQLRGRSGRQGDPGSSQFFVS 535 (762)
T ss_pred ccccCCeEEEEe--------cCCCCc----------HH-HHHhhhcccCCCCceeEEEEEc
Confidence 9999998 544432 22 2699999999986 99999998
No 96
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.42 E-value=5.4e-13 Score=114.56 Aligned_cols=111 Identities=20% Similarity=0.286 Sum_probs=95.3
Q ss_pred HHHHHHcc--CCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCcc
Q psy6094 177 WVKLLRSM--LVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAET 254 (455)
Q Consensus 177 l~~~i~~~--~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~ 254 (455)
+...+... .++++|||+++...++.+++.|... ...+..+||+++..++..+++.|.+|..+|+++|+.++.
T Consensus 17 i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 17 LLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKP------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhc------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 44444432 5789999999999999999999874 367999999999999999999999999999999999999
Q ss_pred CCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEe
Q psy6094 255 SITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQ 311 (455)
Q Consensus 255 gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~ 311 (455)
|+|+|++++||-.+. |.+...+.|+.||+||.+. |.|+.
T Consensus 91 G~d~~~~~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 91 GIDLPNVSVVINYDL------------------PWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred CcChhhCCEEEEeCC------------------CCCHHHheecccccccCCCCceEEe
Confidence 999999999996443 5667788899999999985 88775
No 97
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.42 E-value=6.2e-13 Score=144.56 Aligned_cols=119 Identities=17% Similarity=0.129 Sum_probs=101.9
Q ss_pred HHHHHHc--cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCcc
Q psy6094 177 WVKLLRS--MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAET 254 (455)
Q Consensus 177 l~~~i~~--~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~ 254 (455)
+...+.. ..+..+|||+++...++.+++.|...+ +.+..+||++++.+|..++..|++|...|+|||+++++
T Consensus 435 L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~g------i~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~r 508 (652)
T PRK05298 435 LLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELG------IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (652)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcc------eeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhC
Confidence 4444443 457789999999999999999999864 88999999999999999999999999999999999999
Q ss_pred CCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCC
Q psy6094 255 SITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYP 314 (455)
Q Consensus 255 gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t 314 (455)
|+++|++++||.++... .| .|.+..++.||+||+||...|.|+.+.+
T Consensus 509 Gfdlp~v~lVii~d~ei-------fG------~~~~~~~yiqr~GR~gR~~~G~~i~~~~ 555 (652)
T PRK05298 509 GLDIPEVSLVAILDADK-------EG------FLRSERSLIQTIGRAARNVNGKVILYAD 555 (652)
T ss_pred CccccCCcEEEEeCCcc-------cc------cCCCHHHHHHHhccccCCCCCEEEEEec
Confidence 99999999999844321 11 2457788999999999987899999988
No 98
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.41 E-value=9.4e-13 Score=139.01 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeecCCCChhhH--hhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEE--eCCCCcccc
Q psy6094 199 INSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQ--KSIFNTPPEGVRKIVLATNIAETSITIDDIVYVV--DCGKTKMSN 274 (455)
Q Consensus 199 i~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r--~~v~~~~~~g~~kVivaTniae~gitI~~V~~VI--D~g~~k~~~ 274 (455)
++++.+.|.+.. ++..+..+|++++..++ .++++.|++|+.+|+|+|+++++|+|+|+|+.|+ |
T Consensus 271 te~~~e~l~~~f----p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~-------- 338 (505)
T TIGR00595 271 TEQVEEELAKLF----PGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD-------- 338 (505)
T ss_pred HHHHHHHHHhhC----CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc--------
Confidence 566667776642 24789999999988766 7899999999999999999999999999999885 5
Q ss_pred cccCCCcccccccccchhhHHhhhcccCCCCC-CeEE
Q psy6094 275 FDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSET 310 (455)
Q Consensus 275 yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~ 310 (455)
+|...+...+...--.-..+.|++|||||.+. |.++
T Consensus 339 aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vi 375 (505)
T TIGR00595 339 ADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVI 375 (505)
T ss_pred CcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEE
Confidence 33322222222222233567899999999665 8887
No 99
>KOG0353|consensus
Probab=99.40 E-value=2.1e-12 Score=125.79 Aligned_cols=91 Identities=12% Similarity=0.135 Sum_probs=79.3
Q ss_pred HHHHHHc-cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccC
Q psy6094 177 WVKLLRS-MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETS 255 (455)
Q Consensus 177 l~~~i~~-~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~g 255 (455)
+...|.. -.+...+|+|-++.+++.++..|+.++ +..-.+|+.|.++++..+-+.+-.|...|||||-....|
T Consensus 307 i~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~g------i~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmg 380 (695)
T KOG0353|consen 307 IAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHG------IHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMG 380 (695)
T ss_pred HHHHhccccCCCcceEEEeccccHHHHHHHHHhcC------ccccccccccCccccccccccccccceEEEEEEeeeccc
Confidence 3344433 345568999999999999999999886 788899999999999999999999999999999999999
Q ss_pred CCCCCeeEEEeCCCCccc
Q psy6094 256 ITIDDIVYVVDCGKTKMS 273 (455)
Q Consensus 256 itI~~V~~VID~g~~k~~ 273 (455)
||-|||++||+-.++|..
T Consensus 381 idkpdvrfvihhsl~ksi 398 (695)
T KOG0353|consen 381 IDKPDVRFVIHHSLPKSI 398 (695)
T ss_pred CCCCCeeEEEecccchhH
Confidence 999999999998887743
No 100
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.37 E-value=4.8e-13 Score=105.11 Aligned_cols=72 Identities=24% Similarity=0.276 Sum_probs=66.2
Q ss_pred CeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHH
Q psy6094 216 RFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAK 295 (455)
Q Consensus 216 ~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~ 295 (455)
++.+..+||++++++|..+++.|..|..+||+||++++.|||+|++++||.++. +-|..++.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~------------------~~~~~~~~ 68 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDP------------------PWSPEEYI 68 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSS------------------ESSHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccccccc------------------CCCHHHHH
Confidence 488999999999999999999999999999999999999999999999998554 56778899
Q ss_pred hhhcccCCCC
Q psy6094 296 QRRGRAGRTL 305 (455)
Q Consensus 296 QR~GRaGR~~ 305 (455)
||.||+||.|
T Consensus 69 Q~~GR~~R~g 78 (78)
T PF00271_consen 69 QRIGRAGRIG 78 (78)
T ss_dssp HHHTTSSTTT
T ss_pred HHhhcCCCCC
Confidence 9999999974
No 101
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.32 E-value=1.3e-11 Score=136.12 Aligned_cols=104 Identities=19% Similarity=0.181 Sum_probs=85.2
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCC----CCCceEEEEeCCCCccCCCCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTP----PEGVRKIVLATNIAETSITID 259 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~----~~g~~kVivaTniae~gitI~ 259 (455)
..++.+||-++|.+.+.++++.|+..+ . .++.+||.+...+|.+..+.. ..+.-.|+|||-|.|.|+||+
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~~-----~-~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid 511 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEKG-----P-KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID 511 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhcC-----C-CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc
Confidence 678899999999999999999999875 2 799999999999999876632 345678999999999999987
Q ss_pred CeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCC--C-CeEEecCC
Q psy6094 260 DIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTL--K-RSETQQYP 314 (455)
Q Consensus 260 ~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~--~-G~c~~L~t 314 (455)
.+.+| +...+-.+..||+||.+|.| . |..|..-.
T Consensus 512 -fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 512 -FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred -cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCceeEeec
Confidence 56666 34566678889999999988 3 66665544
No 102
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.30 E-value=9.6e-12 Score=133.82 Aligned_cols=105 Identities=19% Similarity=0.146 Sum_probs=92.5
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCC---
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDD--- 260 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~--- 260 (455)
..+.++||||++..+.+.+.+.|...+ +....||+. +.+|...+..+..+.-.|+||||+|.||+||+.
T Consensus 403 ~~grpvLV~t~si~~se~ls~~L~~~g------i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V 474 (745)
T TIGR00963 403 AKGQPVLVGTTSVEKSELLSNLLKERG------IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEV 474 (745)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHcC------CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccch
Confidence 678899999999999999999999875 677889998 778888888898899999999999999999998
Q ss_pred ----eeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 261 ----IVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 261 ----V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
..|||++.+ |-|+..+.||+||+||.|. |.+..+.+
T Consensus 475 ~~~GGl~VI~t~~------------------p~s~ri~~q~~GRtGRqG~~G~s~~~ls 515 (745)
T TIGR00963 475 KELGGLYVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFFLS 515 (745)
T ss_pred hhcCCcEEEecCC------------------CCcHHHHHHHhccccCCCCCcceEEEEe
Confidence 449998554 4566678899999999987 99988888
No 103
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.29 E-value=1e-11 Score=134.72 Aligned_cols=105 Identities=21% Similarity=0.206 Sum_probs=92.5
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCC---CC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITI---DD 260 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI---~~ 260 (455)
..+.++||||.+....+.+++.|.+.+ +....||+...+.++..+.....+|. |+||||+|.||+|| ++
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~g------i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~ 509 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEAG------IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPG 509 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHCC------CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcc
Confidence 578899999999999999999999875 67889999999988888888888776 99999999999999 59
Q ss_pred ee-----EEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 261 IV-----YVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 261 V~-----~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
|. +||++.+ |-|+-.+.||.|||||.|. |.+..+++
T Consensus 510 V~~~GGLhVI~te~------------------pes~ri~~Ql~GRtGRqG~~G~s~~~~s 551 (796)
T PRK12906 510 VKELGGLAVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFYLS 551 (796)
T ss_pred hhhhCCcEEEeeec------------------CCcHHHHHHHhhhhccCCCCcceEEEEe
Confidence 99 9998655 4556667899999999987 99988888
No 104
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.25 E-value=8.5e-12 Score=97.93 Aligned_cols=80 Identities=26% Similarity=0.302 Sum_probs=70.1
Q ss_pred HHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCc
Q psy6094 202 LHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNI 281 (455)
Q Consensus 202 l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~ 281 (455)
+++.|+.. ++.+..+||++++++|..+++.|.+|..+|+++|++++.|+|++++++||..+.
T Consensus 3 l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~------------ 64 (82)
T smart00490 3 LAELLKEL------GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL------------ 64 (82)
T ss_pred HHHHHHHC------CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC------------
Confidence 45556554 378999999999999999999999999999999999999999999999998554
Q ss_pred ccccccccchhhHHhhhcccCCCC
Q psy6094 282 ATLKPEWISLANAKQRRGRAGRTL 305 (455)
Q Consensus 282 ~~l~~~~iSka~~~QR~GRaGR~~ 305 (455)
|.+.+.+.|+.||+||.+
T Consensus 65 ------~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 65 ------PWSPASYIQRIGRAGRAG 82 (82)
T ss_pred ------CCCHHHHHHhhcccccCC
Confidence 567888999999999964
No 105
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.23 E-value=3e-11 Score=134.70 Aligned_cols=113 Identities=14% Similarity=0.123 Sum_probs=92.9
Q ss_pred HHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCC--CceEEEEeCCCCccCC
Q psy6094 179 KLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPE--GVRKIVLATNIAETSI 256 (455)
Q Consensus 179 ~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~--g~~kVivaTniae~gi 256 (455)
.++....+.++||||.++..+..+.+.|+... ++.+..+||++++.+|.++++.|.. |..+|+|||+++++|+
T Consensus 486 ~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~-----Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGl 560 (956)
T PRK04914 486 DFLKSHRSEKVLVICAKAATALQLEQALRERE-----GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGR 560 (956)
T ss_pred HHHHhcCCCeEEEEeCcHHHHHHHHHHHhhcc-----CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCC
Confidence 33333457799999999999999999996432 3889999999999999999999986 4689999999999999
Q ss_pred CCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-C--eEEecCC
Q psy6094 257 TIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-R--SETQQYP 314 (455)
Q Consensus 257 tI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G--~c~~L~t 314 (455)
|++.+++||+++++ -+-..+.||.||+||.|. | ..|.++.
T Consensus 561 Nlq~a~~VInfDlP------------------~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~ 603 (956)
T PRK04914 561 NFQFASHLVLFDLP------------------FNPDLLEQRIGRLDRIGQKHDIQIHVPYL 603 (956)
T ss_pred CcccccEEEEecCC------------------CCHHHHHHHhcccccCCCCceEEEEEccC
Confidence 99999999994443 344567899999999776 4 4556665
No 106
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.22 E-value=2.4e-11 Score=100.90 Aligned_cols=71 Identities=13% Similarity=0.076 Sum_probs=51.0
Q ss_pred hHHhhhhhcccccCCCCCCcccCChHHHHHhhCCCCh---------------hHHHHHHHhhc----CcCCcChHHHHH-
Q psy6094 352 VFLPGWDTINSLHRSMCQSSFFNSCLLYEFAMVDNKP---------------KEIITVRDCLS----FECKPSTAKIIK- 411 (455)
Q Consensus 352 ~al~~L~~lgald~~~~l~~~~~T~lG~~l~~lp~~p---------------~~~l~iaa~ls----f~~p~~~~~~~~- 411 (455)
+|++.|..+||||.++++ |++|+.|+.||++| +++++|||+|| |..|..+++..+
T Consensus 1 ~A~~~L~~Lgald~~~~l-----T~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~ 75 (102)
T PF04408_consen 1 KALELLKSLGALDENGNL-----TPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQ 75 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B------HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH
T ss_pred CHHHHHHHCCCCCCCCCc-----CHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHH
Confidence 478999999999999999 99999999999999 89999999999 666655444332
Q ss_pred -HHHhhh---------C-CCCcHHHHH
Q psy6094 412 -ELRARL---------D-MLLAHKLSH 427 (455)
Q Consensus 412 -~~~~~~---------~-~~sD~~~~~ 427 (455)
..+.+| . ..|||++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 76 DNAKKKFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp --HHHTT----------BTTBHHHHHH
T ss_pred HHHHHHhhhhhcccccCCCCCCHHhcC
Confidence 244444 5 889999986
No 107
>KOG0948|consensus
Probab=99.21 E-value=1.9e-11 Score=127.97 Aligned_cols=129 Identities=24% Similarity=0.227 Sum_probs=96.1
Q ss_pred HHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCC-------------------C-----CC---------CeEEEeec
Q psy6094 177 WVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFF-------------------N-----SS---------RFQIIPLH 223 (455)
Q Consensus 177 l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~-------------------~-----~~---------~~~v~~lh 223 (455)
++..+....-.+++||.=+++||+.++-.+.+.-.. + .+ .--+...|
T Consensus 374 iVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHH 453 (1041)
T KOG0948|consen 374 IVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHH 453 (1041)
T ss_pred HHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhcccccc
Confidence 334444466778999999999999999777654211 0 00 01255678
Q ss_pred CCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCC
Q psy6094 224 SMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303 (455)
Q Consensus 224 s~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR 303 (455)
|||-+--...|.=-|.+|-.||++||-..+.|++.|.-++|.- ..+.||-.. -.|||-.+|+|.+|||||
T Consensus 454 sGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT----~~rKfDG~~------fRwissGEYIQMSGRAGR 523 (1041)
T KOG0948|consen 454 SGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT----AVRKFDGKK------FRWISSGEYIQMSGRAGR 523 (1041)
T ss_pred ccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe----eccccCCcc------eeeecccceEEecccccc
Confidence 9998866655544578999999999999999999998777763 233455433 379999999999999999
Q ss_pred CCC---CeEEecCCh
Q psy6094 304 TLK---RSETQQYPN 315 (455)
Q Consensus 304 ~~~---G~c~~L~t~ 315 (455)
.|- |+|+.+.++
T Consensus 524 RG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 524 RGIDDRGIVILMIDE 538 (1041)
T ss_pred cCCCCCceEEEEecC
Confidence 774 999999984
No 108
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.16 E-value=5.8e-10 Score=123.33 Aligned_cols=128 Identities=22% Similarity=0.226 Sum_probs=95.2
Q ss_pred HHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCC--------------------C-CC-Ce-------------EEEe
Q psy6094 177 WVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFF--------------------N-SS-RF-------------QIIP 221 (455)
Q Consensus 177 l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~--------------------~-~~-~~-------------~v~~ 221 (455)
++.++.....-++++|+=++.+|+..+..+...... . .+ .+ -+..
T Consensus 370 iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiav 449 (1041)
T COG4581 370 IVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAV 449 (1041)
T ss_pred HHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhh
Confidence 444555466678999999999999988777632100 0 00 01 1336
Q ss_pred ecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhccc
Q psy6094 222 LHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRA 301 (455)
Q Consensus 222 lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRa 301 (455)
.|++|-+..+..+..-|..|-.||++||.+.+-|++.|.-++|+ +++.| +|- -.-.|.+-.+|.|.+|||
T Consensus 450 HH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~K---~dG------~~~r~L~~gEy~QmsGRA 519 (1041)
T COG4581 450 HHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLSK---FDG------NGHRWLSPGEYTQMSGRA 519 (1041)
T ss_pred hccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeEE---ecC------CceeecChhHHHHhhhhh
Confidence 78999999999998889999999999999999999999766665 44443 331 123699999999999999
Q ss_pred CCCCC---CeEEecCC
Q psy6094 302 GRTLK---RSETQQYP 314 (455)
Q Consensus 302 GR~~~---G~c~~L~t 314 (455)
||.|- |..+..-+
T Consensus 520 GRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 520 GRRGLDVLGTVIVIEP 535 (1041)
T ss_pred ccccccccceEEEecC
Confidence 99763 88888744
No 109
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.15 E-value=9.1e-11 Score=128.43 Aligned_cols=112 Identities=18% Similarity=0.151 Sum_probs=91.5
Q ss_pred HHHHHHc--cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCcc
Q psy6094 177 WVKLLRS--MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAET 254 (455)
Q Consensus 177 l~~~i~~--~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~ 254 (455)
+...+.. ..+.++|||+++....+.+.+.|...+ +....||+ .+.+|...+..+..+.-.|+||||+|.|
T Consensus 587 li~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~g------I~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 587 IVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKR------IAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcC------CCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 4445532 568899999999999999999999875 66778886 5778888888888889999999999999
Q ss_pred CCCCC---CeeE-----EEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 255 SITID---DIVY-----VVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 255 gitI~---~V~~-----VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
|+||+ +|.. ||++.+ +-|+-.+.||+|||||.|. |.+..+++
T Consensus 659 GtDIkl~~~V~~vGGL~VIgter------------------hes~Rid~Ql~GRtGRqGdpGsS~ffvS 709 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSER------------------HESRRIDRQLRGRAGRQGDPGESVFYVS 709 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCC------------------CchHHHHHHHhhhhhcCCCCcceEEEec
Confidence 99999 5543 355333 4455667899999999987 99999999
No 110
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.13 E-value=6.9e-10 Score=115.72 Aligned_cols=96 Identities=15% Similarity=0.138 Sum_probs=83.6
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEE
Q psy6094 185 LVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYV 264 (455)
Q Consensus 185 ~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~V 264 (455)
.+..++||+........++..+...+ . +..+.|..+..+|..+++.|+.|..++|+++.|+.-|+|+|++..+
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~------~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~ 354 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPG------I-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVL 354 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCC------c-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEE
Confidence 46799999999999999999888754 3 7788999999999999999999999999999999999999999999
Q ss_pred EeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCC
Q psy6094 265 VDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTL 305 (455)
Q Consensus 265 ID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~ 305 (455)
|- ....-|+..+.||.||.=|..
T Consensus 355 i~------------------~~~t~S~~~~~Q~lGR~LR~~ 377 (442)
T COG1061 355 II------------------LRPTGSRRLFIQRLGRGLRPA 377 (442)
T ss_pred EE------------------eCCCCcHHHHHHHhhhhccCC
Confidence 93 112357788999999998843
No 111
>KOG0947|consensus
Probab=99.08 E-value=9.6e-10 Score=118.05 Aligned_cols=128 Identities=16% Similarity=0.160 Sum_probs=94.1
Q ss_pred HHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCC--------------------CCC-------------eEEEeec
Q psy6094 177 WVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFN--------------------SSR-------------FQIIPLH 223 (455)
Q Consensus 177 l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~--------------------~~~-------------~~v~~lh 223 (455)
++.|+....--+++||+=+++.|++.++.|......+ .++ --+..+|
T Consensus 558 lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH 637 (1248)
T KOG0947|consen 558 LINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHH 637 (1248)
T ss_pred HHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhc
Confidence 4455555667789999999999999999997643110 011 1266789
Q ss_pred CCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCC
Q psy6094 224 SMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303 (455)
Q Consensus 224 s~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR 303 (455)
|++-+--..-|..-|..|-.||++||-..+.||+.|.-++|+|+=.. .|-.. -.-..-.+|.|.+|||||
T Consensus 638 ~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~K----hDG~e------fR~L~PGEytQMAGRAGR 707 (1248)
T KOG0947|consen 638 GGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRK----HDGNE------FRELLPGEYTQMAGRAGR 707 (1248)
T ss_pred ccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhh----ccCcc------eeecCChhHHhhhccccc
Confidence 99988777777667889999999999999999999998888874332 22111 123455789999999999
Q ss_pred CCC---CeEEecCC
Q psy6094 304 TLK---RSETQQYP 314 (455)
Q Consensus 304 ~~~---G~c~~L~t 314 (455)
.|- |.++-+-.
T Consensus 708 RGlD~tGTVii~~~ 721 (1248)
T KOG0947|consen 708 RGLDETGTVIIMCK 721 (1248)
T ss_pred cccCcCceEEEEec
Confidence 763 87776654
No 112
>KOG4150|consensus
Probab=99.02 E-value=7.7e-09 Score=105.80 Aligned_cols=105 Identities=22% Similarity=0.111 Sum_probs=83.9
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCC--eEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCe
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSR--FQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDI 261 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~--~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V 261 (455)
..+-..+.|||.++-++-+....+.-..-.+.. -.+..+.|+...++|+++.+..--|+.+-|+|||.+|.||||.++
T Consensus 523 ~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~L 602 (1034)
T KOG4150|consen 523 QHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHL 602 (1034)
T ss_pred HcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccc
Confidence 457789999999988877654443311000111 135668899999999999998888999999999999999999999
Q ss_pred eEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC
Q psy6094 262 VYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK 306 (455)
Q Consensus 262 ~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~ 306 (455)
+.|+.+|+ |.|-++..|..|||||...
T Consensus 603 DAVl~~GF------------------P~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 603 DAVLHLGF------------------PGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred eeEEEccC------------------chhHHHHHHHhccccccCC
Confidence 99999997 5788999999999998654
No 113
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=98.99 E-value=9.9e-10 Score=89.23 Aligned_cols=70 Identities=20% Similarity=0.100 Sum_probs=57.7
Q ss_pred hHHhhhhhcccccCCCCCCcccCChHHHHHhhCCCCh----------------hHHHHHHHhhc----CcCCcChHHHHH
Q psy6094 352 VFLPGWDTINSLHRSMCQSSFFNSCLLYEFAMVDNKP----------------KEIITVRDCLS----FECKPSTAKIIK 411 (455)
Q Consensus 352 ~al~~L~~lgald~~~~l~~~~~T~lG~~l~~lp~~p----------------~~~l~iaa~ls----f~~p~~~~~~~~ 411 (455)
+|++.|..+||||.++++ |++|+.|+.||++| +++++|+|+++ |..| ....++.
T Consensus 1 ~A~~~L~~LgAld~~~~l-----T~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~ 74 (92)
T smart00847 1 AALELLYELGALDDDGRL-----TPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEAD 74 (92)
T ss_pred CHHHHHHHCCCcCCCCCc-----CHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHH
Confidence 478899999999999999 99999999999999 56778888888 3333 4556677
Q ss_pred HHHhhhC-C-CCcHHHHH
Q psy6094 412 ELRARLD-M-LLAHKLSH 427 (455)
Q Consensus 412 ~~~~~~~-~-~sD~~~~~ 427 (455)
..+..|. . .|||++++
T Consensus 75 ~~~~~~~~~~~~D~~~~l 92 (92)
T smart00847 75 AARRRFASGRESDHLTLL 92 (92)
T ss_pred HHHHHccCCCCCChhhhC
Confidence 7788888 6 89999863
No 114
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.82 E-value=1.8e-08 Score=110.44 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=63.5
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITID 259 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~ 259 (455)
..+.++|||+.+.+..+.+++.|...+ +....||+.+.+.++..+.+.+.+|. |.||||+|.||+||.
T Consensus 442 ~~g~PVLVgt~Sie~sE~ls~~L~~~g------i~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~ 509 (896)
T PRK13104 442 VRKQPVLVGTVSIEASEFLSQLLKKEN------IKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIV 509 (896)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcC------CCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCccee
Confidence 678899999999999999999999875 78899999999999999999999994 999999999999985
No 115
>KOG0953|consensus
Probab=98.82 E-value=1.2e-07 Score=97.32 Aligned_cols=147 Identities=17% Similarity=0.234 Sum_probs=101.5
Q ss_pred HHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHh---hhhcCCCCCceEEEEeCCCCccCCC
Q psy6094 181 LRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQK---SIFNTPPEGVRKIVLATNIAETSIT 257 (455)
Q Consensus 181 i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~---~v~~~~~~g~~kVivaTniae~git 257 (455)
+..-.+|+.+|-+ ++++|-.+...+.+.+ +..+..+||+||++.|. ..|. -+++..+|+||||....|++
T Consensus 352 l~nlk~GDCvV~F-Skk~I~~~k~kIE~~g-----~~k~aVIYGsLPPeTr~aQA~~FN-d~~~e~dvlVAsDAIGMGLN 424 (700)
T KOG0953|consen 352 LSNLKPGDCVVAF-SKKDIFTVKKKIEKAG-----NHKCAVIYGSLPPETRLAQAALFN-DPSNECDVLVASDAIGMGLN 424 (700)
T ss_pred hccCCCCCeEEEe-ehhhHHHHHHHHHHhc-----CcceEEEecCCCCchhHHHHHHhC-CCCCccceEEeecccccccc
Confidence 3335678777755 4788999999999876 46688899999998544 4444 34588999999999999999
Q ss_pred CCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC----CeEEecCChhh--hc---cCCCCcccc
Q psy6094 258 IDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK----RSETQQYPNDV--LN---MLKDPELEG 328 (455)
Q Consensus 258 I~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~----G~c~~L~t~~~--~~---~~~~PEi~r 328 (455)
+. |+-||=+.+.| |+ .-.+.+++.+++.|=+|||||.+. |..-.|+.++- +. ..++-.|..
T Consensus 425 L~-IrRiiF~sl~K---ys------g~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eDL~~L~~~l~~p~epi~~ 494 (700)
T KOG0953|consen 425 LN-IRRIIFYSLIK---YS------GRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSEDLKLLKRILKRPVEPIKN 494 (700)
T ss_pred cc-eeEEEEeeccc---CC------cccceeccHHHHHHHhhcccccccCCcCceEEEeeHhhHHHHHHHHhCCchHHHh
Confidence 74 66666433332 32 235678999999999999999663 88888887541 11 223333433
Q ss_pred cC----hHHHHHHHhhhcCC
Q psy6094 329 VN----NDVIFSLLQHICTT 344 (455)
Q Consensus 329 ~~----~~~~L~~l~~~~~~ 344 (455)
.. .+.|-.|..++++.
T Consensus 495 agl~pt~eqie~fa~~~Pd~ 514 (700)
T KOG0953|consen 495 AGLWPTDEQIELFAYHLPDA 514 (700)
T ss_pred ccCCccHHHHHHHHHhCCCc
Confidence 33 55555666666543
No 116
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.76 E-value=3.5e-08 Score=107.95 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=63.1
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITID 259 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~ 259 (455)
..+.++|||+.+....+.+++.|...+ +....||+..++.++..+.+.+.+|. |+||||+|.||+||.
T Consensus 447 ~~GrpVLV~t~sv~~se~ls~~L~~~g------i~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIk 514 (908)
T PRK13107 447 ERGQPVLVGTVSIEQSELLARLMVKEK------IPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIV 514 (908)
T ss_pred HcCCCEEEEeCcHHHHHHHHHHHHHCC------CCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCccee
Confidence 568899999999999999999999875 77888999999999999999999998 999999999999985
No 117
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.73 E-value=3.6e-07 Score=101.22 Aligned_cols=98 Identities=19% Similarity=0.148 Sum_probs=70.1
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcC--------------------------CCCCc
Q psy6094 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNT--------------------------PPEGV 242 (455)
Q Consensus 189 iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~--------------------------~~~g~ 242 (455)
.||=+.+.+.+-.+++.|..........+.++.+||.-+...|..+.+. ...+.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 5677788888888888777654333446789999999988776654322 11246
Q ss_pred eEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCC
Q psy6094 243 RKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKR 307 (455)
Q Consensus 243 ~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G 307 (455)
..|||||.|.|.|+||+ .+.+| +.+.+-.+..||+||..|.+..
T Consensus 839 ~~i~v~Tqv~E~g~D~d-fd~~~--------------------~~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDHD-YDWAI--------------------ADPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred CeEEEEeeeEEEEeccc-CCeee--------------------eccCcHHHHHHHhhcccccccC
Confidence 78999999999999986 33333 2345666788999999997764
No 118
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.73 E-value=3.4e-08 Score=108.02 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=64.7
Q ss_pred HHHHHHc--cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCcc
Q psy6094 177 WVKLLRS--MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAET 254 (455)
Q Consensus 177 l~~~i~~--~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~ 254 (455)
+...+.. ..+.++||||.+..+.+.+++.|...+ +....|||. +.+|...+..+..+.-.|+||||+|.|
T Consensus 419 I~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~g------i~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGR 490 (830)
T PRK12904 419 VVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAG------IPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGR 490 (830)
T ss_pred HHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC------CceEeccCc--hHHHHHHHHHhcCCCceEEEecccccC
Confidence 4444433 567799999999999999999999875 778889995 778888888899999999999999999
Q ss_pred CCCCC
Q psy6094 255 SITID 259 (455)
Q Consensus 255 gitI~ 259 (455)
|+||+
T Consensus 491 GtDI~ 495 (830)
T PRK12904 491 GTDIK 495 (830)
T ss_pred CcCcc
Confidence 99986
No 119
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.49 E-value=4.7e-06 Score=91.23 Aligned_cols=123 Identities=17% Similarity=0.171 Sum_probs=88.8
Q ss_pred CCCeEEEEccCCCCC------------ccc--eEEeehhhhhhhhccCCCCChHHHHHHHHccCCCCEEEEcCC---HHH
Q psy6094 136 PGAILVYCTYTFMGV------------SPM--KVFFCKNVLQRLMKGVGANSPKRWVKLLRSMLVVPILVFLPG---WDT 198 (455)
Q Consensus 136 ~~~k~ilmSAT~~g~------------~pv--~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~~g~iLVFlp~---~~e 198 (455)
+.-.+|++|||..-+ |.| ...++.++.+.|... ........++. .-+...|||+|. .+.
T Consensus 275 k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~~~~LRNIvD~y~~~---~~~e~~~elvk-~lG~GgLIfV~~d~G~e~ 350 (1187)
T COG1110 275 KLGILVVSSATGKPRGSRLKLFRELLGFEVGSGGEGLRNIVDIYVES---ESLEKVVELVK-KLGDGGLIFVPIDYGREK 350 (1187)
T ss_pred CCceEEEeeccCCCCCchHHHHHHHhCCccCccchhhhheeeeeccC---ccHHHHHHHHH-HhCCCeEEEEEcHHhHHH
Confidence 456799999998111 111 223455555555443 22223444554 345578999999 889
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEe----CCCCccCCCCC-CeeEEEeCCCCccc
Q psy6094 199 INSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA----TNIAETSITID-DIVYVVDCGKTKMS 273 (455)
Q Consensus 199 i~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kViva----Tniae~gitI~-~V~~VID~g~~k~~ 273 (455)
++++++.|+.++ +.+...|+. ..+.++.|..|...|+|. .+++-||||.| -|+|+|=.|.||.+
T Consensus 351 aeel~e~Lr~~G------i~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 351 AEELAEYLRSHG------INAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred HHHHHHHHHhcC------ceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 999999999875 888888873 257888899999999986 57899999998 57899999999754
No 120
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.39 E-value=2.3e-06 Score=97.96 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=85.1
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCC---CCCCeEEEeecCCCChhhHhhhhcCCCCCce-EEEEeCCCCccCCCCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFF---NSSRFQIIPLHSMLPTVSQKSIFNTPPEGVR-KIVLATNIAETSITID 259 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~---~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~-kVivaTniae~gitI~ 259 (455)
..++.+||||.+.+.++.+++.|...... ......+..+||+.+. +..+++.|+++.. +|+|+++++.||+|+|
T Consensus 696 ~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~--~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP 773 (1123)
T PRK11448 696 TGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDK--PDQLIRRFKNERLPNIVVTVDLLTTGIDVP 773 (1123)
T ss_pred cCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccc--hHHHHHHHhCCCCCeEEEEecccccCCCcc
Confidence 34589999999999999999888764210 0112345668888754 5678888988775 7999999999999999
Q ss_pred CeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC--C-eEEecCC
Q psy6094 260 DIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK--R-SETQQYP 314 (455)
Q Consensus 260 ~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~--G-~c~~L~t 314 (455)
+|..||- ++ ..-|+..+.|+.||+.|..+ | .+|.+|.
T Consensus 774 ~v~~vVf--------~r----------pvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 774 SICNLVF--------LR----------RVRSRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred cccEEEE--------ec----------CCCCHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 9999995 21 23577788999999999877 3 5667777
No 121
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.37 E-value=2.9e-06 Score=87.17 Aligned_cols=120 Identities=16% Similarity=0.118 Sum_probs=99.3
Q ss_pred HHHHHHHc--cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCc
Q psy6094 176 RWVKLLRS--MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAE 253 (455)
Q Consensus 176 ~l~~~i~~--~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae 253 (455)
++..-|.. ..+..+||-.-|++-.+.|.+.|...+ +++-.+||++..-+|.++++..+.|...|+|--|.+-
T Consensus 434 DL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~g------ikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLR 507 (663)
T COG0556 434 DLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELG------IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR 507 (663)
T ss_pred HHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcC------ceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhh
Confidence 35554443 567899999999999999999999885 8999999999999999999999999999999999999
Q ss_pred cCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCC
Q psy6094 254 TSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYP 314 (455)
Q Consensus 254 ~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t 314 (455)
-|+|||.|..|.-.+--|+ | ..-|-.+..|=.|||.|.-.|.++.-..
T Consensus 508 EGLDiPEVsLVAIlDADKe-------G------FLRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 508 EGLDLPEVSLVAILDADKE-------G------FLRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred ccCCCcceeEEEEeecCcc-------c------cccccchHHHHHHHHhhccCCeEEEEch
Confidence 9999999999874222222 1 2235567889999999999998765433
No 122
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.32 E-value=9.4e-06 Score=75.33 Aligned_cols=141 Identities=11% Similarity=0.071 Sum_probs=95.5
Q ss_pred HHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchhhhhhhhcCCCCChHHHHHhccCCCCcC
Q psy6094 38 IRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLDFITLKRSETQQYPNDVLNMLKDPELEG 117 (455)
Q Consensus 38 ~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp~ll~e~~~~vg~p~~ll~~l~d~~L~~ 117 (455)
++...++...+.+...+....+.+|.++++.+.+++++++.++||+|||..
T Consensus 2 ~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~----------------------------- 52 (203)
T cd00268 2 EELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAA----------------------------- 52 (203)
T ss_pred CcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHH-----------------------------
Confidence 344566666766766667778999999999999999999999999999921
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEccCCCCCccceEEeehhhhhhhhccCCCCChHHHHHHHHccCCCCEEEEcCCHH
Q psy6094 118 VNNDVIFSLLQHICTTQRPGAILVYCTYTFMGVSPMKVFFCKNVLQRLMKGVGANSPKRWVKLLRSMLVVPILVFLPGWD 197 (455)
Q Consensus 118 ~~~D~ll~~lk~il~~~~~~~k~ilmSAT~~g~~pv~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~~g~iLVFlp~~~ 197 (455)
.++.++..+. ..+ ...++.+||.+|+.+
T Consensus 53 ----~~~~~l~~~~-~~~-----------------------------------------------~~~~~~viii~p~~~ 80 (203)
T cd00268 53 ----FLIPILEKLD-PSP-----------------------------------------------KKDGPQALILAPTRE 80 (203)
T ss_pred ----HHHHHHHHHH-hhc-----------------------------------------------ccCCceEEEEcCCHH
Confidence 1122232222 000 012456888888888
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCC-----C-ccCCCCCCeeEEE
Q psy6094 198 TINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNI-----A-ETSITIDDIVYVV 265 (455)
Q Consensus 198 ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTni-----a-e~gitI~~V~~VI 265 (455)
-+....+.+..... ..+..+..+||+.+..+....++ +...|+|+|+- . ..-..++++.++|
T Consensus 81 L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lI 148 (203)
T cd00268 81 LALQIAEVARKLGK--HTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKVKYLV 148 (203)
T ss_pred HHHHHHHHHHHHhc--cCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhCCEEE
Confidence 88877776665432 13577888999998877666554 44679999952 1 2225667788766
No 123
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.21 E-value=1.8e-05 Score=86.25 Aligned_cols=85 Identities=19% Similarity=0.220 Sum_probs=56.1
Q ss_pred CeEEEeecCCCChhh--HhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEE----eCCCCcccccccCCCccccccccc
Q psy6094 216 RFQIIPLHSMLPTVS--QKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVV----DCGKTKMSNFDVKDNIATLKPEWI 289 (455)
Q Consensus 216 ~~~v~~lhs~l~~~~--r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VI----D~g~~k~~~yd~~~~~~~l~~~~i 289 (455)
+..++.+-++..... -+..+..|.+|+..|+|-|-+.+-|.+.|+|+.|. |+++- .-|.+.. --
T Consensus 506 ~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~---~~DfRA~-------Er 575 (730)
T COG1198 506 GARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLG---SPDFRAS-------ER 575 (730)
T ss_pred CCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhc---CCCcchH-------HH
Confidence 355666666554432 23567788899999999999999999999999875 44431 1122211 11
Q ss_pred chhhHHhhhcccCCC-CCCeEE
Q psy6094 290 SLANAKQRRGRAGRT-LKRSET 310 (455)
Q Consensus 290 Ska~~~QR~GRaGR~-~~G~c~ 310 (455)
.-.-+.|=+|||||. .+|..+
T Consensus 576 ~fqll~QvaGRAgR~~~~G~Vv 597 (730)
T COG1198 576 TFQLLMQVAGRAGRAGKPGEVV 597 (730)
T ss_pred HHHHHHHHHhhhccCCCCCeEE
Confidence 223366899999997 557554
No 124
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.17 E-value=6.2e-06 Score=73.88 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 60 QMRDAVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 60 ~~q~~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
+.|.++++.+.+++++++.|+||||||+.+.
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHH
Confidence 5799999999999999999999999997655
No 125
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.75 E-value=0.00017 Score=79.10 Aligned_cols=104 Identities=22% Similarity=0.232 Sum_probs=71.0
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCC-ceEEEEeCCCCccCCCCCCee
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEG-VRKIVLATNIAETSITIDDIV 262 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g-~~kVivaTniae~gitI~~V~ 262 (455)
..+.+|||.+.+.+..+.+.+.|.+.+ +..-.|++.-...+- .+... .| .-.|.||||.|.||.||.==.
T Consensus 424 ~~gqPVLVgT~SIe~SE~ls~~L~~~g------i~h~vLNAk~~e~EA-~IIa~--AG~~GaVTIATNMAGRGTDI~Lg~ 494 (925)
T PRK12903 424 KKGQPILIGTAQVEDSETLHELLLEAN------IPHTVLNAKQNAREA-EIIAK--AGQKGAITIATNMAGRGTDIKLSK 494 (925)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCC------CCceeecccchhhHH-HHHHh--CCCCCeEEEecccccCCcCccCch
Confidence 568899999999999999999999875 333345544222232 33332 23 347999999999999986222
Q ss_pred --------EEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 263 --------YVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 263 --------~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
|||-+.++.... -=.|-+|||||.|. |.+-.+.|
T Consensus 495 ~V~~~GGLhVIgTerheSrR------------------IDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 495 EVLELGGLYVLGTDKAESRR------------------IDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred hHHHcCCcEEEecccCchHH------------------HHHHHhcccccCCCCCcceEEEe
Confidence 777655432222 23499999999886 86655555
No 126
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.65 E-value=0.00018 Score=81.58 Aligned_cols=108 Identities=12% Similarity=0.046 Sum_probs=84.8
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCC---CceEEEEeCCCCccCCCCCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPE---GVRKIVLATNIAETSITIDD 260 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~---g~~kVivaTniae~gitI~~ 260 (455)
..+..+|||..-...++.+.+.|...+ +.++.+||+++..+|..+++.|.. +..-+|+||.++..||++..
T Consensus 485 ~~g~KVLIFSQft~~LdiLed~L~~~g------~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~ 558 (1033)
T PLN03142 485 ERDSRVLIFSQMTRLLDILEDYLMYRG------YQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLAT 558 (1033)
T ss_pred hcCCeEEeehhHHHHHHHHHHHHHHcC------CcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhh
Confidence 456789999988888888888887653 778899999999999999999853 34567899999999999999
Q ss_pred eeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC---CeEEecCCh
Q psy6094 261 IVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK---RSETQQYPN 315 (455)
Q Consensus 261 V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~---G~c~~L~t~ 315 (455)
.++||. ||+.= +-+...|+.||+-|.|. =.+|+|++.
T Consensus 559 Ad~VIi--------yD~dW----------NP~~d~QAidRaHRIGQkk~V~VyRLIt~ 598 (1033)
T PLN03142 559 ADIVIL--------YDSDW----------NPQVDLQAQDRAHRIGQKKEVQVFRFCTE 598 (1033)
T ss_pred CCEEEE--------eCCCC----------ChHHHHHHHHHhhhcCCCceEEEEEEEeC
Confidence 999998 44332 22344588888877655 378899984
No 127
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.61 E-value=0.0002 Score=80.92 Aligned_cols=124 Identities=13% Similarity=0.082 Sum_probs=83.2
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCee-
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIV- 262 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~- 262 (455)
..+|.+|||+++.+.++.+++.|...... .++.++. .+.. .+|.++++.|++|...|+++|+....|||+++..
T Consensus 672 ~~~g~~LVlftS~~~l~~v~~~L~~~~~~--~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l 746 (850)
T TIGR01407 672 ITSPKILVLFTSYEMLHMVYDMLNELPEF--EGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGL 746 (850)
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHhhhccc--cCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCce
Confidence 56799999999999999999999763211 1233322 2222 4678888999999999999999999999998765
Q ss_pred -EEEeCCCCcccccccC----------CCcccccc--cccchhhHHhhhcccCCCCC--CeEEec
Q psy6094 263 -YVVDCGKTKMSNFDVK----------DNIATLKP--EWISLANAKQRRGRAGRTLK--RSETQQ 312 (455)
Q Consensus 263 -~VID~g~~k~~~yd~~----------~~~~~l~~--~~iSka~~~QR~GRaGR~~~--G~c~~L 312 (455)
.||-.|+|-..--||. .|-..+.. .|-.--...|-.||.=|... |..+-|
T Consensus 747 ~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 747 VCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 6677888743222211 11111111 13233457888999988664 765544
No 128
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.60 E-value=0.0023 Score=70.47 Aligned_cols=102 Identities=9% Similarity=-0.047 Sum_probs=68.9
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChh---------------------hHhhhhcCCCC-Cce
Q psy6094 186 VVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTV---------------------SQKSIFNTPPE-GVR 243 (455)
Q Consensus 186 ~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~---------------------~r~~v~~~~~~-g~~ 243 (455)
++..+|||.++..+..+.+.|.+..... .....+.++++-..+ ....+.+.|.+ +..
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~-~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~ 592 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEK-FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENP 592 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccc-cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCc
Confidence 5899999999999999998887643110 012344444443222 11245566654 577
Q ss_pred EEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCC-CCC
Q psy6094 244 KIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRT-LKR 307 (455)
Q Consensus 244 kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~-~~G 307 (455)
+|+|.+|..-||+|.|.+..++ .| .|..-..+.|-.||+-|. .+|
T Consensus 593 ~ilIVvdmllTGFDaP~l~tLy---------ld----------Kplk~h~LlQai~R~nR~~~~~ 638 (667)
T TIGR00348 593 KLLIVVDMLLTGFDAPILNTLY---------LD----------KPLKYHGLLQAIARTNRIDGKD 638 (667)
T ss_pred eEEEEEcccccccCCCccceEE---------Ee----------ccccccHHHHHHHHhccccCCC
Confidence 9999999999999999998766 22 233334577999999994 444
No 129
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.55 E-value=0.00051 Score=74.39 Aligned_cols=105 Identities=19% Similarity=0.179 Sum_probs=72.9
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCC----
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITID---- 259 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~---- 259 (455)
..+.+|||.+.+.++.+.+.+.|.+.+ +....|++.-...| ..+...... .-.|.||||.|.||.||.
T Consensus 425 ~~GrPVLVgt~sI~~SE~ls~~L~~~g------I~h~vLNAk~~~~E-A~IIa~AG~-~gaVTIATNMAGRGTDIkLg~~ 496 (764)
T PRK12326 425 ETGQPVLVGTHDVAESEELAERLRAAG------VPAVVLNAKNDAEE-ARIIAEAGK-YGAVTVSTQMAGRGTDIRLGGS 496 (764)
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHhCC------CcceeeccCchHhH-HHHHHhcCC-CCcEEEEecCCCCccCeecCCC
Confidence 678899999999999999999999875 44444555533333 344433211 246999999999999985
Q ss_pred ------Ce-----eEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 260 ------DI-----VYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 260 ------~V-----~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
+| -|||=+.++ -|+--=.|-+|||||.|. |.+-.+.|
T Consensus 497 ~~~~~~~V~~~GGLhVIgTerh------------------eSrRID~QLrGRaGRQGDpGss~f~lS 545 (764)
T PRK12326 497 DEADRDRVAELGGLHVIGTGRH------------------RSERLDNQLRGRAGRQGDPGSSVFFVS 545 (764)
T ss_pred cccchHHHHHcCCcEEEeccCC------------------chHHHHHHHhcccccCCCCCceeEEEE
Confidence 11 255544433 333334599999999886 87776666
No 130
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.01 E-value=0.0024 Score=70.86 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=47.3
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCC-ceEEEEeCCCCccCCCCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEG-VRKIVLATNIAETSITID 259 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g-~~kVivaTniae~gitI~ 259 (455)
..+.+|||-+.+.+.-+.+.++|...+. ..-.|.+.-...|- .+.... | .-.|.||||.|.||-||.
T Consensus 447 ~~GrPVLVGT~SVe~SE~ls~~L~~~gi------~h~VLNAk~~~~EA-~IIa~A--G~~GaVTIATNMAGRGTDIk 514 (913)
T PRK13103 447 ALGRPVLVGTATIETSEHMSNLLKKEGI------EHKVLNAKYHEKEA-EIIAQA--GRPGALTIATNMAGRGTDIL 514 (913)
T ss_pred hCCCCEEEEeCCHHHHHHHHHHHHHcCC------cHHHhccccchhHH-HHHHcC--CCCCcEEEeccCCCCCCCEe
Confidence 6788999999999999999999998752 22223343223333 343322 3 246999999999999983
No 131
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=96.83 E-value=0.0052 Score=68.45 Aligned_cols=105 Identities=20% Similarity=0.213 Sum_probs=71.0
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCC---C
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITID---D 260 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~---~ 260 (455)
..+.+|||-+.+...-+.++..|...+ +....|++.-...|- .+...... .-.|.||||.|.||-||. +
T Consensus 566 ~~grPvLigt~si~~se~ls~~L~~~g------i~h~vLNak~~~~Ea-~iia~AG~-~g~VTIATNmAGRGTDIkl~~~ 637 (970)
T PRK12899 566 RKGNPILIGTESVEVSEKLSRILRQNR------IEHTVLNAKNHAQEA-EIIAGAGK-LGAVTVATNMAGRGTDIKLDEE 637 (970)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcC------CcceecccchhhhHH-HHHHhcCC-CCcEEEeeccccCCcccccCch
Confidence 567789999999999999999999875 333444444222232 33332211 247999999999999984 1
Q ss_pred e-----eEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 261 I-----VYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 261 V-----~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
| -+||-+.++ -|+--=.|-.|||||.|. |.+-.+.|
T Consensus 638 v~~~GGLhVIgTer~------------------es~Rid~Ql~GRagRQGdpGss~f~lS 679 (970)
T PRK12899 638 AVAVGGLYVIGTSRH------------------QSRRIDRQLRGRCARLGDPGAAKFFLS 679 (970)
T ss_pred HHhcCCcEEEeeccC------------------chHHHHHHHhcccccCCCCCceeEEEE
Confidence 2 255544433 233344599999999987 98776666
No 132
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.77 E-value=0.0024 Score=59.62 Aligned_cols=34 Identities=24% Similarity=0.477 Sum_probs=25.1
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc
Q psy6094 55 KLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH 88 (455)
Q Consensus 55 ~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq 88 (455)
.-|....|...++++.+++.+++.|+.|||||+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~L 35 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFL 35 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHH
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHH
Confidence 3477788999999999999999999999999954
No 133
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.75 E-value=0.0034 Score=70.26 Aligned_cols=105 Identities=21% Similarity=0.184 Sum_probs=71.3
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCC----
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITID---- 259 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~---- 259 (455)
..+.+|||-+.+.+.-+.+.++|...+ +..-.|.+.....|-.-|-+.-.+| .|-||||.|.||-||.
T Consensus 626 ~~GrPVLVGT~SVe~SE~lS~~L~~~g------I~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~ 697 (1112)
T PRK12901 626 EAGRPVLVGTTSVEISELLSRMLKMRK------IPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPE 697 (1112)
T ss_pred HCCCCEEEEeCcHHHHHHHHHHHHHcC------CcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchh
Confidence 578899999999999999999999875 2222334433333433333333333 6999999999999985
Q ss_pred ----CeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 260 ----DIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 260 ----~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
+=-|||-+.++ -|+--=.|-+|||||.|. |.+-.+.|
T Consensus 698 V~e~GGL~VIgTerh------------------eSrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 698 VKAAGGLAIIGTERH------------------ESRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred hHHcCCCEEEEccCC------------------CcHHHHHHHhcccccCCCCCcceEEEE
Confidence 22366654443 233334599999999886 87665555
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.66 E-value=0.0093 Score=66.03 Aligned_cols=67 Identities=18% Similarity=0.141 Sum_probs=47.7
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCC-ChhhHhhhhcCC-CCCceEEEEeCCCCccCCCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSML-PTVSQKSIFNTP-PEGVRKIVLATNIAETSITI 258 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l-~~~~r~~v~~~~-~~g~~kVivaTniae~gitI 258 (455)
..+.+|||-+.+.+.-+.+.+.|...+ +..-.|++.- ..++-..+.... .+ -.|.||||.|.||.||
T Consensus 422 ~~grPVLIgT~SIe~SE~ls~~L~~~g------i~h~vLNAk~~~~~~EA~IIA~AG~~--G~VTIATNMAGRGTDI 490 (870)
T CHL00122 422 QTGRPILIGTTTIEKSELLSQLLKEYR------LPHQLLNAKPENVRRESEIVAQAGRK--GSITIATNMAGRGTDI 490 (870)
T ss_pred hcCCCEEEeeCCHHHHHHHHHHHHHcC------CccceeeCCCccchhHHHHHHhcCCC--CcEEEeccccCCCcCe
Confidence 678899999999999999999999875 3334455431 112223344332 23 3699999999999987
No 135
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.58 E-value=0.048 Score=59.96 Aligned_cols=107 Identities=12% Similarity=0.060 Sum_probs=68.9
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeE
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVY 263 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~ 263 (455)
..+.+|-||..|..-.+.+++..+... -.|+.+.|.-+..+ + +.+ +..+|++=|.+...|+++++..+
T Consensus 280 ~~gknIcvfsSt~~~~~~v~~~~~~~~------~~Vl~l~s~~~~~d---v-~~W--~~~~VviYT~~itvG~Sf~~~HF 347 (824)
T PF02399_consen 280 NAGKNICVFSSTVSFAEIVARFCARFT------KKVLVLNSTDKLED---V-ESW--KKYDVVIYTPVITVGLSFEEKHF 347 (824)
T ss_pred hCCCcEEEEeChHHHHHHHHHHHHhcC------CeEEEEcCCCCccc---c-ccc--cceeEEEEeceEEEEeccchhhc
Confidence 457788899999888888887777653 56777777655542 2 222 46799999999999999875433
Q ss_pred EEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCC
Q psy6094 264 VVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYP 314 (455)
Q Consensus 264 VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t 314 (455)
=-=+++.|...+ | .+..+..|..||+-.......|.-+.
T Consensus 348 ~~~f~yvk~~~~----g--------pd~~s~~Q~lgRvR~l~~~ei~v~~d 386 (824)
T PF02399_consen 348 DSMFAYVKPMSY----G--------PDMVSVYQMLGRVRSLLDNEIYVYID 386 (824)
T ss_pred eEEEEEecCCCC----C--------CcHHHHHHHHHHHHhhccCeEEEEEe
Confidence 111122111111 1 23345779999997666666655555
No 136
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.42 E-value=0.016 Score=66.34 Aligned_cols=125 Identities=12% Similarity=0.034 Sum_probs=82.0
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCC--e
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDD--I 261 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~--V 261 (455)
..+|.+|||+++.+.++.+++.|..... ..++.++. . ++....+.++.+.|+.+...|+++|+-..-|||+|+ +
T Consensus 750 ~~~g~~LVLFtSy~~l~~v~~~l~~~~~--~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l 825 (928)
T PRK08074 750 ATKGRMLVLFTSYEMLKKTYYNLKNEEE--LEGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDEL 825 (928)
T ss_pred hCCCCEEEEECCHHHHHHHHHHHhhccc--ccCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCce
Confidence 5789999999999999999999986431 11122222 2 333345677788888888899999999999999986 5
Q ss_pred eEEEeCCCCccccccc----------CCCccccc--ccccchhhHHhhhcccCCCCC--CeEEec
Q psy6094 262 VYVVDCGKTKMSNFDV----------KDNIATLK--PEWISLANAKQRRGRAGRTLK--RSETQQ 312 (455)
Q Consensus 262 ~~VID~g~~k~~~yd~----------~~~~~~l~--~~~iSka~~~QR~GRaGR~~~--G~c~~L 312 (455)
..||-.++|-..--|| ..|-..+. ..|...-...|=.||.=|... |..+.|
T Consensus 826 ~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~il 890 (928)
T PRK08074 826 SCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVL 890 (928)
T ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEe
Confidence 7888888874211111 11111121 123334456788888877654 766533
No 137
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.42 E-value=0.0043 Score=56.03 Aligned_cols=123 Identities=15% Similarity=0.055 Sum_probs=74.9
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCC--CCccCCCCCC-
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATN--IAETSITIDD- 260 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTn--iae~gitI~~- 260 (455)
..+|.+|||+|+.+..+.+.+.+...... .++.++.= ...+...+++.|..+..-|++++. -..-|||++|
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~--~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEE--KGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E---ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhccc--ccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCc
Confidence 56799999999999999999988865310 11222221 355667788888888899999998 7888999986
Q ss_pred -eeEEEeCCCCcccccccCCCc------------ccccccccchhhHHhhhcccCCCCC--CeEEec
Q psy6094 261 -IVYVVDCGKTKMSNFDVKDNI------------ATLKPEWISLANAKQRRGRAGRTLK--RSETQQ 312 (455)
Q Consensus 261 -V~~VID~g~~k~~~yd~~~~~------------~~l~~~~iSka~~~QR~GRaGR~~~--G~c~~L 312 (455)
.+.||-.|+|-....|+.... ......+..--...|=.||+=|... |..+-|
T Consensus 81 ~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ll 147 (167)
T PF13307_consen 81 LLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILL 147 (167)
T ss_dssp SEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEE
T ss_pred hhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEE
Confidence 778999999865444332110 0111122333357788999988766 555543
No 138
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=96.31 E-value=0.0067 Score=53.08 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=17.4
Q ss_pred HcCCeEEEEcCCCCCcccc-hh-hhhh
Q psy6094 70 RNNQITVISGETGSGPPLH-LD-FITL 94 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtq-lp-~ll~ 94 (455)
..++..+|.-.+|+|||+. +| .+-+
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~ 28 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVRE 28 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHH
T ss_pred CCCceeEEecCCCCCCcccccHHHHHH
Confidence 3577889999999999997 55 4443
No 139
>KOG0949|consensus
Probab=96.30 E-value=0.0038 Score=68.77 Aligned_cols=95 Identities=22% Similarity=0.143 Sum_probs=66.5
Q ss_pred EEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhh
Q psy6094 219 IIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRR 298 (455)
Q Consensus 219 v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~ 298 (455)
+-..|++|...+|..|.--|+.|...|++||..++-||+.|=-++|.- .++|+. .--+|.|.+
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~--------------gDsLQL---~plny~Qma 1027 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFA--------------GDSLQL---DPLNYKQMA 1027 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEe--------------cccccc---CchhHHhhh
Confidence 566799999999999988899999999999999999999996555542 122332 335788999
Q ss_pred cccCCCCC---CeEEec-CChhh---hccCCCCcccccC
Q psy6094 299 GRAGRTLK---RSETQQ-YPNDV---LNMLKDPELEGVN 330 (455)
Q Consensus 299 GRaGR~~~---G~c~~L-~t~~~---~~~~~~PEi~r~~ 330 (455)
|||||.|= |.+.-+ ++... +--...|.|+-..
T Consensus 1028 GRAGRRGFD~lGnV~FmgiP~~kv~rLlts~L~diqG~~ 1066 (1330)
T KOG0949|consen 1028 GRAGRRGFDTLGNVVFMGIPRQKVQRLLTSLLPDIQGAY 1066 (1330)
T ss_pred ccccccccccccceEEEeCcHHHHHHHHHHhhhcccCCC
Confidence 99999762 655433 33211 2223355565555
No 140
>KOG0391|consensus
Probab=96.14 E-value=0.03 Score=63.02 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=93.5
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCce--EEEEeCCCCccCCCCCCe
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVR--KIVLATNIAETSITIDDI 261 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~--kVivaTniae~gitI~~V 261 (455)
..+..+|||.--..-.+-|...|..++ +..+.|-|.-..++|+..+++|....| ..|++|--...||++-+.
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLnyHg------ylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgA 1347 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNYHG------YLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGA 1347 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhhcc------eEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccC
Confidence 678899999988888888888888775 889999999999999999999976543 568999999999999999
Q ss_pred eEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCChhhh
Q psy6094 262 VYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPNDVL 318 (455)
Q Consensus 262 ~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~~~ 318 (455)
+.||= ||..-+ |.=-++|.-|.-|.|+++.=+.|||+++...
T Consensus 1348 DTVvF--------YDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLISe~TI 1389 (1958)
T KOG0391|consen 1348 DTVVF--------YDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLISERTI 1389 (1958)
T ss_pred ceEEE--------ecCCCC-------chhhhHHHHHHHhhcCccceEEEEeeccchH
Confidence 99994 554433 2223677789999999999999999995443
No 141
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=96.09 E-value=0.038 Score=61.82 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHcCCeEEEEcCCCCCcc
Q psy6094 58 SYQMRDAVLDMVRNNQITVISGETGSGPP 86 (455)
Q Consensus 58 ~~~~q~~il~~i~~~~~vii~~~TGSGKT 86 (455)
+.++|.+++..+..++++|+.++||||||
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKT 121 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKT 121 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChH
Confidence 78899999999999999999999999999
No 142
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.91 E-value=0.057 Score=59.51 Aligned_cols=123 Identities=10% Similarity=-0.061 Sum_probs=81.9
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCce-EEEEeCCCCccCCCCCCe-
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVR-KIVLATNIAETSITIDDI- 261 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~-kVivaTniae~gitI~~V- 261 (455)
..+|.+|||+|+.+..+.+.+.+..... ...+..+|.-+..+ .+++|.++.- -++|+|.-..-|||+++=
T Consensus 477 ~~~~~~lvlF~Sy~~l~~~~~~~~~~~~-----~~~v~~q~~~~~~~---~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~ 548 (654)
T COG1199 477 ASPGGVLVLFPSYEYLKRVAERLKDERS-----TLPVLTQGEDEREE---LLEKFKASGEGLILVGGGSFWEGVDFPGDA 548 (654)
T ss_pred hcCCCEEEEeccHHHHHHHHHHHhhcCc-----cceeeecCCCcHHH---HHHHHHHhcCCeEEEeeccccCcccCCCCC
Confidence 6778999999999999999999987542 13455666666554 4444444433 899999999999999864
Q ss_pred -eEEEeCCCCcccccc----------cCCCc--ccccccccchhhHHhhhcccCCCCC--CeEEecCC
Q psy6094 262 -VYVVDCGKTKMSNFD----------VKDNI--ATLKPEWISLANAKQRRGRAGRTLK--RSETQQYP 314 (455)
Q Consensus 262 -~~VID~g~~k~~~yd----------~~~~~--~~l~~~~iSka~~~QR~GRaGR~~~--G~c~~L~t 314 (455)
+.||-.|+|-...-| ...|- ......+..--...|=.||+=|... |.++-|=.
T Consensus 549 l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 549 LRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 667777877543222 22221 1223334445567788888877544 77776533
No 143
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.89 E-value=0.0067 Score=54.67 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=31.0
Q ss_pred cCCCHHHHHHHHHHHHcC-CeEEEEcCCCCCcccchh
Q psy6094 55 KLPSYQMRDAVLDMVRNN-QITVISGETGSGPPLHLD 90 (455)
Q Consensus 55 ~lP~~~~q~~il~~i~~~-~~vii~~~TGSGKTtqlp 90 (455)
..+..++|.++++.+.+. +++++.|+||||||+.+.
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~ 42 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAAL 42 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHH
Confidence 456678899999999988 999999999999996544
No 144
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=95.81 E-value=0.027 Score=61.62 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=74.7
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhH-hhhhcCCCCCceEEEEeCCCCccCCCCCCeeEE
Q psy6094 186 VVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQ-KSIFNTPPEGVRKIVLATNIAETSITIDDIVYV 264 (455)
Q Consensus 186 ~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r-~~v~~~~~~g~~kVivaTniae~gitI~~V~~V 264 (455)
.|..||||.+...++.+.+.+........+++ +..+-|.-.+.++ ...|.. .+.--+|.++-+.+.||||+|.|..+
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~-a~~IT~d~~~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRY-AMKITGDAEQAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCce-EEEEeccchhhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeee
Confidence 56899999999999999999987643222233 3334444333222 122332 33445899999999999999999988
Q ss_pred EeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC--C------eEEecCC
Q psy6094 265 VDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK--R------SETQQYP 314 (455)
Q Consensus 265 ID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~--G------~c~~L~t 314 (455)
| |+-. --||.-++|..||+=|..+ | ..|.++.
T Consensus 504 V---------F~r~---------VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifD 543 (875)
T COG4096 504 V---------FDRK---------VRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFD 543 (875)
T ss_pred e---------ehhh---------hhhHHHHHHHhcCccccCccccCccccceeEEEEE
Confidence 8 3322 2388889999999988655 3 4456666
No 145
>KOG0392|consensus
Probab=95.81 E-value=0.031 Score=63.21 Aligned_cols=115 Identities=14% Similarity=0.192 Sum_probs=88.0
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCC-ceEE-EEeCCCCccCCCCCCeeE
Q psy6094 186 VVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEG-VRKI-VLATNIAETSITIDDIVY 263 (455)
Q Consensus 186 ~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g-~~kV-ivaTniae~gitI~~V~~ 263 (455)
+..+||||.=+..++-+.+.|.+... +.+....|-|++++.+|.++.++|.++ ...| +++|-|..-|++.-+.+-
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~m---psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADT 1416 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYM---PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADT 1416 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhc---CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCce
Confidence 45799999998888888877776542 356777899999999999999999887 4454 678999999999999999
Q ss_pred EEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCChhhh
Q psy6094 264 VVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPNDVL 318 (455)
Q Consensus 264 VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~~~ 318 (455)
||=. +-.|||-.. -+|.-|+-|-|..+-=.+|||+++..+
T Consensus 1417 VVFv----EHDWNPMrD-----------LQAMDRAHRIGQKrvVNVyRlItrGTL 1456 (1549)
T KOG0392|consen 1417 VVFV----EHDWNPMRD-----------LQAMDRAHRIGQKRVVNVYRLITRGTL 1456 (1549)
T ss_pred EEEE----ecCCCchhh-----------HHHHHHHHhhcCceeeeeeeehhcccH
Confidence 9820 011444444 246668888887666789999995443
No 146
>KOG0385|consensus
Probab=95.79 E-value=0.17 Score=55.03 Aligned_cols=112 Identities=12% Similarity=0.076 Sum_probs=82.4
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCC---ceEEEEeCCCCccCCCCCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEG---VRKIVLATNIAETSITIDD 260 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g---~~kVivaTniae~gitI~~ 260 (455)
..+..||+|-.-..-.+-+.+...-+ +|..+.+-|+.+.++|...++.|... +.-.+++|-.+.-||++-.
T Consensus 485 ~~GhRVLIFSQmt~mLDILeDyc~~R------~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~a 558 (971)
T KOG0385|consen 485 EQGHRVLIFSQMTRMLDILEDYCMLR------GYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTA 558 (971)
T ss_pred hCCCeEEEeHHHHHHHHHHHHHHHhc------CceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccccccc
Confidence 56788999954333333333333322 48899999999999999988877543 3456789999999999999
Q ss_pred eeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCChh
Q psy6094 261 IVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPND 316 (455)
Q Consensus 261 V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~ 316 (455)
.+.||=++ ..|||... -+|.+|+-|.|...+=.+|||.|++
T Consensus 559 ADtVIlyD----SDWNPQ~D-----------LQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 559 ADTVILYD----SDWNPQVD-----------LQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred ccEEEEec----CCCCchhh-----------hHHHHHHHhhCCcCceEEEEEeccc
Confidence 99888411 11444444 4688999999999999999999944
No 147
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=95.61 E-value=0.0084 Score=53.92 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHc-------CCeEEEEcCCCCCcc
Q psy6094 57 PSYQMRDAVLDMVRN-------NQITVISGETGSGPP 86 (455)
Q Consensus 57 P~~~~q~~il~~i~~-------~~~vii~~~TGSGKT 86 (455)
.++++|.+++..+.+ +..+++.++||||||
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT 39 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKT 39 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcC
Confidence 457789998888873 688999999999999
No 148
>PF13245 AAA_19: Part of AAA domain
Probab=95.57 E-value=0.0075 Score=47.03 Aligned_cols=25 Identities=20% Similarity=0.386 Sum_probs=19.2
Q ss_pred HHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 66 LDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 66 l~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
..++.++..++|.|++|||||+.+.
T Consensus 4 ~~al~~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 4 RRALAGSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHhhCCeEEEECCCCCCHHHHHH
Confidence 3356667888889999999995543
No 149
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.39 E-value=0.012 Score=54.78 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=16.3
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
+++++.|+||+||||.++
T Consensus 2 ~vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred EEEEEECCCCCchHhHHH
Confidence 478899999999999988
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.33 E-value=0.094 Score=58.15 Aligned_cols=119 Identities=9% Similarity=0.009 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhc----CCCCCceEEEEeCCCCccCCCCCC
Q psy6094 185 LVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFN----TPPEGVRKIVLATNIAETSITIDD 260 (455)
Q Consensus 185 ~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~----~~~~g~~kVivaTniae~gitI~~ 260 (455)
.+|.+|||+++.+..+.+++.|.... ...+ ..+|.. .+.++++ .|..|...|+++|.-..-|||+|+
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~-----~~~l-l~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pG 603 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDL-----RLML-LVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPG 603 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhc-----CCcE-EEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCC
Confidence 56669999999999999999987532 1222 235543 3444553 344567789999999999999986
Q ss_pred --eeEEEeCCCCcccccccC----------CCccccc--ccccchhhHHhhhcccCCCCC--CeEEec
Q psy6094 261 --IVYVVDCGKTKMSNFDVK----------DNIATLK--PEWISLANAKQRRGRAGRTLK--RSETQQ 312 (455)
Q Consensus 261 --V~~VID~g~~k~~~yd~~----------~~~~~l~--~~~iSka~~~QR~GRaGR~~~--G~c~~L 312 (455)
.+.||-.++|-..--||- .|-+.+. ..|-.--...|=.||.=|... |..+-|
T Consensus 604 d~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~il 671 (697)
T PRK11747 604 DYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTIL 671 (697)
T ss_pred CceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEE
Confidence 788998888743222221 1111111 112222346788888877543 766644
No 151
>KOG0951|consensus
Probab=95.30 E-value=0.1 Score=59.49 Aligned_cols=120 Identities=17% Similarity=0.087 Sum_probs=76.6
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCC----------------CCCeEEEeecCCCChhhHhhhhcCCCCCceEEEE
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFN----------------SSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVL 247 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~----------------~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kViv 247 (455)
..+.+.+||+|+++.+..++..+-...... ...+....=|-+++..++..+-.-|..|..+|+|
T Consensus 1357 ~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v 1436 (1674)
T KOG0951|consen 1357 GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCV 1436 (1674)
T ss_pred cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEE
Confidence 567889999999999988876554321100 0111111118899999999888888899998887
Q ss_pred eCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCC
Q psy6094 248 ATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYP 314 (455)
Q Consensus 248 aTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t 314 (455)
..-= -.|+.... ..||--| ...||-+.+. ....+-+...|..|+|.| .|.|+-+..
T Consensus 1437 ~s~~-~~~~~~~~-~lVvvmg---t~~ydg~e~~----~~~y~i~~ll~m~G~a~~--~~k~vi~~~ 1492 (1674)
T KOG0951|consen 1437 MSRD-CYGTKLKA-HLVVVMG---TQYYDGKEHS----YEDYPIAELLQMVGLASG--AGKCVIMCH 1492 (1674)
T ss_pred EEcc-cccccccc-eEEEEec---ceeecccccc----cccCchhHHHHHhhhhcC--CccEEEEec
Confidence 6432 33333221 2233223 2346655442 234567889999999988 578887766
No 152
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.27 E-value=0.0097 Score=57.95 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=20.2
Q ss_pred HHHHcCCeEEEEcCCCCCcccchh
Q psy6094 67 DMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 67 ~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
.+++.+.+++|+|+|||||||.+-
T Consensus 122 ~~v~~~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 122 SAVRGRGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp HCHHTTEEEEEEESTTSSHHHHHH
T ss_pred hccccceEEEEECCCccccchHHH
Confidence 345778999999999999997765
No 153
>KOG1123|consensus
Probab=95.24 E-value=0.055 Score=55.96 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=76.1
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCC-ceEEEEeCCCCccCCCCCCee
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEG-VRKIVLATNIAETSITIDDIV 262 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g-~~kVivaTniae~gitI~~V~ 262 (455)
..+..|+||--..-.....+-.|.+- .+||.-++.+|.+|++.|.-. ...-|+-.-|+.+|||+|...
T Consensus 541 ~RgDKiIVFsDnvfALk~YAikl~Kp-----------fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAn 609 (776)
T KOG1123|consen 541 RRGDKIIVFSDNVFALKEYAIKLGKP-----------FIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEAN 609 (776)
T ss_pred hcCCeEEEEeccHHHHHHHHHHcCCc-----------eEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCccc
Confidence 56778999988777666666555442 278999999999999998643 456677778999999999999
Q ss_pred EEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCC-------eEEecCChh
Q psy6094 263 YVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKR-------SETQQYPND 316 (455)
Q Consensus 263 ~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G-------~c~~L~t~~ 316 (455)
+.|.-. . -..|+-+-.||.||.=|+..+ .-|.|.+.+
T Consensus 610 vLIQIS--------S---------H~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~D 653 (776)
T KOG1123|consen 610 VLIQIS--------S---------HGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKD 653 (776)
T ss_pred EEEEEc--------c---------cccchHHHHHHHHHHHHHhhcCccccceeeeeeeecc
Confidence 998511 1 124666677999988775432 455666643
No 154
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=95.24 E-value=0.016 Score=57.25 Aligned_cols=28 Identities=18% Similarity=0.466 Sum_probs=24.1
Q ss_pred HHHHHH----HHHHHHcCCeEEEEcCCCCCcc
Q psy6094 59 YQMRDA----VLDMVRNNQITVISGETGSGPP 86 (455)
Q Consensus 59 ~~~q~~----il~~i~~~~~vii~~~TGSGKT 86 (455)
++.|.+ +..++.+++.+++.+|||+|||
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKT 41 (289)
T smart00488 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKT 41 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchh
Confidence 677777 6666778999999999999999
No 155
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=95.24 E-value=0.016 Score=57.25 Aligned_cols=28 Identities=18% Similarity=0.466 Sum_probs=24.1
Q ss_pred HHHHHH----HHHHHHcCCeEEEEcCCCCCcc
Q psy6094 59 YQMRDA----VLDMVRNNQITVISGETGSGPP 86 (455)
Q Consensus 59 ~~~q~~----il~~i~~~~~vii~~~TGSGKT 86 (455)
++.|.+ +..++.+++.+++.+|||+|||
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKT 41 (289)
T smart00489 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKT 41 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchh
Confidence 677777 6666778999999999999999
No 156
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.18 E-value=0.013 Score=54.77 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCCe-EEEEcCCCCCcccchh
Q psy6094 60 QMRDAVLDMVRNNQI-TVISGETGSGPPLHLD 90 (455)
Q Consensus 60 ~~q~~il~~i~~~~~-vii~~~TGSGKTtqlp 90 (455)
..|.+.+..+.++.. .+|.||+||||||.+.
T Consensus 4 ~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 4 ESQREAIQSALSSNGITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCChHHHHH
Confidence 468888888888886 9999999999997776
No 157
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.11 E-value=0.16 Score=57.34 Aligned_cols=120 Identities=15% Similarity=0.037 Sum_probs=77.6
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCC--Ce
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITID--DI 261 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~--~V 261 (455)
..+|.+||++++.+.++.+++.|.... ..++ ..|.-. .+.++.+.|..+...|+++|+-.--|||+| +.
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~------~~~l-~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~ 715 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQ------VSHL-AQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADR 715 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcC------CcEE-EeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCe
Confidence 568999999999999999999987531 2222 223111 234567777778889999999999999996 45
Q ss_pred eEEEeCCCCcccccccC----------CCcccccc--cccchhhHHhhhcccCCCCC--CeEEec
Q psy6094 262 VYVVDCGKTKMSNFDVK----------DNIATLKP--EWISLANAKQRRGRAGRTLK--RSETQQ 312 (455)
Q Consensus 262 ~~VID~g~~k~~~yd~~----------~~~~~l~~--~~iSka~~~QR~GRaGR~~~--G~c~~L 312 (455)
..||-.++|-..-.||- .|-+.+.. .|-.--...|=.||.=|... |..+.|
T Consensus 716 ~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~il 780 (820)
T PRK07246 716 MIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLIL 780 (820)
T ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 66666787744332321 12122222 23333457788888888664 765543
No 158
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.11 E-value=0.096 Score=58.25 Aligned_cols=124 Identities=13% Similarity=0.110 Sum_probs=76.0
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCC----CCCeEEEeecCCCChhhHhhhhcCCCC----CceEEEEeC--CCCc
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFN----SSRFQIIPLHSMLPTVSQKSIFNTPPE----GVRKIVLAT--NIAE 253 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~----~~~~~v~~lhs~l~~~~r~~v~~~~~~----g~~kVivaT--niae 253 (455)
..+|.+|||+|+..-.+.+.+.+...+... ...+.+-+ .+ ..++..+++.|.. |.--|++|+ .-..
T Consensus 520 ~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~---~~~~~~~l~~f~~~~~~~~gavL~av~gGk~s 595 (705)
T TIGR00604 520 IIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KD---AQETSDALERYKQAVSEGRGAVLLSVAGGKVS 595 (705)
T ss_pred cCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CC---cchHHHHHHHHHHHHhcCCceEEEEecCCccc
Confidence 568999999999999999998887543110 01122222 11 1355667776643 445699999 7788
Q ss_pred cCCCCCC--eeEEEeCCCCcccccccCCC-------------cc-cccccccchhhHHhhhcccCCCCC--CeEEec
Q psy6094 254 TSITIDD--IVYVVDCGKTKMSNFDVKDN-------------IA-TLKPEWISLANAKQRRGRAGRTLK--RSETQQ 312 (455)
Q Consensus 254 ~gitI~~--V~~VID~g~~k~~~yd~~~~-------------~~-~l~~~~iSka~~~QR~GRaGR~~~--G~c~~L 312 (455)
=|||++| .+.||-.|+|-....|+... -. .+. ....--...|=+||+=|... |..+-+
T Consensus 596 EGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~a~~~v~QaiGR~IR~~~D~G~iill 671 (705)
T TIGR00604 596 EGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFY-EFDAMRAVNQAIGRVIRHKDDYGSIVLL 671 (705)
T ss_pred CccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHH-HHHHHHHHHHHhCccccCcCceEEEEEE
Confidence 8999986 68888899986433222211 00 111 11112346788888888765 655443
No 159
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.04 E-value=0.017 Score=57.76 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=21.6
Q ss_pred HHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 65 VLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 65 il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..++..+.+++|+|+|||||||.+-
T Consensus 137 L~~~v~~~~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 137 IRSAIDSRLNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHH
Confidence 45567788899999999999997664
No 160
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.98 E-value=0.012 Score=43.93 Aligned_cols=20 Identities=40% Similarity=0.697 Sum_probs=17.2
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.+.+++|.|++||||||.+-
T Consensus 22 ~g~~tli~G~nGsGKSTllD 41 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLD 41 (62)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34589999999999998875
No 161
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.95 E-value=0.021 Score=56.70 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 63 DAVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 63 ~~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
+-+..++..+.+++|+|+|||||||.+-
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHH
Confidence 3345567788899999999999997764
No 162
>PRK10536 hypothetical protein; Provisional
Probab=94.94 E-value=0.02 Score=55.19 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=30.9
Q ss_pred ccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc
Q psy6094 54 KKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH 88 (455)
Q Consensus 54 ~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq 88 (455)
..-|....|...+.++.++.++++.|++|||||+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~L 90 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWI 90 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 34677888999999999999999999999999944
No 163
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=94.91 E-value=0.18 Score=56.24 Aligned_cols=68 Identities=16% Similarity=0.105 Sum_probs=46.9
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCC-CChhhHhhhhcCCCCCceEEEEeCCCCccCCCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSM-LPTVSQKSIFNTPPEGVRKIVLATNIAETSITI 258 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~-l~~~~r~~v~~~~~~g~~kVivaTniae~gitI 258 (455)
..+.+|||-+.+.+.-+.+.+.|...+ +..-.|++. ...+.-..+...... .-.|-||||.|.||-||
T Consensus 437 ~~GrPVLIgT~SVe~SE~ls~~L~~~g------i~h~vLNAk~~~~~~EA~IIa~AG~-~GaVTIATNMAGRGTDI 505 (939)
T PRK12902 437 KQGRPVLVGTTSVEKSELLSALLQEQG------IPHNLLNAKPENVEREAEIVAQAGR-KGAVTIATNMAGRGTDI 505 (939)
T ss_pred hCCCCEEEeeCCHHHHHHHHHHHHHcC------CchheeeCCCcchHhHHHHHHhcCC-CCcEEEeccCCCCCcCE
Confidence 578899999999999999999999875 222334443 121222334443211 23699999999999887
No 164
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.84 E-value=0.029 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.8
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|..+++.|+.||||||.+-
T Consensus 24 I~~gef~vliGpSGsGKTTtLk 45 (309)
T COG1125 24 IEEGEFLVLIGPSGSGKTTTLK 45 (309)
T ss_pred ecCCeEEEEECCCCCcHHHHHH
Confidence 5678899999999999999876
No 165
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.74 E-value=0.025 Score=51.92 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=20.2
Q ss_pred HHHHcCCeEEEEcCCCCCcccchh
Q psy6094 67 DMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 67 ~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
.++..+.+++|.|+|||||||.+-
T Consensus 20 ~~v~~g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 20 LAVEARKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHhCCCEEEEECCCCCCHHHHHH
Confidence 346789999999999999997654
No 166
>KOG0384|consensus
Probab=94.64 E-value=0.084 Score=59.92 Aligned_cols=114 Identities=11% Similarity=0.127 Sum_probs=90.3
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCC---CceEEEEeCCCCccCCCCCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPE---GVRKIVLATNIAETSITIDD 260 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~---g~~kVivaTniae~gitI~~ 260 (455)
..+..||||-.-.+-.+-|++.|..++ |..-.|-|++..+-|+.++..|.. ...-.++||-...-||++-.
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~~r~------ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLat 770 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLSLRG------YPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLAT 770 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHHHcC------CcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccc
Confidence 456789999888888888899988774 778889999999999999887743 34677899999999999988
Q ss_pred eeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCChhhh
Q psy6094 261 IVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPNDVL 318 (455)
Q Consensus 261 V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~~~ 318 (455)
.+-||-++ ..+||.+.+ +|.-|+-|.|....=..|||.|.+..
T Consensus 771 ADTVIIFD----SDWNPQNDL-----------QAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 771 ADTVIIFD----SDWNPQNDL-----------QAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred cceEEEeC----CCCCcchHH-----------HHHHHHHhhcccceEEEEEEecCCch
Confidence 88888433 237777774 35558888887766789999995433
No 167
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.60 E-value=0.072 Score=59.25 Aligned_cols=30 Identities=10% Similarity=0.272 Sum_probs=24.4
Q ss_pred CCHHHHHHHHH----HHHcCCeEEEEcCCCCCcc
Q psy6094 57 PSYQMRDAVLD----MVRNNQITVISGETGSGPP 86 (455)
Q Consensus 57 P~~~~q~~il~----~i~~~~~vii~~~TGSGKT 86 (455)
|+|+.|.++++ ++.+++..++.+|||+|||
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKT 43 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKT 43 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCcc
Confidence 45777777554 5668999999999999999
No 168
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.60 E-value=0.02 Score=57.59 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=21.9
Q ss_pred HHHHcCCeEEEEcCCCCCcccchhhhh
Q psy6094 67 DMVRNNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 67 ~~i~~~~~vii~~~TGSGKTtqlp~ll 93 (455)
.++..+.+++|+|+|||||||.+-.++
T Consensus 155 ~~v~~~~nili~G~tgSGKTTll~aL~ 181 (332)
T PRK13900 155 HAVISKKNIIISGGTSTGKTTFTNAAL 181 (332)
T ss_pred HHHHcCCcEEEECCCCCCHHHHHHHHH
Confidence 456788999999999999997775333
No 169
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.60 E-value=0.026 Score=57.06 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.5
Q ss_pred HHHHcCCeEEEEcCCCCCcccchh
Q psy6094 67 DMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 67 ~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
.++..+.+++|+|+|||||||.+-
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHHHH
Confidence 456788999999999999997765
No 170
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.46 E-value=0.03 Score=56.05 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=21.3
Q ss_pred HHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 65 VLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 65 il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..++..+.+++|+|+|||||||.+-
T Consensus 141 L~~~v~~~~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 141 IIAAVRAHRNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHH
Confidence 34467889999999999999996653
No 171
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.39 E-value=0.034 Score=47.30 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=20.1
Q ss_pred HHHHHHHHc--CCeEEEEcCCCCCcccch
Q psy6094 63 DAVLDMVRN--NQITVISGETGSGPPLHL 89 (455)
Q Consensus 63 ~~il~~i~~--~~~vii~~~TGSGKTtql 89 (455)
.++...+.. +..++|.|++|||||+.+
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 344555555 788999999999999443
No 172
>KOG1802|consensus
Probab=94.16 E-value=0.14 Score=54.84 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCCcc
Q psy6094 59 YQMRDAVLDMVRNNQITVISGETGSGPP 86 (455)
Q Consensus 59 ~~~q~~il~~i~~~~~vii~~~TGSGKT 86 (455)
-..|...+.+++++...+|+||+|+|||
T Consensus 412 N~SQ~~AV~~VL~rplsLIQGPPGTGKT 439 (935)
T KOG1802|consen 412 NASQSNAVKHVLQRPLSLIQGPPGTGKT 439 (935)
T ss_pred chHHHHHHHHHHcCCceeeecCCCCCce
Confidence 4568999999999999999999999999
No 173
>KOG0389|consensus
Probab=94.00 E-value=0.31 Score=53.16 Aligned_cols=114 Identities=13% Similarity=0.119 Sum_probs=85.5
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCc--eEEEEeCCCCccCCCCCCe
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGV--RKIVLATNIAETSITIDDI 261 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~--~kVivaTniae~gitI~~V 261 (455)
..+..||+|--=..-.+-|...|... ++..+.|-|+-+-.+|+.++..|-..+ .-.++||-...-||++-..
T Consensus 775 ~~G~RVLiFSQFTqmLDILE~~L~~l------~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~A 848 (941)
T KOG0389|consen 775 KKGDRVLIFSQFTQMLDILEVVLDTL------GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCA 848 (941)
T ss_pred hcCCEEEEeeHHHHHHHHHHHHHHhc------CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceeccccc
Confidence 45678999954333333344445544 488999999999999999999986543 4568899999999999988
Q ss_pred eEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCChhhh
Q psy6094 262 VYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPNDVL 318 (455)
Q Consensus 262 ~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~~~ 318 (455)
..||-.+.. |||-.. -+|.-|+-|.|.+.|=..|||+|+...
T Consensus 849 n~VIihD~d----FNP~dD-----------~QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 849 NTVIIHDID----FNPYDD-----------KQAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred ceEEEeecC----CCCccc-----------chhHHHHHhhCCcceeEEEEEEecCcH
Confidence 888853332 554444 457789999999999999999996644
No 174
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.92 E-value=0.022 Score=53.09 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.8
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|.+++|+||.||||||.+-
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLR 46 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLR 46 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 5689999999999999998876
No 175
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.91 E-value=0.037 Score=56.29 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=20.7
Q ss_pred CeEEEeecCCCChhhHhhhhcCCCCCce
Q psy6094 216 RFQIIPLHSMLPTVSQKSIFNTPPEGVR 243 (455)
Q Consensus 216 ~~~v~~lhs~l~~~~r~~v~~~~~~g~~ 243 (455)
...+..+|+.=...--.+.+..++.+.+
T Consensus 238 h~v~tTlHa~~~~~~i~Rl~~~~~~~~~ 265 (358)
T TIGR02524 238 HPVYTTLHSSGVAETIRRLVGSFPAEER 265 (358)
T ss_pred CcEEEeeccCCHHHHHHHHHHhCCccch
Confidence 4678889988777777777777776654
No 176
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=93.81 E-value=0.95 Score=49.51 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEcCCCCCcc
Q psy6094 56 LPSYQMRDAVLDMVRNNQITVISGETGSGPP 86 (455)
Q Consensus 56 lP~~~~q~~il~~i~~~~~vii~~~TGSGKT 86 (455)
+-.|+.|...+..+..|+ |+.+.||+|||
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKT 130 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKT 130 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcH
Confidence 566788999999999998 89999999999
No 177
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.78 E-value=0.19 Score=51.37 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=17.8
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
++++.+.||||-||||-++
T Consensus 203 ~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred CcEEEEECCCCCcHHHHHH
Confidence 7899999999999999877
No 178
>KOG0387|consensus
Probab=93.65 E-value=0.45 Score=52.02 Aligned_cols=112 Identities=11% Similarity=0.178 Sum_probs=90.1
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCc--eEEEEeCCCCccCCCCCCe
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGV--RKIVLATNIAETSITIDDI 261 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~--~kVivaTniae~gitI~~V 261 (455)
..+..+|+|-.++.-++-+...|.... ++..+.+-|.-+...|.....+|.++. .-.+++|-|..-|+++-+.
T Consensus 544 kqg~rvllFsqs~~mLdilE~fL~~~~-----~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgA 618 (923)
T KOG0387|consen 544 KQGDRVLLFSQSRQMLDILESFLRRAK-----GYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGA 618 (923)
T ss_pred hCCCEEEEehhHHHHHHHHHHHHHhcC-----CceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccC
Confidence 566789999999999998888888532 589999999999999999999998764 3457789999999999888
Q ss_pred eEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCCh
Q psy6094 262 VYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPN 315 (455)
Q Consensus 262 ~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~ 315 (455)
.-||-++ +.+||.+. .+|.-|+-|-|....=..|||.+.
T Consensus 619 nRVIIfD----PdWNPStD-----------~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 619 NRVIIFD----PDWNPSTD-----------NQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred ceEEEEC----CCCCCccc-----------hHHHHHHHhhcCccceEEEEEecC
Confidence 8777421 22444444 567789999999887899999993
No 179
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.58 E-value=0.027 Score=53.27 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.7
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|..+.|.||+||||||.+-
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLn 49 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLN 49 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4688999999999999998876
No 180
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.55 E-value=0.059 Score=52.46 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=18.7
Q ss_pred HHHHH-cCCeEEEEcCCCCCcccchh
Q psy6094 66 LDMVR-NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 66 l~~i~-~~~~vii~~~TGSGKTtqlp 90 (455)
..++. .+..++|+|+|||||||.+-
T Consensus 73 ~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 73 RKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 34444 34579999999999997664
No 181
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.50 E-value=0.035 Score=46.71 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=15.9
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
++.+++.|++||||||.+-
T Consensus 2 ~~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 5679999999999996553
No 182
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.48 E-value=0.059 Score=56.26 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=19.4
Q ss_pred HHHHHHHHc-CCeEEEEcCCCCCcccchh
Q psy6094 63 DAVLDMVRN-NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 63 ~~il~~i~~-~~~vii~~~TGSGKTtqlp 90 (455)
..+..++.. +-.++++|||||||||-+=
T Consensus 248 ~~~~~~~~~p~GliLvTGPTGSGKTTTLY 276 (500)
T COG2804 248 ARLLRLLNRPQGLILVTGPTGSGKTTTLY 276 (500)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 344444443 4478899999999996654
No 183
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.46 E-value=0.033 Score=54.43 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCCCcccchhhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
.--++|+|||||||||-++.+++
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId 147 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMID 147 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHH
Confidence 34688999999999988874444
No 184
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.98 E-value=0.067 Score=53.33 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=19.2
Q ss_pred HHHcCCeEEEEcCCCCCcccchh
Q psy6094 68 MVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 68 ~i~~~~~vii~~~TGSGKTtqlp 90 (455)
++....+++|+|.|||||||.+-
T Consensus 169 av~~r~NILisGGTGSGKTTlLN 191 (355)
T COG4962 169 AVGIRCNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHhhceeEEEeCCCCCCHHHHHH
Confidence 34555699999999999998876
No 185
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.98 E-value=0.05 Score=54.22 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=19.9
Q ss_pred HHHcCCeEEEEcCCCCCcccchh
Q psy6094 68 MVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 68 ~i~~~~~vii~~~TGSGKTtqlp 90 (455)
++..+.+++|+|+|||||||.+-
T Consensus 140 ~v~~~~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHHHH
Confidence 46688999999999999997664
No 186
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=92.78 E-value=0.051 Score=45.73 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.5
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
++++.|+||||||+.+.
T Consensus 2 ~~~i~~~~G~GKT~~~~ 18 (144)
T cd00046 2 DVLLAAPTGSGKTLAAL 18 (144)
T ss_pred CEEEECCCCCchhHHHH
Confidence 58999999999996654
No 187
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.75 E-value=0.2 Score=51.39 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=16.3
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
+++.+.|+||+||||.+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 578899999999998877
No 188
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=92.68 E-value=0.37 Score=54.56 Aligned_cols=110 Identities=13% Similarity=0.116 Sum_probs=89.2
Q ss_pred CEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCC--ceEEEEeCCCCccCCCCCCeeEEE
Q psy6094 188 PILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEG--VRKIVLATNIAETSITIDDIVYVV 265 (455)
Q Consensus 188 ~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g--~~kVivaTniae~gitI~~V~~VI 265 (455)
.+|+|.+-..-.+-+...+...+ +..+.++|+++.++|...+..|.++ ..-.+++|-.+..|++.-.-+.||
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~------~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi 786 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALG------IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVI 786 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcC------CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEE
Confidence 79999999998888888888763 6789999999999999999999875 567788888999999999999999
Q ss_pred eCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCChhhh
Q psy6094 266 DCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPNDVL 318 (455)
Q Consensus 266 D~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~~~ 318 (455)
- ||+.-+ |.-..+|..|+-|.|+..+=..|++.+++..
T Consensus 787 ~--------~d~~wn-------p~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ti 824 (866)
T COG0553 787 L--------FDPWWN-------PAVELQAIDRAHRIGQKRPVKVYRLITRGTI 824 (866)
T ss_pred E--------eccccC-------hHHHHHHHHHHHHhcCcceeEEEEeecCCcH
Confidence 6 554333 2333567778888888888889999886644
No 189
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.53 E-value=0.046 Score=46.46 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=13.8
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
++++.++|.|++|||||+.+-
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp -----EEEEE-TTSSHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHH
Confidence 356789999999999997776
No 190
>KOG0390|consensus
Probab=92.51 E-value=0.58 Score=51.71 Aligned_cols=106 Identities=12% Similarity=0.148 Sum_probs=76.8
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCC--Cc-eEEEEeCCCCccCCCCCCeeEEE
Q psy6094 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPE--GV-RKIVLATNIAETSITIDDIVYVV 265 (455)
Q Consensus 189 iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~--g~-~kVivaTniae~gitI~~V~~VI 265 (455)
-.|.+.....+.++.+.+..-. ++.++.|||.++..+|+.+++.|-+ +. .-.++||-...-||.+=+..-||
T Consensus 597 ~~v~Isny~~tldl~e~~~~~~-----g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRli 671 (776)
T KOG0390|consen 597 KSVLISNYTQTLDLFEQLCRWR-----GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLI 671 (776)
T ss_pred EEEEeccHHHHHHHHHHHHhhc-----CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEE
Confidence 3444556666666666665543 5899999999999999999888743 33 34456788888999987777777
Q ss_pred eCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCC
Q psy6094 266 DCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYP 314 (455)
Q Consensus 266 D~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t 314 (455)
= ||+.=+ |.--.+|.-|+-|-|...+=..|||.+
T Consensus 672 l--------~D~dWN-------Pa~d~QAmaR~~RdGQKk~v~iYrLla 705 (776)
T KOG0390|consen 672 L--------FDPDWN-------PAVDQQAMARAWRDGQKKPVYIYRLLA 705 (776)
T ss_pred E--------eCCCCC-------chhHHHHHHHhccCCCcceEEEEEeec
Confidence 4 444333 333356777999999888889999999
No 191
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.50 E-value=0.052 Score=50.37 Aligned_cols=17 Identities=35% Similarity=0.688 Sum_probs=14.8
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.++|+|+|||||||.+-
T Consensus 3 lilI~GptGSGKTTll~ 19 (198)
T cd01131 3 LVLVTGPTGSGKSTTLA 19 (198)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999997764
No 192
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=92.43 E-value=0.11 Score=48.12 Aligned_cols=31 Identities=16% Similarity=0.413 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHc-C-CeEEEEcCCCCCcccchh
Q psy6094 60 QMRDAVLDMVRN-N-QITVISGETGSGPPLHLD 90 (455)
Q Consensus 60 ~~q~~il~~i~~-~-~~vii~~~TGSGKTtqlp 90 (455)
.-|.+++..+.. + ++++|+|+.||||||.+-
T Consensus 4 ~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 4 EEQREAVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 457777887753 3 589999999999996554
No 193
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=92.41 E-value=0.16 Score=56.26 Aligned_cols=105 Identities=20% Similarity=0.186 Sum_probs=65.8
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCC---C
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITID---D 260 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~---~ 260 (455)
..++++||-..+.+.-+.+.+.|.+.+. .-..|...-..++-..+-+.-..| -|=+|||.|.||-||. +
T Consensus 427 ~~gqPvLvgT~sie~SE~ls~~L~~~~i------~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~ 498 (822)
T COG0653 427 EKGQPVLVGTVSIEKSELLSKLLRKAGI------PHNVLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGN 498 (822)
T ss_pred hcCCCEEEcCcceecchhHHHHHHhcCC------CceeeccccHHHHHHHHhhcCCCC--ccccccccccCCcccccCCC
Confidence 6789999999999999999999997652 112222222233333333322222 5789999999999983 3
Q ss_pred ee--------EEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 261 IV--------YVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 261 V~--------~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
.. +||=+........ =.|-+||+||.|. |..--+.|
T Consensus 499 ~~~V~~lGGL~VIgTERhESRRI------------------DnQLRGRsGRQGDpG~S~F~lS 543 (822)
T COG0653 499 PEFVMELGGLHVIGTERHESRRI------------------DNQLRGRAGRQGDPGSSRFYLS 543 (822)
T ss_pred HHHHHHhCCcEEEecccchhhHH------------------HHHhhcccccCCCcchhhhhhh
Confidence 22 4554443322222 2488999999886 75444444
No 194
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.37 E-value=0.059 Score=45.26 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=17.0
Q ss_pred eEEEEcCCCCCcccchhhhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFITLK 95 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll~e 95 (455)
+++|.|++||||||..-.|.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999766555443
No 195
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=92.35 E-value=0.5 Score=40.89 Aligned_cols=86 Identities=17% Similarity=0.271 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCcccchhhhhhhhcCCCC---------ChHHHHHhccC--CCCcCcc---hHHHHHHH
Q psy6094 62 RDAVLDMVRNNQITVISGETGSGPPLHLDFITLKRSETQQ---------YPNDVLNMLKD--PELEGVN---NDVIFSLL 127 (455)
Q Consensus 62 q~~il~~i~~~~~vii~~~TGSGKTtqlp~ll~e~~~~vg---------~p~~ll~~l~d--~~L~~~~---~D~ll~~l 127 (455)
++++-.+...+..|+|.|++||||++..-+|....+...+ .+.++++...+ -.+.++. .+....++
T Consensus 11 ~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~ 90 (138)
T PF14532_consen 11 RRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLPAELLEQAKGGTLYLKNIDRLSPEAQRRLL 90 (138)
T ss_dssp HHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTCHHHHHHCTTSEEEEECGCCS-HHHHHHHH
T ss_pred HHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCcHHHHHHcCCCEEEECChHHCCHHHHHHHH
Confidence 4455556677888999999999999644466553322222 24445555411 1222222 22222333
Q ss_pred HHHHHhcCCCCeEEEEccCC
Q psy6094 128 QHICTTQRPGAILVYCTYTF 147 (455)
Q Consensus 128 k~il~~~~~~~k~ilmSAT~ 147 (455)
..+-...+.+.|+|..|.+-
T Consensus 91 ~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 91 DLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp HHHHHCTTTTSEEEEEECC-
T ss_pred HHHHhcCCCCeEEEEEeCCC
Confidence 32221235678887766653
No 196
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.30 E-value=0.22 Score=55.13 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=61.1
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEE
Q psy6094 186 VVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVV 265 (455)
Q Consensus 186 ~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VI 265 (455)
++.+||.+|+.+-+..+.+.+++.. +..+..+||+++..+|.+++.....|..+|||+|.-+-. +.+.++.+||
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f-----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liV 263 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF-----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLII 263 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh-----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEE
Confidence 5679999999999999999998743 256889999999999999998888898999999974432 4567887666
No 197
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=92.20 E-value=0.054 Score=54.29 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=19.7
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|..+++.||+||||||.+-
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr 47 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLR 47 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 5678899999999999999876
No 198
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.16 E-value=0.079 Score=54.09 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=16.9
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.+..++|+|+|||||||.+-
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 55678999999999997765
No 199
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.14 E-value=0.084 Score=52.66 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.2
Q ss_pred HHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 65 VLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 65 il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..+++++++++++|+|||||||.+-
T Consensus 136 L~~~ie~~~siii~G~t~sGKTt~ln 161 (312)
T COG0630 136 LWLAIEARKSIIICGGTASGKTTLLN 161 (312)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHH
Confidence 67788999999999999999997764
No 200
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.05 E-value=0.12 Score=50.15 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCcccchhhh
Q psy6094 62 RDAVLDMVRNNQITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 62 q~~il~~i~~~~~vii~~~TGSGKTtqlp~l 92 (455)
.+.++..+..+..+++.|++|||||+.+-.+
T Consensus 11 ~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~l 41 (262)
T TIGR02640 11 TSRALRYLKSGYPVHLRGPAGTGKTTLAMHV 41 (262)
T ss_pred HHHHHHHHhcCCeEEEEcCCCCCHHHHHHHH
Confidence 4567788889999999999999999655433
No 201
>KOG2373|consensus
Probab=91.94 E-value=0.094 Score=52.09 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=24.7
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh
Q psy6094 63 DAVLDMVRNNQITVISGETGSGPPLHLD-FITL 94 (455)
Q Consensus 63 ~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~ 94 (455)
.+++.-.+.|..+|++|+|||||||.+. |-++
T Consensus 264 Nk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLD 296 (514)
T KOG2373|consen 264 NKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLD 296 (514)
T ss_pred HHHhccCCCCceEEEecCCCCCceeEehHhhHH
Confidence 3344444566789999999999999988 7776
No 202
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.88 E-value=0.061 Score=51.28 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.6
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|..+-|.|++||||||.+-
T Consensus 26 v~~GEfvsilGpSGcGKSTLLr 47 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLR 47 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999999876
No 203
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.86 E-value=0.07 Score=46.14 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=16.3
Q ss_pred eEEEEcCCCCCcccchhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll 93 (455)
++++.|++||||||.+-.+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 58999999999998765443
No 204
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=91.76 E-value=0.083 Score=53.45 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=17.3
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.+..++|+|+|||||||.+-
T Consensus 121 ~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred cCcEEEEECCCCCCHHHHHH
Confidence 46789999999999997765
No 205
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.57 E-value=0.085 Score=47.75 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=17.3
Q ss_pred CCeEEEEcCCCCCcccchhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~l 92 (455)
|+.+++.|++||||||++-.|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L 21 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKAL 21 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 567999999999999876533
No 206
>KOG1000|consensus
Probab=91.48 E-value=2.1 Score=44.69 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=75.9
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCC--ceEEEEeCCCCccCCCCCCe
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEG--VRKIVLATNIAETSITIDDI 261 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g--~~kVivaTniae~gitI~~V 261 (455)
.++...|||+.-..-.+.+...+++++ +-.+.+-|..+..+|...-+.|... .+--|++-..|..|+|....
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r~------vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa 563 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKRK------VGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAA 563 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHcC------CCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeecc
Confidence 456679999998888888888887764 6677888999999998887776543 45557788889999999999
Q ss_pred eEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEE
Q psy6094 262 VYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSET 310 (455)
Q Consensus 262 ~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~ 310 (455)
+.||=.-+. ++|.. | -+|.-|+-|.|.... ++.|
T Consensus 564 ~~VVFaEL~----wnPgv----L-------lQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 564 SVVVFAELH----WNPGV----L-------LQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred ceEEEEEec----CCCce----E-------EechhhhhhccccceeeEEE
Confidence 999954443 22221 1 134567777777666 4444
No 207
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.44 E-value=0.082 Score=48.69 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=19.5
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|.+++.+++.|+.||||||.+-
T Consensus 28 ia~ge~vv~lGpSGcGKTTLLn 49 (259)
T COG4525 28 IASGELVVVLGPSGCGKTTLLN 49 (259)
T ss_pred ecCCCEEEEEcCCCccHHHHHH
Confidence 5689999999999999998764
No 208
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.38 E-value=0.24 Score=50.49 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.2
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..++++++.|+||+||||.+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLV 224 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHH
Confidence 357789999999999998877
No 209
>PRK10436 hypothetical protein; Provisional
Probab=91.31 E-value=0.17 Score=53.28 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=16.6
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.+-.++|+|+|||||||.+-
T Consensus 217 ~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 217 PQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred cCCeEEEECCCCCChHHHHH
Confidence 55579999999999997654
No 210
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=91.29 E-value=2.4 Score=46.91 Aligned_cols=55 Identities=15% Similarity=0.014 Sum_probs=34.9
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCC
Q psy6094 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNI 251 (455)
Q Consensus 189 iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTni 251 (455)
++|-.|+..=+.+-++.+.....+ -++.+..+.|+++.++|..... ..|+++|+-
T Consensus 100 V~VvTpt~~LA~qdae~~~~l~~~--LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 100 VHVVTVNDYLAQRDAEWMGQVYRF--LGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 444445544444444433332211 1378899999999988887775 479999986
No 211
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=91.28 E-value=0.063 Score=46.17 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=19.2
Q ss_pred HcCCeEEEEcCCCCCcccchhhh
Q psy6094 70 RNNQITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp~l 92 (455)
..|+.+.|.|+.||||||.+-.+
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l 31 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKAL 31 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred cCCCEEEEEccCCCccccceeee
Confidence 46889999999999999877633
No 212
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.23 E-value=0.076 Score=44.22 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchhh
Q psy6094 69 VRNNQITVISGETGSGPPLHLDF 91 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp~ 91 (455)
+..++.+.+.|++||||||.+..
T Consensus 12 i~~ge~v~I~GpSGsGKSTLl~~ 34 (107)
T cd00820 12 VYGKVGVLITGDSGIGKTELALE 34 (107)
T ss_pred EcCCEEEEEEcCCCCCHHHHHHH
Confidence 34678899999999999987753
No 213
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.20 E-value=0.16 Score=53.75 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=16.0
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
+..++|+|+|||||||.+-
T Consensus 242 ~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 242 HGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 3478999999999997765
No 214
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.17 E-value=0.17 Score=54.83 Aligned_cols=26 Identities=27% Similarity=0.562 Sum_probs=19.2
Q ss_pred HHHHHH-cCCeEEEEcCCCCCcccchh
Q psy6094 65 VLDMVR-NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 65 il~~i~-~~~~vii~~~TGSGKTtqlp 90 (455)
+.+++. .+-.++|+|+|||||||.+-
T Consensus 308 l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 308 FLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 344444 45578899999999997764
No 215
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.13 E-value=0.31 Score=51.94 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=60.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEE
Q psy6094 185 LVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYV 264 (455)
Q Consensus 185 ~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~V 264 (455)
.++.+||-+|+..-+....+.+++.. ...+..+||+++..+|.+++.....|..+|||+|..+-. ..+.++..|
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f-----~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lI 97 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRF-----GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLI 97 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHh-----CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEE
Confidence 35689999999999999999998753 245778999999999999998888899999999975432 456777766
Q ss_pred E
Q psy6094 265 V 265 (455)
Q Consensus 265 I 265 (455)
|
T Consensus 98 I 98 (505)
T TIGR00595 98 I 98 (505)
T ss_pred E
Confidence 6
No 216
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.12 E-value=0.48 Score=46.55 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=16.3
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
++++++.|+||+||||.+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4588899999999997765
No 217
>PF05729 NACHT: NACHT domain
Probab=91.11 E-value=0.11 Score=45.84 Aligned_cols=18 Identities=44% Similarity=0.610 Sum_probs=15.7
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
++++|.|++|+||||.+.
T Consensus 1 r~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLR 18 (166)
T ss_pred CEEEEECCCCCChHHHHH
Confidence 478999999999997765
No 218
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.06 E-value=0.093 Score=48.98 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.6
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..++++-+.||+||||||.+-
T Consensus 30 i~~~~VTAlIGPSGcGKST~LR 51 (253)
T COG1117 30 IPKNKVTALIGPSGCGKSTLLR 51 (253)
T ss_pred ccCCceEEEECCCCcCHHHHHH
Confidence 4589999999999999998875
No 219
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=90.98 E-value=0.25 Score=56.21 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=23.1
Q ss_pred CHHHHHH----HHHHHHcCCeEEEEcCCCCCcc
Q psy6094 58 SYQMRDA----VLDMVRNNQITVISGETGSGPP 86 (455)
Q Consensus 58 ~~~~q~~----il~~i~~~~~vii~~~TGSGKT 86 (455)
..+.|.+ +.+++.+++++++.|+||+|||
T Consensus 246 ~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT 278 (850)
T TIGR01407 246 YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKT 278 (850)
T ss_pred cCHHHHHHHHHHHHHhccCCcEEEECCCCCchh
Confidence 3355665 4447778999999999999999
No 220
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=90.93 E-value=0.09 Score=47.93 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|..+.+.|+.||||||.+-
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~ 39 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVN 39 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999998875
No 221
>PRK14974 cell division protein FtsY; Provisional
Probab=90.68 E-value=0.46 Score=47.90 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=16.1
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
.++++.|++|+||||.+.
T Consensus 141 ~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 578899999999999877
No 222
>PRK14873 primosome assembly protein PriA; Provisional
Probab=90.68 E-value=0.49 Score=52.04 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=61.7
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeE
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVY 263 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~ 263 (455)
..++++||-+|....+..+.+.++.... .-.+..+||++++.+|.+.+.....|..+|||-|--|-- .-++|...
T Consensus 186 ~~Gk~vLvLvPEi~lt~q~~~rl~~~f~----~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-aP~~~LgL 260 (665)
T PRK14873 186 RAGRGALVVVPDQRDVDRLEAALRALLG----AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-APVEDLGL 260 (665)
T ss_pred HcCCeEEEEecchhhHHHHHHHHHHHcC----CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-eccCCCCE
Confidence 4577899999999999999999987641 135888999999999999999999999999999854321 23456665
Q ss_pred EE
Q psy6094 264 VV 265 (455)
Q Consensus 264 VI 265 (455)
||
T Consensus 261 II 262 (665)
T PRK14873 261 VA 262 (665)
T ss_pred EE
Confidence 54
No 223
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.64 E-value=0.12 Score=47.82 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=18.6
Q ss_pred HcCCeEEEEcCCCCCcccchhhh
Q psy6094 70 RNNQITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp~l 92 (455)
..++.+++.|++||||||.+-.+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l 25 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKAL 25 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 36789999999999999765433
No 224
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.62 E-value=0.51 Score=52.24 Aligned_cols=92 Identities=21% Similarity=0.307 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHcC---CeEEEEcCCCCCcccchh-hh-hhhhcCCCC---------ChHH------------------
Q psy6094 58 SYQMRDAVLDMVRNN---QITVISGETGSGPPLHLD-FI-TLKRSETQQ---------YPND------------------ 105 (455)
Q Consensus 58 ~~~~q~~il~~i~~~---~~vii~~~TGSGKTtqlp-~l-l~e~~~~vg---------~p~~------------------ 105 (455)
-|..+..+++.+.++ +.++|++|.|+||||.+. +. ...-+..|+ .|.+
T Consensus 20 ~~v~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~ 99 (894)
T COG2909 20 NYVVRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGD 99 (894)
T ss_pred cccccHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccH
Confidence 345566777777654 789999999999999998 53 122222233 1221
Q ss_pred --------------------HHHhc---cCC---CCcCcc---hHHHHHHHHHHHHhcCCCCeEEEEccCCCC
Q psy6094 106 --------------------VLNML---KDP---ELEGVN---NDVIFSLLQHICTTQRPGAILVYCTYTFMG 149 (455)
Q Consensus 106 --------------------ll~~l---~d~---~L~~~~---~D~ll~~lk~il~~~~~~~k~ilmSAT~~g 149 (455)
|+.+| .+| .+++|. ...+-.-++.+++..++++.+|+.|=+-|+
T Consensus 100 ~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 100 EAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 44444 234 234444 444556677888788899999998877643
No 225
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.57 E-value=1.7 Score=48.39 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=17.2
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
++++.+.|+||+||||.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTA 203 (767)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 5688999999999999877
No 226
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=90.43 E-value=0.23 Score=54.10 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCcc
Q psy6094 63 DAVLDMVRNNQITVISGETGSGPP 86 (455)
Q Consensus 63 ~~il~~i~~~~~vii~~~TGSGKT 86 (455)
+.+.+++.+++.+++.|+||||||
T Consensus 7 ~~i~~al~~~~~lliEA~TGtGKT 30 (636)
T TIGR03117 7 LNCLTSLRQKRIGMLEASTGVGKT 30 (636)
T ss_pred HHHHHHHhcCCeEEEEcCCCCcHH
Confidence 567777889999999999999999
No 227
>PF13173 AAA_14: AAA domain
Probab=90.18 E-value=0.14 Score=43.72 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=17.1
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
|+++++|.|+.|+||||.+-
T Consensus 1 n~~~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLK 20 (128)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 57899999999999996653
No 228
>PRK13764 ATPase; Provisional
Probab=90.16 E-value=0.19 Score=54.32 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=18.0
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..+.+++|+|+|||||||.+.
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHH
Confidence 456789999999999998776
No 229
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=90.16 E-value=0.23 Score=52.01 Aligned_cols=29 Identities=14% Similarity=0.350 Sum_probs=23.4
Q ss_pred HHHHHHHH-------HcCCeEEEEcCCCCCcccchh
Q psy6094 62 RDAVLDMV-------RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 62 q~~il~~i-------~~~~~vii~~~TGSGKTtqlp 90 (455)
|.++..++ ..|+++.++|+.||||||.+-
T Consensus 15 e~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 15 QTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 55555554 468999999999999999887
No 230
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=90.12 E-value=0.14 Score=46.16 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=12.4
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..+++++|.|+.|+|||+.+-
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~ 42 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLR 42 (185)
T ss_dssp -----EEE-B-TTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 356789999999999997665
No 231
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=90.09 E-value=0.14 Score=46.88 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=16.4
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
+..+++.|+.||||||.+-
T Consensus 2 g~~i~l~G~sGsGKsTl~~ 20 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLA 20 (186)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5689999999999997664
No 232
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=90.01 E-value=0.18 Score=43.80 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=21.5
Q ss_pred HHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 64 AVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 64 ~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
.+-..+..+.++++.|+.|+||||.+-
T Consensus 14 ~l~~~l~~~~~i~l~G~lGaGKTtl~~ 40 (133)
T TIGR00150 14 AFAKPLDFGTVVLLKGDLGAGKTTLVQ 40 (133)
T ss_pred HHHHhCCCCCEEEEEcCCCCCHHHHHH
Confidence 345556788999999999999996554
No 233
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=89.93 E-value=0.18 Score=49.41 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 60 QMRDAVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 60 ~~q~~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
+-|.+++.. .++.++|.|..||||||.+.
T Consensus 3 ~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 3 DEQRRIIRS--TEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp HHHHHHHHS---SSEEEEEE-TTSSHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEEeCCCCCchHHHH
Confidence 457778877 56678999999999996553
No 234
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=89.91 E-value=0.13 Score=43.30 Aligned_cols=20 Identities=30% Similarity=0.230 Sum_probs=15.7
Q ss_pred EEEEcCCCCCcccchhhhhh
Q psy6094 75 TVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 75 vii~~~TGSGKTtqlp~ll~ 94 (455)
++|.|.+||||||..-.|..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 57899999999987654443
No 235
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=89.90 E-value=0.24 Score=53.77 Aligned_cols=31 Identities=13% Similarity=0.392 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 60 QMRDAVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 60 ~~q~~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
..|.+.+.....+++++|+|.+||||||.+.
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~ 178 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVA 178 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH
Confidence 5688888888889999999999999998877
No 236
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.83 E-value=0.12 Score=49.37 Aligned_cols=46 Identities=26% Similarity=0.350 Sum_probs=29.0
Q ss_pred CCCChhhHhhhhcCCC----CCceEEEEeCCCCccCCCCCCeeEEEeCCC
Q psy6094 224 SMLPTVSQKSIFNTPP----EGVRKIVLATNIAETSITIDDIVYVVDCGK 269 (455)
Q Consensus 224 s~l~~~~r~~v~~~~~----~g~~kVivaTniae~gitI~~V~~VID~g~ 269 (455)
++|++.-+..+++... .+...||++|--.+.-..+-|-.+|++-|.
T Consensus 167 a~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~ 216 (235)
T COG1122 167 AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGK 216 (235)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCE
Confidence 6777777776655432 234567777766666666667777776554
No 237
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.81 E-value=0.18 Score=48.52 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=23.0
Q ss_pred CeEEEeecCCCChhhHhhhhcCCCCCceE
Q psy6094 216 RFQIIPLHSMLPTVSQKSIFNTPPEGVRK 244 (455)
Q Consensus 216 ~~~v~~lhs~l~~~~r~~v~~~~~~g~~k 244 (455)
.+....||+.-..+.-.+++.=||+..+.
T Consensus 226 HLcmaTLHAN~anQaleRIinffP~Err~ 254 (375)
T COG5008 226 HLCMATLHANNANQALERIINFFPEERRE 254 (375)
T ss_pred ceEEEEeccCCchHHHHHHHhhCcHHHhh
Confidence 58889999998888888888877776544
No 238
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=89.73 E-value=0.15 Score=46.09 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=15.9
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
++.++|.|++||||||.+-
T Consensus 1 ~~~~~i~G~sGsGKttl~~ 19 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLD 19 (179)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3578999999999997664
No 239
>PRK08233 hypothetical protein; Provisional
Probab=89.68 E-value=0.14 Score=46.25 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=18.0
Q ss_pred CCeEEEEcCCCCCcccchhhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
..++.|.|.+||||||+.-.|..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35788899999999988764443
No 240
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=89.63 E-value=0.16 Score=49.60 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=18.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+.+++-++++|+||||||..+-
T Consensus 30 ~~~~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHHHH
T ss_pred HHcCCcEEEECCCCCchhHHHH
Confidence 5688899999999999995443
No 241
>KOG0388|consensus
Probab=89.57 E-value=3.1 Score=45.36 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=89.3
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCc-eEEEEeCCCCccCCCCCCee
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGV-RKIVLATNIAETSITIDDIV 262 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~-~kVivaTniae~gitI~~V~ 262 (455)
..+..+|+|+.-..-++-+.+.|.-.+ +..+.|-|+....+|..+...+.... .-.+++|-....||++-..+
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~yr~------Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAAD 1115 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVYRG------YTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAAD 1115 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHhhc------cceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccc
Confidence 567789999998888888888887764 88999999999999999988876543 45578999999999999999
Q ss_pred EEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCChh
Q psy6094 263 YVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPND 316 (455)
Q Consensus 263 ~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~ 316 (455)
.||= ||..=+ |.--.+|.-|+-|-|.+..=.+|||.++.
T Consensus 1116 TViF--------YdSDWN-------PT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1116 TVIF--------YDSDWN-------PTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred eEEE--------ecCCCC-------cchhhHHHHHHHhccCccceeeeeecccc
Confidence 9994 443322 22234677899999999888999999954
No 242
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=89.54 E-value=0.14 Score=47.82 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.7
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.+.++.|.|++||||||.+-
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~ 24 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVAR 24 (207)
T ss_pred CeEEEEEECCCCCCHHHHHH
Confidence 46678899999999997664
No 243
>PF12846 AAA_10: AAA-like domain
Probab=89.44 E-value=0.16 Score=49.48 Aligned_cols=21 Identities=43% Similarity=0.537 Sum_probs=17.2
Q ss_pred CCeEEEEcCCCCCcccchhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~l 92 (455)
|..++|.|.|||||||.+-.+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l 21 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNL 21 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 457999999999999777633
No 244
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=89.41 E-value=0.14 Score=49.38 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.6
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+++.|.||.||||||.+-
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk 46 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLK 46 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHH
Confidence 4578999999999999999876
No 245
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=89.40 E-value=0.15 Score=43.02 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=14.8
Q ss_pred EEEEcCCCCCcccchhhhh
Q psy6094 75 TVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 75 vii~~~TGSGKTtqlp~ll 93 (455)
+++.|++|||||+.+-.+.
T Consensus 1 ill~G~~G~GKT~l~~~la 19 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALA 19 (132)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHH
Confidence 5899999999996654333
No 246
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=89.35 E-value=0.14 Score=46.85 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~ 36 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLL 36 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999997764
No 247
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=89.35 E-value=0.46 Score=52.95 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=32.0
Q ss_pred ccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 54 KKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 54 ~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
........|.+.+..+..+++++|+|.+||||||.+-
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~ 356 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITR 356 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHH
Confidence 3456677889999999999999999999999998776
No 248
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=89.30 E-value=0.31 Score=49.26 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=19.6
Q ss_pred HHHcCCeEEEEcCCCCCcccchh
Q psy6094 68 MVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 68 ~i~~~~~vii~~~TGSGKTtqlp 90 (455)
++..+.+++|+|+|||||||.+.
T Consensus 174 ~v~~~~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 174 IVAARLAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHhCCCeEEEECCCCCCHHHHHH
Confidence 45678899999999999997765
No 249
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=89.26 E-value=0.28 Score=53.45 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 60 QMRDAVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 60 ~~q~~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
..|.+.+.....+++++|+|++||||||.+.
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~ 185 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVA 185 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence 5677887778888999999999999998876
No 250
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=89.22 E-value=0.26 Score=44.17 Aligned_cols=30 Identities=13% Similarity=0.383 Sum_probs=22.2
Q ss_pred HHHHHHHcCCeEEEEcCCCCCcccchhhhhh
Q psy6094 64 AVLDMVRNNQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 64 ~il~~i~~~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
++.+.+ .++.+++.|++|.||||.+-.|+.
T Consensus 28 ~l~~~l-~~k~~vl~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 28 ELKELL-KGKTSVLLGQSGVGKSSLINALLP 57 (161)
T ss_dssp HHHHHH-TTSEEEEECSTTSSHHHHHHHHHT
T ss_pred HHHHHh-cCCEEEEECCCCCCHHHHHHHHHh
Confidence 344444 459999999999999987765543
No 251
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=89.04 E-value=5.1 Score=44.93 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=22.2
Q ss_pred CeEEEeecCCCC-hhhHhhhhcCCCCCceEEEEeCC
Q psy6094 216 RFQIIPLHSMLP-TVSQKSIFNTPPEGVRKIVLATN 250 (455)
Q Consensus 216 ~~~v~~lhs~l~-~~~r~~v~~~~~~g~~kVivaTn 250 (455)
++.+..+.|+++ .++++.+.. ..|+++|+
T Consensus 147 Gl~v~~i~g~~~~~~~r~~~y~------~dIvygT~ 176 (790)
T PRK09200 147 GLTVGLNFSDIDDASEKKAIYE------ADIIYTTN 176 (790)
T ss_pred CCeEEEEeCCCCcHHHHHHhcC------CCEEEECC
Confidence 378888899999 777776543 57899986
No 252
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=88.99 E-value=0.18 Score=43.58 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=12.8
Q ss_pred eEEEEcCCCCCcccc
Q psy6094 74 ITVISGETGSGPPLH 88 (455)
Q Consensus 74 ~vii~~~TGSGKTtq 88 (455)
.|++.|++|+|||+.
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 479999999999943
No 253
>COG3910 Predicted ATPase [General function prediction only]
Probab=88.94 E-value=0.21 Score=45.70 Aligned_cols=34 Identities=35% Similarity=0.557 Sum_probs=23.7
Q ss_pred cCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 55 KLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 55 ~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
.+|++.+-++-+ =-.-.+++|+|+.||||||.+-
T Consensus 22 slPa~r~l~~~L--eF~apIT~i~GENGsGKSTLLE 55 (233)
T COG3910 22 SLPAFRHLEERL--EFRAPITFITGENGSGKSTLLE 55 (233)
T ss_pred cchHHHhhhhhc--cccCceEEEEcCCCccHHHHHH
Confidence 455555544411 1256789999999999998775
No 254
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=88.91 E-value=0.2 Score=45.47 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=17.4
Q ss_pred CCeEEEEcCCCCCcccchhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll 93 (455)
...+++.|++||||||+.-.+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999998765443
No 255
>KOG1970|consensus
Probab=88.89 E-value=0.22 Score=52.46 Aligned_cols=29 Identities=14% Similarity=0.369 Sum_probs=22.6
Q ss_pred cCCeEEEEcCCCCCcccchhhhhhhhcCC
Q psy6094 71 NNQITVISGETGSGPPLHLDFITLKRSET 99 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll~e~~~~ 99 (455)
.+++++++||+||||||.+-.|..+.|.+
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~ 137 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQ 137 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCce
Confidence 67899999999999998886555544443
No 256
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=88.88 E-value=0.16 Score=47.11 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~ 44 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAK 44 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4688999999999999997765
No 257
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=88.87 E-value=0.16 Score=47.33 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~ 45 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLK 45 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999998765
No 258
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=88.84 E-value=0.23 Score=42.45 Aligned_cols=28 Identities=14% Similarity=0.479 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 63 DAVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 63 ~~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
+.+-..+..++++++.|+-|+||||.+-
T Consensus 6 ~~l~~~l~~g~vi~L~GdLGaGKTtf~r 33 (123)
T PF02367_consen 6 KKLAQILKPGDVILLSGDLGAGKTTFVR 33 (123)
T ss_dssp HHHHHHHSS-EEEEEEESTTSSHHHHHH
T ss_pred HHHHHhCCCCCEEEEECCCCCCHHHHHH
Confidence 4556667889999999999999996654
No 259
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.77 E-value=0.17 Score=47.17 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~ 44 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIR 44 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4678999999999999998765
No 260
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=88.74 E-value=0.18 Score=45.99 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=17.7
Q ss_pred eEEEEcCCCCCcccchhhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll~ 94 (455)
.++|.|++|||||||...|.+
T Consensus 2 riiilG~pGaGK~T~A~~La~ 22 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAK 22 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999875554
No 261
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=88.74 E-value=0.18 Score=43.88 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=13.3
Q ss_pred EEEEcCCCCCcccchh
Q psy6094 75 TVISGETGSGPPLHLD 90 (455)
Q Consensus 75 vii~~~TGSGKTtqlp 90 (455)
++|.|+|||||||.+-
T Consensus 2 i~i~GpsGsGKstl~~ 17 (137)
T cd00071 2 IVLSGPSGVGKSTLLK 17 (137)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999996543
No 262
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=88.72 E-value=0.17 Score=47.45 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.+.|+.||||||.+-
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk 31 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTR 31 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999998765
No 263
>PRK14530 adenylate kinase; Provisional
Probab=88.70 E-value=0.19 Score=47.19 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=18.1
Q ss_pred CCeEEEEcCCCCCcccchhhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
+..++|.|++||||||+.-.|..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999988754443
No 264
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=88.69 E-value=0.17 Score=47.45 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~ 48 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLN 48 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHH
Confidence 4578999999999999998765
No 265
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.63 E-value=0.19 Score=51.29 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=18.1
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..+.++++.|+||+||||.+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 347799999999999998776
No 266
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.61 E-value=0.17 Score=47.90 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|+.||||||.+-
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~ 49 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIR 49 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4688999999999999998765
No 267
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=88.60 E-value=0.38 Score=53.39 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=19.9
Q ss_pred HHHHHHHc-----CCeEEEEcCCCCCcc--cchh
Q psy6094 64 AVLDMVRN-----NQITVISGETGSGPP--LHLD 90 (455)
Q Consensus 64 ~il~~i~~-----~~~vii~~~TGSGKT--tqlp 90 (455)
++.+++.+ ++.++|.|+||+||| +.+|
T Consensus 36 ~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlP 69 (697)
T PRK11747 36 EVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLA 69 (697)
T ss_pred HHHHHHhcccccccceEEEECCCCcchhHHHHHH
Confidence 35555555 478999999999999 3355
No 268
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=88.59 E-value=0.21 Score=53.22 Aligned_cols=26 Identities=15% Similarity=0.424 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCCcccchhhhhhhhc
Q psy6094 72 NQITVISGETGSGPPLHLDFITLKRS 97 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll~e~~ 97 (455)
+++++++||+||||||.+-.|..+.|
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999988765555443
No 269
>PHA02244 ATPase-like protein
Probab=88.58 E-value=0.34 Score=49.25 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCCcccch
Q psy6094 61 MRDAVLDMVRNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 61 ~q~~il~~i~~~~~vii~~~TGSGKTtql 89 (455)
....+...+..+..+++.|+||||||+.+
T Consensus 108 ~~~ri~r~l~~~~PVLL~GppGtGKTtLA 136 (383)
T PHA02244 108 ETADIAKIVNANIPVFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 34556677888999999999999999544
No 270
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.58 E-value=0.89 Score=47.38 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=16.7
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
+.++++.|+||+||||.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLA 239 (424)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 6689999999999998765
No 271
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=88.53 E-value=0.58 Score=52.65 Aligned_cols=121 Identities=14% Similarity=0.193 Sum_probs=92.5
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchhhhhhhhcCCCCChHHHHHhccCCCCcCcchHHH
Q psy6094 44 RRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLDFITLKRSETQQYPNDVLNMLKDPELEGVNNDVI 123 (455)
Q Consensus 44 ~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp~ll~e~~~~vg~p~~ll~~l~d~~L~~~~~D~l 123 (455)
.++.+..+.---.+.|..|.-.-.-+..|+..-|+||||.||||..
T Consensus 69 e~~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg---------------------------------- 114 (1187)
T COG1110 69 EEFEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFG---------------------------------- 114 (1187)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHH----------------------------------
Confidence 3444555555556999999999999999999999999999999432
Q ss_pred HHHHHHHHHhcCCCCeEEEEccCCCCCccceEEeehhhhhhhhccCCCCChHHHHHHHHccCCCCEEEEcCCHHHHHHHH
Q psy6094 124 FSLLQHICTTQRPGAILVYCTYTFMGVSPMKVFFCKNVLQRLMKGVGANSPKRWVKLLRSMLVVPILVFLPGWDTINSLH 203 (455)
Q Consensus 124 l~~lk~il~~~~~~~k~ilmSAT~~g~~pv~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~~g~iLVFlp~~~ei~~l~ 203 (455)
++-.+ ++. ..++.+++-+||..-+.+++
T Consensus 115 --~~~sl-------------------------------------------------~~a-~kgkr~yii~PT~~Lv~Q~~ 142 (1187)
T COG1110 115 --LLMSL-------------------------------------------------YLA-KKGKRVYIIVPTTTLVRQVY 142 (1187)
T ss_pred --HHHHH-------------------------------------------------HHH-hcCCeEEEEecCHHHHHHHH
Confidence 11111 111 33567888889999999999
Q ss_pred HHHHhcCCCCC-CCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCC
Q psy6094 204 RSMCQSSFFNS-SRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNI 251 (455)
Q Consensus 204 ~~L~~~~~~~~-~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTni 251 (455)
+.|.......+ ....+. +||.|+.++++.+++++.+|..+|+|+|+-
T Consensus 143 ~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 143 ERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 88887653322 345556 999999999999999999999999999974
No 272
>PRK06526 transposase; Provisional
Probab=88.52 E-value=0.23 Score=48.09 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=18.9
Q ss_pred HHHcCCeEEEEcCCCCCcccchh
Q psy6094 68 MVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 68 ~i~~~~~vii~~~TGSGKTtqlp 90 (455)
-+..+.++++.|++|+|||+..-
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHH
Confidence 35677899999999999996654
No 273
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=88.42 E-value=0.18 Score=47.04 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~ 43 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLK 43 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4688999999999999998765
No 274
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=88.36 E-value=0.18 Score=46.39 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~ 44 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLR 44 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999997764
No 275
>PRK09183 transposase/IS protein; Provisional
Probab=88.36 E-value=0.23 Score=48.21 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..+.++++.|++|||||+...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH
Confidence 5678899999999999997655
No 276
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=88.36 E-value=0.17 Score=47.03 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~ 45 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLR 45 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 277
>PRK05541 adenylylsulfate kinase; Provisional
Probab=88.32 E-value=0.13 Score=46.52 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=20.1
Q ss_pred HHcCCeEEEEcCCCCCcccchhhhh
Q psy6094 69 VRNNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp~ll 93 (455)
...+.++++.|..||||||+.-.+.
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~ 28 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALY 28 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3567789999999999998876443
No 278
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=88.29 E-value=0.19 Score=47.97 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~ 46 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLR 46 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4688999999999999998765
No 279
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.27 E-value=0.19 Score=46.96 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~ 44 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLR 44 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4588999999999999998764
No 280
>PRK07261 topology modulation protein; Provisional
Probab=88.27 E-value=0.2 Score=45.32 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=15.0
Q ss_pred EEEEcCCCCCcccchhhh
Q psy6094 75 TVISGETGSGPPLHLDFI 92 (455)
Q Consensus 75 vii~~~TGSGKTtqlp~l 92 (455)
++|.|++||||||..-.|
T Consensus 3 i~i~G~~GsGKSTla~~l 20 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKL 20 (171)
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 789999999999876533
No 281
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=88.23 E-value=0.18 Score=46.68 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~ 42 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLN 42 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999998765
No 282
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=88.21 E-value=0.19 Score=46.85 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~ 46 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLK 46 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 5688999999999999998765
No 283
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=88.21 E-value=0.19 Score=45.60 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=18.8
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|++||||||.+-
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~ 46 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQ 46 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999997654
No 284
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=88.12 E-value=0.18 Score=47.24 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~ 44 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLK 44 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHH
Confidence 4678999999999999998765
No 285
>PLN02165 adenylate isopentenyltransferase
Probab=88.08 E-value=0.23 Score=49.73 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=16.6
Q ss_pred HcCCeEEEEcCCCCCcccch
Q psy6094 70 RNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtql 89 (455)
..+.+++|.|+||||||+..
T Consensus 41 ~~g~iivIiGPTGSGKStLA 60 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLS 60 (334)
T ss_pred CCCCEEEEECCCCCcHHHHH
Confidence 35678999999999999554
No 286
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=87.99 E-value=0.42 Score=46.08 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=16.8
Q ss_pred CCeEEEEcCCCCCcccchhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~l 92 (455)
...+++.|++||||||.+-.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNL 63 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHH
Confidence 347999999999999776533
No 287
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=87.98 E-value=0.51 Score=52.00 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=24.4
Q ss_pred ccCCCHHHHHHHH----HHHHcCCeEEEEcCCCCCcc
Q psy6094 54 KKLPSYQMRDAVL----DMVRNNQITVISGETGSGPP 86 (455)
Q Consensus 54 ~~lP~~~~q~~il----~~i~~~~~vii~~~TGSGKT 86 (455)
.....+..|.+++ +++.++..++|.|+||+|||
T Consensus 12 ~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKT 48 (654)
T COG1199 12 PGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKT 48 (654)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHH
Confidence 3444555666655 45567788999999999999
No 288
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=87.94 E-value=0.39 Score=52.71 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcC-CeEEEEcCCCCCcccchh
Q psy6094 59 YQMRDAVLDMVRNN-QITVISGETGSGPPLHLD 90 (455)
Q Consensus 59 ~~~q~~il~~i~~~-~~vii~~~TGSGKTtqlp 90 (455)
-..|.+.+..+.++ .+++|.|++|||||+.+.
T Consensus 159 n~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~ 191 (637)
T TIGR00376 159 NESQKEAVSFALSSKDLFLIHGPPGTGKTRTLV 191 (637)
T ss_pred CHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHH
Confidence 55677777776655 789999999999997766
No 289
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=87.93 E-value=0.23 Score=43.89 Aligned_cols=25 Identities=20% Similarity=0.511 Sum_probs=21.2
Q ss_pred HHcCCeEEEEcCCCCCcccchhhhh
Q psy6094 69 VRNNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp~ll 93 (455)
|..|.++-+.||.||||||.+.++.
T Consensus 25 ia~GeivtlMGPSGcGKSTLls~~~ 49 (213)
T COG4136 25 IAKGEIVTLMGPSGCGKSTLLSWMI 49 (213)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHH
Confidence 5678899999999999999987543
No 290
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=87.90 E-value=0.2 Score=43.88 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=18.7
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~ 44 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLK 44 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999997653
No 291
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=87.90 E-value=0.21 Score=47.41 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~ 44 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFN 44 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHH
Confidence 4688999999999999998765
No 292
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=87.87 E-value=1.5 Score=47.00 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=57.8
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCC-----CCccC-CCCCCee
Q psy6094 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATN-----IAETS-ITIDDIV 262 (455)
Q Consensus 189 iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTn-----iae~g-itI~~V~ 262 (455)
.||++||++-+..+++.+........ ++.+..++|+.+...|...++. | ..|||||+ ..+++ ++...|.
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~-~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~ 176 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLG-GLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVE 176 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcC-CccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcC
Confidence 99999999999998888887653211 5779999999999999877775 5 89999997 34444 8888998
Q ss_pred EEE
Q psy6094 263 YVV 265 (455)
Q Consensus 263 ~VI 265 (455)
++|
T Consensus 177 ~lV 179 (513)
T COG0513 177 TLV 179 (513)
T ss_pred EEE
Confidence 877
No 293
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=87.82 E-value=0.21 Score=45.25 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=17.7
Q ss_pred eEEEEcCCCCCcccchhhhhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFITLKR 96 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll~e~ 96 (455)
++++.|++||||||+.-.|.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999998876554433
No 294
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=87.80 E-value=0.2 Score=46.52 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~ 44 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMK 44 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999997765
No 295
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.80 E-value=0.21 Score=45.04 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=18.7
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~ 44 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIK 44 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999997654
No 296
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=87.80 E-value=0.98 Score=44.15 Aligned_cols=73 Identities=16% Similarity=0.291 Sum_probs=39.1
Q ss_pred CeEEEEcCCCCCcccchhhhhhhhcCCCC--ChHHHHHhc------cCCCCcCcc-------hHH---HHHHHHHHHHhc
Q psy6094 73 QITVISGETGSGPPLHLDFITLKRSETQQ--YPNDVLNML------KDPELEGVN-------NDV---IFSLLQHICTTQ 134 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~ll~e~~~~vg--~p~~ll~~l------~d~~L~~~~-------~D~---ll~~lk~il~~~ 134 (455)
+++||+|-.||||||++- +++..|.-+- .|-.|+..+ .+.....+- .++ +...+..+. ..
T Consensus 2 ~~vIiTGlSGaGKs~Al~-~lED~Gy~cvDNlP~~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~~~~~~~l~-~~ 79 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALR-ALEDLGYYCVDNLPPSLLPQLIELLAQSNSKIEKVAIVIDIRSREFFEDLFEALDELR-KK 79 (284)
T ss_pred eEEEEeCCCcCCHHHHHH-HHHhcCeeEEcCCcHHHHHHHHHHHHhcCCCCceEEEEEeCCChHHHHHHHHHHHHHH-hc
Confidence 479999999999997763 3332222211 255544433 222222222 222 233344444 44
Q ss_pred CCCCeEEEEccCC
Q psy6094 135 RPGAILVYCTYTF 147 (455)
Q Consensus 135 ~~~~k~ilmSAT~ 147 (455)
.-+.++|.+-|.-
T Consensus 80 ~~~~~ilFLdA~d 92 (284)
T PF03668_consen 80 GIDVRILFLDASD 92 (284)
T ss_pred CCceEEEEEECCh
Confidence 5677888877765
No 297
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=87.79 E-value=0.21 Score=46.77 Aligned_cols=22 Identities=18% Similarity=0.545 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~ 47 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLK 47 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 298
>PRK14527 adenylate kinase; Provisional
Probab=87.76 E-value=0.26 Score=45.24 Aligned_cols=25 Identities=16% Similarity=0.410 Sum_probs=19.8
Q ss_pred cCCeEEEEcCCCCCcccchhhhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFITLK 95 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll~e 95 (455)
.+..+++.|++||||||+.-.+.++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999887655443
No 299
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=87.76 E-value=0.44 Score=53.87 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.5
Q ss_pred HHHHHHHcCCeEEEEcCCCCCcc
Q psy6094 64 AVLDMVRNNQITVISGETGSGPP 86 (455)
Q Consensus 64 ~il~~i~~~~~vii~~~TGSGKT 86 (455)
++.+++.+++.+++.|+||||||
T Consensus 256 ~V~~~l~~~~~~~~eA~tGtGKT 278 (820)
T PRK07246 256 LVGEDFHDGPASFIEAQTGIGKT 278 (820)
T ss_pred HHHHHHhCCCcEEEECCCCCcHH
Confidence 46677788999999999999999
No 300
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.71 E-value=0.21 Score=47.46 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~ 44 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLR 44 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999998765
No 301
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.69 E-value=0.19 Score=47.15 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|+.||||||.+-
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~ 48 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLR 48 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999998764
No 302
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=87.68 E-value=0.21 Score=45.09 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=18.7
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~ 46 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLAR 46 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999997654
No 303
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=87.68 E-value=0.21 Score=46.51 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|+.||||||.+-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~ 46 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLR 46 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 304
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=87.66 E-value=0.27 Score=44.41 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=17.8
Q ss_pred CCeEEEEcCCCCCcccchhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll 93 (455)
+++++++|.+||||||..-.+.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~ 23 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQ 23 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 6789999999999997664443
No 305
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=87.61 E-value=0.36 Score=50.32 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCcccch
Q psy6094 62 RDAVLDMVRNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 62 q~~il~~i~~~~~vii~~~TGSGKTtql 89 (455)
.+.++.++..++++++.|++|+|||+.+
T Consensus 184 le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 184 IETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 4567888889999999999999999554
No 306
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=87.61 E-value=0.18 Score=45.94 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=19.7
Q ss_pred HHHcCCeEEEEcCCCCCcccchh
Q psy6094 68 MVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 68 ~i~~~~~vii~~~TGSGKTtqlp 90 (455)
.+..|..+.+.|+.||||||.+-
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~ 43 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVK 43 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHH
Confidence 35789999999999999997664
No 307
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=87.60 E-value=0.21 Score=47.43 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~ 45 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFS 45 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 308
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=87.58 E-value=0.22 Score=47.05 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+++.|.|+.||||||.+-
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~ 54 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLA 54 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 309
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=87.58 E-value=0.21 Score=46.52 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~ 44 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLR 44 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578999999999999998764
No 310
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.57 E-value=0.22 Score=45.25 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=18.8
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~ 44 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLR 44 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999997654
No 311
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=87.56 E-value=2.4 Score=44.20 Aligned_cols=83 Identities=17% Similarity=0.212 Sum_probs=70.1
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccC-----CCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETS-----ITI 258 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~g-----itI 258 (455)
...+.+|||+|+.-+--.+.+.|.+. ++....+|--.++.+-.++=..|-.|..+|+|-| ||- ..|
T Consensus 298 ~~~~~~LIfIPSYfDfVRlRN~lk~~------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~T---ER~HFfrRy~i 368 (442)
T PF06862_consen 298 SKMSGTLIFIPSYFDFVRLRNYLKKE------NISFVQISEYTSNSDISRARSQFFHGRKPILLYT---ERFHFFRRYRI 368 (442)
T ss_pred cCCCcEEEEecchhhhHHHHHHHHhc------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEE---hHHhhhhhcee
Confidence 56788999999999999999999965 4778888877777777777777889999999999 655 578
Q ss_pred CCeeEEEeCCCCccccc
Q psy6094 259 DDIVYVVDCGKTKMSNF 275 (455)
Q Consensus 259 ~~V~~VID~g~~k~~~y 275 (455)
.+|+.||=+|.|..+.|
T Consensus 369 rGi~~viFY~~P~~p~f 385 (442)
T PF06862_consen 369 RGIRHVIFYGPPENPQF 385 (442)
T ss_pred cCCcEEEEECCCCChhH
Confidence 99999999999887765
No 312
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.55 E-value=0.22 Score=46.78 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|..+.|.|+.||||||.+-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~ 44 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIK 44 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999998765
No 313
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=87.54 E-value=0.21 Score=47.93 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|++||||||.+-
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~ 50 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLR 50 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHH
Confidence 4688999999999999998765
No 314
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=87.52 E-value=0.24 Score=37.57 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=13.8
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
++.+.|+.||||||..-
T Consensus 1 ~i~i~G~~gsGKst~~~ 17 (69)
T cd02019 1 IIAITGGSGSGKSTVAK 17 (69)
T ss_pred CEEEECCCCCCHHHHHH
Confidence 36789999999997654
No 315
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=87.48 E-value=0.46 Score=47.41 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCC--eEEEEcCCCCCcccch
Q psy6094 62 RDAVLDMVRNNQ--ITVISGETGSGPPLHL 89 (455)
Q Consensus 62 q~~il~~i~~~~--~vii~~~TGSGKTtql 89 (455)
.+.+..++.+++ .+++.||+||||||.+
T Consensus 24 ~~~L~~~~~~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 24 VERLSRAVDSPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 344444555665 7999999999999655
No 316
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=87.48 E-value=0.29 Score=48.44 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=14.8
Q ss_pred cCCeEEEEcCCCCCccc
Q psy6094 71 NNQITVISGETGSGPPL 87 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTt 87 (455)
.+++++|.||||||||.
T Consensus 3 ~~~ii~I~GpTasGKS~ 19 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSN 19 (300)
T ss_pred CCcEEEEECCCccCHHH
Confidence 45689999999999993
No 317
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=87.47 E-value=0.41 Score=47.83 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=23.3
Q ss_pred HHHHHHHcCCeEEEEcCCCCCcccchhhhh
Q psy6094 64 AVLDMVRNNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 64 ~il~~i~~~~~vii~~~TGSGKTtqlp~ll 93 (455)
.++..+..++.+++.|++||||||.+-.+.
T Consensus 56 ~vl~~l~~~~~ilL~G~pGtGKTtla~~lA 85 (327)
T TIGR01650 56 AICAGFAYDRRVMVQGYHGTGKSTHIEQIA 85 (327)
T ss_pred HHHHHHhcCCcEEEEeCCCChHHHHHHHHH
Confidence 366667778889999999999996654333
No 318
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=87.43 E-value=0.22 Score=46.96 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~ 44 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLR 44 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 319
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=87.39 E-value=0.23 Score=47.23 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|..+.|.|+.||||||.+-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~ 44 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSK 44 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999998765
No 320
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=87.36 E-value=0.5 Score=54.26 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=21.9
Q ss_pred HHHHHHHcCCeEEEEcCCCCCcc--cchh
Q psy6094 64 AVLDMVRNNQITVISGETGSGPP--LHLD 90 (455)
Q Consensus 64 ~il~~i~~~~~vii~~~TGSGKT--tqlp 90 (455)
++.+++.+++.++|.|+||+||| +.+|
T Consensus 268 ~v~~~l~~~~~~~iEA~TGtGKTlaYLlp 296 (928)
T PRK08074 268 EVYTALRDSEHALIEAGTGTGKSLAYLLP 296 (928)
T ss_pred HHHHHHhcCCCEEEECCCCCchhHHHHHH
Confidence 46667778999999999999999 3355
No 321
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=87.31 E-value=0.23 Score=46.64 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~ 49 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLH 49 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 322
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=87.28 E-value=0.24 Score=44.53 Aligned_cols=22 Identities=18% Similarity=0.449 Sum_probs=18.7
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~ 45 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFR 45 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4588999999999999996653
No 323
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=87.27 E-value=0.23 Score=46.23 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.+.|+.||||||.+-
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~ 44 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLR 44 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999997764
No 324
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=87.23 E-value=0.25 Score=47.56 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk 43 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIK 43 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 325
>PRK14531 adenylate kinase; Provisional
Probab=87.20 E-value=0.28 Score=44.81 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=17.9
Q ss_pred CeEEEEcCCCCCcccchhhhhhh
Q psy6094 73 QITVISGETGSGPPLHLDFITLK 95 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~ll~e 95 (455)
+.+++.|++||||||+.-.|.+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999886555443
No 326
>PRK00698 tmk thymidylate kinase; Validated
Probab=87.16 E-value=0.28 Score=45.24 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=19.6
Q ss_pred cCCeEEEEcCCCCCcccchhhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
.+..++|.|..||||||++-.+.+
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~ 25 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKE 25 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999874443
No 327
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=87.16 E-value=0.24 Score=46.75 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~ 51 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLK 51 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 328
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=87.15 E-value=0.24 Score=46.33 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~ 49 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLR 49 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 329
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=87.14 E-value=0.25 Score=49.88 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|..+-+.||.||||||.+-
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR 49 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLR 49 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHH
Confidence 5678889999999999999876
No 330
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=87.13 E-value=1.3 Score=47.13 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=18.6
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..++++.+.|+||+||||.+.
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaa 368 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIA 368 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHH
Confidence 3467899999999999997765
No 331
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=87.12 E-value=0.23 Score=46.49 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~ 55 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLR 55 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHH
Confidence 4678999999999999997764
No 332
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.12 E-value=0.23 Score=47.56 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|++||||||.+-
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~ 47 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLR 47 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 333
>PRK10908 cell division protein FtsE; Provisional
Probab=87.08 E-value=0.24 Score=46.52 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~ 46 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLK 46 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4588999999999999998765
No 334
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.07 E-value=0.24 Score=47.04 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~ 45 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLR 45 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999998765
No 335
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=87.06 E-value=0.25 Score=46.54 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~ 49 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLAR 49 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4588999999999999998765
No 336
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=87.03 E-value=0.31 Score=45.65 Aligned_cols=20 Identities=45% Similarity=0.684 Sum_probs=17.4
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
++.++.+.|++||||||.+-
T Consensus 27 ~~~~~~i~G~NGsGKSTll~ 46 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILD 46 (213)
T ss_pred ccCEEEEECCCCCCHHHHHH
Confidence 46789999999999998764
No 337
>KOG1803|consensus
Probab=87.01 E-value=0.58 Score=49.80 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcC-CeEEEEcCCCCCcccchh
Q psy6094 60 QMRDAVLDMVRNN-QITVISGETGSGPPLHLD 90 (455)
Q Consensus 60 ~~q~~il~~i~~~-~~vii~~~TGSGKTtqlp 90 (455)
..|.+++....++ ...+|.||+|+|||+.+.
T Consensus 188 ~SQk~Av~~~~~~k~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 188 SSQKAAVSFAINNKDLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred HHHHHHHHHHhccCCceEeeCCCCCCceeeHH
Confidence 4677788877777 678899999999997766
No 338
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.95 E-value=0.24 Score=46.09 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~ 42 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLN 42 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4688999999999999998765
No 339
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.88 E-value=0.96 Score=43.10 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|.++.|.|+.||||||.+-
T Consensus 31 V~~Gei~~iiGgSGsGKStlLr 52 (263)
T COG1127 31 VPRGEILAILGGSGSGKSTLLR 52 (263)
T ss_pred ecCCcEEEEECCCCcCHHHHHH
Confidence 4578899999999999998876
No 340
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=86.88 E-value=0.25 Score=46.66 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~ 44 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFY 44 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999998765
No 341
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.86 E-value=0.26 Score=43.64 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=18.6
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+.+|+.+.|.|++||||||.+-
T Consensus 22 i~~g~~~~i~G~nGsGKStll~ 43 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLR 43 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999997654
No 342
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=86.79 E-value=0.25 Score=47.73 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|+.||||||.+-
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~ 45 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLN 45 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 343
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=86.78 E-value=0.27 Score=47.11 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|++||||||.+-
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~ 47 (250)
T PRK14262 26 IFKNQITAIIGPSGCGKTTLLR 47 (250)
T ss_pred ecCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 344
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=86.73 E-value=0.26 Score=47.59 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|++||||||.+-
T Consensus 36 i~~Ge~~~i~G~nGsGKSTLl~ 57 (260)
T PRK10744 36 IAKNQVTAFIGPSGCGKSTLLR 57 (260)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4688999999999999998765
No 345
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=86.71 E-value=0.26 Score=46.58 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.+.|+.||||||.+-
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~ 44 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLK 44 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4688999999999999998765
No 346
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=86.69 E-value=0.26 Score=46.22 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.5
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~ 48 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLK 48 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4689999999999999998765
No 347
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=86.69 E-value=0.27 Score=45.65 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=17.5
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.++++++.|+.||||||.+-
T Consensus 24 ~g~~~~ltGpNg~GKSTllr 43 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLR 43 (199)
T ss_pred CCcEEEEECCCCCChHHHHH
Confidence 46799999999999998765
No 348
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=86.69 E-value=0.26 Score=46.74 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|..+.|.|+.||||||.+-
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~ 53 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLH 53 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4678899999999999998765
No 349
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.66 E-value=0.26 Score=46.89 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~ 46 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLR 46 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 350
>PRK08118 topology modulation protein; Reviewed
Probab=86.65 E-value=0.28 Score=44.18 Aligned_cols=21 Identities=19% Similarity=0.223 Sum_probs=16.1
Q ss_pred eEEEEcCCCCCcccchhhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll~ 94 (455)
-++|.|+.||||||..-.|..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999976544443
No 351
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=86.65 E-value=0.26 Score=46.40 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~ 52 (224)
T TIGR02324 31 VNAGECVALSGPSGAGKSTLLK 52 (224)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4588999999999999998765
No 352
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=86.64 E-value=0.3 Score=44.45 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=17.2
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.|.++++.|++||||||..-
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~ 21 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGS 21 (176)
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 47789999999999997664
No 353
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=86.63 E-value=0.25 Score=45.80 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|..+.|.|+.||||||.+-
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~ 45 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLR 45 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999997764
No 354
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=86.56 E-value=0.26 Score=44.76 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.+.|+.||||||.+-
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~ 43 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLK 43 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999998765
No 355
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=86.55 E-value=0.27 Score=46.53 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~ 30 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCL 30 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999997764
No 356
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=86.54 E-value=0.26 Score=47.28 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|++||||||.+-
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~ 47 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKSTLLG 47 (253)
T ss_pred EeCCcEEEEECCCCCCHHHHHH
Confidence 4678999999999999998765
No 357
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.51 E-value=0.25 Score=45.44 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=18.9
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~ 51 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLD 51 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999997764
No 358
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=86.47 E-value=0.27 Score=43.98 Aligned_cols=22 Identities=27% Similarity=0.592 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.+.|+.||||||.+-
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~ 44 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMK 44 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999997764
No 359
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=86.46 E-value=0.26 Score=45.42 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=18.9
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|..+.|.|+.||||||.+-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~ 44 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLR 44 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999997764
No 360
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=86.45 E-value=0.28 Score=46.82 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~ 46 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLR 46 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 361
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=86.45 E-value=2.5 Score=41.81 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.8
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|.+.=|+|..|.||||.+-
T Consensus 29 I~~GeI~GIIG~SGAGKSTLiR 50 (339)
T COG1135 29 IPKGEIFGIIGYSGAGKSTLLR 50 (339)
T ss_pred EcCCcEEEEEcCCCCcHHHHHH
Confidence 5678889999999999999987
No 362
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.40 E-value=0.28 Score=44.21 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.+.|+.||||||.+-
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~ 46 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLK 46 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999997664
No 363
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=86.33 E-value=0.28 Score=45.95 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~ 46 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLK 46 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4678899999999999998765
No 364
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.32 E-value=0.28 Score=46.23 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~ 47 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLIN 47 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4588999999999999998765
No 365
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=86.29 E-value=0.28 Score=46.95 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|+.||||||.+-
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~ 45 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLR 45 (247)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4689999999999999998765
No 366
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=86.26 E-value=0.29 Score=46.39 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|..+.|.|+.||||||.+-
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~ 29 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLN 29 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 367
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=86.23 E-value=0.28 Score=45.38 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~ 45 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLK 45 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999997765
No 368
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=86.22 E-value=0.28 Score=48.23 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|++||||||.+-
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~ 51 (286)
T PRK13646 30 FEQGKYYAIVGQTGSGKSTLIQ 51 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 369
>PRK05480 uridine/cytidine kinase; Provisional
Probab=86.20 E-value=0.32 Score=45.30 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=15.9
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
...++.|.|++||||||..-
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~ 24 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVAS 24 (209)
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 34578899999999996653
No 370
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=86.19 E-value=0.81 Score=41.91 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHcCC--eEEEEcCCCCCcccc
Q psy6094 57 PSYQMRDAVLDMVRNNQ--ITVISGETGSGPPLH 88 (455)
Q Consensus 57 P~~~~q~~il~~i~~~~--~vii~~~TGSGKTtq 88 (455)
|+|..-..++..+.++. .++.-|+||||||+.
T Consensus 7 Pvf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~T 40 (186)
T cd01363 7 PVFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYT 40 (186)
T ss_pred cHHHHHHHHHHHHhCCcceeEEEECCCCCcceEe
Confidence 36666557777777764 467799999999933
No 371
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=86.16 E-value=0.29 Score=44.55 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=18.9
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~ 44 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAE 44 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999997764
No 372
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=86.12 E-value=0.29 Score=47.56 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|++||||||.+-
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~ 65 (268)
T PRK14248 44 IEKHAVTALIGPSGCGKSTFLR 65 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4588999999999999998765
No 373
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=86.12 E-value=0.31 Score=46.19 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.9
Q ss_pred HHcCCeEEEEcCCCCCcccch
Q psy6094 69 VRNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtql 89 (455)
|..|.++.|.|+.||||||.+
T Consensus 18 i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 18 IPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred cCCCcEEEEEcCCCCCHHHHH
Confidence 568899999999999999885
No 374
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.11 E-value=0.27 Score=45.63 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=18.9
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~ 51 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLK 51 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHH
Confidence 4678999999999999997654
No 375
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=86.10 E-value=0.4 Score=43.74 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=16.7
Q ss_pred HHHHcCCeEEEEcCCCCCcccchh
Q psy6094 67 DMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 67 ~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
+.+.+++++++.|++|+|||....
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~ 65 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAV 65 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHH
T ss_pred CCcccCeEEEEEhhHhHHHHHHHH
Confidence 345678999999999999995544
No 376
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=86.02 E-value=0.34 Score=44.35 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCCcccchhhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
|..++|.|..||||||+.-.|.+
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~ 25 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKK 25 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999774443
No 377
>PRK14738 gmk guanylate kinase; Provisional
Probab=86.01 E-value=0.35 Score=45.16 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=16.1
Q ss_pred cCCeEEEEcCCCCCcccch
Q psy6094 71 NNQITVISGETGSGPPLHL 89 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtql 89 (455)
.++.++|+|+.||||||.+
T Consensus 12 ~~~~ivi~GpsG~GK~tl~ 30 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVL 30 (206)
T ss_pred CCeEEEEECcCCCCHHHHH
Confidence 5678999999999999654
No 378
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=86.00 E-value=0.3 Score=46.93 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|++||||||.+-
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~ 51 (254)
T PRK14273 30 ILKNSITALIGPSGCGKSTFLR 51 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 5689999999999999998764
No 379
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=85.99 E-value=1.3 Score=49.08 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=63.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCC-CccCCCCCCeeE
Q psy6094 185 LVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNI-AETSITIDDIVY 263 (455)
Q Consensus 185 ~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTni-ae~gitI~~V~~ 263 (455)
.+..+++..|+..=+...++.+++... .-++.+..+||+++..++..++....+|...|||+|.- ....+...++.+
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~--~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~l 386 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLE--PLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGL 386 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHh--hcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccce
Confidence 456899999999999888888776431 12478999999999999999999888999999999973 344566788887
Q ss_pred EE
Q psy6094 264 VV 265 (455)
Q Consensus 264 VI 265 (455)
||
T Consensus 387 vV 388 (681)
T PRK10917 387 VI 388 (681)
T ss_pred EE
Confidence 76
No 380
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=85.98 E-value=8.1 Score=43.76 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=28.2
Q ss_pred HHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcc
Q psy6094 52 ARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPP 86 (455)
Q Consensus 52 ~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKT 86 (455)
.|+.|-..++--+++-.+.=++--|..++||+|||
T Consensus 75 ~~R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKT 109 (896)
T PRK13104 75 SLRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKT 109 (896)
T ss_pred HHHHcCCCcchHHHhhhhhhccCccccccCCCCch
Confidence 46677777777778888766666699999999999
No 381
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=85.97 E-value=0.31 Score=47.21 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|..+.|.|+.||||||.+-
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk 56 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLR 56 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999998765
No 382
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=85.80 E-value=0.31 Score=46.72 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~ 49 (252)
T PRK14239 28 FYPNEITALIGPSGSGKSTLLR 49 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 383
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=85.78 E-value=0.3 Score=52.32 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=18.9
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|+|++||||||.+-
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~ 379 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLM 379 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3578889999999999998764
No 384
>KOG0060|consensus
Probab=85.72 E-value=0.36 Score=51.18 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.1
Q ss_pred HHcCCeEEEEcCCCCCcccch
Q psy6094 69 VRNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtql 89 (455)
+.+|++++|+|++|||||..+
T Consensus 458 V~~g~~LLItG~sG~GKtSLl 478 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLL 478 (659)
T ss_pred ecCCCeEEEECCCCCchhHHH
Confidence 458999999999999999554
No 385
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=85.69 E-value=0.51 Score=42.20 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=22.7
Q ss_pred eEEEEcCCCCCcccchhhhhhhhcCCCCChHHHHHhc
Q psy6094 74 ITVISGETGSGPPLHLDFITLKRSETQQYPNDVLNML 110 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll~e~~~~vg~p~~ll~~l 110 (455)
++.|+|++||||||..--|.+..|-.+-..+.+.|.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~ 38 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREM 38 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHH
Confidence 4778999999999876555544443322233444444
No 386
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=85.68 E-value=0.32 Score=46.59 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~ 47 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLR 47 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999998765
No 387
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=85.65 E-value=0.32 Score=46.41 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~ 47 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIK 47 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 388
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=85.65 E-value=0.31 Score=47.47 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~ 53 (271)
T PRK13632 32 INEGEYVAILGHNGSGKSTISK 53 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4588999999999999998765
No 389
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=85.61 E-value=0.33 Score=46.94 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~ 46 (258)
T PRK13548 25 LRPGEVVAILGPNGAGKSTLLR 46 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 390
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.56 E-value=0.31 Score=46.46 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~ 45 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMK 45 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 391
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=85.52 E-value=0.34 Score=44.36 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.6
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..+..++|.|+.||||||.+-
T Consensus 25 l~~Ge~~~i~G~NG~GKTtLLR 46 (209)
T COG4133 25 LNAGEALQITGPNGAGKTTLLR 46 (209)
T ss_pred EcCCCEEEEECCCCCcHHHHHH
Confidence 4678999999999999998876
No 392
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=85.50 E-value=0.33 Score=44.15 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=16.4
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
+..+.+|.|++|+||||.+-
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ 37 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILE 37 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 34589999999999997765
No 393
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=85.48 E-value=0.32 Score=47.24 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|++||||||.+-
T Consensus 43 i~~Ge~~~I~G~nGsGKSTLl~ 64 (267)
T PRK14237 43 FEKNKITALIGPSGSGKSTYLR 64 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 394
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.46 E-value=0.33 Score=47.23 Aligned_cols=22 Identities=45% Similarity=0.605 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 47 i~~Ge~~~l~G~nGsGKSTLl~ 68 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLR 68 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4588999999999999998765
No 395
>KOG0347|consensus
Probab=85.43 E-value=1.6 Score=46.10 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=49.3
Q ss_pred CEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCC
Q psy6094 188 PILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATN 250 (455)
Q Consensus 188 ~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTn 250 (455)
-.|||.||++-+..+++.|..... ...+.+..+-|||+.+.|++++..- -.|||||+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~--~t~i~v~si~GGLavqKQqRlL~~~----p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAE--KTQIRVASITGGLAVQKQQRLLNQR----PDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhcc--ccCeEEEEeechhHHHHHHHHHhcC----CCEEEecc
Confidence 489999999999999998887653 4569999999999999999999873 46999997
No 396
>PRK06762 hypothetical protein; Provisional
Probab=85.42 E-value=0.36 Score=43.01 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=18.4
Q ss_pred CeEEEEcCCCCCcccchhhhhhhh
Q psy6094 73 QITVISGETGSGPPLHLDFITLKR 96 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~ll~e~ 96 (455)
..+++.|.+||||||..-.+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999998776554443
No 397
>PRK00131 aroK shikimate kinase; Reviewed
Probab=85.41 E-value=0.38 Score=42.86 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=17.8
Q ss_pred cCCeEEEEcCCCCCcccchhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll 93 (455)
.+..+++.|++||||||..-.+.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La 25 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLA 25 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999997654333
No 398
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=85.37 E-value=0.33 Score=47.26 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~ 45 (271)
T PRK13638 24 FSLSPVTGLVGANGCGKSTLFM 45 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999998765
No 399
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=85.31 E-value=0.34 Score=47.14 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~ 53 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAK 53 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4588999999999999998765
No 400
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=85.30 E-value=3.3 Score=39.69 Aligned_cols=70 Identities=10% Similarity=0.185 Sum_probs=40.3
Q ss_pred cCCCCEEEEcCC-HHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCcc-CCCCCCe
Q psy6094 184 MLVVPILVFLPG-WDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAET-SITIDDI 261 (455)
Q Consensus 184 ~~~g~iLVFlp~-~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~-gitI~~V 261 (455)
...|..++|-+- ...+++||+.+.-... + -..+||.+..- ++ ..|+++++|-.+.... --.||+|
T Consensus 177 k~~GatIifSsH~Me~vEeLCD~llmL~k---G---~~V~~G~v~~i--r~-----~~Gkk~~~ies~~s~eeL~~ipgi 243 (300)
T COG4152 177 KEEGATIIFSSHRMEHVEELCDRLLMLKK---G---QTVLYGTVEDI--RR-----SFGKKRLVIESDLSLEELANIPGI 243 (300)
T ss_pred HhcCCEEEEecchHHHHHHHhhhhheecC---C---ceEEeccHHHH--HH-----hcCCceEEEeccCchHHHhcCCCc
Confidence 567888999654 5789999987764321 1 11245654221 11 1367777776443332 3457777
Q ss_pred eEEEe
Q psy6094 262 VYVVD 266 (455)
Q Consensus 262 ~~VID 266 (455)
.-+..
T Consensus 244 ~~~~~ 248 (300)
T COG4152 244 LKITE 248 (300)
T ss_pred eeeee
Confidence 66663
No 401
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=85.28 E-value=0.34 Score=44.92 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~ 49 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLS 49 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4588999999999999997664
No 402
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=85.24 E-value=0.35 Score=45.93 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~ 46 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTK 46 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4588999999999999998765
No 403
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=85.24 E-value=0.35 Score=45.96 Aligned_cols=22 Identities=14% Similarity=0.379 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~ 47 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVS 47 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHH
Confidence 4588999999999999998765
No 404
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=85.22 E-value=0.34 Score=44.68 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~ 53 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLN 53 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578999999999999997664
No 405
>KOG1533|consensus
Probab=85.21 E-value=0.49 Score=44.76 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=18.2
Q ss_pred EEEEcCCCCCcccchh---hhhhhhcCCC
Q psy6094 75 TVISGETGSGPPLHLD---FITLKRSETQ 100 (455)
Q Consensus 75 vii~~~TGSGKTtqlp---~ll~e~~~~v 100 (455)
.+|+||+||||||..- -++..+|.++
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~ 33 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPV 33 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCce
Confidence 4789999999998765 4444455443
No 406
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=85.20 E-value=0.35 Score=46.37 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|+.||||||.+-
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~ 47 (250)
T PRK14240 26 IEENQVTALIGPSGCGKSTFLR 47 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 407
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=85.19 E-value=0.34 Score=46.38 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|++||||||.+-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~ 46 (246)
T PRK14269 25 IEQNKITALIGASGCGKSTFLR 46 (246)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 408
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=85.17 E-value=0.35 Score=47.09 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|..+.|.|+.||||||.+-
T Consensus 36 i~~Ge~~~l~G~nGsGKSTLl~ 57 (269)
T PRK14259 36 IPRGKVTALIGPSGCGKSTVLR 57 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999998765
No 409
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=85.17 E-value=0.35 Score=46.05 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.+.|+.||||||.+-
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~ 45 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLR 45 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 410
>PRK14737 gmk guanylate kinase; Provisional
Probab=85.15 E-value=0.41 Score=44.01 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=15.8
Q ss_pred cCCeEEEEcCCCCCcccch
Q psy6094 71 NNQITVISGETGSGPPLHL 89 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtql 89 (455)
.+..+|++|++||||||.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~ 21 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTII 21 (186)
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4678999999999999544
No 411
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=85.12 E-value=0.34 Score=46.68 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|+.||||||.+-
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~ 48 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVR 48 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578999999999999997764
No 412
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=85.11 E-value=0.34 Score=44.98 Aligned_cols=22 Identities=27% Similarity=0.367 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~ 52 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLIL 52 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 413
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=85.09 E-value=0.36 Score=42.08 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.2
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
+++|.|++||||||.+-
T Consensus 1 ~~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 1 LILVFGPTGSGKTTLAL 17 (165)
T ss_pred CeeEeCCCCCCHHHHHH
Confidence 36899999999997654
No 414
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=85.06 E-value=0.35 Score=46.43 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 28 i~~Ge~~~I~G~nGsGKSTLl~ 49 (251)
T PRK14244 28 IYKREVTAFIGPSGCGKSTFLR 49 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999997765
No 415
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=85.05 E-value=0.34 Score=46.48 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+++.+.|+.||||||.+-
T Consensus 19 i~~Gei~~l~G~nGsGKSTLl~ 40 (248)
T PRK03695 19 VRAGEILHLVGPNGAGKSTLLA 40 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999998765
No 416
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.04 E-value=0.35 Score=45.85 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|+.||||||.+-
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~ 45 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILR 45 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 417
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=85.03 E-value=0.35 Score=46.68 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|+.||||||.+-
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~ 56 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIK 56 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 418
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=84.95 E-value=0.36 Score=44.45 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=13.9
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
++.|.|++||||||..-
T Consensus 1 iigi~G~~GsGKSTl~~ 17 (198)
T cd02023 1 IIGIAGGSGSGKTTVAE 17 (198)
T ss_pred CEEEECCCCCCHHHHHH
Confidence 36789999999996654
No 419
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=84.94 E-value=0.36 Score=45.73 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.+.|+.||||||.+-
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~ 43 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLN 43 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4688999999999999998764
No 420
>PRK14532 adenylate kinase; Provisional
Probab=84.93 E-value=0.42 Score=43.62 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=17.7
Q ss_pred eEEEEcCCCCCcccchhhhhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFITLKR 96 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll~e~ 96 (455)
.+++.|++||||||+.-.|....
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 37899999999998876554433
No 421
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=84.91 E-value=0.37 Score=46.30 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|+.||||||.+-
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~ 48 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTVLR 48 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4688999999999999998765
No 422
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=84.91 E-value=0.37 Score=46.27 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~ 49 (252)
T PRK14255 28 FNQNEITALIGPSGCGKSTYLR 49 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999998765
No 423
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=84.91 E-value=0.37 Score=44.66 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=18.0
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..++.++++|+.||||||.+-
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~ 47 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLR 47 (202)
T ss_pred cCCeEEEEECCCCCccHHHHH
Confidence 356789999999999998876
No 424
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=84.88 E-value=0.37 Score=47.10 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.5
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+++.|.|+.||||||.+-
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~ 45 (272)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLK 45 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 5688999999999999998765
No 425
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=84.84 E-value=0.33 Score=43.74 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=18.9
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|..+.|+||.||||||.+-
T Consensus 26 v~~Ge~iaitGPSG~GKStllk 47 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLK 47 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHH
Confidence 4578889999999999997765
No 426
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=84.84 E-value=0.77 Score=42.84 Aligned_cols=26 Identities=15% Similarity=0.242 Sum_probs=17.5
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCcccc
Q psy6094 63 DAVLDMVRNNQITVISGETGSGPPLH 88 (455)
Q Consensus 63 ~~il~~i~~~~~vii~~~TGSGKTtq 88 (455)
..+.=+..++.++++.|+.|||||+.
T Consensus 13 rAL~iAAaG~h~lLl~GppGtGKTml 38 (206)
T PF01078_consen 13 RALEIAAAGGHHLLLIGPPGTGKTML 38 (206)
T ss_dssp HHHHHHHHCC--EEEES-CCCTHHHH
T ss_pred HHHHHHHcCCCCeEEECCCCCCHHHH
Confidence 34444555788999999999999955
No 427
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=84.82 E-value=0.35 Score=45.59 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.+.|+.||||||.+-
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk 51 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLD 51 (226)
T ss_pred EcCCeEEEEECCCCCCHHHHHH
Confidence 4578899999999999997765
No 428
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=84.82 E-value=0.37 Score=46.30 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~ 48 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLR 48 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 429
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=84.81 E-value=0.38 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 44 i~~Ge~~~i~G~NGsGKSTLl~ 65 (236)
T cd03267 44 IEKGEIVGFIGPNGAGKTTTLK 65 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4588999999999999998764
No 430
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=84.80 E-value=0.37 Score=46.48 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+++.|.|+.||||||.+-
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~ 48 (258)
T PRK14241 27 IEPRSVTAFIGPSGCGKSTVLR 48 (258)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4678999999999999998765
No 431
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=84.78 E-value=0.4 Score=42.11 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.2
Q ss_pred EEEEcCCCCCcccchhhh
Q psy6094 75 TVISGETGSGPPLHLDFI 92 (455)
Q Consensus 75 vii~~~TGSGKTtqlp~l 92 (455)
+++.|++||||||.+-.|
T Consensus 4 imliG~~g~GKTTL~q~L 21 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQAL 21 (143)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 789999999999877544
No 432
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=84.77 E-value=0.36 Score=46.35 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~ 49 (255)
T PRK11300 28 VREQEIVSLIGPNGAGKTTVFN 49 (255)
T ss_pred EcCCeEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 433
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=84.75 E-value=0.41 Score=39.75 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=13.5
Q ss_pred EEEEcCCCCCcccchh
Q psy6094 75 TVISGETGSGPPLHLD 90 (455)
Q Consensus 75 vii~~~TGSGKTtqlp 90 (455)
++|.|+.|+||||.+-
T Consensus 2 I~V~G~~g~GKTsLi~ 17 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIR 17 (119)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECcCCCCHHHHHH
Confidence 6899999999996554
No 434
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=84.75 E-value=0.33 Score=43.17 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.2
Q ss_pred EEEEcCCCCCcccchh
Q psy6094 75 TVISGETGSGPPLHLD 90 (455)
Q Consensus 75 vii~~~TGSGKTtqlp 90 (455)
+++.|++||||||..-
T Consensus 1 i~l~G~~GsGKSTla~ 16 (163)
T TIGR01313 1 FVLMGVAGSGKSTIAS 16 (163)
T ss_pred CEEECCCCCCHHHHHH
Confidence 4688999999997654
No 435
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=84.74 E-value=0.36 Score=46.42 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~ 50 (253)
T PRK14261 29 IPKNRVTALIGPSGCGKSTLLR 50 (253)
T ss_pred ECCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999998765
No 436
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=84.73 E-value=0.38 Score=45.27 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~ 44 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLK 44 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999997764
No 437
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=84.73 E-value=0.73 Score=45.00 Aligned_cols=18 Identities=22% Similarity=0.146 Sum_probs=16.2
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
+++++.|+|||||||.+-
T Consensus 112 ~~~~i~g~~g~GKttl~~ 129 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLR 129 (270)
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 588999999999998776
No 438
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=84.71 E-value=0.37 Score=46.99 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~ 51 (272)
T PRK15056 30 VPGGSIAALVGVNGSGKSTLFK 51 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998764
No 439
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=84.71 E-value=0.84 Score=46.24 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.3
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
++.+++.||+||||||..-
T Consensus 78 r~il~L~GPPGsGKStla~ 96 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVE 96 (361)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5789999999999996654
No 440
>PRK08356 hypothetical protein; Provisional
Probab=84.69 E-value=0.42 Score=44.07 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=16.6
Q ss_pred CeEEEEcCCCCCcccchhhh
Q psy6094 73 QITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~l 92 (455)
.+++++|++||||||+.-+|
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35788999999999887655
No 441
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=84.67 E-value=0.38 Score=45.03 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|+.||||||.+-
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~ 45 (218)
T cd03290 24 IPTGQLTMIVGQVGCGKSSLLL 45 (218)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999997765
No 442
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=84.67 E-value=1 Score=43.50 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=14.8
Q ss_pred CCeEEEEcCCCCCcccch
Q psy6094 72 NQITVISGETGSGPPLHL 89 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtql 89 (455)
...+++.|++||||||..
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 346899999999999554
No 443
>PRK08181 transposase; Validated
Probab=84.66 E-value=0.56 Score=45.75 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=18.9
Q ss_pred HHHcCCeEEEEcCCCCCcccchh
Q psy6094 68 MVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 68 ~i~~~~~vii~~~TGSGKTtqlp 90 (455)
-+..++++++.|++|+|||...-
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAA 124 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHH
Confidence 45678899999999999995543
No 444
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=84.66 E-value=0.35 Score=47.57 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+++.|.|+.||||||.+-
T Consensus 34 i~~Ge~~~l~G~nGsGKSTLl~ 55 (289)
T PRK13645 34 FKKNKVTCVIGTTGSGKSTMIQ 55 (289)
T ss_pred EeCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 445
>PRK04296 thymidine kinase; Provisional
Probab=84.59 E-value=0.38 Score=44.32 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=15.3
Q ss_pred CCeEEEEcCCCCCcccch
Q psy6094 72 NQITVISGETGSGPPLHL 89 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtql 89 (455)
+...++.|++|+||||.+
T Consensus 2 g~i~litG~~GsGKTT~~ 19 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTEL 19 (190)
T ss_pred cEEEEEECCCCCHHHHHH
Confidence 567899999999999665
No 446
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=84.59 E-value=0.38 Score=45.69 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|..+.|.|+.||||||.+-
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~ 49 (237)
T PRK11614 28 INQGEIVTLIGANGAGKTTLLG 49 (237)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4688999999999999998765
No 447
>PRK06217 hypothetical protein; Validated
Probab=84.58 E-value=0.4 Score=43.72 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.4
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
-++|.|.+||||||+.-
T Consensus 3 ~I~i~G~~GsGKSTla~ 19 (183)
T PRK06217 3 RIHITGASGSGTTTLGA 19 (183)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 38899999999997654
No 448
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=84.58 E-value=0.38 Score=46.71 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|+.||||||.+-
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLl~ 63 (267)
T PRK14235 42 IPEKTVTAFIGPSGCGKSTFLR 63 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 449
>PRK14528 adenylate kinase; Provisional
Probab=84.56 E-value=0.45 Score=43.63 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=16.7
Q ss_pred CeEEEEcCCCCCcccchhhhh
Q psy6094 73 QITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~ll 93 (455)
+.++|.|++||||||+.-.+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la 22 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILC 22 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 358999999999998865443
No 450
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=84.53 E-value=0.47 Score=44.43 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=16.3
Q ss_pred HcCCeEEEEcCCCCCcccch
Q psy6094 70 RNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtql 89 (455)
..+..+++.|++|||||+.+
T Consensus 36 ~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 35678999999999999544
No 451
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=84.52 E-value=0.38 Score=46.17 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~ 47 (250)
T PRK14245 26 IEEKSVVAFIGPSGCGKSTFLR 47 (250)
T ss_pred EeCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999998765
No 452
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=84.51 E-value=0.35 Score=45.14 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~ 42 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLN 42 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHH
Confidence 4578999999999999997764
No 453
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=84.48 E-value=0.38 Score=47.00 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|..+.|.|+.||||||.+-
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~ 51 (280)
T PRK13649 30 IEDGSYTAFIGHTGSGKSTIMQ 51 (280)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999998765
No 454
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=84.42 E-value=0.4 Score=45.90 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+++.|.|+.||||||.+-
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~ 47 (249)
T PRK14253 26 IPARQVTALIGPSGCGKSTLLR 47 (249)
T ss_pred ecCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999998765
No 455
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=84.42 E-value=0.39 Score=46.25 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~ 46 (255)
T PRK11231 25 LPTGKITALIGPNGCGKSTLLK 46 (255)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999998765
No 456
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=84.39 E-value=0.39 Score=45.37 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~ 66 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLR 66 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 457
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=84.37 E-value=0.43 Score=41.22 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=16.2
Q ss_pred eEEEEcCCCCCcccchhhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll~ 94 (455)
+++|+|++||||||..-.|..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999976654444
No 458
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=84.36 E-value=0.38 Score=46.38 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.5
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~ 50 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLN 50 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHH
Confidence 4688999999999999998765
No 459
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=84.35 E-value=0.43 Score=45.01 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~ 24 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLR 24 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHH
Confidence 5678999999999999997764
No 460
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=84.35 E-value=0.39 Score=45.76 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~ 47 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFY 47 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 461
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.34 E-value=0.45 Score=47.01 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=13.6
Q ss_pred cCCeEEEEcCCCCCcc
Q psy6094 71 NNQITVISGETGSGPP 86 (455)
Q Consensus 71 ~~~~vii~~~TGSGKT 86 (455)
+..++++.||||||||
T Consensus 96 ~KSNILLiGPTGsGKT 111 (408)
T COG1219 96 SKSNILLIGPTGSGKT 111 (408)
T ss_pred eeccEEEECCCCCcHH
Confidence 3446999999999999
No 462
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=84.32 E-value=0.39 Score=46.71 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~ 51 (269)
T PRK11831 30 VPRGKITAIMGPSGIGKTTLLR 51 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999998765
No 463
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.30 E-value=0.4 Score=45.36 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~ 46 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVN 46 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 464
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=84.29 E-value=2 Score=46.02 Aligned_cols=49 Identities=20% Similarity=0.399 Sum_probs=33.7
Q ss_pred HhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh----hhhh
Q psy6094 40 KLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD----FITL 94 (455)
Q Consensus 40 ~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp----~ll~ 94 (455)
...+.+.++..+. +-+-|++||. -..|..+||+|..||||||..- |++.
T Consensus 200 k~ss~~mrdIV~T-----IQkEQneIIR-~ek~~ilVVQGaAGSGKTtiALHRvAyLlY 252 (747)
T COG3973 200 KNSSAKMRDIVET-----IQKEQNEIIR-FEKNKILVVQGAAGSGKTTIALHRVAYLLY 252 (747)
T ss_pred hccchhHHHHHHH-----hhHhHHHHHh-ccCCCeEEEecCCCCCchhHHHHHHHHHHh
Confidence 3455666666554 2234777776 3567789999999999997633 7765
No 465
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=84.29 E-value=1.2 Score=49.38 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=30.4
Q ss_pred HHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc
Q psy6094 52 ARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH 88 (455)
Q Consensus 52 ~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq 88 (455)
.++.|-+++++-+++.++.-++..|+..+||+|||..
T Consensus 63 ~~R~lglrpydVQlig~l~l~~G~Iaem~TGeGKTLt 99 (762)
T TIGR03714 63 DKRVLGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLT 99 (762)
T ss_pred HHhhcCCCccHHHHHHHHHhcCCceeEecCCcchHHH
Confidence 3667777888888888887777789999999999943
No 466
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=84.29 E-value=0.39 Score=46.79 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|+.||||||.+-
T Consensus 47 i~~Ge~~~I~G~nGsGKSTLl~ 68 (271)
T PRK14238 47 IHENEVTAIIGPSGCGKSTYIK 68 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4688999999999999998765
No 467
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=84.28 E-value=0.4 Score=46.37 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~ 48 (262)
T PRK09984 27 IHHGEMVALLGPSGSGKSTLLR 48 (262)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 468
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=84.25 E-value=0.39 Score=46.58 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~ 51 (265)
T PRK10253 30 IPDGHFTAIIGPNGCGKSTLLR 51 (265)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 469
>PRK13975 thymidylate kinase; Provisional
Probab=84.23 E-value=0.47 Score=43.48 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCCcccchhhhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFITLK 95 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll~e 95 (455)
+..+++.|..||||||+.-.|.+.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999987754443
No 470
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=84.16 E-value=0.41 Score=45.06 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 37 i~~Ge~~~i~G~nGsGKSTLl~ 58 (226)
T cd03248 37 LHPGEVTALVGPSGSGKSTVVA 58 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4588999999999999998765
No 471
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.15 E-value=0.37 Score=44.88 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=17.0
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..+ .+.|.|+.||||||.+-
T Consensus 24 ~~g-~~~i~G~nGsGKSTLl~ 43 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMR 43 (211)
T ss_pred cCC-cEEEECCCCCCHHHHHH
Confidence 456 89999999999998765
No 472
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=84.13 E-value=0.4 Score=46.97 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|++||||||.+-
T Consensus 27 I~~Ge~~~IvG~nGsGKSTLl~ 48 (275)
T cd03289 27 ISPGQRVGLLGRTGSGKSTLLS 48 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 5688999999999999998765
No 473
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=84.13 E-value=0.41 Score=46.17 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|+.||||||.+-
T Consensus 35 i~~Ge~~~i~G~nGsGKSTLl~ 56 (258)
T PRK14268 35 IPKNSVTALIGPSGCGKSTFIR 56 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 474
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=84.12 E-value=0.41 Score=45.86 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~ 51 (252)
T CHL00131 30 INKGEIHAIMGPNGSGKSTLSK 51 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4678999999999999998765
No 475
>PRK07667 uridine kinase; Provisional
Probab=84.09 E-value=0.78 Score=42.29 Aligned_cols=16 Identities=31% Similarity=0.353 Sum_probs=13.5
Q ss_pred eEEEEcCCCCCcccch
Q psy6094 74 ITVISGETGSGPPLHL 89 (455)
Q Consensus 74 ~vii~~~TGSGKTtql 89 (455)
+|-|.|.+||||||..
T Consensus 19 iIgI~G~~gsGKStla 34 (193)
T PRK07667 19 ILGIDGLSRSGKTTFV 34 (193)
T ss_pred EEEEECCCCCCHHHHH
Confidence 6678999999999654
No 476
>PRK09087 hypothetical protein; Validated
Probab=84.02 E-value=0.77 Score=43.55 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=16.0
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
+..+++.|++|||||+.+-
T Consensus 44 ~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5569999999999996654
No 477
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=84.00 E-value=0.44 Score=50.30 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=17.5
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.++++.+.|+||+||||.+.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTA 274 (484)
T ss_pred CCcEEEEECCCCccHHHHHH
Confidence 46789999999999998876
No 478
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=84.00 E-value=0.41 Score=46.40 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~ 55 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLK 55 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998764
No 479
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=83.98 E-value=0.42 Score=46.66 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 43 i~~Ge~~~IiG~nGsGKSTLl~ 64 (274)
T PRK14265 43 IPAKKIIAFIGPSGCGKSTLLR 64 (274)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999998765
No 480
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=83.98 E-value=0.42 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|+.||||||.+-
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~ 48 (251)
T PRK14251 27 FEEKELTALIGPSGCGKSTFLR 48 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999997764
No 481
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=83.97 E-value=0.39 Score=47.76 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|..+.|.|++||||||.+-
T Consensus 30 i~~Ge~v~iiG~nGsGKSTLl~ 51 (305)
T PRK13651 30 INQGEFIAIIGQTGSGKTTFIE 51 (305)
T ss_pred EeCCCEEEEECCCCCcHHHHHH
Confidence 4578899999999999998764
No 482
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=83.96 E-value=0.43 Score=46.34 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 36 i~~Ge~~~i~G~NGsGKSTLl~ 57 (267)
T PRK15112 36 LREGQTLAIIGENGSGKSTLAK 57 (267)
T ss_pred ecCCCEEEEEcCCCCCHHHHHH
Confidence 4688999999999999998765
No 483
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=83.91 E-value=0.42 Score=46.37 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~ 55 (265)
T TIGR02769 34 IEEGETVGLLGRSGCGKSTLAR 55 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 484
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=83.88 E-value=0.42 Score=45.51 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.+.|+.||||||.+-
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~ 46 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMD 46 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999998765
No 485
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=83.87 E-value=0.41 Score=46.85 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+++.|.|+.||||||.+-
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~ 51 (279)
T PRK13635 30 VYEGEWVAIVGHNGSGKSTLAK 51 (279)
T ss_pred EcCCCEEEEECCCCCcHHHHHH
Confidence 4578999999999999998765
No 486
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=83.85 E-value=0.4 Score=46.93 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|+.||||||.+-
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~ 51 (279)
T PRK13650 30 VKQGEWLSIIGHNGSGKSTTVR 51 (279)
T ss_pred EeCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998765
No 487
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=83.85 E-value=0.5 Score=40.98 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.4
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
..+++.|++|+||||.+-
T Consensus 4 ~~i~~~G~~g~GKttl~~ 21 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLN 21 (168)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358899999999998775
No 488
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=83.84 E-value=0.4 Score=47.19 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|++||||||.+-
T Consensus 29 i~~Ge~v~i~G~nGsGKSTLl~ 50 (288)
T PRK13643 29 VKKGSYTALIGHTGSGKSTLLQ 50 (288)
T ss_pred EcCCCEEEEECCCCChHHHHHH
Confidence 4578999999999999997764
No 489
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=83.83 E-value=0.43 Score=45.39 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+++.|.|+.||||||.+-
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~ 44 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLR 44 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 5688999999999999997764
No 490
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=83.83 E-value=0.43 Score=45.98 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|..+.|.|+.||||||.+-
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~ 49 (257)
T PRK10619 28 ANAGDVISIIGSSGSGKSTFLR 49 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999998775
No 491
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=83.82 E-value=0.42 Score=48.09 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCeEEEee---cCCCChhhHhhh---hcCCCCCceEEEEeCCCCccCCCCCCeeEEEeC
Q psy6094 194 PGWDTINSLHRSMCQSSFFNSSRFQIIPL---HSMLPTVSQKSI---FNTPPEGVRKIVLATNIAETSITIDDIVYVVDC 267 (455)
Q Consensus 194 p~~~ei~~l~~~L~~~~~~~~~~~~v~~l---hs~l~~~~r~~v---~~~~~~g~~kVivaTniae~gitI~~V~~VID~ 267 (455)
.|...--.+++.|.... .++.+ -++|+...+..+ +.....+ ..||++|.-.+.-..+-|-.+|++-
T Consensus 228 gGqkqRl~LARAl~~~p-------~IlLLDEPts~LD~~~~~~i~~~i~~l~~~-~Tii~iTH~l~~i~~~~Driivl~~ 299 (329)
T PRK14257 228 GGQQQRLCIARAIALEP-------EVLLMDEPTSALDPIATAKIEELILELKKK-YSIIIVTHSMAQAQRISDETVFFYQ 299 (329)
T ss_pred HHHHHHHHHHHHHHhCC-------CEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 34444444566665543 23323 366666655443 3333344 6788888777766666677788876
Q ss_pred CCC
Q psy6094 268 GKT 270 (455)
Q Consensus 268 g~~ 270 (455)
|..
T Consensus 300 G~i 302 (329)
T PRK14257 300 GWI 302 (329)
T ss_pred CEE
Confidence 653
No 492
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=83.79 E-value=0.44 Score=43.26 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=15.6
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
.++.|+|+.||||||.+-
T Consensus 7 ~ii~ivG~sgsGKTTLi~ 24 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLK 24 (173)
T ss_pred eEEEEECCCCChHHHHHH
Confidence 368899999999998876
No 493
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=83.79 E-value=0.44 Score=44.12 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~ 44 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLR 44 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4678999999999999997765
No 494
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=83.73 E-value=0.43 Score=44.69 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~ 48 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLL 48 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999998765
No 495
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=83.69 E-value=0.44 Score=46.64 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|+.||||||.+-
T Consensus 33 i~~Ge~~~l~G~nGsGKSTLl~ 54 (280)
T PRK13633 33 VKKGEFLVILGRNGSGKSTIAK 54 (280)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999998765
No 496
>PRK03839 putative kinase; Provisional
Probab=83.69 E-value=0.49 Score=42.86 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=16.5
Q ss_pred eEEEEcCCCCCcccchhhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll~ 94 (455)
.+++.|.+||||||+...+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999987654443
No 497
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=83.68 E-value=0.87 Score=50.97 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHc-CCeEEEEcCCCCCcccchh
Q psy6094 56 LPSYQMRDAVLDMVRN-NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 56 lP~~~~q~~il~~i~~-~~~vii~~~TGSGKTtqlp 90 (455)
.....-|.+.+..+.. +++++|+|.+|+||||.+-
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~ 386 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK 386 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH
Confidence 4556778888888776 6899999999999998877
No 498
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=83.65 E-value=0.43 Score=45.77 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|+.||||||.+-
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~ 48 (251)
T PRK14249 27 FPERQITAIIGPSGCGKSTLLR 48 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4588999999999999998765
No 499
>PRK01184 hypothetical protein; Provisional
Probab=83.65 E-value=0.5 Score=42.96 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=16.8
Q ss_pred eEEEEcCCCCCcccchhhhhhhhc
Q psy6094 74 ITVISGETGSGPPLHLDFITLKRS 97 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll~e~~ 97 (455)
+++++|+.||||||+ ..++.+.|
T Consensus 3 ~i~l~G~~GsGKsT~-a~~~~~~g 25 (184)
T PRK01184 3 IIGVVGMPGSGKGEF-SKIAREMG 25 (184)
T ss_pred EEEEECCCCCCHHHH-HHHHHHcC
Confidence 688999999999985 33444444
No 500
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=83.64 E-value=0.47 Score=39.46 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=15.2
Q ss_pred EEEEcCCCCCcccchhhhh
Q psy6094 75 TVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 75 vii~~~TGSGKTtqlp~ll 93 (455)
+++.|.||+||||.+-.++
T Consensus 2 V~iiG~~~~GKSTlin~l~ 20 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALT 20 (116)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6889999999997765443
Done!