Query psy6094
Match_columns 455
No_of_seqs 303 out of 2783
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 17:28:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 1E-65 3.5E-70 565.7 30.6 402 36-447 73-605 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 1.1E-40 3.7E-45 365.6 20.9 367 37-413 10-553 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 4.1E-38 1.4E-42 344.6 23.8 325 42-388 10-490 (702)
4 2zj8_A DNA helicase, putative 100.0 6.2E-36 2.1E-40 328.2 21.4 352 37-402 3-527 (720)
5 3eiq_A Eukaryotic initiation f 100.0 5.2E-31 1.8E-35 268.9 11.5 257 36-316 41-387 (414)
6 3o8b_A HCV NS3 protease/helica 100.0 2E-31 6.8E-36 285.5 7.9 246 48-318 208-516 (666)
7 2db3_A ATP-dependent RNA helic 100.0 3.2E-30 1.1E-34 266.6 13.9 255 36-315 57-406 (434)
8 3fht_A ATP-dependent RNA helic 100.0 5.4E-30 1.9E-34 261.0 13.1 261 37-315 27-378 (412)
9 2j0s_A ATP-dependent RNA helic 100.0 1.5E-29 5.2E-34 258.3 12.3 258 36-317 38-384 (410)
10 3pey_A ATP-dependent RNA helic 100.0 2.2E-28 7.5E-33 247.2 20.2 262 36-315 6-355 (395)
11 2z83_A Helicase/nucleoside tri 100.0 3.9E-29 1.3E-33 260.4 14.0 231 63-316 12-313 (459)
12 1s2m_A Putative ATP-dependent 100.0 1.3E-28 4.6E-33 250.3 17.6 258 36-317 22-366 (400)
13 2whx_A Serine protease/ntpase/ 100.0 6.3E-30 2.1E-34 274.9 4.9 249 42-314 157-476 (618)
14 1hv8_A Putative ATP-dependent 100.0 2E-28 6.9E-33 245.0 15.5 255 37-316 8-345 (367)
15 3fmp_B ATP-dependent RNA helic 100.0 7.4E-30 2.5E-34 266.7 3.6 263 36-316 93-446 (479)
16 2i4i_A ATP-dependent RNA helic 100.0 3.5E-28 1.2E-32 248.4 15.0 257 37-317 17-384 (417)
17 1xti_A Probable ATP-dependent 100.0 6.8E-28 2.3E-32 243.9 16.4 256 36-315 9-356 (391)
18 2jlq_A Serine protease subunit 99.9 1.9E-28 6.6E-33 254.6 10.4 194 103-314 95-309 (451)
19 1yks_A Genome polyprotein [con 99.9 1.7E-27 5.9E-32 246.6 12.8 175 122-314 117-297 (440)
20 3i5x_A ATP-dependent RNA helic 99.9 1.7E-27 5.7E-32 253.7 11.7 112 184-316 337-449 (563)
21 3sqw_A ATP-dependent RNA helic 99.9 1.1E-27 3.9E-32 256.3 10.1 112 184-316 286-398 (579)
22 1fuu_A Yeast initiation factor 99.9 7.3E-28 2.5E-32 243.8 7.3 257 37-317 23-367 (394)
23 3l9o_A ATP-dependent RNA helic 99.9 2E-27 6.9E-32 269.9 11.4 252 54-315 181-596 (1108)
24 2z0m_A 337AA long hypothetical 99.9 4.4E-26 1.5E-30 225.6 16.5 242 43-314 2-321 (337)
25 2wv9_A Flavivirin protease NS2 99.9 1.3E-26 4.3E-31 251.0 13.6 228 69-314 238-531 (673)
26 3rc3_A ATP-dependent RNA helic 99.9 9.4E-27 3.2E-31 251.5 11.6 165 185-364 320-498 (677)
27 1oyw_A RECQ helicase, ATP-depe 99.9 2E-26 6.8E-31 243.6 9.1 249 43-316 10-343 (523)
28 2v1x_A ATP-dependent DNA helic 99.9 7.2E-26 2.5E-30 242.3 13.3 116 177-316 257-374 (591)
29 2v6i_A RNA helicase; membrane, 99.9 6.8E-26 2.3E-30 234.1 11.4 170 121-314 110-288 (431)
30 3fho_A ATP-dependent RNA helic 99.9 3.6E-27 1.2E-31 248.6 1.0 260 38-315 122-469 (508)
31 4a4z_A Antiviral helicase SKI2 99.9 3.4E-25 1.1E-29 249.6 13.2 128 177-314 327-490 (997)
32 3eaq_A Heat resistant RNA depe 99.9 5.1E-25 1.8E-29 206.0 10.9 160 174-357 19-211 (212)
33 2ykg_A Probable ATP-dependent 99.9 4.1E-25 1.4E-29 240.9 10.5 130 185-335 397-549 (696)
34 2xgj_A ATP-dependent RNA helic 99.9 3E-24 1E-28 241.9 17.4 129 177-315 334-498 (1010)
35 3oiy_A Reverse gyrase helicase 99.9 1.3E-24 4.3E-29 222.7 11.3 237 46-314 10-363 (414)
36 4f92_B U5 small nuclear ribonu 99.9 2.4E-24 8.2E-29 252.9 14.2 199 184-391 1153-1428(1724)
37 4f92_B U5 small nuclear ribonu 99.9 1.5E-24 5.2E-29 254.6 12.0 197 184-388 315-594 (1724)
38 3i32_A Heat resistant RNA depe 99.9 1.8E-24 6.1E-29 212.6 9.4 165 174-362 16-213 (300)
39 4a2p_A RIG-I, retinoic acid in 99.9 1.8E-23 6.1E-28 221.2 10.8 115 184-317 388-509 (556)
40 3tbk_A RIG-I helicase domain; 99.9 2.2E-22 7.5E-27 212.4 15.5 114 184-316 387-507 (555)
41 1wp9_A ATP-dependent RNA helic 99.9 2.1E-22 7E-27 207.7 13.7 110 184-317 359-476 (494)
42 4ddu_A Reverse gyrase; topoiso 99.9 4.7E-23 1.6E-27 234.1 6.9 212 44-271 65-388 (1104)
43 4gl2_A Interferon-induced heli 99.9 7.4E-22 2.5E-26 215.3 14.5 109 186-314 400-516 (699)
44 1gm5_A RECG; helicase, replica 99.9 1.2E-22 4.3E-27 222.5 5.6 117 177-314 567-695 (780)
45 4a2q_A RIG-I, retinoic acid in 99.9 2.6E-21 9E-26 214.3 16.1 115 184-317 629-750 (797)
46 1gku_B Reverse gyrase, TOP-RG; 99.9 7.7E-22 2.6E-26 223.8 10.7 199 53-271 54-353 (1054)
47 2eyq_A TRCF, transcription-rep 99.8 7.8E-21 2.7E-25 217.0 16.6 111 184-315 810-921 (1151)
48 4a2w_A RIG-I, retinoic acid in 99.8 7.4E-21 2.5E-25 213.7 15.2 114 184-316 629-749 (936)
49 1tf5_A Preprotein translocase 99.8 2.5E-20 8.6E-25 201.9 14.4 104 185-314 431-543 (844)
50 2rb4_A ATP-dependent RNA helic 99.8 3.5E-20 1.2E-24 167.6 8.3 122 177-316 25-147 (175)
51 2hjv_A ATP-dependent RNA helic 99.8 4E-20 1.4E-24 165.4 8.5 117 176-316 25-142 (163)
52 1fuk_A Eukaryotic initiation f 99.8 2.3E-20 8E-25 167.1 6.5 117 176-316 20-137 (165)
53 3i4u_A ATP-dependent RNA helic 99.8 1.7E-19 5.7E-24 174.1 10.4 105 337-448 7-131 (270)
54 1t5i_A C_terminal domain of A 99.8 8.8E-20 3E-24 164.7 7.2 116 176-315 21-137 (172)
55 2fwr_A DNA repair protein RAD2 99.8 9.7E-20 3.3E-24 189.6 8.1 113 177-318 340-456 (472)
56 2jgn_A DBX, DDX3, ATP-dependen 99.8 1.5E-19 5.1E-24 165.3 6.8 118 176-317 35-154 (185)
57 2p6n_A ATP-dependent RNA helic 99.8 1.9E-19 6.6E-24 165.4 5.7 115 177-316 46-161 (191)
58 1nkt_A Preprotein translocase 99.8 6.9E-18 2.4E-22 182.9 18.3 105 184-314 458-615 (922)
59 2fsf_A Preprotein translocase 99.8 3E-18 1E-22 185.3 14.5 105 184-314 439-581 (853)
60 2oca_A DAR protein, ATP-depend 99.8 3.2E-19 1.1E-23 187.5 6.2 105 185-314 347-453 (510)
61 2yjt_D ATP-dependent RNA helic 99.6 6E-20 2E-24 165.4 0.0 116 177-316 21-137 (170)
62 3h1t_A Type I site-specific re 99.7 5.8E-17 2E-21 173.5 8.4 104 184-306 437-545 (590)
63 1c4o_A DNA nucleotide excision 99.7 1.5E-16 5E-21 172.4 11.6 113 184-315 437-549 (664)
64 2d7d_A Uvrabc system protein B 99.7 1.3E-16 4.4E-21 172.8 10.0 113 184-315 443-555 (661)
65 3dmq_A RNA polymerase-associat 99.6 2E-15 6.9E-20 170.0 11.7 115 177-314 494-613 (968)
66 3jux_A Protein translocase sub 99.5 4.9E-14 1.7E-18 150.1 8.7 112 177-314 463-585 (822)
67 3llm_A ATP-dependent RNA helic 99.4 7.5E-13 2.6E-17 125.0 11.1 118 29-149 32-220 (235)
68 2w00_A HSDR, R.ECOR124I; ATP-b 99.2 7.4E-11 2.5E-15 132.8 16.4 110 186-314 537-707 (1038)
69 1z5z_A Helicase of the SNF2/RA 99.2 7.7E-12 2.6E-16 120.8 6.7 112 184-318 110-226 (271)
70 1z63_A Helicase of the SNF2/RA 99.0 2.7E-10 9.3E-15 119.0 6.6 111 184-317 339-454 (500)
71 3ber_A Probable ATP-dependent 98.9 2.4E-09 8.1E-14 101.8 9.6 63 28-90 36-98 (249)
72 1z3i_X Similar to RAD54-like; 98.9 1.6E-09 5.4E-14 117.0 8.4 109 184-316 414-528 (644)
73 3iuy_A Probable ATP-dependent 98.8 2.3E-08 7.8E-13 93.2 11.0 48 40-87 25-72 (228)
74 3fmo_B ATP-dependent RNA helic 98.8 9.7E-09 3.3E-13 100.4 8.4 114 36-149 93-279 (300)
75 1qde_A EIF4A, translation init 98.8 1.9E-08 6.4E-13 93.3 9.9 52 37-88 16-67 (224)
76 2gxq_A Heat resistant RNA depe 98.8 1.6E-08 5.4E-13 92.5 9.1 52 37-88 3-54 (207)
77 2pl3_A Probable ATP-dependent 98.8 1.5E-08 5.2E-13 94.9 9.0 52 37-88 27-78 (236)
78 3fe2_A Probable ATP-dependent 98.8 1.2E-08 4.2E-13 96.1 8.0 51 38-88 32-82 (242)
79 1vec_A ATP-dependent RNA helic 98.8 1.7E-08 5.7E-13 92.3 8.5 52 37-88 5-56 (206)
80 1q0u_A Bstdead; DEAD protein, 98.7 1.4E-08 4.7E-13 94.2 7.5 52 37-88 6-57 (219)
81 3mwy_W Chromo domain-containin 98.7 8.4E-09 2.9E-13 114.1 7.1 111 184-318 570-686 (800)
82 3bor_A Human initiation factor 98.7 2E-08 6.7E-13 94.5 7.8 53 37-89 32-84 (237)
83 1t6n_A Probable ATP-dependent 98.7 1.3E-08 4.6E-13 94.1 6.1 52 37-88 16-67 (220)
84 2oxc_A Probable ATP-dependent 98.7 4.4E-08 1.5E-12 91.5 9.2 52 37-88 26-77 (230)
85 3ly5_A ATP-dependent RNA helic 98.7 3.1E-08 1.1E-12 94.7 8.2 47 42-88 61-107 (262)
86 3dkp_A Probable ATP-dependent 98.6 1.7E-07 5.9E-12 88.1 11.3 51 38-88 32-82 (245)
87 1wrb_A DJVLGB; RNA helicase, D 98.4 1.8E-07 6E-12 88.6 3.8 49 40-88 28-76 (253)
88 2vl7_A XPD; helicase, unknown 97.9 4.9E-06 1.7E-10 87.8 4.2 116 184-312 382-518 (540)
89 3b6e_A Interferon-induced heli 97.8 1.8E-05 6E-10 72.2 5.0 39 52-90 28-66 (216)
90 2ipc_A Preprotein translocase 96.3 0.012 3.9E-07 64.6 9.7 30 57-88 79-108 (997)
91 2fz4_A DNA repair protein RAD2 95.3 0.0073 2.5E-07 56.2 2.9 34 56-89 92-125 (237)
92 1rif_A DAR protein, DNA helica 95.3 0.0058 2E-07 58.2 2.0 31 56-86 112-142 (282)
93 3b85_A Phosphate starvation-in 94.5 0.023 7.9E-07 51.9 3.7 34 57-90 7-40 (208)
94 3crv_A XPD/RAD3 related DNA he 94.1 0.028 9.5E-07 59.1 3.7 30 57-86 3-36 (551)
95 4a15_A XPD helicase, ATP-depen 93.8 0.059 2E-06 57.5 5.7 117 184-312 446-581 (620)
96 1w36_D RECD, exodeoxyribonucle 93.5 0.031 1.1E-06 59.4 3.0 32 60-91 152-183 (608)
97 3ec2_A DNA replication protein 93.4 0.043 1.5E-06 48.2 3.2 20 71-90 37-56 (180)
98 1kgd_A CASK, peripheral plasma 93.3 0.025 8.5E-07 50.0 1.5 20 71-90 4-23 (180)
99 4a15_A XPD helicase, ATP-depen 93.3 0.044 1.5E-06 58.4 3.7 23 64-86 14-36 (620)
100 2gza_A Type IV secretion syste 92.9 0.03 1E-06 55.6 1.6 23 68-90 171-193 (361)
101 3tr0_A Guanylate kinase, GMP k 92.9 0.027 9.3E-07 50.4 1.1 21 70-90 5-25 (205)
102 2eyu_A Twitching motility prot 92.9 0.021 7.1E-07 54.1 0.3 22 69-90 22-43 (261)
103 1znw_A Guanylate kinase, GMP k 92.8 0.033 1.1E-06 50.3 1.5 23 68-90 16-38 (207)
104 2oap_1 GSPE-2, type II secreti 92.7 0.043 1.5E-06 57.1 2.4 24 67-90 255-278 (511)
105 2vl7_A XPD; helicase, unknown 92.7 0.045 1.5E-06 57.4 2.6 30 57-86 7-40 (540)
106 2j41_A Guanylate kinase; GMP, 92.7 0.031 1E-06 50.0 1.1 22 69-90 3-24 (207)
107 4gp7_A Metallophosphoesterase; 92.4 0.022 7.4E-07 50.1 -0.3 21 70-90 7-27 (171)
108 2pt7_A CAG-ALFA; ATPase, prote 92.3 0.04 1.4E-06 54.0 1.4 23 68-90 167-189 (330)
109 1z6g_A Guanylate kinase; struc 92.2 0.039 1.3E-06 50.5 1.2 22 69-90 20-41 (218)
110 1zp6_A Hypothetical protein AT 92.1 0.025 8.7E-07 50.0 -0.2 24 69-92 6-29 (191)
111 1lvg_A Guanylate kinase, GMP k 92.1 0.039 1.3E-06 49.7 1.0 20 71-90 3-22 (198)
112 3tau_A Guanylate kinase, GMP k 91.9 0.048 1.6E-06 49.4 1.4 20 71-90 7-26 (208)
113 4b3f_X DNA-binding protein smu 91.8 0.083 2.8E-06 56.6 3.4 32 59-90 191-223 (646)
114 3lnc_A Guanylate kinase, GMP k 91.8 0.04 1.4E-06 50.6 0.8 24 69-92 24-47 (231)
115 3co5_A Putative two-component 91.7 0.072 2.5E-06 45.1 2.2 22 68-89 23-44 (143)
116 3n70_A Transport activator; si 91.6 0.073 2.5E-06 45.2 2.2 21 69-89 21-41 (145)
117 3umf_A Adenylate kinase; rossm 91.5 0.052 1.8E-06 49.9 1.2 41 69-109 26-66 (217)
118 3a00_A Guanylate kinase, GMP k 91.4 0.054 1.9E-06 48.0 1.2 19 72-90 1-19 (186)
119 3jvv_A Twitching mobility prot 91.2 0.051 1.8E-06 53.8 0.9 21 70-90 121-141 (356)
120 3ney_A 55 kDa erythrocyte memb 91.0 0.069 2.4E-06 48.3 1.5 20 71-90 18-37 (197)
121 2w58_A DNAI, primosome compone 91.0 0.13 4.3E-06 45.9 3.2 18 73-90 55-72 (202)
122 1jbk_A CLPB protein; beta barr 91.0 0.12 4E-06 44.8 2.9 27 64-90 33-61 (195)
123 3vaa_A Shikimate kinase, SK; s 90.8 0.073 2.5E-06 47.7 1.4 26 69-94 22-47 (199)
124 1njg_A DNA polymerase III subu 90.8 0.13 4.4E-06 46.3 3.2 27 64-90 34-63 (250)
125 1kht_A Adenylate kinase; phosp 90.8 0.074 2.5E-06 46.7 1.4 25 71-95 2-26 (192)
126 2kjq_A DNAA-related protein; s 90.8 0.093 3.2E-06 45.0 2.0 20 71-90 35-54 (149)
127 2ewv_A Twitching motility prot 90.7 0.05 1.7E-06 54.2 0.3 22 69-90 133-154 (372)
128 3e1s_A Exodeoxyribonuclease V, 90.7 0.11 3.9E-06 54.7 2.9 33 58-90 190-222 (574)
129 1s96_A Guanylate kinase, GMP k 90.6 0.077 2.6E-06 48.7 1.4 21 69-89 13-33 (219)
130 3tif_A Uncharacterized ABC tra 90.6 0.053 1.8E-06 50.4 0.3 22 69-90 28-49 (235)
131 1p9r_A General secretion pathw 90.6 0.12 4.2E-06 52.3 3.0 21 70-90 165-185 (418)
132 2p65_A Hypothetical protein PF 90.2 0.099 3.4E-06 45.3 1.7 19 72-90 43-61 (187)
133 4eun_A Thermoresistant glucoki 90.2 0.09 3.1E-06 47.1 1.4 24 70-93 27-50 (200)
134 2qor_A Guanylate kinase; phosp 90.1 0.082 2.8E-06 47.5 1.2 21 70-90 10-30 (204)
135 3sr0_A Adenylate kinase; phosp 90.0 0.097 3.3E-06 47.6 1.6 24 74-97 2-25 (206)
136 3lw7_A Adenylate kinase relate 90.0 0.086 2.9E-06 45.3 1.1 20 73-92 2-21 (179)
137 3c8u_A Fructokinase; YP_612366 90.0 0.089 3E-06 47.5 1.2 21 70-90 20-40 (208)
138 2gk6_A Regulator of nonsense t 89.9 0.16 5.4E-06 54.2 3.3 32 59-90 182-213 (624)
139 2cbz_A Multidrug resistance-as 89.9 0.067 2.3E-06 49.7 0.3 22 69-90 28-49 (237)
140 2ehv_A Hypothetical protein PH 89.8 0.067 2.3E-06 49.2 0.3 23 68-90 26-48 (251)
141 1zd8_A GTP:AMP phosphotransfer 89.7 0.099 3.4E-06 47.8 1.3 24 70-93 5-28 (227)
142 2pcj_A ABC transporter, lipopr 89.5 0.07 2.4E-06 49.1 0.1 22 69-90 27-48 (224)
143 1kag_A SKI, shikimate kinase I 89.4 0.1 3.4E-06 45.2 1.1 19 72-90 4-22 (173)
144 2bwj_A Adenylate kinase 5; pho 89.2 0.15 5.2E-06 45.0 2.2 27 68-94 8-34 (199)
145 3gfo_A Cobalt import ATP-bindi 89.2 0.078 2.7E-06 50.5 0.2 22 69-90 31-52 (275)
146 1htw_A HI0065; nucleotide-bind 89.0 0.16 5.4E-06 44.1 2.0 21 70-90 31-51 (158)
147 1sgw_A Putative ABC transporte 89.0 0.076 2.6E-06 48.6 -0.0 22 69-90 32-53 (214)
148 3kb2_A SPBC2 prophage-derived 88.9 0.12 4.2E-06 44.4 1.3 21 74-94 3-23 (173)
149 1knq_A Gluconate kinase; ALFA/ 88.9 0.1 3.4E-06 45.4 0.7 23 71-93 7-29 (175)
150 2chg_A Replication factor C sm 88.9 0.22 7.6E-06 44.2 3.1 16 74-89 40-55 (226)
151 1g6h_A High-affinity branched- 88.9 0.086 2.9E-06 49.6 0.3 22 69-90 30-51 (257)
152 2ff7_A Alpha-hemolysin translo 88.9 0.086 3E-06 49.3 0.3 22 69-90 32-53 (247)
153 3trf_A Shikimate kinase, SK; a 88.9 0.13 4.4E-06 45.1 1.4 23 72-94 5-27 (185)
154 1b0u_A Histidine permease; ABC 88.8 0.089 3E-06 49.7 0.3 22 69-90 29-50 (262)
155 2pze_A Cystic fibrosis transme 88.8 0.087 3E-06 48.7 0.3 22 69-90 31-52 (229)
156 2ghi_A Transport protein; mult 88.7 0.092 3.1E-06 49.5 0.3 22 69-90 43-64 (260)
157 1ji0_A ABC transporter; ATP bi 88.7 0.091 3.1E-06 48.9 0.3 22 69-90 29-50 (240)
158 2v54_A DTMP kinase, thymidylat 88.6 0.14 4.7E-06 45.6 1.5 24 71-94 3-26 (204)
159 1ly1_A Polynucleotide kinase; 88.6 0.13 4.3E-06 44.7 1.1 22 73-94 3-24 (181)
160 3bos_A Putative DNA replicatio 88.6 0.26 8.8E-06 44.6 3.3 19 71-89 51-69 (242)
161 1mv5_A LMRA, multidrug resista 88.5 0.08 2.7E-06 49.3 -0.2 22 69-90 25-46 (243)
162 2c95_A Adenylate kinase 1; tra 88.5 0.15 5.2E-06 44.9 1.7 25 69-93 6-30 (196)
163 4g1u_C Hemin import ATP-bindin 88.5 0.094 3.2E-06 49.7 0.2 22 69-90 34-55 (266)
164 4a74_A DNA repair and recombin 88.4 0.078 2.7E-06 48.1 -0.4 22 69-90 22-43 (231)
165 1qhx_A CPT, protein (chloramph 88.4 0.15 5.1E-06 44.3 1.5 22 72-93 3-24 (178)
166 3asz_A Uridine kinase; cytidin 88.4 0.12 4.1E-06 46.5 0.9 20 70-89 4-23 (211)
167 3cm0_A Adenylate kinase; ATP-b 88.4 0.1 3.5E-06 45.7 0.4 24 71-94 3-26 (186)
168 2d2e_A SUFC protein; ABC-ATPas 88.3 0.098 3.4E-06 49.0 0.3 22 69-90 26-47 (250)
169 1vpl_A ABC transporter, ATP-bi 88.3 0.1 3.4E-06 49.2 0.3 22 69-90 38-59 (256)
170 2olj_A Amino acid ABC transpor 88.3 0.1 3.4E-06 49.4 0.3 22 69-90 47-68 (263)
171 1zuh_A Shikimate kinase; alpha 88.3 0.14 4.9E-06 44.2 1.3 22 72-93 7-28 (168)
172 2zu0_C Probable ATP-dependent 88.2 0.1 3.5E-06 49.4 0.3 22 69-90 43-64 (267)
173 2bdt_A BH3686; alpha-beta prot 88.1 0.11 3.7E-06 45.9 0.4 22 72-93 2-23 (189)
174 3exa_A TRNA delta(2)-isopenten 88.1 0.13 4.4E-06 50.0 0.9 19 72-90 3-21 (322)
175 2ixe_A Antigen peptide transpo 88.0 0.11 3.7E-06 49.4 0.3 22 69-90 42-63 (271)
176 2v9p_A Replication protein E1; 88.0 0.12 4.1E-06 50.0 0.7 21 69-89 123-143 (305)
177 3iij_A Coilin-interacting nucl 88.0 0.15 5E-06 44.6 1.2 24 70-93 9-32 (180)
178 2yz2_A Putative ABC transporte 87.9 0.11 3.8E-06 49.1 0.3 22 69-90 30-51 (266)
179 2rhm_A Putative kinase; P-loop 87.9 0.14 4.6E-06 45.1 0.9 27 71-97 4-30 (193)
180 2pez_A Bifunctional 3'-phospho 87.7 0.14 4.9E-06 44.7 1.0 22 71-92 4-25 (179)
181 2nq2_C Hypothetical ABC transp 87.7 0.11 3.9E-06 48.7 0.3 22 69-90 28-49 (253)
182 2vp4_A Deoxynucleoside kinase; 87.7 0.14 4.9E-06 47.0 1.0 25 70-94 18-42 (230)
183 2ihy_A ABC transporter, ATP-bi 87.7 0.11 3.9E-06 49.5 0.3 22 69-90 44-65 (279)
184 1tev_A UMP-CMP kinase; ploop, 87.6 0.15 5E-06 44.9 0.9 22 72-93 3-24 (196)
185 2wjy_A Regulator of nonsense t 87.6 0.27 9.3E-06 53.9 3.2 32 59-90 358-389 (800)
186 2qi9_C Vitamin B12 import ATP- 87.5 0.12 4E-06 48.5 0.3 22 69-90 23-44 (249)
187 2bbw_A Adenylate kinase 4, AK4 87.5 0.18 6.1E-06 46.7 1.5 23 71-93 26-48 (246)
188 3uie_A Adenylyl-sulfate kinase 87.5 0.15 5.2E-06 45.5 1.0 21 70-90 23-43 (200)
189 1ye8_A Protein THEP1, hypothet 87.5 0.17 5.8E-06 44.7 1.3 17 74-90 2-18 (178)
190 3a8t_A Adenylate isopentenyltr 87.3 0.15 5.2E-06 49.9 1.0 19 71-89 39-57 (339)
191 3upu_A ATP-dependent DNA helic 87.2 0.24 8.1E-06 50.6 2.4 30 61-90 29-63 (459)
192 2xzl_A ATP-dependent helicase 87.1 0.28 9.6E-06 53.8 3.0 32 59-90 362-393 (802)
193 2vli_A Antibiotic resistance p 87.1 0.21 7.1E-06 43.5 1.6 24 71-94 4-27 (183)
194 1cke_A CK, MSSA, protein (cyti 87.0 0.19 6.6E-06 45.5 1.4 22 72-93 5-26 (227)
195 1nks_A Adenylate kinase; therm 86.9 0.17 5.9E-06 44.3 1.0 22 74-95 3-24 (194)
196 2plr_A DTMP kinase, probable t 86.9 0.17 5.8E-06 45.1 1.0 23 71-93 3-25 (213)
197 3nh6_A ATP-binding cassette SU 86.9 0.092 3.1E-06 50.9 -0.9 22 69-90 77-98 (306)
198 2w0m_A SSO2452; RECA, SSPF, un 86.9 0.14 4.6E-06 46.4 0.3 22 69-90 20-41 (235)
199 2qt1_A Nicotinamide riboside k 86.8 0.12 4.2E-06 46.3 -0.0 22 69-90 18-39 (207)
200 3t61_A Gluconokinase; PSI-biol 86.8 0.17 5.9E-06 45.1 0.9 21 73-93 19-39 (202)
201 2ze6_A Isopentenyl transferase 86.8 0.18 6.2E-06 47.1 1.1 17 74-90 3-19 (253)
202 1gvn_B Zeta; postsegregational 86.7 0.33 1.1E-05 46.4 2.9 23 72-94 33-55 (287)
203 1y63_A LMAJ004144AAA protein; 86.6 0.21 7.2E-06 44.0 1.4 22 71-92 9-30 (184)
204 2jaq_A Deoxyguanosine kinase; 86.6 0.2 6.9E-06 44.3 1.3 21 74-94 2-22 (205)
205 2wwf_A Thymidilate kinase, put 86.5 0.21 7.2E-06 44.6 1.3 23 71-93 9-31 (212)
206 2z0h_A DTMP kinase, thymidylat 86.5 0.2 6.8E-06 44.2 1.2 21 74-94 2-22 (197)
207 2yvu_A Probable adenylyl-sulfa 86.5 0.19 6.4E-06 44.2 1.0 23 71-93 12-34 (186)
208 1m7g_A Adenylylsulfate kinase; 86.5 0.21 7.3E-06 45.0 1.4 23 69-91 22-44 (211)
209 3kta_A Chromosome segregation 86.4 0.19 6.6E-06 43.8 1.0 17 74-90 28-44 (182)
210 2qmh_A HPR kinase/phosphorylas 86.3 0.21 7.2E-06 45.2 1.2 19 71-89 33-51 (205)
211 1rz3_A Hypothetical protein rb 86.3 0.29 9.8E-06 43.8 2.2 19 71-89 21-39 (201)
212 1ex7_A Guanylate kinase; subst 86.3 0.2 7E-06 44.7 1.1 18 73-90 2-19 (186)
213 2qgz_A Helicase loader, putati 86.3 0.39 1.3E-05 46.3 3.2 19 72-90 152-170 (308)
214 2i3b_A HCR-ntpase, human cance 86.3 0.21 7.1E-06 44.7 1.2 19 72-90 1-19 (189)
215 2bbs_A Cystic fibrosis transme 86.3 0.15 5.2E-06 48.9 0.3 21 70-90 62-82 (290)
216 3fvq_A Fe(3+) IONS import ATP- 86.1 0.16 5.3E-06 50.4 0.3 22 69-90 27-48 (359)
217 4eaq_A DTMP kinase, thymidylat 86.0 0.2 6.9E-06 46.1 0.9 25 71-95 25-49 (229)
218 2bjv_A PSP operon transcriptio 86.0 0.3 1E-05 45.6 2.1 20 70-89 27-46 (265)
219 3b9q_A Chloroplast SRP recepto 85.9 0.15 5.3E-06 49.1 0.1 20 71-90 99-118 (302)
220 2cvh_A DNA repair and recombin 85.9 0.17 5.8E-06 45.4 0.4 22 69-90 17-38 (220)
221 1nn5_A Similar to deoxythymidy 85.8 0.24 8.3E-06 44.3 1.4 23 71-93 8-30 (215)
222 1ofh_A ATP-dependent HSL prote 85.8 0.39 1.3E-05 45.5 2.9 18 72-89 50-67 (310)
223 1aky_A Adenylate kinase; ATP:A 85.7 0.25 8.6E-06 44.7 1.5 22 72-93 4-25 (220)
224 1gtv_A TMK, thymidylate kinase 85.7 0.12 4.1E-06 46.4 -0.8 19 74-92 2-20 (214)
225 3b9p_A CG5977-PA, isoform A; A 85.7 0.36 1.2E-05 45.7 2.6 18 72-89 54-71 (297)
226 1sxj_C Activator 1 40 kDa subu 85.7 0.41 1.4E-05 46.5 3.0 26 65-90 37-64 (340)
227 3fb4_A Adenylate kinase; psych 85.7 0.23 7.8E-06 44.7 1.2 23 74-96 2-24 (216)
228 1rj9_A FTSY, signal recognitio 85.7 0.24 8.3E-06 47.8 1.4 20 71-90 101-120 (304)
229 2qen_A Walker-type ATPase; unk 85.7 0.36 1.2E-05 46.4 2.6 26 65-90 24-49 (350)
230 1z47_A CYSA, putative ABC-tran 85.6 0.17 5.9E-06 50.0 0.3 22 69-90 38-59 (355)
231 3foz_A TRNA delta(2)-isopenten 85.5 0.22 7.4E-06 48.3 0.9 20 73-92 11-30 (316)
232 1qf9_A UMP/CMP kinase, protein 85.3 0.24 8.1E-06 43.4 1.1 21 73-93 7-27 (194)
233 3rlf_A Maltose/maltodextrin im 85.3 0.18 6.3E-06 50.3 0.3 22 69-90 26-47 (381)
234 4tmk_A Protein (thymidylate ki 85.1 0.27 9.2E-06 44.9 1.4 24 71-94 2-25 (213)
235 2yyz_A Sugar ABC transporter, 85.1 0.19 6.5E-06 49.8 0.3 22 69-90 26-47 (359)
236 1zak_A Adenylate kinase; ATP:A 85.1 0.22 7.4E-06 45.2 0.7 22 72-93 5-26 (222)
237 3tqc_A Pantothenate kinase; bi 85.1 0.43 1.5E-05 46.4 2.8 17 74-90 94-110 (321)
238 3dl0_A Adenylate kinase; phosp 85.1 0.25 8.7E-06 44.4 1.2 22 74-95 2-23 (216)
239 1cr0_A DNA primase/helicase; R 85.1 0.19 6.6E-06 47.8 0.4 26 65-90 28-53 (296)
240 2r44_A Uncharacterized protein 85.0 0.3 1E-05 47.2 1.7 29 61-89 35-63 (331)
241 2it1_A 362AA long hypothetical 85.0 0.19 6.6E-06 49.8 0.3 22 69-90 26-47 (362)
242 2pjz_A Hypothetical protein ST 85.0 0.19 6.4E-06 47.5 0.2 21 69-90 28-48 (263)
243 1e6c_A Shikimate kinase; phosp 85.0 0.25 8.4E-06 42.6 1.0 21 73-93 3-23 (173)
244 2pbr_A DTMP kinase, thymidylat 84.9 0.26 8.9E-06 43.2 1.1 21 74-94 2-22 (195)
245 1xjc_A MOBB protein homolog; s 84.9 0.27 9.2E-06 43.2 1.2 19 73-91 5-23 (169)
246 2jeo_A Uridine-cytidine kinase 84.9 0.21 7.3E-06 46.2 0.6 22 69-90 22-43 (245)
247 2cdn_A Adenylate kinase; phosp 84.8 0.3 1E-05 43.5 1.4 24 72-95 20-43 (201)
248 1z63_A Helicase of the SNF2/RA 84.6 0.39 1.3E-05 49.2 2.5 33 57-89 37-73 (500)
249 2onk_A Molybdate/tungstate ABC 84.6 0.2 6.7E-06 46.7 0.1 20 70-90 23-42 (240)
250 1ukz_A Uridylate kinase; trans 84.6 0.28 9.4E-06 43.7 1.1 21 73-93 16-36 (203)
251 1f2t_A RAD50 ABC-ATPase; DNA d 84.5 0.28 9.6E-06 41.9 1.1 18 73-90 24-41 (149)
252 3h4m_A Proteasome-activating n 84.5 0.4 1.4E-05 45.1 2.3 20 70-89 49-68 (285)
253 1g29_1 MALK, maltose transport 84.5 0.21 7.1E-06 49.7 0.3 22 69-90 26-47 (372)
254 1v43_A Sugar-binding transport 84.5 0.21 7.2E-06 49.7 0.3 22 69-90 34-55 (372)
255 3v9p_A DTMP kinase, thymidylat 84.5 0.27 9.2E-06 45.4 1.1 26 69-94 22-47 (227)
256 3crv_A XPD/RAD3 related DNA he 84.5 3.6 0.00012 42.8 9.9 115 184-312 391-528 (551)
257 3gd7_A Fusion complex of cysti 84.4 0.21 7.1E-06 50.1 0.3 22 69-90 44-65 (390)
258 4edh_A DTMP kinase, thymidylat 84.4 0.27 9.1E-06 44.8 1.0 25 70-94 4-28 (213)
259 3tlx_A Adenylate kinase 2; str 84.4 0.28 9.5E-06 45.5 1.1 25 71-95 28-52 (243)
260 1in4_A RUVB, holliday junction 84.3 0.39 1.3E-05 46.7 2.2 18 73-90 52-69 (334)
261 1e4v_A Adenylate kinase; trans 84.2 0.28 9.7E-06 44.2 1.1 20 74-93 2-21 (214)
262 2orw_A Thymidine kinase; TMTK, 84.2 0.32 1.1E-05 43.1 1.4 19 71-89 2-20 (184)
263 1n0w_A DNA repair protein RAD5 84.2 0.21 7.3E-06 45.5 0.2 22 69-90 21-42 (243)
264 3te6_A Regulatory protein SIR3 84.1 0.78 2.7E-05 44.5 4.2 23 71-93 44-66 (318)
265 3hgt_A HDA1 complex subunit 3; 84.0 4 0.00014 39.5 9.1 108 184-316 123-237 (328)
266 2pt5_A Shikimate kinase, SK; a 83.9 0.31 1E-05 41.8 1.1 20 74-93 2-21 (168)
267 2xb4_A Adenylate kinase; ATP-b 83.9 0.3 1E-05 44.5 1.1 21 74-94 2-22 (223)
268 2qby_B CDC6 homolog 3, cell di 83.8 0.55 1.9E-05 45.9 3.1 19 72-90 45-63 (384)
269 1ak2_A Adenylate kinase isoenz 83.8 0.34 1.2E-05 44.3 1.5 24 71-94 15-38 (233)
270 2f1r_A Molybdopterin-guanine d 83.7 0.17 6E-06 44.4 -0.6 18 73-90 3-20 (171)
271 3aez_A Pantothenate kinase; tr 83.7 0.29 9.9E-06 47.4 0.9 22 69-90 87-108 (312)
272 1lv7_A FTSH; alpha/beta domain 83.7 0.52 1.8E-05 43.7 2.7 18 72-89 45-62 (257)
273 4e22_A Cytidylate kinase; P-lo 83.6 0.35 1.2E-05 45.1 1.4 25 70-94 25-49 (252)
274 3tui_C Methionine import ATP-b 83.4 0.25 8.5E-06 49.0 0.3 22 69-90 51-72 (366)
275 3d31_A Sulfate/molybdate ABC t 83.3 0.17 5.9E-06 49.8 -0.9 22 69-90 23-44 (348)
276 3be4_A Adenylate kinase; malar 83.2 0.37 1.3E-05 43.6 1.4 23 72-94 5-27 (217)
277 4hlc_A DTMP kinase, thymidylat 83.2 0.31 1.1E-05 44.1 0.9 23 72-94 2-24 (205)
278 3lv8_A DTMP kinase, thymidylat 83.2 0.37 1.3E-05 44.7 1.4 24 71-94 26-49 (236)
279 3tmk_A Thymidylate kinase; pho 83.1 0.37 1.3E-05 44.0 1.4 24 71-94 4-27 (216)
280 2ipc_A Preprotein translocase 83.1 0.98 3.3E-05 49.7 4.8 24 184-207 441-464 (997)
281 2og2_A Putative signal recogni 83.1 0.24 8.1E-06 49.0 0.0 19 72-90 157-175 (359)
282 2b8t_A Thymidine kinase; deoxy 83.0 0.33 1.1E-05 44.7 1.0 21 70-90 10-30 (223)
283 2dr3_A UPF0273 protein PH0284; 83.0 0.25 8.6E-06 45.1 0.2 22 69-90 20-41 (247)
284 2iyv_A Shikimate kinase, SK; t 83.0 0.34 1.2E-05 42.3 1.0 20 73-92 3-22 (184)
285 2if2_A Dephospho-COA kinase; a 82.9 0.36 1.2E-05 42.9 1.2 20 74-93 3-22 (204)
286 3hws_A ATP-dependent CLP prote 82.9 0.64 2.2E-05 45.6 3.1 19 71-89 50-68 (363)
287 1iqp_A RFCS; clamp loader, ext 82.9 0.67 2.3E-05 44.1 3.2 26 65-90 37-64 (327)
288 1sxj_D Activator 1 41 kDa subu 82.8 0.42 1.4E-05 46.2 1.7 28 63-90 47-76 (353)
289 3crm_A TRNA delta(2)-isopenten 82.7 0.35 1.2E-05 47.1 1.1 18 73-90 6-23 (323)
290 1vht_A Dephospho-COA kinase; s 82.7 0.36 1.2E-05 43.5 1.1 21 72-92 4-24 (218)
291 3d3q_A TRNA delta(2)-isopenten 82.5 0.38 1.3E-05 47.1 1.3 18 73-90 8-25 (340)
292 3nwj_A ATSK2; P loop, shikimat 82.5 0.34 1.1E-05 45.4 0.8 23 71-93 47-69 (250)
293 1nlf_A Regulatory protein REPA 82.4 0.27 9.2E-06 46.4 0.1 22 69-90 27-48 (279)
294 3cf0_A Transitional endoplasmi 82.4 0.71 2.4E-05 44.1 3.2 20 70-89 47-66 (301)
295 3e70_C DPA, signal recognition 82.4 0.34 1.2E-05 47.2 0.9 20 71-90 128-147 (328)
296 1jjv_A Dephospho-COA kinase; P 82.4 0.38 1.3E-05 42.9 1.1 19 74-92 4-22 (206)
297 1fnn_A CDC6P, cell division co 82.3 0.56 1.9E-05 45.9 2.4 17 74-90 46-62 (389)
298 3qf7_A RAD50; ABC-ATPase, ATPa 82.3 0.37 1.3E-05 47.6 1.1 17 74-90 25-41 (365)
299 3nbx_X ATPase RAVA; AAA+ ATPas 82.3 0.69 2.4E-05 47.8 3.2 30 61-90 30-59 (500)
300 4fcw_A Chaperone protein CLPB; 82.2 0.5 1.7E-05 44.9 1.9 17 73-89 48-64 (311)
301 3qf4_B Uncharacterized ABC tra 82.1 0.37 1.3E-05 51.0 1.1 22 69-90 378-399 (598)
302 1hqc_A RUVB; extended AAA-ATPa 82.1 0.66 2.2E-05 44.3 2.8 18 72-89 38-55 (324)
303 3cr8_A Sulfate adenylyltranfer 82.1 0.28 9.6E-06 51.4 0.1 46 45-90 334-387 (552)
304 2px0_A Flagellar biosynthesis 81.9 0.42 1.4E-05 45.9 1.3 20 71-90 104-123 (296)
305 1via_A Shikimate kinase; struc 81.9 0.39 1.3E-05 41.7 1.0 17 74-90 6-22 (175)
306 1np6_A Molybdopterin-guanine d 81.7 0.47 1.6E-05 41.8 1.4 18 73-90 7-24 (174)
307 1oxx_K GLCV, glucose, ABC tran 81.6 0.18 6.2E-06 49.8 -1.4 22 69-90 28-49 (353)
308 3pfi_A Holliday junction ATP-d 81.6 0.58 2E-05 45.2 2.2 17 73-89 56-72 (338)
309 1tq4_A IIGP1, interferon-induc 81.6 0.68 2.3E-05 46.6 2.7 24 67-90 64-87 (413)
310 3a4m_A L-seryl-tRNA(SEC) kinas 81.4 0.43 1.5E-05 44.6 1.1 23 72-94 4-26 (260)
311 3pvs_A Replication-associated 81.4 0.58 2E-05 47.6 2.2 28 66-93 42-71 (447)
312 1ixz_A ATP-dependent metallopr 81.4 0.4 1.4E-05 44.3 0.9 17 74-90 51-67 (254)
313 1nij_A Hypothetical protein YJ 81.4 0.46 1.6E-05 45.9 1.4 21 73-93 5-25 (318)
314 1pui_A ENGB, probable GTP-bind 81.3 0.29 1E-05 43.5 -0.1 21 70-90 24-44 (210)
315 2v1u_A Cell division control p 81.2 0.43 1.5E-05 46.6 1.1 20 71-90 43-62 (387)
316 1jr3_A DNA polymerase III subu 81.1 0.76 2.6E-05 44.7 2.9 17 74-90 40-56 (373)
317 1uf9_A TT1252 protein; P-loop, 80.9 0.44 1.5E-05 42.1 1.0 19 73-91 9-27 (203)
318 2yl4_A ATP-binding cassette SU 80.9 0.42 1.4E-05 50.5 1.0 21 70-90 368-388 (595)
319 2qby_A CDC6 homolog 1, cell di 80.8 0.51 1.7E-05 46.0 1.5 19 72-90 45-63 (386)
320 3uk6_A RUVB-like 2; hexameric 80.8 0.75 2.6E-05 44.8 2.7 20 73-92 71-90 (368)
321 4a82_A Cystic fibrosis transme 80.8 0.35 1.2E-05 50.9 0.3 21 70-90 365-385 (578)
322 2qz4_A Paraplegin; AAA+, SPG7, 80.8 0.51 1.8E-05 43.5 1.4 19 71-89 38-56 (262)
323 3b5x_A Lipid A export ATP-bind 80.6 0.4 1.4E-05 50.5 0.7 22 69-90 366-387 (582)
324 4b4t_J 26S protease regulatory 80.5 2.4 8.3E-05 42.4 6.3 18 72-89 182-199 (405)
325 1p5z_B DCK, deoxycytidine kina 80.5 0.46 1.6E-05 44.4 1.0 25 70-94 22-46 (263)
326 1l8q_A Chromosomal replication 80.4 0.46 1.6E-05 45.7 1.0 19 72-90 37-55 (324)
327 2p5t_B PEZT; postsegregational 80.3 0.41 1.4E-05 44.6 0.5 23 71-93 31-53 (253)
328 3syl_A Protein CBBX; photosynt 80.3 0.52 1.8E-05 44.8 1.3 18 72-89 67-84 (309)
329 3eph_A TRNA isopentenyltransfe 80.3 0.47 1.6E-05 47.6 1.0 18 73-90 3-20 (409)
330 3auy_A DNA double-strand break 80.2 0.44 1.5E-05 47.1 0.8 18 73-90 26-43 (371)
331 1sq5_A Pantothenate kinase; P- 80.0 0.46 1.6E-05 45.7 0.9 21 70-90 78-98 (308)
332 3sop_A Neuronal-specific septi 80.0 0.5 1.7E-05 44.7 1.1 17 74-90 4-20 (270)
333 3k1j_A LON protease, ATP-depen 80.0 0.87 3E-05 48.2 3.0 28 63-90 51-78 (604)
334 1odf_A YGR205W, hypothetical 3 79.9 0.48 1.7E-05 45.3 1.0 19 72-90 31-49 (290)
335 3b60_A Lipid A export ATP-bind 79.7 0.39 1.3E-05 50.6 0.2 21 70-90 367-387 (582)
336 2yhs_A FTSY, cell division pro 79.7 0.37 1.3E-05 49.7 0.0 19 72-90 293-311 (503)
337 4b4t_K 26S protease regulatory 79.6 2.1 7.3E-05 43.2 5.6 21 72-92 206-226 (428)
338 1svm_A Large T antigen; AAA+ f 79.5 0.47 1.6E-05 47.2 0.7 21 70-90 167-187 (377)
339 2ocp_A DGK, deoxyguanosine kin 79.4 0.5 1.7E-05 43.4 0.9 23 72-94 2-24 (241)
340 3qf4_A ABC transporter, ATP-bi 79.4 0.42 1.4E-05 50.5 0.3 21 70-90 367-387 (587)
341 1ojl_A Transcriptional regulat 79.2 0.68 2.3E-05 44.4 1.7 20 70-89 23-42 (304)
342 2npi_A Protein CLP1; CLP1-PCF1 79.2 0.45 1.5E-05 48.7 0.4 22 69-90 135-156 (460)
343 3d8b_A Fidgetin-like protein 1 79.0 0.91 3.1E-05 44.5 2.6 18 72-89 117-134 (357)
344 2yv5_A YJEQ protein; hydrolase 78.9 0.85 2.9E-05 43.7 2.3 22 69-90 162-183 (302)
345 2rcn_A Probable GTPase ENGC; Y 78.9 0.81 2.8E-05 45.1 2.2 23 69-91 212-234 (358)
346 1e69_A Chromosome segregation 78.9 0.75 2.6E-05 44.4 2.0 17 74-90 26-42 (322)
347 1ltq_A Polynucleotide kinase; 78.9 0.58 2E-05 44.4 1.1 22 73-94 3-24 (301)
348 2qag_B Septin-6, protein NEDD5 78.8 0.52 1.8E-05 47.7 0.8 22 69-90 37-60 (427)
349 3qks_A DNA double-strand break 78.8 0.59 2E-05 42.0 1.1 18 73-90 24-41 (203)
350 3hjn_A DTMP kinase, thymidylat 78.7 0.61 2.1E-05 41.8 1.2 19 75-93 3-21 (197)
351 1iy2_A ATP-dependent metallopr 78.6 0.56 1.9E-05 44.1 0.9 17 74-90 75-91 (278)
352 1xx6_A Thymidine kinase; NESG, 78.4 0.59 2E-05 41.8 1.0 19 71-89 7-25 (191)
353 1vma_A Cell division protein F 78.2 0.59 2E-05 45.1 1.0 19 72-90 104-122 (306)
354 1d2n_A N-ethylmaleimide-sensit 78.2 0.63 2.2E-05 43.5 1.2 17 73-89 65-81 (272)
355 2zts_A Putative uncharacterize 78.0 0.48 1.7E-05 43.2 0.3 22 69-90 27-48 (251)
356 4ag6_A VIRB4 ATPase, type IV s 77.8 0.66 2.2E-05 46.1 1.2 22 71-92 34-55 (392)
357 1e9r_A Conjugal transfer prote 77.7 0.55 1.9E-05 47.3 0.6 20 71-90 52-71 (437)
358 3ld9_A DTMP kinase, thymidylat 77.2 0.67 2.3E-05 42.6 1.0 24 71-94 20-43 (223)
359 1sxj_B Activator 1 37 kDa subu 77.0 1.3 4.5E-05 41.9 3.1 17 74-90 44-60 (323)
360 3pxg_A Negative regulator of g 77.0 1.1 3.7E-05 45.8 2.6 25 65-89 192-218 (468)
361 1g8p_A Magnesium-chelatase 38 76.9 1.2 4E-05 43.0 2.7 19 72-90 45-63 (350)
362 2x8a_A Nuclear valosin-contain 76.8 0.68 2.3E-05 43.8 0.9 17 74-90 46-62 (274)
363 1u0l_A Probable GTPase ENGC; p 76.5 1.1 3.6E-05 43.0 2.2 22 69-90 166-187 (301)
364 1yqt_A RNAse L inhibitor; ATP- 76.5 0.59 2E-05 48.8 0.4 22 69-90 44-65 (538)
365 4b4t_H 26S protease regulatory 76.1 3.2 0.00011 42.3 5.7 23 71-93 242-264 (467)
366 4f4c_A Multidrug resistance pr 76.0 0.76 2.6E-05 53.3 1.2 22 69-90 1102-1123(1321)
367 1gm5_A RECG; helicase, replica 75.9 2.1 7.2E-05 46.7 4.6 78 186-265 417-495 (780)
368 1a7j_A Phosphoribulokinase; tr 75.9 1.1 3.6E-05 42.9 2.0 21 72-92 5-25 (290)
369 3lfu_A DNA helicase II; SF1 he 75.9 0.84 2.9E-05 48.3 1.5 31 58-90 10-40 (647)
370 4b4t_M 26S protease regulatory 75.8 2.7 9.3E-05 42.5 5.1 22 72-93 215-236 (434)
371 1lw7_A Transcriptional regulat 75.8 0.57 1.9E-05 46.2 0.1 22 69-90 165-188 (365)
372 3qkt_A DNA double-strand break 75.7 0.75 2.5E-05 44.8 0.9 19 72-90 23-41 (339)
373 1tf7_A KAIC; homohexamer, hexa 75.6 0.59 2E-05 48.5 0.1 22 69-90 36-57 (525)
374 1sxj_A Activator 1 95 kDa subu 75.5 1.5 5.3E-05 45.2 3.3 23 72-94 77-99 (516)
375 2chq_A Replication factor C sm 75.3 0.85 2.9E-05 43.2 1.2 16 74-89 40-55 (319)
376 3ake_A Cytidylate kinase; CMP 75.3 0.86 2.9E-05 40.3 1.1 20 74-93 4-23 (208)
377 1uj2_A Uridine-cytidine kinase 75.2 0.85 2.9E-05 42.2 1.1 20 74-93 24-43 (252)
378 2grj_A Dephospho-COA kinase; T 75.1 0.91 3.1E-05 40.5 1.3 22 72-93 12-33 (192)
379 2ius_A DNA translocase FTSK; n 75.1 0.76 2.6E-05 47.6 0.8 21 70-90 165-185 (512)
380 2dyk_A GTP-binding protein; GT 75.0 0.83 2.8E-05 38.2 0.9 17 74-90 3-19 (161)
381 2ce2_X GTPase HRAS; signaling 74.8 0.82 2.8E-05 38.1 0.9 17 74-90 5-21 (166)
382 3ux8_A Excinuclease ABC, A sub 74.7 0.66 2.2E-05 49.7 0.2 21 70-90 346-366 (670)
383 4akg_A Glutathione S-transfera 74.6 2.7 9.3E-05 51.9 5.5 44 47-90 895-941 (2695)
384 2f6r_A COA synthase, bifunctio 74.4 0.87 3E-05 43.1 1.0 20 73-92 76-95 (281)
385 1z2a_A RAS-related protein RAB 74.4 0.88 3E-05 38.2 0.9 17 74-90 7-23 (168)
386 2fna_A Conserved hypothetical 74.3 1.2 3.9E-05 42.8 1.9 18 73-90 31-48 (357)
387 2f9l_A RAB11B, member RAS onco 74.2 0.89 3E-05 40.0 0.9 17 74-90 7-23 (199)
388 1pzn_A RAD51, DNA repair and r 74.1 0.58 2E-05 46.0 -0.4 20 71-90 130-149 (349)
389 1oix_A RAS-related protein RAB 74.1 0.87 3E-05 40.0 0.8 17 74-90 31-47 (191)
390 3lda_A DNA repair protein RAD5 74.0 0.68 2.3E-05 46.4 0.1 21 70-90 176-196 (400)
391 3vfd_A Spastin; ATPase, microt 73.9 1.3 4.6E-05 43.8 2.3 18 72-89 148-165 (389)
392 3eie_A Vacuolar protein sortin 73.9 1 3.6E-05 43.3 1.4 18 72-89 51-68 (322)
393 3bh0_A DNAB-like replicative h 73.8 0.68 2.3E-05 44.7 0.1 29 62-90 58-86 (315)
394 3bk7_A ABC transporter ATP-bin 73.7 0.76 2.6E-05 48.7 0.4 22 69-90 114-135 (607)
395 3t15_A Ribulose bisphosphate c 73.7 0.96 3.3E-05 43.1 1.1 23 73-95 37-59 (293)
396 2qm8_A GTPase/ATPase; G protei 73.7 0.89 3E-05 44.4 0.9 27 64-90 43-73 (337)
397 1xwi_A SKD1 protein; VPS4B, AA 73.7 1 3.6E-05 43.5 1.4 18 72-89 45-62 (322)
398 4aby_A DNA repair protein RECN 73.7 0.34 1.2E-05 48.4 -2.2 19 71-90 60-78 (415)
399 2r62_A Cell division protease 73.6 0.79 2.7E-05 42.6 0.4 18 72-89 44-61 (268)
400 1q3t_A Cytidylate kinase; nucl 73.4 1.1 3.9E-05 40.9 1.5 24 71-94 15-38 (236)
401 3r20_A Cytidylate kinase; stru 73.3 1 3.5E-05 41.6 1.1 23 71-93 8-30 (233)
402 3ozx_A RNAse L inhibitor; ATP 73.3 0.76 2.6E-05 48.0 0.3 21 70-90 292-312 (538)
403 3j16_B RLI1P; ribosome recycli 73.2 0.79 2.7E-05 48.6 0.4 22 69-90 100-121 (608)
404 2ged_A SR-beta, signal recogni 73.0 0.99 3.4E-05 39.2 0.9 18 73-90 49-66 (193)
405 2qp9_X Vacuolar protein sortin 72.9 1.3 4.4E-05 43.4 1.8 17 73-89 85-101 (355)
406 1um8_A ATP-dependent CLP prote 72.7 1.1 3.7E-05 44.2 1.2 18 72-89 72-89 (376)
407 2c9o_A RUVB-like 1; hexameric 72.5 1.8 6E-05 44.0 2.8 21 73-93 64-84 (456)
408 3oiy_A Reverse gyrase helicase 72.4 2.4 8.2E-05 41.9 3.7 79 184-265 62-144 (414)
409 2z4s_A Chromosomal replication 72.3 1.7 5.9E-05 43.9 2.7 19 72-90 130-148 (440)
410 1u8z_A RAS-related protein RAL 72.3 1.1 3.6E-05 37.6 0.9 17 74-90 6-22 (168)
411 1z0j_A RAB-22, RAS-related pro 72.3 1.1 3.6E-05 37.8 0.9 17 74-90 8-24 (170)
412 1ky3_A GTP-binding protein YPT 72.2 1.1 3.6E-05 38.3 0.9 17 74-90 10-26 (182)
413 2wji_A Ferrous iron transport 72.1 1.1 3.7E-05 38.2 0.9 17 74-90 5-21 (165)
414 1ek0_A Protein (GTP-binding pr 72.0 1.1 3.7E-05 37.6 0.9 17 74-90 5-21 (170)
415 1kao_A RAP2A; GTP-binding prot 71.9 1.1 3.7E-05 37.5 0.9 17 74-90 5-21 (167)
416 3zvl_A Bifunctional polynucleo 71.7 1.3 4.3E-05 44.6 1.5 22 72-93 258-279 (416)
417 1tue_A Replication protein E1; 71.7 0.93 3.2E-05 41.2 0.4 17 73-89 59-75 (212)
418 2wsm_A Hydrogenase expression/ 71.7 1.1 3.9E-05 40.0 1.0 20 71-90 29-48 (221)
419 2zej_A Dardarin, leucine-rich 71.6 1.1 3.8E-05 38.8 0.9 17 74-90 4-20 (184)
420 3ux8_A Excinuclease ABC, A sub 71.6 0.86 3E-05 48.8 0.2 20 70-89 42-61 (670)
421 2erx_A GTP-binding protein DI- 71.5 1.1 3.9E-05 37.7 0.9 17 74-90 5-21 (172)
422 3pqc_A Probable GTP-binding pr 71.5 1.1 3.7E-05 38.8 0.8 17 74-90 25-41 (195)
423 1svi_A GTP-binding protein YSX 71.5 1.1 3.7E-05 39.0 0.8 18 73-90 24-41 (195)
424 1c1y_A RAS-related protein RAP 71.4 1.1 3.9E-05 37.5 0.9 17 74-90 5-21 (167)
425 1m8p_A Sulfate adenylyltransfe 71.4 2 6.7E-05 45.2 2.9 47 46-92 362-416 (573)
426 1w5s_A Origin recognition comp 71.3 1.4 4.7E-05 43.5 1.6 22 72-93 50-73 (412)
427 1g16_A RAS-related protein SEC 71.3 1.1 3.8E-05 37.7 0.9 17 74-90 5-21 (170)
428 1lkx_A Myosin IE heavy chain; 71.2 2 6.8E-05 46.2 2.9 36 53-88 70-110 (697)
429 3u61_B DNA polymerase accessor 71.2 2.1 7.2E-05 40.9 2.9 18 73-90 49-66 (324)
430 1w1w_A Structural maintenance 71.2 1.3 4.4E-05 44.6 1.4 20 71-90 25-44 (430)
431 3m6a_A ATP-dependent protease 70.9 1.3 4.5E-05 46.2 1.4 20 71-90 107-126 (543)
432 1sxj_E Activator 1 40 kDa subu 70.8 1.2 4E-05 43.2 0.9 16 75-90 39-54 (354)
433 3bk7_A ABC transporter ATP-bin 70.7 0.94 3.2E-05 48.0 0.3 21 70-90 380-400 (607)
434 2zan_A Vacuolar protein sortin 70.6 2.1 7.1E-05 43.4 2.8 17 72-88 167-183 (444)
435 2h92_A Cytidylate kinase; ross 70.6 1.3 4.4E-05 39.7 1.1 19 72-90 3-21 (219)
436 1wms_A RAB-9, RAB9, RAS-relate 70.6 1.2 4.2E-05 37.8 0.9 17 74-90 9-25 (177)
437 2r6a_A DNAB helicase, replicat 70.5 0.89 3E-05 46.2 0.0 28 63-90 194-221 (454)
438 1yqt_A RNAse L inhibitor; ATP- 70.4 0.96 3.3E-05 47.2 0.3 21 70-90 310-330 (538)
439 3kl4_A SRP54, signal recogniti 70.3 1.1 3.8E-05 45.3 0.7 19 72-90 97-115 (433)
440 1z08_A RAS-related protein RAB 70.3 1.2 4.2E-05 37.5 0.9 17 74-90 8-24 (170)
441 3euj_A Chromosome partition pr 70.1 1 3.4E-05 46.3 0.3 18 73-90 30-47 (483)
442 3q85_A GTP-binding protein REM 70.0 1.3 4.4E-05 37.4 0.9 16 75-90 5-20 (169)
443 4f4c_A Multidrug resistance pr 69.9 0.98 3.4E-05 52.4 0.2 23 70-92 442-464 (1321)
444 3q72_A GTP-binding protein RAD 69.8 1.3 4.3E-05 37.3 0.9 17 74-90 4-20 (166)
445 3pxi_A Negative regulator of g 69.8 2 6.8E-05 46.6 2.6 27 64-90 191-219 (758)
446 1t9h_A YLOQ, probable GTPase E 69.7 0.59 2E-05 45.1 -1.4 24 69-92 170-193 (307)
447 1r2q_A RAS-related protein RAB 69.6 1.3 4.5E-05 37.1 0.9 17 74-90 8-24 (170)
448 3tw8_B RAS-related protein RAB 69.6 1.3 4.4E-05 37.7 0.9 17 74-90 11-27 (181)
449 3gmt_A Adenylate kinase; ssgci 69.6 1.8 6.3E-05 39.8 2.0 24 74-97 10-33 (230)
450 2fn4_A P23, RAS-related protei 69.5 1.3 4.4E-05 37.7 0.8 17 74-90 11-27 (181)
451 4anj_A Unconventional myosin-V 69.5 2.2 7.6E-05 47.9 2.9 47 42-88 107-160 (1052)
452 3iuy_A Probable ATP-dependent 69.4 6.5 0.00022 35.2 5.7 74 185-265 93-172 (228)
453 2obl_A ESCN; ATPase, hydrolase 69.4 1 3.5E-05 44.2 0.2 22 69-90 68-89 (347)
454 2dpy_A FLII, flagellum-specifi 69.4 1.1 3.7E-05 45.5 0.4 22 69-90 154-175 (438)
455 2wjg_A FEOB, ferrous iron tran 69.1 1.4 4.7E-05 38.1 0.9 17 74-90 9-25 (188)
456 2gj8_A MNME, tRNA modification 69.1 1.3 4.5E-05 38.0 0.8 19 72-90 4-22 (172)
457 2y8e_A RAB-protein 6, GH09086P 69.1 1.3 4.6E-05 37.5 0.9 17 74-90 16-32 (179)
458 1zu4_A FTSY; GTPase, signal re 68.9 1.4 4.7E-05 42.7 1.0 19 72-90 105-123 (320)
459 2nzj_A GTP-binding protein REM 68.7 1.4 4.8E-05 37.3 0.9 16 74-89 6-21 (175)
460 3ozx_A RNAse L inhibitor; ATP 68.5 1.4 4.7E-05 46.0 0.9 22 69-90 22-43 (538)
461 2lkc_A Translation initiation 68.5 1.7 5.8E-05 36.9 1.4 19 72-90 8-26 (178)
462 1z0f_A RAB14, member RAS oncog 68.4 1.4 5E-05 37.3 0.9 17 74-90 17-33 (179)
463 2fu5_C RAS-related protein RAB 68.4 1.8 6E-05 37.1 1.5 17 74-90 10-26 (183)
464 3con_A GTPase NRAS; structural 68.4 1.4 4.9E-05 38.0 0.9 17 74-90 23-39 (190)
465 2r2a_A Uncharacterized protein 68.4 1.6 5.4E-05 39.2 1.2 16 74-89 7-22 (199)
466 2gxq_A Heat resistant RNA depe 68.4 6.6 0.00023 34.3 5.4 73 185-265 71-149 (207)
467 1nrj_B SR-beta, signal recogni 68.4 1.4 4.9E-05 39.1 0.9 18 73-90 13-30 (218)
468 2v26_A Myosin VI; calmodulin-b 68.2 2.5 8.5E-05 46.1 2.9 47 42-88 103-156 (784)
469 2z43_A DNA repair and recombin 68.2 1.1 3.8E-05 43.3 0.1 22 69-90 104-125 (324)
470 3lxx_A GTPase IMAP family memb 68.2 1.4 4.9E-05 40.1 0.9 17 74-90 31-47 (239)
471 2www_A Methylmalonic aciduria 68.2 1.4 4.9E-05 43.1 1.0 19 72-90 74-92 (349)
472 1upt_A ARL1, ADP-ribosylation 68.1 1.5 5.1E-05 37.0 0.9 17 74-90 9-25 (171)
473 3g5u_A MCG1178, multidrug resi 68.1 1.2 4E-05 51.6 0.3 21 70-90 414-434 (1284)
474 1a5t_A Delta prime, HOLB; zinc 68.0 2.8 9.5E-05 40.5 3.0 25 65-89 14-41 (334)
475 2cxx_A Probable GTP-binding pr 67.8 1.4 4.9E-05 37.9 0.8 16 75-90 4-19 (190)
476 2bov_A RAla, RAS-related prote 67.6 1.5 5.2E-05 38.3 0.9 17 74-90 16-32 (206)
477 4dsu_A GTPase KRAS, isoform 2B 67.6 1.5 5.2E-05 37.6 0.9 17 74-90 6-22 (189)
478 3bc1_A RAS-related protein RAB 67.6 1.5 5.2E-05 37.7 0.9 17 74-90 13-29 (195)
479 2hf9_A Probable hydrogenase ni 67.6 1.6 5.4E-05 39.1 1.1 18 73-90 39-56 (226)
480 2a9k_A RAS-related protein RAL 67.5 1.5 5.3E-05 37.4 0.9 17 74-90 20-36 (187)
481 1moz_A ARL1, ADP-ribosylation 67.5 1.3 4.6E-05 37.9 0.5 18 73-90 19-36 (183)
482 2iw3_A Elongation factor 3A; a 67.4 1.2 4.2E-05 49.7 0.3 24 70-93 459-482 (986)
483 1t6n_A Probable ATP-dependent 67.2 10 0.00035 33.5 6.5 76 186-265 82-163 (220)
484 2zr9_A Protein RECA, recombina 67.2 1.7 5.9E-05 42.6 1.3 22 69-90 58-79 (349)
485 2oil_A CATX-8, RAS-related pro 67.1 1.6 5.4E-05 37.9 0.9 17 74-90 27-43 (193)
486 3kkq_A RAS-related protein M-R 67.1 1.6 5.5E-05 37.4 0.9 17 74-90 20-36 (183)
487 3hr8_A Protein RECA; alpha and 67.1 1.5 5.2E-05 43.2 0.9 20 71-90 60-79 (356)
488 1w7j_A Myosin VA; motor protei 66.9 2.8 9.4E-05 45.8 2.9 47 42-88 119-172 (795)
489 1w9i_A Myosin II heavy chain; 66.9 2.8 9.5E-05 45.5 2.9 48 43-90 136-190 (770)
490 2efe_B Small GTP-binding prote 66.8 1.6 5.5E-05 37.2 0.9 17 74-90 14-30 (181)
491 2bme_A RAB4A, RAS-related prot 66.7 1.6 5.4E-05 37.5 0.9 17 74-90 12-28 (186)
492 4db1_A Myosin-7; S1DC, cardiac 66.7 2.8 9.6E-05 45.6 2.9 46 43-88 135-187 (783)
493 3mwy_W Chromo domain-containin 66.6 2.5 8.6E-05 46.2 2.6 33 57-89 236-272 (800)
494 1v5w_A DMC1, meiotic recombina 66.6 1.1 3.9E-05 43.7 -0.2 21 70-90 120-140 (343)
495 1g41_A Heat shock protein HSLU 66.5 2.4 8.1E-05 43.1 2.2 18 73-90 51-68 (444)
496 1r8s_A ADP-ribosylation factor 66.4 1.7 5.8E-05 36.4 0.9 16 75-90 3-18 (164)
497 1g8f_A Sulfate adenylyltransfe 66.2 2.1 7.1E-05 44.3 1.7 45 45-89 360-412 (511)
498 1mh1_A RAC1; GTP-binding, GTPa 66.2 1.7 5.8E-05 37.2 0.9 17 74-90 7-23 (186)
499 3vkg_A Dynein heavy chain, cyt 66.2 4.8 0.00017 50.4 5.1 45 46-90 877-924 (3245)
500 2g6b_A RAS-related protein RAB 66.1 1.7 5.9E-05 37.0 0.9 17 74-90 12-28 (180)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1e-65 Score=565.73 Aligned_cols=402 Identities=26% Similarity=0.353 Sum_probs=338.2
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh--------------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL-------------------- 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~-------------------- 94 (455)
.|.+...++++.++++.|+.+|++.+|++++.++.++++++|+|+|||||||++| +++.
T Consensus 73 ~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~L 152 (773)
T 2xau_A 73 PFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVA 152 (773)
T ss_dssp TTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHH
T ss_pred CccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHH
Confidence 4777888999999999999999999999999999999999999999999999999 5433
Q ss_pred ----------hhcCCCC----------------------ChHHHHHhc-cCCCCcCcc-------------hHHHHHHHH
Q psy6094 95 ----------KRSETQQ----------------------YPNDVLNML-KDPELEGVN-------------NDVIFSLLQ 128 (455)
Q Consensus 95 ----------e~~~~vg----------------------~p~~ll~~l-~d~~L~~~~-------------~D~ll~~lk 128 (455)
+.+..+| +|+.+++.+ .++.+.+++ +|.++.+++
T Consensus 153 a~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~ 232 (773)
T 2xau_A 153 AMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLK 232 (773)
T ss_dssp HHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHH
Confidence 1111111 244466666 566666655 677788899
Q ss_pred HHHHhcCCCCeEEEEccCC-----------------CCC-ccceEEeehhhhhhhhccCCCCChHHHHHHHHccCCCCEE
Q psy6094 129 HICTTQRPGAILVYCTYTF-----------------MGV-SPMKVFFCKNVLQRLMKGVGANSPKRWVKLLRSMLVVPIL 190 (455)
Q Consensus 129 ~il~~~~~~~k~ilmSAT~-----------------~g~-~pv~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~~g~iL 190 (455)
.+. ..+++.|+|+||||+ +|+ +|++.+|.+.....+... ....+........+|++|
T Consensus 233 ~l~-~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~----~l~~l~~~~~~~~~g~iL 307 (773)
T 2xau_A 233 QVV-KRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDS----AIRTVLQIHATEEAGDIL 307 (773)
T ss_dssp HHH-HHCTTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHH----HHHHHHHHHHHSCSCEEE
T ss_pred HHH-HhCCCceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHH----HHHHHHHHHHhcCCCCEE
Confidence 988 677899999999999 677 888888876432111100 000122222225789999
Q ss_pred EEcCCHHHHHHHHHHHHhcCC-----CCCCCeEEEeecCCCChhhHhhhhcCCC-----CCceEEEEeCCCCccCCCCCC
Q psy6094 191 VFLPGWDTINSLHRSMCQSSF-----FNSSRFQIIPLHSMLPTVSQKSIFNTPP-----EGVRKIVLATNIAETSITIDD 260 (455)
Q Consensus 191 VFlp~~~ei~~l~~~L~~~~~-----~~~~~~~v~~lhs~l~~~~r~~v~~~~~-----~g~~kVivaTniae~gitI~~ 260 (455)
|||+|+++|+.+++.|..... ....++.+.++||+|++++|.++++.|+ +|.++||||||+||+|||||+
T Consensus 308 VF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~ 387 (773)
T 2xau_A 308 LFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDG 387 (773)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTT
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCC
Confidence 999999999999999985100 0123589999999999999999999999 999999999999999999999
Q ss_pred eeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCChh----hhccCCCCcccccC-hHHHH
Q psy6094 261 IVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPND----VLNMLKDPELEGVN-NDVIF 335 (455)
Q Consensus 261 V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~----~~~~~~~PEi~r~~-~~~~L 335 (455)
|++|||+|++|.+.||+..|++.|.+.|+|+++|.||+|||||.++|.||+||+++ .+.++..|||++.+ .+++|
T Consensus 388 v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L 467 (773)
T 2xau_A 388 IVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVL 467 (773)
T ss_dssp EEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHH
T ss_pred eEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCccccCcHHHHHH
Confidence 99999999999999999999999999999999999999999999899999999954 36678999999999 99999
Q ss_pred HHHh---------hhcCCCChhhHHhHHhhhhhcccccCCCCCCcccCChHHHHHhhCCCCh---------------hHH
Q psy6094 336 SLLQ---------HICTTQRPGAILVFLPGWDTINSLHRSMCQSSFFNSCLLYEFAMVDNKP---------------KEI 391 (455)
Q Consensus 336 ~~l~---------~~~~~P~~~~i~~al~~L~~lgald~~~~l~~~~~T~lG~~l~~lp~~p---------------~~~ 391 (455)
.+.. .|++||+++++..|++.|..+||||.++++ |++|+.|+.||++| +++
T Consensus 468 ~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~l-----T~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~ 542 (773)
T 2xau_A 468 ELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNL-----TPLGRLASQFPLDPMLAVMLIGSFEFQCSQEI 542 (773)
T ss_dssp HHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCB-----CHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHH
T ss_pred HHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcccCCCc-----ChhhhhhccccCCHHHHHHHHhhcccCchhHH
Confidence 7654 688999999999999999999999999999 99999999999999 899
Q ss_pred HHHHHhhc----CcCCcChHHHHHHHHhhhC-CCCcHHHHHHHHHHHhcCCCC-c-hHhHHHh
Q psy6094 392 ITVRDCLS----FECKPSTAKIIKELRARLD-MLLAHKLSHPGTTAWGDPNEG-N-ILHCCSG 447 (455)
Q Consensus 392 l~iaa~ls----f~~p~~~~~~~~~~~~~~~-~~sD~~~~~~~~~~~~~~~~~-~-~~~~c~~ 447 (455)
++|||+|+ |..|.+.+++++.+|++|. ..|||++++|+|++|.+.... . ..+||++
T Consensus 543 l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~ 605 (773)
T 2xau_A 543 LTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRD 605 (773)
T ss_dssp HHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCCTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHH
T ss_pred HHHHHhcccCCcccCChHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999999 8888899999999999999 899999999999999775421 1 2589997
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.1e-40 Score=365.63 Aligned_cols=367 Identities=13% Similarity=0.022 Sum_probs=245.4
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHH-HHcCCeEEEEcCCCCCcccchh-hhhh--------------------
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDM-VRNNQITVISGETGSGPPLHLD-FITL-------------------- 94 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~-i~~~~~vii~~~TGSGKTtqlp-~ll~-------------------- 94 (455)
|.+..+++.+.+.++.++.-..+++|.++++. +.++++++|+|+||||||++++ +++.
T Consensus 10 ~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~ 89 (715)
T 2va8_A 10 IEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTN 89 (715)
T ss_dssp GGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHH
T ss_pred HHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHH
Confidence 44556778888888887887899999999999 8899999999999999999987 5543
Q ss_pred ----------hhcCCCC---------------------ChHHHHHhc-cCCC-CcCcc------hHH-----HHHHHHHH
Q psy6094 95 ----------KRSETQQ---------------------YPNDVLNML-KDPE-LEGVN------NDV-----IFSLLQHI 130 (455)
Q Consensus 95 ----------e~~~~vg---------------------~p~~ll~~l-~d~~-L~~~~------~D~-----ll~~lk~i 130 (455)
+.|..+| +|..+.+.+ .++. +.+++ .+. ....++.+
T Consensus 90 q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i 169 (715)
T 2va8_A 90 EKYLTFKDWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESV 169 (715)
T ss_dssp HHHHHHGGGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHH
T ss_pred HHHHHHHHhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHH
Confidence 1122221 244455555 4443 55555 221 22345555
Q ss_pred HHhcCCCCeEEEEccCCC-----------------CC-ccceEEeehhhh------hhhhccCCC--CChHHHHHHHHc-
Q psy6094 131 CTTQRPGAILVYCTYTFM-----------------GV-SPMKVFFCKNVL------QRLMKGVGA--NSPKRWVKLLRS- 183 (455)
Q Consensus 131 l~~~~~~~k~ilmSAT~~-----------------g~-~pv~~~~l~~~~------~~~~~~~~~--~~~~~l~~~i~~- 183 (455)
+.+. +++|+|+||||++ ++ +|+..++..... -.+...... .........+.+
T Consensus 170 ~~~~-~~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (715)
T 2va8_A 170 TIRA-KRRNLLALSATISNYKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDS 248 (715)
T ss_dssp HHHH-HTSEEEEEESCCTTHHHHHHHHTCEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHH
T ss_pred HHhc-ccCcEEEEcCCCCCHHHHHHHhCCCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHH
Confidence 5232 3899999999983 45 666554432110 000000000 000111222211
Q ss_pred -cCCCCEEEEcCCHHHHHHHHHHHHhcCCC---CC---------------------------CCeEEEeecCCCChhhHh
Q psy6094 184 -MLVVPILVFLPGWDTINSLHRSMCQSSFF---NS---------------------------SRFQIIPLHSMLPTVSQK 232 (455)
Q Consensus 184 -~~~g~iLVFlp~~~ei~~l~~~L~~~~~~---~~---------------------------~~~~v~~lhs~l~~~~r~ 232 (455)
..++++||||||+++++.+++.|...... .. -...+.++||+|++++|.
T Consensus 249 ~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~ 328 (715)
T 2va8_A 249 LSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRD 328 (715)
T ss_dssp HTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred HhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHH
Confidence 56799999999999999999999875311 00 012488999999999999
Q ss_pred hhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCC---CCeE
Q psy6094 233 SIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTL---KRSE 309 (455)
Q Consensus 233 ~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~---~G~c 309 (455)
.+++.|++|.++||||||++|+|||||++++|||+ ...||++.+.. ..|+|.+++.||+|||||.+ +|.|
T Consensus 329 ~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~ 401 (715)
T 2va8_A 329 LIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGES 401 (715)
T ss_dssp HHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEE
T ss_pred HHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceE
Confidence 99999999999999999999999999999999997 45688766543 67999999999999999988 7999
Q ss_pred EecCChhh-----hcc--CCCCcccccC-hH------HHHHHHh-----------hhcC------CCChhhHHhHHhhhh
Q psy6094 310 TQQYPNDV-----LNM--LKDPELEGVN-ND------VIFSLLQ-----------HICT------TQRPGAILVFLPGWD 358 (455)
Q Consensus 310 ~~L~t~~~-----~~~--~~~PEi~r~~-~~------~~L~~l~-----------~~~~------~P~~~~i~~al~~L~ 358 (455)
|+++++.. ++. ...||+.+++ .. .+|..+. ++++ +|+...+..|++.|.
T Consensus 402 ~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~ 481 (715)
T 2va8_A 402 IVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLL 481 (715)
T ss_dssp EEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHHHHHH
Confidence 99998432 222 4679999988 43 2332211 2222 455567999999999
Q ss_pred hcccccCCCCCCcccCChHHHHHhhCCCCh------------------hHHHHHHHhhc-CcCCcChHHHHHHH
Q psy6094 359 TINSLHRSMCQSSFFNSCLLYEFAMVDNKP------------------KEIITVRDCLS-FECKPSTAKIIKEL 413 (455)
Q Consensus 359 ~lgald~~~~l~~~~~T~lG~~l~~lp~~p------------------~~~l~iaa~ls-f~~p~~~~~~~~~~ 413 (455)
.+|+|+.++. .+.+|++|+.|+.+|++| .+++.|+|+.+ |...+....+.+..
T Consensus 482 ~~g~i~~~~~--~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l 553 (715)
T 2va8_A 482 EHSFIKEEGN--TFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEEL 553 (715)
T ss_dssp HTTSEEECSS--EEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHH
T ss_pred HCcCEeecCC--eEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCcccccCccChHHHHHH
Confidence 9999987641 133499999999999999 25666666666 76665555444433
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=4.1e-38 Score=344.55 Aligned_cols=325 Identities=12% Similarity=0.070 Sum_probs=231.0
Q ss_pred cCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh--------------------------
Q psy6094 42 QSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL-------------------------- 94 (455)
Q Consensus 42 ~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~-------------------------- 94 (455)
+++.+.+.++.++.-..+++|.++++.+.++++++++||||||||++++ +++.
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~ 89 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFK 89 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHT
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHH
Confidence 5666777777777778899999999999999999999999999998877 5543
Q ss_pred ---hhcCCCC---------------------ChHHHHHhc-cCCC-CcCcc------------------hHHHHHHHHHH
Q psy6094 95 ---KRSETQQ---------------------YPNDVLNML-KDPE-LEGVN------------------NDVIFSLLQHI 130 (455)
Q Consensus 95 ---e~~~~vg---------------------~p~~ll~~l-~d~~-L~~~~------------------~D~ll~~lk~i 130 (455)
+.|..+| +|..+.+.+ .++. +..++ .|.++..++
T Consensus 90 ~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~-- 167 (702)
T 2p6r_A 90 KWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMR-- 167 (702)
T ss_dssp TTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHH--
T ss_pred HHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHH--
Confidence 1111211 244566655 4433 55555 233333333
Q ss_pred HHhcCCCCeEEEEccCCC-----------------CC-ccceEEeehhhhhhhhccC-----CCCChHHHHHHHHccCCC
Q psy6094 131 CTTQRPGAILVYCTYTFM-----------------GV-SPMKVFFCKNVLQRLMKGV-----GANSPKRWVKLLRSMLVV 187 (455)
Q Consensus 131 l~~~~~~~k~ilmSAT~~-----------------g~-~pv~~~~l~~~~~~~~~~~-----~~~~~~~l~~~i~~~~~g 187 (455)
..++++|+|+||||++ ++ +|+..++.......+.... .......+...+ ..++
T Consensus 168 --~~~~~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 243 (702)
T 2p6r_A 168 --RMNKALRVIGLSATAPNVTEIAEWLDADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECV--AENG 243 (702)
T ss_dssp --HHCTTCEEEEEECCCTTHHHHHHHTTCEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHH--HTTC
T ss_pred --hcCcCceEEEECCCcCCHHHHHHHhCCCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHH--hcCC
Confidence 4568999999999983 45 6666544322110111100 000111122222 4689
Q ss_pred CEEEEcCCHHHHHHHHHHHHhcCC--CCCC----------------------CeEEEeecCCCChhhHhhhhcCCCCCce
Q psy6094 188 PILVFLPGWDTINSLHRSMCQSSF--FNSS----------------------RFQIIPLHSMLPTVSQKSIFNTPPEGVR 243 (455)
Q Consensus 188 ~iLVFlp~~~ei~~l~~~L~~~~~--~~~~----------------------~~~v~~lhs~l~~~~r~~v~~~~~~g~~ 243 (455)
++||||+++++++.+++.|..... .... ...+.++||+|++++|..+++.|++|.+
T Consensus 244 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~ 323 (702)
T 2p6r_A 244 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNI 323 (702)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCC
Confidence 999999999999999999875310 0000 1247789999999999999999999999
Q ss_pred EEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCC---CCeEEecCChhhhc-
Q psy6094 244 KIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTL---KRSETQQYPNDVLN- 319 (455)
Q Consensus 244 kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~---~G~c~~L~t~~~~~- 319 (455)
+||||||++|+|||+|++++||++ ...|| |. ..|+|.+++.||+|||||.+ +|.||.++++..+.
T Consensus 324 ~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 324 KVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp CEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred eEEEECcHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHH
Confidence 999999999999999999999996 45676 22 57999999999999999988 79999999955432
Q ss_pred ---c--CCCCcccccC-hH------HHHHHHh-----------hhc---------CCCChhhHHhHHhhhhhcccccCC-
Q psy6094 320 ---M--LKDPELEGVN-ND------VIFSLLQ-----------HIC---------TTQRPGAILVFLPGWDTINSLHRS- 366 (455)
Q Consensus 320 ---~--~~~PEi~r~~-~~------~~L~~l~-----------~~~---------~~P~~~~i~~al~~L~~lgald~~- 366 (455)
. ...||+.+++ .. .+|..+. +++ ++|..+.+..|++.|..+|+|+.+
T Consensus 393 ~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~ 472 (702)
T 2p6r_A 393 AVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAA 472 (702)
T ss_dssp HHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESS
T ss_pred HHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECC
Confidence 1 4579999988 43 2221111 111 267889999999999999999977
Q ss_pred -CCCCcccCChHHHHHhhCCCCh
Q psy6094 367 -MCQSSFFNSCLLYEFAMVDNKP 388 (455)
Q Consensus 367 -~~l~~~~~T~lG~~l~~lp~~p 388 (455)
..+ |++|+.++.+|++|
T Consensus 473 ~~~~-----t~lG~~~~~~~~~~ 490 (702)
T 2p6r_A 473 HLAP-----TKLGSLVSRLYIDP 490 (702)
T ss_dssp SEEE-----CHHHHHHHHTTCCH
T ss_pred eecc-----ChHHHHHHHHhCCH
Confidence 455 99999999999999
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=6.2e-36 Score=328.17 Aligned_cols=352 Identities=14% Similarity=0.032 Sum_probs=236.3
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHH-HHcCCeEEEEcCCCCCcccchh-hhhh--------------------
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDM-VRNNQITVISGETGSGPPLHLD-FITL-------------------- 94 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~-i~~~~~vii~~~TGSGKTtqlp-~ll~-------------------- 94 (455)
|.+..+++.+.+.++.++....+++|.++++. +.++++++++|+||||||++++ +++.
T Consensus 3 f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~ 82 (720)
T 2zj8_A 3 VDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAE 82 (720)
T ss_dssp GGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHH
T ss_pred HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHH
Confidence 44566788899999998888999999999998 8999999999999999998876 4442
Q ss_pred ----------hhcCCCC---------------------ChHHHHHhc-cCCC-CcCcc------hHHHH-----HHHHHH
Q psy6094 95 ----------KRSETQQ---------------------YPNDVLNML-KDPE-LEGVN------NDVIF-----SLLQHI 130 (455)
Q Consensus 95 ----------e~~~~vg---------------------~p~~ll~~l-~d~~-L~~~~------~D~ll-----~~lk~i 130 (455)
+.|..+| +|..+.+.+ .++. +..++ .+.+. ..+..+
T Consensus 83 q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~l 162 (720)
T 2zj8_A 83 EKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVI 162 (720)
T ss_dssp HHHHHTGGGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHH
Confidence 1122221 244455555 3332 55554 22111 112222
Q ss_pred HHhcCCCCeEEEEccCCC-----------------CC-ccceEEeehhhhhhhhccC---CCCChHHHHHHHHccCCCCE
Q psy6094 131 CTTQRPGAILVYCTYTFM-----------------GV-SPMKVFFCKNVLQRLMKGV---GANSPKRWVKLLRSMLVVPI 189 (455)
Q Consensus 131 l~~~~~~~k~ilmSAT~~-----------------g~-~pv~~~~l~~~~~~~~~~~---~~~~~~~l~~~i~~~~~g~i 189 (455)
+...++++|+|+||||++ ++ .|+...+.....-.+.... .......+...+ ..++++
T Consensus 163 l~~l~~~~~ii~lSATl~n~~~~~~~l~~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 240 (720)
T 2zj8_A 163 LAHMLGKAQIIGLSATIGNPEELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAI--RKKKGA 240 (720)
T ss_dssp HHHHBTTBEEEEEECCCSCHHHHHHHTTEEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHH--HTTCCE
T ss_pred HHHhhcCCeEEEEcCCcCCHHHHHHHhCCcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHH--hCCCCE
Confidence 223334899999999983 33 4554433221110111100 111122233333 457999
Q ss_pred EEEcCCHHHHHHHHHHHHhcCCC--CC----------C---------------CeEEEeecCCCChhhHhhhhcCCCCCc
Q psy6094 190 LVFLPGWDTINSLHRSMCQSSFF--NS----------S---------------RFQIIPLHSMLPTVSQKSIFNTPPEGV 242 (455)
Q Consensus 190 LVFlp~~~ei~~l~~~L~~~~~~--~~----------~---------------~~~v~~lhs~l~~~~r~~v~~~~~~g~ 242 (455)
||||+++++++.+++.|.+.... .. . ...+.++||+|++++|..+++.|++|.
T Consensus 241 LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~ 320 (720)
T 2zj8_A 241 LIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGI 320 (720)
T ss_dssp EEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred EEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCC
Confidence 99999999999999998763110 00 0 023899999999999999999999999
Q ss_pred eEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCC---CCeEEecCChhh--
Q psy6094 243 RKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTL---KRSETQQYPNDV-- 317 (455)
Q Consensus 243 ~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~---~G~c~~L~t~~~-- 317 (455)
++||||||++|+|||+|++++||+.+ ..|| ..| ..|.|.+++.||+|||||.+ +|.||.++++..
T Consensus 321 ~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 321 IKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp SCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred CeEEEECcHhhccCCCCceEEEEcCC----eeec-CCC-----CccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH
Confidence 99999999999999999999999965 3466 223 26899999999999999987 599999999543
Q ss_pred -----hccCCCCcccccC-h--HH---HHH---------------HHh-hhc------CCCChhhHHhHHhhhhhccccc
Q psy6094 318 -----LNMLKDPELEGVN-N--DV---IFS---------------LLQ-HIC------TTQRPGAILVFLPGWDTINSLH 364 (455)
Q Consensus 318 -----~~~~~~PEi~r~~-~--~~---~L~---------------~l~-~~~------~~P~~~~i~~al~~L~~lgald 364 (455)
+-....+++...- . .+ ++. ++. .++ ++|..+.+..+++.|...|+|+
T Consensus 391 ~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~ 470 (720)
T 2zj8_A 391 EVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIE 470 (720)
T ss_dssp HHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCee
Confidence 2222333333322 2 12 111 111 111 1222367999999999999998
Q ss_pred -CCCCCCcccCChHHHHHhhCCCCh-------------------hHHHHHHHhhc-CcC
Q psy6094 365 -RSMCQSSFFNSCLLYEFAMVDNKP-------------------KEIITVRDCLS-FEC 402 (455)
Q Consensus 365 -~~~~l~~~~~T~lG~~l~~lp~~p-------------------~~~l~iaa~ls-f~~ 402 (455)
.++. .+.+|++|+.|+.+|++| .+++.|+|+.+ |..
T Consensus 471 ~~~~~--~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~ 527 (720)
T 2zj8_A 471 ISLED--KIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITP 527 (720)
T ss_dssp ECTTS--CEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCC
T ss_pred ECCCC--cEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccc
Confidence 6552 134599999999999999 16778888777 543
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=5.2e-31 Score=268.91 Aligned_cols=257 Identities=12% Similarity=0.180 Sum_probs=175.0
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh--------------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL-------------------- 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~-------------------- 94 (455)
.|.+...++.+.+.+..++..+.+++|.++++.+.+++++++.|+||||||+++. +++.
T Consensus 41 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 120 (414)
T 3eiq_A 41 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTREL 120 (414)
T ss_dssp CGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred CHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHH
Confidence 4556778999999999999999999999999999999999999999999997654 3332
Q ss_pred ---------hhc----CC-------------------------CCChHHHHHhc-c-CCCCcCcc------hHHHH----
Q psy6094 95 ---------KRS----ET-------------------------QQYPNDVLNML-K-DPELEGVN------NDVIF---- 124 (455)
Q Consensus 95 ---------e~~----~~-------------------------vg~p~~ll~~l-~-d~~L~~~~------~D~ll---- 124 (455)
+.+ .. +++|..|++.+ . ...+..++ +|.++
T Consensus 121 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~ 200 (414)
T 3eiq_A 121 AQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGF 200 (414)
T ss_dssp HHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTT
T ss_pred HHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCc
Confidence 000 00 11344566655 2 22333344 44433
Q ss_pred -HHHHHHHHhcCCCCeEEEEccCCCCC----------ccceEEe------ehhhhhhhhccCCCC-ChHHHHHHHHccCC
Q psy6094 125 -SLLQHICTTQRPGAILVYCTYTFMGV----------SPMKVFF------CKNVLQRLMKGVGAN-SPKRWVKLLRSMLV 186 (455)
Q Consensus 125 -~~lk~il~~~~~~~k~ilmSAT~~g~----------~pv~~~~------l~~~~~~~~~~~~~~-~~~~l~~~i~~~~~ 186 (455)
..+..++...+++.|+|+||||++.. .++.... .+.+.+.+....... ....+...+.....
T Consensus 201 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 280 (414)
T 3eiq_A 201 KDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTI 280 (414)
T ss_dssp HHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCC
Confidence 33555664667899999999999321 1111110 000001111111111 22235555555677
Q ss_pred CCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEe
Q psy6094 187 VPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVD 266 (455)
Q Consensus 187 g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID 266 (455)
+++|||++++++++.+++.|...+ +.+..+||++++++|.++++.|++|..+|||||+++++|+|+|++++||+
T Consensus 281 ~~~lvf~~~~~~~~~l~~~l~~~~------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~ 354 (414)
T 3eiq_A 281 TQAVIFINTRRKVDWLTEKMHARD------FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 354 (414)
T ss_dssp SSCEEECSCHHHHHHHHHHHHTTT------CCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHhcC------CeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEE
Confidence 899999999999999999999864 77999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 267 CGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 267 ~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
++. |.|.+++.||+|||||.|. |.||.+|+++
T Consensus 355 ~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 387 (414)
T 3eiq_A 355 YDL------------------PTNRENYIHRIGRGGRFGRKGVAINMVTEE 387 (414)
T ss_dssp SSC------------------CSSTHHHHHHSCCC-------CEEEEECST
T ss_pred eCC------------------CCCHHHhhhhcCcccCCCCCceEEEEEcHH
Confidence 554 4567889999999999975 9999999943
No 6
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.97 E-value=2e-31 Score=285.53 Aligned_cols=246 Identities=16% Similarity=0.083 Sum_probs=170.3
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh------------------------hhcCC---
Q psy6094 48 EMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL------------------------KRSET--- 99 (455)
Q Consensus 48 ~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~------------------------e~~~~--- 99 (455)
+.+++|..+|+|.+|+++++++.++++++++|+||||||++++ ++++ ..+..
T Consensus 208 e~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~ 287 (666)
T 3o8b_A 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNI 287 (666)
T ss_dssp HHHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEE
T ss_pred HhhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeE
Confidence 3477889999999999999999999999999999999999988 6654 11111
Q ss_pred -CC-------------ChHHHHHhccCCCCcCcc-------------hHHHHHHHHHHHHhcCCCCeEEEEccCCCCC--
Q psy6094 100 -QQ-------------YPNDVLNMLKDPELEGVN-------------NDVIFSLLQHICTTQRPGAILVYCTYTFMGV-- 150 (455)
Q Consensus 100 -vg-------------~p~~ll~~l~d~~L~~~~-------------~D~ll~~lk~il~~~~~~~k~ilmSAT~~g~-- 150 (455)
+| +|++|++.- .-.+.+++ .+..+..+.+.+ .......+++||||++..
T Consensus 288 ~vG~~~~~~~~~IlV~TPGrLl~~~-~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l-~~~~~~llil~SAT~~~~i~ 365 (666)
T 3o8b_A 288 RTGVRTITTGAPVTYSTYGKFLADG-GCSGGAYDIIICDECHSTDSTTILGIGTVLDQA-ETAGARLVVLATATPPGSVT 365 (666)
T ss_dssp ECSSCEECCCCSEEEEEHHHHHHTT-SCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHT-TTTTCSEEEEEESSCTTCCC
T ss_pred EECcEeccCCCCEEEECcHHHHhCC-CcccCcccEEEEccchhcCccHHHHHHHHHHhh-hhcCCceEEEECCCCCcccc
Confidence 11 355554321 11122222 333333344433 222333478889999665
Q ss_pred --ccceEEeehhhhhhhhccCCCCChHHHHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCCh
Q psy6094 151 --SPMKVFFCKNVLQRLMKGVGANSPKRWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPT 228 (455)
Q Consensus 151 --~pv~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~ 228 (455)
+|..... .............. + .+....++++|||++++++++.+++.|+..+ +.+..+||++++
T Consensus 366 ~~~p~i~~v-~~~~~~~i~~~~~~----~--~l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g------~~v~~lHG~l~q 432 (666)
T 3o8b_A 366 VPHPNIEEV-ALSNTGEIPFYGKA----I--PIEAIRGGRHLIFCHSKKKCDELAAKLSGLG------INAVAYYRGLDV 432 (666)
T ss_dssp CCCTTEEEE-ECBSCSSEEETTEE----E--CGGGSSSSEEEEECSCHHHHHHHHHHHHTTT------CCEEEECTTSCG
T ss_pred cCCcceEEE-eecccchhHHHHhh----h--hhhhccCCcEEEEeCCHHHHHHHHHHHHhCC------CcEEEecCCCCH
Confidence 2211000 00000000000000 0 0112467899999999999999999999864 789999999998
Q ss_pred hhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccc----cccCCCcccccccccchhhHHhhhcccCCC
Q psy6094 229 VSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSN----FDVKDNIATLKPEWISLANAKQRRGRAGRT 304 (455)
Q Consensus 229 ~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~----yd~~~~~~~l~~~~iSka~~~QR~GRaGR~ 304 (455)
++ ++++.++||||||+||+||||| |++|||+|+.+..+ |||..++... ..|+|.++|.||+|||||.
T Consensus 433 ~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~-~~P~s~~syiQRiGRtGRg 503 (666)
T 3o8b_A 433 SV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETT-TVPQDAVSRSQRRGRTGRG 503 (666)
T ss_dssp GG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEE-EEECBHHHHHHHHTTBCSS
T ss_pred HH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccc-cCcCCHHHHHHHhccCCCC
Confidence 75 2346679999999999999997 99999999988664 5677777654 6899999999999999996
Q ss_pred CCCeEEecCChhhh
Q psy6094 305 LKRSETQQYPNDVL 318 (455)
Q Consensus 305 ~~G~c~~L~t~~~~ 318 (455)
++|. |.||++++.
T Consensus 504 ~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 504 RRGI-YRFVTPGER 516 (666)
T ss_dssp SCEE-EEESCCCCB
T ss_pred CCCE-EEEEecchh
Confidence 6699 999997644
No 7
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.96 E-value=3.2e-30 Score=266.63 Aligned_cols=255 Identities=16% Similarity=0.190 Sum_probs=184.0
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc--hh---hhhh----------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH--LD---FITL---------------- 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq--lp---~ll~---------------- 94 (455)
.|.+..+++...+.+...+....+++|.+.++.+.++++++++|+||||||.+ +| .++.
T Consensus 57 ~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~ 136 (434)
T 2db3_A 57 HFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVS 136 (434)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEe
Confidence 35666788888998988888889999999999999999999999999999954 33 1110
Q ss_pred --------------h----hcCC------------------------CCChHHHHHhc--cCCCCcCcc------hHHHH
Q psy6094 95 --------------K----RSET------------------------QQYPNDVLNML--KDPELEGVN------NDVIF 124 (455)
Q Consensus 95 --------------e----~~~~------------------------vg~p~~ll~~l--~d~~L~~~~------~D~ll 124 (455)
. .+.. +++|.+|++.+ ....+..++ +|.++
T Consensus 137 PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~ 216 (434)
T 2db3_A 137 PTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRML 216 (434)
T ss_dssp SSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHT
T ss_pred cCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhh
Confidence 0 0001 11466677766 222345555 66655
Q ss_pred -----HHHHHHHHh--cCCCCeEEEEccCCCCC-c---------cceEEe------ehhhhhhhhccCCCCChHHHHHHH
Q psy6094 125 -----SLLQHICTT--QRPGAILVYCTYTFMGV-S---------PMKVFF------CKNVLQRLMKGVGANSPKRWVKLL 181 (455)
Q Consensus 125 -----~~lk~il~~--~~~~~k~ilmSAT~~g~-~---------pv~~~~------l~~~~~~~~~~~~~~~~~~l~~~i 181 (455)
..++.++.. .+++.|+++||||++.. . ++.... ..++.+.+.......+...+...+
T Consensus 217 ~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l 296 (434)
T 2db3_A 217 DMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEIL 296 (434)
T ss_dssp STTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHH
Confidence 335666633 36789999999999421 1 111000 000001111111111222355555
Q ss_pred HccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCe
Q psy6094 182 RSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDI 261 (455)
Q Consensus 182 ~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V 261 (455)
... .+.+||||+++++++.+++.|...+ +.+..+||++++.+|..+++.|++|..+|+|||+++++|||||+|
T Consensus 297 ~~~-~~~~lVF~~t~~~a~~l~~~L~~~~------~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v 369 (434)
T 2db3_A 297 SEQ-ADGTIVFVETKRGADFLASFLSEKE------FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNI 369 (434)
T ss_dssp HHC-CTTEEEECSSHHHHHHHHHHHHHTT------CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTC
T ss_pred HhC-CCCEEEEEeCcHHHHHHHHHHHhCC------CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccC
Confidence 533 4459999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCCh
Q psy6094 262 VYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPN 315 (455)
Q Consensus 262 ~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~ 315 (455)
++||+++. |.|.++|.||+||+||.|. |.|+.+|+.
T Consensus 370 ~~VI~~d~------------------p~~~~~y~qriGR~gR~g~~G~a~~~~~~ 406 (434)
T 2db3_A 370 KHVINYDM------------------PSKIDDYVHRIGRTGRVGNNGRATSFFDP 406 (434)
T ss_dssp CEEEESSC------------------CSSHHHHHHHHTTSSCTTCCEEEEEEECT
T ss_pred CEEEEECC------------------CCCHHHHHHHhcccccCCCCCEEEEEEec
Confidence 99999543 3467789999999999977 999999983
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.96 E-value=5.4e-30 Score=260.97 Aligned_cols=261 Identities=13% Similarity=0.127 Sum_probs=185.0
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcC--CeEEEEcCCCCCcccchh-hhhh-------------------
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNN--QITVISGETGSGPPLHLD-FITL------------------- 94 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~--~~vii~~~TGSGKTtqlp-~ll~------------------- 94 (455)
|.+...++...+.+...+....+++|.++++.+.++ +++++.|+||||||.++. .++.
T Consensus 27 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 106 (412)
T 3fht_A 27 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYE 106 (412)
T ss_dssp TGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred HhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHH
Confidence 445667888888888888888999999999999987 899999999999996643 2221
Q ss_pred ----------hh-----cC---------------------CCCChHHHHHhc-cCC--CCcCcc------hHHHHH----
Q psy6094 95 ----------KR-----SE---------------------TQQYPNDVLNML-KDP--ELEGVN------NDVIFS---- 125 (455)
Q Consensus 95 ----------e~-----~~---------------------~vg~p~~ll~~l-~d~--~L~~~~------~D~ll~---- 125 (455)
+. +. .+++|..+++.+ ... .+..++ +|.++.
T Consensus 107 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 186 (412)
T 3fht_A 107 LALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGH 186 (412)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTT
T ss_pred HHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCc
Confidence 00 00 011355566665 322 234444 454432
Q ss_pred --HHHHHHHhcCCCCeEEEEccCCCCC-ccc-------eE-Eeehh-------hhhhhhccCC-CCChHHHHHHHHccCC
Q psy6094 126 --LLQHICTTQRPGAILVYCTYTFMGV-SPM-------KV-FFCKN-------VLQRLMKGVG-ANSPKRWVKLLRSMLV 186 (455)
Q Consensus 126 --~lk~il~~~~~~~k~ilmSAT~~g~-~pv-------~~-~~l~~-------~~~~~~~~~~-~~~~~~l~~~i~~~~~ 186 (455)
.+..+....+++.++++||||++.. ... .. ..+.. ..+.+..... ......+...+....+
T Consensus 187 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 266 (412)
T 3fht_A 187 QDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITI 266 (412)
T ss_dssp HHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCC
Confidence 3444554567889999999999321 110 00 00000 0000000000 0011124444444677
Q ss_pred CCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEe
Q psy6094 187 VPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVD 266 (455)
Q Consensus 187 g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID 266 (455)
+++||||++..+++.+++.|...+ +.+..+||++++++|..+++.|++|..+|||||+++++|+|+|++++||+
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~~------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 340 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKEG------HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 340 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTT------CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhCC------CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE
Confidence 899999999999999999999874 67899999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCCh
Q psy6094 267 CGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPN 315 (455)
Q Consensus 267 ~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~ 315 (455)
++.+....+ +.|.+++.||+|||||.+. |.||.+++.
T Consensus 341 ~~~p~~~~~------------~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 378 (412)
T 3fht_A 341 FDLPVDKDG------------NPDNETYLHRIGRTGRFGKRGLAVNMVDS 378 (412)
T ss_dssp SSCCBCSSS------------SBCHHHHHHHHTTSSCTTCCEEEEEEECS
T ss_pred ECCCCCCCC------------CcchheeecccCcccCCCCCceEEEEEcC
Confidence 777644433 4678899999999999877 999999983
No 9
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.96 E-value=1.5e-29 Score=258.31 Aligned_cols=258 Identities=12% Similarity=0.198 Sum_probs=184.3
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh--------------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL-------------------- 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~-------------------- 94 (455)
.|.+..+++...+.+...+....+++|.++++.+.+++++++.++||||||.++. .++.
T Consensus 38 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L 117 (410)
T 2j0s_A 38 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTREL 117 (410)
T ss_dssp SGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHH
T ss_pred CHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHH
Confidence 3556678888888888888888999999999999999999999999999995543 2221
Q ss_pred ---------hhcC----------------------------CCCChHHHHHhc-c-CCCCcCcc------hHHHH-----
Q psy6094 95 ---------KRSE----------------------------TQQYPNDVLNML-K-DPELEGVN------NDVIF----- 124 (455)
Q Consensus 95 ---------e~~~----------------------------~vg~p~~ll~~l-~-d~~L~~~~------~D~ll----- 124 (455)
..+. .+++|.+|++.+ . ...+..++ +|.++
T Consensus 118 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~ 197 (410)
T 2j0s_A 118 AVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFK 197 (410)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTH
T ss_pred HHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhH
Confidence 0000 011344455555 2 22333344 44432
Q ss_pred HHHHHHHHhcCCCCeEEEEccCCCCC-c---------cceEEeehh------hhhhhhccCCCC-ChHHHHHHHHccCCC
Q psy6094 125 SLLQHICTTQRPGAILVYCTYTFMGV-S---------PMKVFFCKN------VLQRLMKGVGAN-SPKRWVKLLRSMLVV 187 (455)
Q Consensus 125 ~~lk~il~~~~~~~k~ilmSAT~~g~-~---------pv~~~~l~~------~~~~~~~~~~~~-~~~~l~~~i~~~~~g 187 (455)
..+..++...+++.++++||||++.. . |+....... +.+.+....... +...+...+.....+
T Consensus 198 ~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~ 277 (410)
T 2j0s_A 198 EQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT 277 (410)
T ss_dssp HHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCC
Confidence 34555664566889999999999432 1 111111000 000111111111 122344555555678
Q ss_pred CEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeC
Q psy6094 188 PILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDC 267 (455)
Q Consensus 188 ~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~ 267 (455)
++||||++.++++.+++.|...+ +.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||++
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~~------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~ 351 (410)
T 2j0s_A 278 QAVIFCNTKRKVDWLTEKMREAN------FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY 351 (410)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTT------CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEES
T ss_pred cEEEEEcCHHHHHHHHHHHHhCC------CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEE
Confidence 99999999999999999999864 678999999999999999999999999999999999999999999999995
Q ss_pred CCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChhh
Q psy6094 268 GKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPNDV 317 (455)
Q Consensus 268 g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~~ 317 (455)
+. |.|.+++.||+||+||.|. |.|+.++++++
T Consensus 352 ~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 384 (410)
T 2j0s_A 352 DL------------------PNNRELYIHRIGRSGRYGRKGVAINFVKNDD 384 (410)
T ss_dssp SC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGG
T ss_pred CC------------------CCCHHHHHHhcccccCCCCceEEEEEecHHH
Confidence 53 3567889999999999865 99999999543
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.96 E-value=2.2e-28 Score=247.23 Aligned_cols=262 Identities=17% Similarity=0.197 Sum_probs=183.9
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcC--CeEEEEcCCCCCcccchh-hhhh------------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNN--QITVISGETGSGPPLHLD-FITL------------------ 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~--~~vii~~~TGSGKTtqlp-~ll~------------------ 94 (455)
.|.+..+++...+.+...+....+++|.++++.+.++ +++++.++||||||+++. +++.
T Consensus 6 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 85 (395)
T 3pey_A 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSR 85 (395)
T ss_dssp SSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCH
Confidence 3455667888888888888889999999999999988 899999999999996544 3222
Q ss_pred -----------hhcC------------------------CCCChHHHHHhc-c-CCCCcCcc------hHHHH------H
Q psy6094 95 -----------KRSE------------------------TQQYPNDVLNML-K-DPELEGVN------NDVIF------S 125 (455)
Q Consensus 95 -----------e~~~------------------------~vg~p~~ll~~l-~-d~~L~~~~------~D~ll------~ 125 (455)
+.+. .+++|..+++.+ . ...+..++ +|.+. .
T Consensus 86 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~ 165 (395)
T 3pey_A 86 ELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGD 165 (395)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHH
T ss_pred HHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHH
Confidence 0000 011344555555 2 22344444 34333 2
Q ss_pred HHHHHHHhcCCCCeEEEEccCCCCC-c-------cc-eEEeehh-------hhhhhhccCCC-CChHHHHHHHHccCCCC
Q psy6094 126 LLQHICTTQRPGAILVYCTYTFMGV-S-------PM-KVFFCKN-------VLQRLMKGVGA-NSPKRWVKLLRSMLVVP 188 (455)
Q Consensus 126 ~lk~il~~~~~~~k~ilmSAT~~g~-~-------pv-~~~~l~~-------~~~~~~~~~~~-~~~~~l~~~i~~~~~g~ 188 (455)
.+..+....+++.++++||||++.. . +- ....... ..+.+...... .....+...+.....++
T Consensus 166 ~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 245 (395)
T 3pey_A 166 QCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGS 245 (395)
T ss_dssp HHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSE
T ss_pred HHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCC
Confidence 3444454567789999999999321 0 00 0000000 00000000000 00111333444456789
Q ss_pred EEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCC
Q psy6094 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCG 268 (455)
Q Consensus 189 iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g 268 (455)
+|||+++..+++.+++.|+..+ +.+..+||++++++|.++++.|++|..+|||||+++++|+|+|++++||+++
T Consensus 246 ~lvf~~~~~~~~~l~~~l~~~~------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 319 (395)
T 3pey_A 246 SIIFVATKKTANVLYGKLKSEG------HEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYD 319 (395)
T ss_dssp EEEECSCHHHHHHHHHHHHHTT------CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESS
T ss_pred EEEEeCCHHHHHHHHHHHHhcC------CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcC
Confidence 9999999999999999999874 6789999999999999999999999999999999999999999999999966
Q ss_pred CCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCCh
Q psy6094 269 KTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPN 315 (455)
Q Consensus 269 ~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~ 315 (455)
.++ +...+.|.+++.||+|||||.+. |.|+.+++.
T Consensus 320 ~p~------------~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 355 (395)
T 3pey_A 320 LPT------------LANGQADPATYIHRIGRTGRFGRKGVAISFVHD 355 (395)
T ss_dssp CCB------------CTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECS
T ss_pred CCC------------CCcCCCCHHHhhHhccccccCCCCceEEEEEec
Confidence 543 22346789999999999999877 999999983
No 11
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.96 E-value=3.9e-29 Score=260.40 Aligned_cols=231 Identities=18% Similarity=0.190 Sum_probs=159.9
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCcccchh-hhhhh---h----------------------cCCCC----------Ch---
Q psy6094 63 DAVLDMVRNNQITVISGETGSGPPLHLD-FITLK---R----------------------SETQQ----------YP--- 103 (455)
Q Consensus 63 ~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~e---~----------------------~~~vg----------~p--- 103 (455)
+...+++.++++++++|+||||||+++. +++.. . |..++ +|
T Consensus 12 ~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~~v~~~~~~~~~~~t~~~~ 91 (459)
T 2z83_A 12 RGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGLPVRYQTSAVQREHQGNEI 91 (459)
T ss_dssp ---CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTSCEEECC--------CCCS
T ss_pred HHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCceEeEEecccccCCCCCcE
Confidence 3345668889999999999999998744 33320 0 11111 01
Q ss_pred ------HHHHHhc-cCCCCcCcc-------------hHHHHHHHHHHHHhcCCCCeEEEEccCCCCC-c-------cceE
Q psy6094 104 ------NDVLNML-KDPELEGVN-------------NDVIFSLLQHICTTQRPGAILVYCTYTFMGV-S-------PMKV 155 (455)
Q Consensus 104 ------~~ll~~l-~d~~L~~~~-------------~D~ll~~lk~il~~~~~~~k~ilmSAT~~g~-~-------pv~~ 155 (455)
..+.+.+ .++.+.+++ .++.+++++... ..++.|+|+||||++.. . |+..
T Consensus 92 i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~--~~~~~~~il~SAT~~~~~~~~~~~~~pi~~ 169 (459)
T 2z83_A 92 VDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKV--ELGEAAAIFMTATPPGTTDPFPDSNAPIHD 169 (459)
T ss_dssp EEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH--HTTSCEEEEECSSCTTCCCSSCCCSSCEEE
T ss_pred EEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHh--ccCCccEEEEEcCCCcchhhhccCCCCeEE
Confidence 1155555 556666666 255556666654 35789999999999654 2 2211
Q ss_pred EeehhhhhhhhccCCCCChHHHHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhh
Q psy6094 156 FFCKNVLQRLMKGVGANSPKRWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIF 235 (455)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~ 235 (455)
... . ..... ...+..++. ..++++||||+++++++.+++.|+..+ +.+..+||. +|.+++
T Consensus 170 --~~~---~-~~~~~---~~~~~~~l~-~~~~~~LVF~~s~~~~~~l~~~L~~~g------~~v~~lh~~----~R~~~~ 229 (459)
T 2z83_A 170 --LQD---E-IPDRA---WSSGYEWIT-EYAGKTVWFVASVKMGNEIAMCLQRAG------KKVIQLNRK----SYDTEY 229 (459)
T ss_dssp --EEC---C-CCSSC---CSSCCHHHH-HCCSCEEEECSCHHHHHHHHHHHHHTT------CCEEEESTT----CCCCCG
T ss_pred --ecc---c-CCcch---hHHHHHHHH-hcCCCEEEEeCChHHHHHHHHHHHhcC------CcEEecCHH----HHHHHH
Confidence 100 0 00000 001123333 347899999999999999999999874 789999984 788999
Q ss_pred cCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccc--cCCCcccccccccchhhHHhhhcccCCCC--CCeEEe
Q psy6094 236 NTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFD--VKDNIATLKPEWISLANAKQRRGRAGRTL--KRSETQ 311 (455)
Q Consensus 236 ~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd--~~~~~~~l~~~~iSka~~~QR~GRaGR~~--~G~c~~ 311 (455)
+.|++|..+||||||++|+|||||+ ++|||+|..+.+.|+ ....+..+...|.|+++|.||+|||||.+ +|.||.
T Consensus 230 ~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~ 308 (459)
T 2z83_A 230 PKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYH 308 (459)
T ss_dssp GGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEE
T ss_pred hhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEE
Confidence 9999999999999999999999999 999999988877764 33333333559999999999999999987 799999
Q ss_pred cCChh
Q psy6094 312 QYPND 316 (455)
Q Consensus 312 L~t~~ 316 (455)
+++..
T Consensus 309 ~~~~~ 313 (459)
T 2z83_A 309 YGGAT 313 (459)
T ss_dssp ECSCC
T ss_pred EEccc
Confidence 99854
No 12
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.96 E-value=1.3e-28 Score=250.34 Aligned_cols=258 Identities=11% Similarity=0.123 Sum_probs=183.5
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh--------------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL-------------------- 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~-------------------- 94 (455)
.|++..+++.+.+.+...+.-..+++|.++++.+.+++++++.++||||||+++. .++.
T Consensus 22 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 101 (400)
T 1s2m_A 22 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTREL 101 (400)
T ss_dssp CGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHH
Confidence 4667778888888888888888999999999999999999999999999996533 2221
Q ss_pred ---------hh----cCC------------------------CCChHHHHHhc-c-CCCCcCcc------hHHH-----H
Q psy6094 95 ---------KR----SET------------------------QQYPNDVLNML-K-DPELEGVN------NDVI-----F 124 (455)
Q Consensus 95 ---------e~----~~~------------------------vg~p~~ll~~l-~-d~~L~~~~------~D~l-----l 124 (455)
+. +.. +++|..+++.+ . ...+..++ +|.+ .
T Consensus 102 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~ 181 (400)
T 1s2m_A 102 ALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFK 181 (400)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHH
T ss_pred HHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchH
Confidence 00 000 11244455544 2 22344444 3322 2
Q ss_pred HHHHHHHHhcCCCCeEEEEccCCCCC----------ccceEEeehhh-----hhhhhccCCCCChHHHHHHHHccCCCCE
Q psy6094 125 SLLQHICTTQRPGAILVYCTYTFMGV----------SPMKVFFCKNV-----LQRLMKGVGANSPKRWVKLLRSMLVVPI 189 (455)
Q Consensus 125 ~~lk~il~~~~~~~k~ilmSAT~~g~----------~pv~~~~l~~~-----~~~~~~~~~~~~~~~l~~~i~~~~~g~i 189 (455)
..++.++...++..++++||||++.. .|......+.. .+.+.......+...+...+.....+++
T Consensus 182 ~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~ 261 (400)
T 1s2m_A 182 TIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQA 261 (400)
T ss_dssp HHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEE
T ss_pred HHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHHHHHhhcCCCcE
Confidence 34566664556789999999999321 11111111100 0000001111111234455555677899
Q ss_pred EEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCC
Q psy6094 190 LVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGK 269 (455)
Q Consensus 190 LVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~ 269 (455)
||||++.++++.+++.|...+ +.+..+||++++++|..+++.|++|..+|||||+++++|+|+|++++||+++.
T Consensus 262 lVf~~~~~~~~~l~~~L~~~~------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~ 335 (400)
T 1s2m_A 262 IIFCNSTNRVELLAKKITDLG------YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDF 335 (400)
T ss_dssp EEECSSHHHHHHHHHHHHHHT------CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSC
T ss_pred EEEEecHHHHHHHHHHHHhcC------CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCC
Confidence 999999999999999999864 67899999999999999999999999999999999999999999999998553
Q ss_pred CcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChhh
Q psy6094 270 TKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPNDV 317 (455)
Q Consensus 270 ~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~~ 317 (455)
|.|.+++.||+|||||.|. |.||.+|+.++
T Consensus 336 ------------------p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~ 366 (400)
T 1s2m_A 336 ------------------PKTAETYLHRIGRSGRFGHLGLAINLINWND 366 (400)
T ss_dssp ------------------CSSHHHHHHHHCBSSCTTCCEEEEEEECGGG
T ss_pred ------------------CCCHHHHHHhcchhcCCCCCceEEEEeccch
Confidence 4577889999999999865 99999999653
No 13
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.95 E-value=6.3e-30 Score=274.85 Aligned_cols=249 Identities=16% Similarity=0.166 Sum_probs=174.5
Q ss_pred cCHHHHHHHHH--HccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh------------------------
Q psy6094 42 QSRRYQEMLEA--RKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL------------------------ 94 (455)
Q Consensus 42 ~~~~~~~~l~~--R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~------------------------ 94 (455)
.+++|.+.+.+ |+.+|+|.+ .++.+.++++++++|+||||||+++. .++.
T Consensus 157 ~~~~~~~~l~~~~~~~lpiq~~---~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~ 233 (618)
T 2whx_A 157 KSGDYVSAITQAERIGEPDYEV---DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEE 233 (618)
T ss_dssp -----CEECBCCCCCCCCCCCC---CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHH
T ss_pred chHHHHHHHhhccccCCCcccc---CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHH
Confidence 45556665544 888999865 39999999999999999999998743 3332
Q ss_pred hh-cCC----------CCChH---------HHHHhc-cCCCCcCcc-------------hHHHHHHHHHHHHhcCCCCeE
Q psy6094 95 KR-SET----------QQYPN---------DVLNML-KDPELEGVN-------------NDVIFSLLQHICTTQRPGAIL 140 (455)
Q Consensus 95 e~-~~~----------vg~p~---------~ll~~l-~d~~L~~~~-------------~D~ll~~lk~il~~~~~~~k~ 140 (455)
.. +.. +++|. .+.+++ .++.+.+++ .+..+..++..+ .+++.|+
T Consensus 234 ~l~~~~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l--~~~~~q~ 311 (618)
T 2whx_A 234 ALRGLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRV--EMGEAAA 311 (618)
T ss_dssp HTTTSCEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHH--HHTSCEE
T ss_pred HhcCCceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHh--cccCccE
Confidence 00 111 11222 255555 556666666 233444444443 2378999
Q ss_pred EEEccCCCCC-ccceE-----EeehhhhhhhhccCCCCChHHHHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCC
Q psy6094 141 VYCTYTFMGV-SPMKV-----FFCKNVLQRLMKGVGANSPKRWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNS 214 (455)
Q Consensus 141 ilmSAT~~g~-~pv~~-----~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~ 214 (455)
|+||||+++. ..+.. ...+.. + ..... ..+..++. ..++++||||+++++++.+++.|...+
T Consensus 312 il~SAT~~~~~~~~~~~~~~~~~v~~~---~---~~~~~-~~ll~~l~-~~~~~~LVF~~s~~~a~~l~~~L~~~g---- 379 (618)
T 2whx_A 312 IFMTATPPGSTDPFPQSNSPIEDIERE---I---PERSW-NTGFDWIT-DYQGKTVWFVPSIKAGNDIANCLRKSG---- 379 (618)
T ss_dssp EEECSSCTTCCCSSCCCSSCEEEEECC---C---CSSCC-SSSCHHHH-HCCSCEEEECSSHHHHHHHHHHHHHTT----
T ss_pred EEEECCCchhhhhhhccCCceeeeccc---C---CHHHH-HHHHHHHH-hCCCCEEEEECChhHHHHHHHHHHHcC----
Confidence 9999999654 22111 011000 0 00000 11223333 357899999999999999999999874
Q ss_pred CCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCccccc--ccCCCcccccccccchh
Q psy6094 215 SRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNF--DVKDNIATLKPEWISLA 292 (455)
Q Consensus 215 ~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~y--d~~~~~~~l~~~~iSka 292 (455)
+.+..+||. +|.++++.|++|..+||||||++|+||||| |++|||+|+.+.+.+ +...++......|+|.+
T Consensus 380 --~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~ 452 (618)
T 2whx_A 380 --KRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPA 452 (618)
T ss_dssp --CCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHH
T ss_pred --CcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHH
Confidence 779999984 788899999999999999999999999997 999999999877655 44455667778899999
Q ss_pred hHHhhhcccCCCC--CCeEEecCC
Q psy6094 293 NAKQRRGRAGRTL--KRSETQQYP 314 (455)
Q Consensus 293 ~~~QR~GRaGR~~--~G~c~~L~t 314 (455)
+|.||+|||||.+ +|.||.+++
T Consensus 453 ~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 453 SAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp HHHHHHTTSSCCTTCCCEEEEECS
T ss_pred HHHHhccccCCCCCCCCeEEEEcc
Confidence 9999999999986 699999997
No 14
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=2e-28 Score=245.04 Aligned_cols=255 Identities=16% Similarity=0.149 Sum_probs=180.8
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcC-CeEEEEcCCCCCcccchh-hhhh--------------------
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNN-QITVISGETGSGPPLHLD-FITL-------------------- 94 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~-~~vii~~~TGSGKTtqlp-~ll~-------------------- 94 (455)
|.+...++...+.++..+.-..+++|.++++.+.++ +++++.|+||||||+++. .++.
T Consensus 8 f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~ 87 (367)
T 1hv8_A 8 FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELA 87 (367)
T ss_dssp GGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHH
T ss_pred hhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHH
Confidence 445567788888888888888999999999998877 799999999999997644 2222
Q ss_pred --------hh----cCC-----------------------CCChHHHHHhc-c-CCCCcCcc------hHHHH-----HH
Q psy6094 95 --------KR----SET-----------------------QQYPNDVLNML-K-DPELEGVN------NDVIF-----SL 126 (455)
Q Consensus 95 --------e~----~~~-----------------------vg~p~~ll~~l-~-d~~L~~~~------~D~ll-----~~ 126 (455)
.. +.. +++|..+++.+ . ...+..++ +|.+. ..
T Consensus 88 ~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~ 167 (367)
T 1hv8_A 88 IQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKD 167 (367)
T ss_dssp HHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHH
T ss_pred HHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHH
Confidence 00 000 11233455555 2 22344554 44332 33
Q ss_pred HHHHHHhcCCCCeEEEEccCCCCC-cc------ceEEeeh-----hhhhhhhccCCCCChHHHHHHHHccCCCCEEEEcC
Q psy6094 127 LQHICTTQRPGAILVYCTYTFMGV-SP------MKVFFCK-----NVLQRLMKGVGANSPKRWVKLLRSMLVVPILVFLP 194 (455)
Q Consensus 127 lk~il~~~~~~~k~ilmSAT~~g~-~p------v~~~~l~-----~~~~~~~~~~~~~~~~~l~~~i~~~~~g~iLVFlp 194 (455)
+..++...+++.++++||||++.. .. ....+.. .+.+.+...........+...+. ..++.+||||+
T Consensus 168 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~ 246 (367)
T 1hv8_A 168 VEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKINANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCK 246 (367)
T ss_dssp HHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSSSSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEECS
T ss_pred HHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCCCCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEEC
Confidence 455554567889999999999321 10 0000000 00011111111111222444444 67789999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccc
Q psy6094 195 GWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSN 274 (455)
Q Consensus 195 ~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~ 274 (455)
+.++++.+++.|...+ +.+..+||+++..+|.++++.|++|..+|+|||+++++|+|+|++++||+++.
T Consensus 247 ~~~~~~~l~~~L~~~~------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~----- 315 (367)
T 1hv8_A 247 TKRDTKELASMLRDIG------FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHL----- 315 (367)
T ss_dssp SHHHHHHHHHHHHHTT------CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSC-----
T ss_pred CHHHHHHHHHHHHhcC------CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecC-----
Confidence 9999999999999864 67899999999999999999999999999999999999999999999999554
Q ss_pred cccCCCcccccccccchhhHHhhhcccCCCC-CCeEEecCChh
Q psy6094 275 FDVKDNIATLKPEWISLANAKQRRGRAGRTL-KRSETQQYPND 316 (455)
Q Consensus 275 yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~-~G~c~~L~t~~ 316 (455)
|.|..++.||+||+||.+ +|.||.+++.+
T Consensus 316 -------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 345 (367)
T 1hv8_A 316 -------------PQNPESYMHRIGRTGRAGKKGKAISIINRR 345 (367)
T ss_dssp -------------CSCHHHHHHHSTTTCCSSSCCEEEEEECTT
T ss_pred -------------CCCHHHhhhcccccccCCCccEEEEEEcHH
Confidence 457788999999999997 59999999954
No 15
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.95 E-value=7.4e-30 Score=266.73 Aligned_cols=263 Identities=13% Similarity=0.131 Sum_probs=80.0
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcC--CeEEEEcCCCCCcccchh-hhhh------------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNN--QITVISGETGSGPPLHLD-FITL------------------ 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~--~~vii~~~TGSGKTtqlp-~ll~------------------ 94 (455)
.|....+++...+.+...+....+++|.++++.+.++ +++++.|+||||||.++. .++.
T Consensus 93 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~ 172 (479)
T 3fmp_B 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 172 (479)
T ss_dssp CSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSH
T ss_pred CHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChH
Confidence 3556778888888898899999999999999999987 999999999999996533 2221
Q ss_pred -----------hh--------------------c------CCCCChHHHHHhc-cCC--CCcCcc------hHHHHH---
Q psy6094 95 -----------KR--------------------S------ETQQYPNDVLNML-KDP--ELEGVN------NDVIFS--- 125 (455)
Q Consensus 95 -----------e~--------------------~------~~vg~p~~ll~~l-~d~--~L~~~~------~D~ll~--- 125 (455)
+. + ..||+|.+|++++ ... .+..++ +|.++.
T Consensus 173 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~ 252 (479)
T 3fmp_B 173 ELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 252 (479)
T ss_dssp HHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCC
Confidence 00 0 0122466677776 322 234444 554442
Q ss_pred ---HHHHHHHhcCCCCeEEEEccCCCCC--------ccceE-Eee-------hhhhhhhhccCC-CCChHHHHHHHHccC
Q psy6094 126 ---LLQHICTTQRPGAILVYCTYTFMGV--------SPMKV-FFC-------KNVLQRLMKGVG-ANSPKRWVKLLRSML 185 (455)
Q Consensus 126 ---~lk~il~~~~~~~k~ilmSAT~~g~--------~pv~~-~~l-------~~~~~~~~~~~~-~~~~~~l~~~i~~~~ 185 (455)
.+..+....+++.++|+||||++.. .+... ..+ +...+.+..... ......+...+....
T Consensus 253 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 332 (479)
T 3fmp_B 253 HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAIT 332 (479)
T ss_dssp HHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------------
T ss_pred cHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhcc
Confidence 3444554556789999999999431 11110 011 111111111111 011111223333345
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEE
Q psy6094 186 VVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVV 265 (455)
Q Consensus 186 ~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VI 265 (455)
.+++||||+++..++.+++.|...+ +.+..+||++++.+|..+++.|++|..+|||||+++++|||+|+|++||
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~~------~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI 406 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKEG------HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI 406 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhCC------ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEE
Confidence 6899999999999999999998764 7899999999999999999999999999999999999999999999999
Q ss_pred eCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 266 DCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 266 D~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
+++++....+ +.|..+|.||+|||||.+. |.|+.+|+..
T Consensus 407 ~~d~p~~~~~------------~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~ 446 (479)
T 3fmp_B 407 NFDLPVDKDG------------NPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446 (479)
T ss_dssp ----------------------------------------------------
T ss_pred EecCCCCCcc------------CCCHHHHHHHhcccccCCCCceEEEEEcCc
Confidence 9666533321 4566789999999999877 9999999843
No 16
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.95 E-value=3.5e-28 Score=248.37 Aligned_cols=257 Identities=15% Similarity=0.163 Sum_probs=178.0
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc--hhh---hh------------------
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH--LDF---IT------------------ 93 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq--lp~---ll------------------ 93 (455)
|.+...++...+.++..+....+++|.++++++.++++++++|+||||||.. +|. +.
T Consensus 17 f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (417)
T 2i4i_A 17 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYG 96 (417)
T ss_dssp GGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTB
T ss_pred HhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccc
Confidence 3445577888888888888899999999999999999999999999999953 331 10
Q ss_pred ------------h-------------hh----cC------------------------CCCChHHHHHhc-cC-CCCcCc
Q psy6094 94 ------------L-------------KR----SE------------------------TQQYPNDVLNML-KD-PELEGV 118 (455)
Q Consensus 94 ------------~-------------e~----~~------------------------~vg~p~~ll~~l-~d-~~L~~~ 118 (455)
+ +. +. .+++|.+|++.+ .. ..+..+
T Consensus 97 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 176 (417)
T 2i4i_A 97 RRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFC 176 (417)
T ss_dssp SCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred cccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhC
Confidence 0 00 00 011344455555 22 234444
Q ss_pred c------hHHHH-----HHHHHHHHh--cC--CCCeEEEEccCCCCC-c---------cceEEee------hhhhhhhhc
Q psy6094 119 N------NDVIF-----SLLQHICTT--QR--PGAILVYCTYTFMGV-S---------PMKVFFC------KNVLQRLMK 167 (455)
Q Consensus 119 ~------~D~ll-----~~lk~il~~--~~--~~~k~ilmSAT~~g~-~---------pv~~~~l------~~~~~~~~~ 167 (455)
+ +|.++ ..++.++.. .. ...++++||||++.. . ++....- +.+.+.+..
T Consensus 177 ~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 256 (417)
T 2i4i_A 177 KYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVW 256 (417)
T ss_dssp CEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEE
T ss_pred cEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEE
Confidence 4 55544 235555521 12 268899999999421 0 1100000 000001111
Q ss_pred cCCCCChHHHHHHHHc-cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEE
Q psy6094 168 GVGANSPKRWVKLLRS-MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIV 246 (455)
Q Consensus 168 ~~~~~~~~~l~~~i~~-~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVi 246 (455)
.........+...+.. ..++.+||||++.++++.+++.|...+ +.+..+||++++++|..+++.|++|..+|+
T Consensus 257 ~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 330 (417)
T 2i4i_A 257 VEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG------YACTSIHGDRSQRDREEALHQFRSGKSPIL 330 (417)
T ss_dssp CCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT------CCEEEECTTSCHHHHHHHHHHHHHTSSCEE
T ss_pred eccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC------CCeeEecCCCCHHHHHHHHHHHHcCCCCEE
Confidence 1111112234555554 357789999999999999999999864 789999999999999999999999999999
Q ss_pred EeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChhh
Q psy6094 247 LATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPNDV 317 (455)
Q Consensus 247 vaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~~ 317 (455)
|||+++++|+|+|++++||+++. |.|..++.||+||+||.+. |.||.+|++++
T Consensus 331 vaT~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 384 (417)
T 2i4i_A 331 VATAVAARGLDISNVKHVINFDL------------------PSDIEEYVHRIGRTGRVGNLGLATSFFNERN 384 (417)
T ss_dssp EECHHHHTTSCCCCEEEEEESSC------------------CSSHHHHHHHHTTBCC--CCEEEEEEECGGG
T ss_pred EECChhhcCCCcccCCEEEEEcC------------------CCCHHHHHHhcCccccCCCCceEEEEEcccc
Confidence 99999999999999999999554 3577889999999999976 99999999654
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.95 E-value=6.8e-28 Score=243.94 Aligned_cols=256 Identities=14% Similarity=0.148 Sum_probs=182.2
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh--------------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL-------------------- 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~-------------------- 94 (455)
.|++...++.+.+.+...+.-..+++|.++++.+.+++++++.++||||||.+.. .++.
T Consensus 9 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L 88 (391)
T 1xti_A 9 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTREL 88 (391)
T ss_dssp CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHH
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHH
Confidence 3556677888888888888888999999999999999999999999999996532 2221
Q ss_pred ---------hh-----cCCC-------------------------CChHHHHHhc-c-CCCCcCcc------hHHHH---
Q psy6094 95 ---------KR-----SETQ-------------------------QYPNDVLNML-K-DPELEGVN------NDVIF--- 124 (455)
Q Consensus 95 ---------e~-----~~~v-------------------------g~p~~ll~~l-~-d~~L~~~~------~D~ll--- 124 (455)
+. +..+ ++|..+++.+ . ...+..++ +|.++
T Consensus 89 ~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~ 168 (391)
T 1xti_A 89 AFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQL 168 (391)
T ss_dssp HHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSH
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhcc
Confidence 00 1111 1233344444 2 12234444 44332
Q ss_pred ---HHHHHHHHhcCCCCeEEEEccCCCCC-c---------cceEEeehh-------hhhhhhccCCCCChHHHHHHHHcc
Q psy6094 125 ---SLLQHICTTQRPGAILVYCTYTFMGV-S---------PMKVFFCKN-------VLQRLMKGVGANSPKRWVKLLRSM 184 (455)
Q Consensus 125 ---~~lk~il~~~~~~~k~ilmSAT~~g~-~---------pv~~~~l~~-------~~~~~~~~~~~~~~~~l~~~i~~~ 184 (455)
..+..++...+++.++++||||++.. . |.....-.. ..+.+...........+...+...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 248 (391)
T 1xti_A 169 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL 248 (391)
T ss_dssp HHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHS
T ss_pred chHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhc
Confidence 23455554556789999999999432 1 111111000 000011111111222355566556
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEE
Q psy6094 185 LVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYV 264 (455)
Q Consensus 185 ~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~V 264 (455)
..+++|||+++.++++.+++.|...+ +.+..+||++++++|..+++.|++|..+|||||+++++|+|+|++++|
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~V 322 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQN------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA 322 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTT------CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEE
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCC------CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEE
Confidence 78899999999999999999999864 678999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCCh
Q psy6094 265 VDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPN 315 (455)
Q Consensus 265 ID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~ 315 (455)
|+++. |.|.+++.||+||+||.+. |.|+.+++.
T Consensus 323 i~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~ 356 (391)
T 1xti_A 323 FNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITFVSD 356 (391)
T ss_dssp EESSC------------------CSSHHHHHHHHCBCSSSCCCCEEEEEECS
T ss_pred EEeCC------------------CCCHHHHHHhcccccCCCCceEEEEEEcc
Confidence 99554 3477889999999999875 999999984
No 18
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.95 E-value=1.9e-28 Score=254.57 Aligned_cols=194 Identities=15% Similarity=0.097 Sum_probs=138.5
Q ss_pred hHHHHHhc-cCCCCcCcc-------------hHHHHHHHHHHHHhcCCCCeEEEEccCCCCC-ccceEEeehhhhhhhhc
Q psy6094 103 PNDVLNML-KDPELEGVN-------------NDVIFSLLQHICTTQRPGAILVYCTYTFMGV-SPMKVFFCKNVLQRLMK 167 (455)
Q Consensus 103 p~~ll~~l-~d~~L~~~~-------------~D~ll~~lk~il~~~~~~~k~ilmSAT~~g~-~pv~~~~l~~~~~~~~~ 167 (455)
++.+.+++ .++.+.+++ .+.++..+... ...++.|+|+||||++.. ..... .+.......
T Consensus 95 ~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~--~~~~~~~~i~~SAT~~~~~~~~~~---~~~~~~~~~ 169 (451)
T 2jlq_A 95 HATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTR--VEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIE 169 (451)
T ss_dssp HHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHH--HHTTSCEEEEECSSCTTCCCSSCC---CSSCEEEEE
T ss_pred hHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHh--hcCCCceEEEEccCCCccchhhhc---CCCceEecC
Confidence 33466666 666666666 23333333322 245789999999999654 22110 000000000
Q ss_pred cCCCCC-hHHHHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEE
Q psy6094 168 GVGANS-PKRWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIV 246 (455)
Q Consensus 168 ~~~~~~-~~~l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVi 246 (455)
...+.. -..+..++. ...+++||||+++++++.+++.|+..+ +.+..+||.+ +.++++.|++|..+||
T Consensus 170 ~~~p~~~~~~~~~~l~-~~~~~~lVF~~s~~~a~~l~~~L~~~g------~~~~~lh~~~----~~~~~~~f~~g~~~vL 238 (451)
T 2jlq_A 170 REIPERSWNTGFDWIT-DYQGKTVWFVPSIKAGNDIANCLRKSG------KRVIQLSRKT----FDTEYPKTKLTDWDFV 238 (451)
T ss_dssp CCCCSSCCSSSCHHHH-HCCSCEEEECSSHHHHHHHHHHHHTTT------CCEEEECTTT----HHHHGGGGGSSCCSEE
T ss_pred ccCCchhhHHHHHHHH-hCCCCEEEEcCCHHHHHHHHHHHHHcC------CeEEECCHHH----HHHHHHhhccCCceEE
Confidence 000000 000123333 457899999999999999999998764 7788999964 4578999999999999
Q ss_pred EeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccc---cccchhhHHhhhcccCCCC--CCeEEecCC
Q psy6094 247 LATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKP---EWISLANAKQRRGRAGRTL--KRSETQQYP 314 (455)
Q Consensus 247 vaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~---~~iSka~~~QR~GRaGR~~--~G~c~~L~t 314 (455)
||||++|+|||||+ ++|||+|+.+...|| ..+...+.. .|.|.++|.||+|||||.+ +|.||.++.
T Consensus 239 VaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 239 VTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp EECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred EECCHHHhCcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 99999999999999 999999999999988 556666665 9999999999999999988 689998876
No 19
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.94 E-value=1.7e-27 Score=246.63 Aligned_cols=175 Identities=20% Similarity=0.175 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEccCCCCC-ccceEEe--ehhhhhhhhccCCCCChHHHHHHHHccCCCCEEEEcCCHHH
Q psy6094 122 VIFSLLQHICTTQRPGAILVYCTYTFMGV-SPMKVFF--CKNVLQRLMKGVGANSPKRWVKLLRSMLVVPILVFLPGWDT 198 (455)
Q Consensus 122 ~ll~~lk~il~~~~~~~k~ilmSAT~~g~-~pv~~~~--l~~~~~~~~~~~~~~~~~~l~~~i~~~~~g~iLVFlp~~~e 198 (455)
..++.+..+. .+++.++++||||++.. ....... ..... ... ...... .+...+. ..++++|||||++++
T Consensus 117 ~~~~~~~~~~--~~~~~~~l~~SAT~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~-~~~~~l~-~~~~~~lVF~~s~~~ 189 (440)
T 1yks_A 117 AARGWAAHRA--RANESATILMTATPPGTSDEFPHSNGEIEDVQ-TDI--PSEPWN-TGHDWIL-ADKRPTAWFLPSIRA 189 (440)
T ss_dssp HHHHHHHHHH--HTTSCEEEEECSSCTTCCCSSCCCSSCEEEEE-CCC--CSSCCS-SSCHHHH-HCCSCEEEECSCHHH
T ss_pred HHHHHHHHHh--ccCCceEEEEeCCCCchhhhhhhcCCCeeEee-ecc--ChHHHH-HHHHHHH-hcCCCEEEEeCCHHH
Confidence 4455666654 25679999999999544 2111000 00000 000 000001 1223333 347899999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCccccc-cc
Q psy6094 199 INSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNF-DV 277 (455)
Q Consensus 199 i~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~y-d~ 277 (455)
++.+++.|+..+ +.+..+|| ++|.++++.|++|..+|||||+++|+||||| +++|||+|..+.+.| +.
T Consensus 190 a~~l~~~L~~~~------~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~ 258 (440)
T 1yks_A 190 ANVMAASLRKAG------KSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDE 258 (440)
T ss_dssp HHHHHHHHHHTT------CCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETT
T ss_pred HHHHHHHHHHcC------CCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeeccc
Confidence 999999999864 78999999 5788999999999999999999999999999 999999999888776 44
Q ss_pred CCCcccccccccchhhHHhhhcccCCC-C-CCeEEecCC
Q psy6094 278 KDNIATLKPEWISLANAKQRRGRAGRT-L-KRSETQQYP 314 (455)
Q Consensus 278 ~~~~~~l~~~~iSka~~~QR~GRaGR~-~-~G~c~~L~t 314 (455)
..++......|.|.++|.||+||+||. + +|.||.+|+
T Consensus 259 ~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 259 GRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp TTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ccceeeccccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 456666677899999999999999997 3 599999984
No 20
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.94 E-value=1.7e-27 Score=253.69 Aligned_cols=112 Identities=18% Similarity=0.199 Sum_probs=99.4
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeE
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVY 263 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~ 263 (455)
..++++||||+++..++.+++.|.... ..++.+..+||++++.+|..+++.|++|..+|||||+++++|||+|+|++
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~---~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~ 413 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEF---KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHE 413 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHH---TTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhc---cCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCE
Confidence 567899999999999999999998752 11478999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 264 VVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 264 VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
||+++. |.|..+|.||+|||||.+. |.|+.+++..
T Consensus 414 VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~ 449 (563)
T 3i5x_A 414 VLQIGV------------------PSELANYIHRIGRTARSGKEGSSVLFICKD 449 (563)
T ss_dssp EEEESC------------------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGG
T ss_pred EEEECC------------------CCchhhhhhhcCccccCCCCceEEEEEchh
Confidence 999554 3466789999999999985 9999999954
No 21
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.94 E-value=1.1e-27 Score=256.28 Aligned_cols=112 Identities=18% Similarity=0.199 Sum_probs=99.3
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeE
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVY 263 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~ 263 (455)
..++.+||||+++..++.+++.|.... ..++.+..+||++++.+|.++++.|+.|..+|||||+++++|||+|+|++
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~---~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~ 362 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEF---KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHE 362 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHH---TTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhh---cCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCE
Confidence 557789999999999999999998752 11377999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 264 VVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 264 VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
||+++. |.|..+|.||+|||||.+. |.|+.+++.+
T Consensus 363 VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~ 398 (579)
T 3sqw_A 363 VLQIGV------------------PSELANYIHRIGRTARSGKEGSSVLFICKD 398 (579)
T ss_dssp EEEESC------------------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGG
T ss_pred EEEcCC------------------CCCHHHhhhhccccccCCCCceEEEEEccc
Confidence 999554 3466789999999999986 9999999954
No 22
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.94 E-value=7.3e-28 Score=243.76 Aligned_cols=257 Identities=14% Similarity=0.174 Sum_probs=76.7
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh---------------------
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL--------------------- 94 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~--------------------- 94 (455)
|++...++...+.+...+.-..+++|.++++.+.+++++++.++||||||.+.. .++.
T Consensus 23 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~ 102 (394)
T 1fuu_A 23 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELA 102 (394)
T ss_dssp SGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHH
T ss_pred hhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHH
Confidence 445667888888888888888999999999999999999999999999996532 2221
Q ss_pred --------hh----cCC-----------------------CCChHHHHHhc-c-CCCCcCcc------hHHHH-----HH
Q psy6094 95 --------KR----SET-----------------------QQYPNDVLNML-K-DPELEGVN------NDVIF-----SL 126 (455)
Q Consensus 95 --------e~----~~~-----------------------vg~p~~ll~~l-~-d~~L~~~~------~D~ll-----~~ 126 (455)
.. +.. +++|..+++.+ . ...+..++ +|.++ ..
T Consensus 103 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~ 182 (394)
T 1fuu_A 103 LQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQ 182 (394)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHH
Confidence 00 000 11233355544 2 22233444 44433 23
Q ss_pred HHHHHHhcCCCCeEEEEccCCCCC----------ccceEEeehh------hhhhhhccCCCC-ChHHHHHHHHccCCCCE
Q psy6094 127 LQHICTTQRPGAILVYCTYTFMGV----------SPMKVFFCKN------VLQRLMKGVGAN-SPKRWVKLLRSMLVVPI 189 (455)
Q Consensus 127 lk~il~~~~~~~k~ilmSAT~~g~----------~pv~~~~l~~------~~~~~~~~~~~~-~~~~l~~~i~~~~~g~i 189 (455)
+..++...+++.++++||||++.. .|+......+ +.+.+....... ....+...+.....+++
T Consensus 183 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 262 (394)
T 1fuu_A 183 IYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQA 262 (394)
T ss_dssp HHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-------------------------------------
T ss_pred HHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcE
Confidence 455554667889999999999421 1222111111 111111111111 11123333433567899
Q ss_pred EEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCC
Q psy6094 190 LVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGK 269 (455)
Q Consensus 190 LVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~ 269 (455)
||||++.++++.+++.|...+ +.+..+||++++++|..+++.|++|..+|+|||+++++|+|+|++++||+++.
T Consensus 263 lVf~~~~~~~~~l~~~L~~~~------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~ 336 (394)
T 1fuu_A 263 VIFCNTRRKVEELTTKLRNDK------FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDL 336 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEECCHHHHHHHHHHHHHcC------CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCC
Confidence 999999999999999998763 78999999999999999999999999999999999999999999999998553
Q ss_pred CcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChhh
Q psy6094 270 TKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPNDV 317 (455)
Q Consensus 270 ~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~~ 317 (455)
|.|.+++.||+||+||.+. |.||.++++++
T Consensus 337 ------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 367 (394)
T 1fuu_A 337 ------------------PANKENYIHRIGRGGRFGRKGVAINFVTNED 367 (394)
T ss_dssp -------------------------------------------------
T ss_pred ------------------CCCHHHHHHHcCcccCCCCCceEEEEEchhH
Confidence 4567788999999999865 99999999654
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2e-27 Score=269.90 Aligned_cols=252 Identities=17% Similarity=0.169 Sum_probs=170.0
Q ss_pred ccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh--------------------------hhcCCCC-----
Q psy6094 54 KKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL--------------------------KRSETQQ----- 101 (455)
Q Consensus 54 ~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~--------------------------e~~~~vg----- 101 (455)
...+.+++|.++++++.++++++|+|+||||||+++. .++. +....+|
T Consensus 181 ~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd 260 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGD 260 (1108)
T ss_dssp CSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSS
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCc
Confidence 3456789999999999999999999999999997654 3322 1111111
Q ss_pred ------------ChHHHHHhc-cCC-CCcCcc------hHHHH-----HHHHHHHHhcCCCCeEEEEccCCC--------
Q psy6094 102 ------------YPNDVLNML-KDP-ELEGVN------NDVIF-----SLLQHICTTQRPGAILVYCTYTFM-------- 148 (455)
Q Consensus 102 ------------~p~~ll~~l-~d~-~L~~~~------~D~ll-----~~lk~il~~~~~~~k~ilmSAT~~-------- 148 (455)
+|.+|++++ .+. .+..++ +|.+. ..+..++...+++.|+|+||||++
T Consensus 261 ~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~ 340 (1108)
T 3l9o_A 261 ITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEW 340 (1108)
T ss_dssp CBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHH
T ss_pred cccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHH
Confidence 466677766 333 244444 33332 224555546788999999999982
Q ss_pred ---------------CC-ccceEEeehhhh------------------hhhhccCCC-----------------------
Q psy6094 149 ---------------GV-SPMKVFFCKNVL------------------QRLMKGVGA----------------------- 171 (455)
Q Consensus 149 ---------------g~-~pv~~~~l~~~~------------------~~~~~~~~~----------------------- 171 (455)
.+ .|+..++..... ...+.....
T Consensus 341 l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (1108)
T 3l9o_A 341 ICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGS 420 (1108)
T ss_dssp HHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-------------------------
T ss_pred HHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccccccccccccccccccccc
Confidence 22 344333321100 000000000
Q ss_pred C---ChHH---HHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCC------------------------------
Q psy6094 172 N---SPKR---WVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSS------------------------------ 215 (455)
Q Consensus 172 ~---~~~~---l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~------------------------------ 215 (455)
. .... ++..+.....+++|||++++.+++.++..|...+.....
T Consensus 421 ~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~ 500 (1108)
T 3l9o_A 421 AKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHIL 500 (1108)
T ss_dssp ----CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHT
T ss_pred ccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHH
Confidence 0 0111 333333356779999999999999999988652110000
Q ss_pred ---CeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchh
Q psy6094 216 ---RFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLA 292 (455)
Q Consensus 216 ---~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka 292 (455)
...+..+||+|++.+|..+++.|++|..+|||||+++++|||||++++||++..+ ||.. ...|+|.+
T Consensus 501 ~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~----~d~~------~~r~iS~~ 570 (1108)
T 3l9o_A 501 PLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRK----WDGQ------QFRWVSGG 570 (1108)
T ss_dssp HHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEE----ESSS------CEEECCHH
T ss_pred HhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcc----cCcc------ccccCCHH
Confidence 0118899999999999999999999999999999999999999999999985542 4332 23589999
Q ss_pred hHHhhhcccCCCC---CCeEEecCCh
Q psy6094 293 NAKQRRGRAGRTL---KRSETQQYPN 315 (455)
Q Consensus 293 ~~~QR~GRaGR~~---~G~c~~L~t~ 315 (455)
+|.||+|||||.+ .|.||.++++
T Consensus 571 eyiQr~GRAGR~G~d~~G~~ill~~~ 596 (1108)
T 3l9o_A 571 EYIQMSGRAGRRGLDDRGIVIMMIDE 596 (1108)
T ss_dssp HHHHHHHHSCCSSSCSSEEEEEEECC
T ss_pred HHHHhhcccCCCCCCCceEEEEEecC
Confidence 9999999999988 6999999984
No 24
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=4.4e-26 Score=225.55 Aligned_cols=242 Identities=17% Similarity=0.190 Sum_probs=171.1
Q ss_pred CHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh-----------------------hhc-
Q psy6094 43 SRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL-----------------------KRS- 97 (455)
Q Consensus 43 ~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~-----------------------e~~- 97 (455)
++...+.++..+.-..+++|.++++.+.+++++++.++||||||.++. .++. +.+
T Consensus 2 ~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~ 81 (337)
T 2z0m_A 2 NEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIGR 81 (337)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHhh
Confidence 456677788888888999999999999999999999999999996544 3332 000
Q ss_pred ---CC-----------------------CCChHHHHHhc-c-CCCCcCcc------hHHHH-----HHHHHHHHhcCCCC
Q psy6094 98 ---ET-----------------------QQYPNDVLNML-K-DPELEGVN------NDVIF-----SLLQHICTTQRPGA 138 (455)
Q Consensus 98 ---~~-----------------------vg~p~~ll~~l-~-d~~L~~~~------~D~ll-----~~lk~il~~~~~~~ 138 (455)
.. +++|..+++.+ . ...+..++ +|.+. ..++.++...+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~ 161 (337)
T 2z0m_A 82 YMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRK 161 (337)
T ss_dssp TSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCS
T ss_pred hcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCccc
Confidence 11 11344455555 2 22344444 44443 33555564566788
Q ss_pred eEEEEccCCCCC-cc---------ceEE-e--ehhhhhhhhccCCCCChHHHHHHHHccCCCCEEEEcCCHHHHHHHHHH
Q psy6094 139 ILVYCTYTFMGV-SP---------MKVF-F--CKNVLQRLMKGVGANSPKRWVKLLRSMLVVPILVFLPGWDTINSLHRS 205 (455)
Q Consensus 139 k~ilmSAT~~g~-~p---------v~~~-~--l~~~~~~~~~~~~~~~~~~l~~~i~~~~~g~iLVFlp~~~ei~~l~~~ 205 (455)
++++||||++.. .. .... . .......+.. ...........+....++++|||+++.++++.+++.
T Consensus 162 ~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~ 239 (337)
T 2z0m_A 162 ITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVH--VKDDWRSKVQALRENKDKGVIVFVRTRNRVAKLVRL 239 (337)
T ss_dssp EEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEE--CSSSSHHHHHHHHTCCCSSEEEECSCHHHHHHHHTT
T ss_pred EEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEE--eChHHHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHH
Confidence 999999999321 00 0000 0 0000001111 111122234555557788999999999999998877
Q ss_pred HHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCccccc
Q psy6094 206 MCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLK 285 (455)
Q Consensus 206 L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~ 285 (455)
|. .+..+||+++..+|.++++.|++|..+|||||+++++|+|+|++++||+++.
T Consensus 240 l~----------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~---------------- 293 (337)
T 2z0m_A 240 FD----------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDA---------------- 293 (337)
T ss_dssp CT----------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSC----------------
T ss_pred hh----------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecC----------------
Confidence 65 2678999999999999999999999999999999999999999999999553
Q ss_pred ccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 286 PEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 286 ~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
|.|.+++.||+|||||.+. |.|+.+++
T Consensus 294 --~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 294 --PQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp --CSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred --CCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 3467889999999999865 99999988
No 25
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.94 E-value=1.3e-26 Score=250.97 Aligned_cols=228 Identities=18% Similarity=0.194 Sum_probs=160.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh-hhhh---hh----------------------cC----------CCCChHH-------
Q psy6094 69 VRNNQITVISGETGSGPPLHLD-FITL---KR----------------------SE----------TQQYPND------- 105 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp-~ll~---e~----------------------~~----------~vg~p~~------- 105 (455)
+.++++++++|+||||||+++. .++. .. +. .+++|.+
T Consensus 238 l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~i~~~~~~l~~v~tp~~ll~~l~~ 317 (673)
T 2wv9_A 238 LKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLPVRYLTPAVQREHSGNEIVDVMCH 317 (673)
T ss_dssp GSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCCEECCC---CCCCSCCCEEEEEH
T ss_pred HhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCCeeeecccccccCCHHHHHHHHHh
Confidence 3489999999999999998743 3332 00 00 0222322
Q ss_pred --HHHhc-cCCCCcCcc-------------hHHHHHHHHHHHHhcCCCCeEEEEccCCCCC-c--cceEEeehhhhhhhh
Q psy6094 106 --VLNML-KDPELEGVN-------------NDVIFSLLQHICTTQRPGAILVYCTYTFMGV-S--PMKVFFCKNVLQRLM 166 (455)
Q Consensus 106 --ll~~l-~d~~L~~~~-------------~D~ll~~lk~il~~~~~~~k~ilmSAT~~g~-~--pv~~~~l~~~~~~~~ 166 (455)
+.+.+ .+..+.+++ .+..+..++.++ .+++.++++||||++.. . +....-...+...+
T Consensus 318 ~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~--~~~~~~vl~~SAT~~~~i~~~~~~~~~i~~v~~~~- 394 (673)
T 2wv9_A 318 ATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRV--EAGEAAAIFMTATPPGTSDPFPDTNSPVHDVSSEI- 394 (673)
T ss_dssp HHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHH--HTTSCEEEEECSSCTTCCCSSCCCSSCEEEEECCC-
T ss_pred hhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhc--cccCCcEEEEcCCCChhhhhhcccCCceEEEeeec-
Confidence 44444 444555555 334556666655 23689999999999544 1 11100000000000
Q ss_pred ccCCCCChHHHHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEE
Q psy6094 167 KGVGANSPKRWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIV 246 (455)
Q Consensus 167 ~~~~~~~~~~l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVi 246 (455)
..... ..+...+. ..++++|||||++++++.+++.|+..+ +.+..+|| ++|.++++.|++|..+||
T Consensus 395 --~~~~~-~~~l~~l~-~~~~~~lVF~~s~~~~e~la~~L~~~g------~~v~~lHg----~eR~~v~~~F~~g~~~VL 460 (673)
T 2wv9_A 395 --PDRAW-SSGFEWIT-DYAGKTVWFVASVKMSNEIAQCLQRAG------KRVIQLNR----KSYDTEYPKCKNGDWDFV 460 (673)
T ss_dssp --CSSCC-SSCCHHHH-SCCSCEEEECSSHHHHHHHHHHHHTTT------CCEEEECS----SSHHHHGGGGGTCCCSEE
T ss_pred --CHHHH-HHHHHHHH-hCCCCEEEEECCHHHHHHHHHHHHhCC------CeEEEeCh----HHHHHHHHHHHCCCceEE
Confidence 00000 11223333 468899999999999999999999863 78999999 488899999999999999
Q ss_pred EeCCCCccCCCCCCeeEEEeCCCCccc--ccccCCCcccccccccchhhHHhhhcccCCC-C-CCeEEecCC
Q psy6094 247 LATNIAETSITIDDIVYVVDCGKTKMS--NFDVKDNIATLKPEWISLANAKQRRGRAGRT-L-KRSETQQYP 314 (455)
Q Consensus 247 vaTniae~gitI~~V~~VID~g~~k~~--~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~-~-~G~c~~L~t 314 (455)
||||++|+||||| +++|||+|....+ .||...++..+...|.|.++|.||+|||||. + +|.||.+|.
T Consensus 461 VaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 461 ITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp EECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred EECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 9999999999999 9999999976654 3676667777778999999999999999998 3 599999985
No 26
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.93 E-value=9.4e-27 Score=251.54 Aligned_cols=165 Identities=14% Similarity=0.085 Sum_probs=122.9
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCC--CceEEEEeCCCCccCCCCCCee
Q psy6094 185 LVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPE--GVRKIVLATNIAETSITIDDIV 262 (455)
Q Consensus 185 ~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~--g~~kVivaTniae~gitI~~V~ 262 (455)
.+|+ +||++++++++.+++.|...+ +.+.++||+|++++|.++++.|.+ |.++||||||++|+|||| +|+
T Consensus 320 ~~g~-iIf~~s~~~ie~la~~L~~~g------~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~ 391 (677)
T 3rc3_A 320 RPGD-CIVCFSKNDIYSVSRQIEIRG------LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIR 391 (677)
T ss_dssp CTTE-EEECSSHHHHHHHHHHHHHTT------CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBS
T ss_pred CCCC-EEEEcCHHHHHHHHHHHHhcC------CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-Ccc
Confidence 3444 677888999999999999863 789999999999999988888877 899999999999999999 999
Q ss_pred EEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCC----CCeEEecCChh-----hhccCCCCcccccC-hH
Q psy6094 263 YVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTL----KRSETQQYPND-----VLNMLKDPELEGVN-ND 332 (455)
Q Consensus 263 ~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~----~G~c~~L~t~~-----~~~~~~~PEi~r~~-~~ 332 (455)
+|||+|..|. .||+..+. ...|+|.++|.||+|||||.+ +|.||.+++++ .+.....|+|.+.+ ..
T Consensus 392 ~VI~~~~~k~-~~~~~G~~---~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~l~p 467 (677)
T 3rc3_A 392 RIIFYSLIKP-SINEKGER---ELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHP 467 (677)
T ss_dssp EEEESCSBC---------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHHSCCCCCCCEEECC
T ss_pred EEEECCcccc-ccccCCcc---ccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHhcCcchhhhccCCC
Confidence 9999999988 88877443 257999999999999999988 48999999854 35567889999866 33
Q ss_pred HHH--HHHhhhcCCCChhhHHhHHhhhhhccccc
Q psy6094 333 VIF--SLLQHICTTQRPGAILVFLPGWDTINSLH 364 (455)
Q Consensus 333 ~~L--~~l~~~~~~P~~~~i~~al~~L~~lgald 364 (455)
..+ ..+...+ +...+...++.+..++.++
T Consensus 468 ~~~~l~~~~~~l---~~~~l~ell~~l~~~~~vd 498 (677)
T 3rc3_A 468 TAEQIEMFAYHL---PDATLSNLIDIFVDFSQVD 498 (677)
T ss_dssp CHHHHHHHHHHS---TTSCHHHHHHHHHHHCBCC
T ss_pred hHHHHHHHhccC---CcchHHHHHHHHHHhhccc
Confidence 333 3333222 2234455555566565555
No 27
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.93 E-value=2e-26 Score=243.65 Aligned_cols=249 Identities=13% Similarity=0.109 Sum_probs=166.1
Q ss_pred CHHHHHHHHH-HccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCccc--chhhhh-h---------------------hhc
Q psy6094 43 SRRYQEMLEA-RKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPL--HLDFIT-L---------------------KRS 97 (455)
Q Consensus 43 ~~~~~~~l~~-R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTt--qlp~ll-~---------------------e~~ 97 (455)
++...+.++. -+.-...++|.++++++.+++++++.++||||||. ++|.+. . +.|
T Consensus 10 ~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~~~~l~~~g 89 (523)
T 1oyw_A 10 ESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANG 89 (523)
T ss_dssp HHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHHHHHHHHcC
Confidence 3444445544 34455678899999999999999999999999995 566221 1 111
Q ss_pred CCCC----------------------------ChHHHH-----Hhc---------cCC--CCcCcchHH--HHHHHHHHH
Q psy6094 98 ETQQ----------------------------YPNDVL-----NML---------KDP--ELEGVNNDV--IFSLLQHIC 131 (455)
Q Consensus 98 ~~vg----------------------------~p~~ll-----~~l---------~d~--~L~~~~~D~--ll~~lk~il 131 (455)
..++ +|.+|+ +.+ -|. .+...+.|+ ....+..+.
T Consensus 90 i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~ 169 (523)
T 1oyw_A 90 VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLR 169 (523)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHH
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHH
Confidence 1111 122221 111 000 000001111 112233344
Q ss_pred HhcCCCCeEEEEccCCCCC-c---------cceEEeehhh---hhhhhccCCCCChHHHHHHHHccCCCCEEEEcCCHHH
Q psy6094 132 TTQRPGAILVYCTYTFMGV-S---------PMKVFFCKNV---LQRLMKGVGANSPKRWVKLLRSMLVVPILVFLPGWDT 198 (455)
Q Consensus 132 ~~~~~~~k~ilmSAT~~g~-~---------pv~~~~l~~~---~~~~~~~~~~~~~~~l~~~i~~~~~g~iLVFlp~~~e 198 (455)
...++.++++||||++.. . .-...+.... .-.+...........+..++....++++||||+++++
T Consensus 170 -~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~ 248 (523)
T 1oyw_A 170 -QRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAK 248 (523)
T ss_dssp -HHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHH
T ss_pred -HhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHH
Confidence 445789999999999221 0 0000010000 0000001111223346666665667899999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccC
Q psy6094 199 INSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVK 278 (455)
Q Consensus 199 i~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~ 278 (455)
++.+++.|...+ +.+..+||++++++|..+++.|.+|..+|||||+++++|||+|+|++||+++.
T Consensus 249 ~e~l~~~L~~~g------~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~--------- 313 (523)
T 1oyw_A 249 VEDTAARLQSKG------ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI--------- 313 (523)
T ss_dssp HHHHHHHHHHTT------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSC---------
T ss_pred HHHHHHHHHHCC------CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECC---------
Confidence 999999999874 77999999999999999999999999999999999999999999999999554
Q ss_pred CCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 279 DNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 279 ~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
|.|.++|.||+|||||.+. |.|+.+|+.+
T Consensus 314 ---------p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~ 343 (523)
T 1oyw_A 314 ---------PRNIESYYQETGRAGRDGLPAEAMLFYDPA 343 (523)
T ss_dssp ---------CSSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred ---------CCCHHHHHHHhccccCCCCCceEEEEeCHH
Confidence 3577889999999999885 9999999954
No 28
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.93 E-value=7.2e-26 Score=242.34 Aligned_cols=116 Identities=18% Similarity=0.161 Sum_probs=102.8
Q ss_pred HHHHHHc-cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccC
Q psy6094 177 WVKLLRS-MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETS 255 (455)
Q Consensus 177 l~~~i~~-~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~g 255 (455)
+..++.. ..++++||||+++++++.+++.|...+ +.+.++||+|++++|.++++.|..|..+|||||+++++|
T Consensus 257 l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g------~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~G 330 (591)
T 2v1x_A 257 IVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLG------IHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMG 330 (591)
T ss_dssp HHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTT------CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTT
T ss_pred HHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCC------CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcC
Confidence 4444543 367889999999999999999999864 789999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 256 ITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 256 itI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
||+|+|++||+++.+ -|.++|.||+|||||.|. |.|+.+|+..
T Consensus 331 ID~p~V~~VI~~~~p------------------~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~ 374 (591)
T 2v1x_A 331 IDKPDVRFVIHHSMS------------------KSMENYYQESGRAGRDDMKADCILYYGFG 374 (591)
T ss_dssp CCCSCEEEEEESSCC------------------SSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred CCcccccEEEEeCCC------------------CCHHHHHHHhccCCcCCCCceEEEEEChH
Confidence 999999999996654 367889999999999875 9999999954
No 29
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.93 E-value=6.8e-26 Score=234.06 Aligned_cols=170 Identities=18% Similarity=0.158 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEccCCCCC--------ccceEEeehhhhhhhhccCCCCChHHHHHHHHccCCCCEEEE
Q psy6094 121 DVIFSLLQHICTTQRPGAILVYCTYTFMGV--------SPMKVFFCKNVLQRLMKGVGANSPKRWVKLLRSMLVVPILVF 192 (455)
Q Consensus 121 D~ll~~lk~il~~~~~~~k~ilmSAT~~g~--------~pv~~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~~g~iLVF 192 (455)
+.....++.+. .+++.++++||||++.. .|+... +. . .. ......+...+. ..+|++|||
T Consensus 110 ~~~~~~l~~~~--~~~~~~~l~~SAT~~~~~~~~~~~~~~i~~~--~~---~-~~---~~~~~~~~~~l~-~~~~~~lVF 177 (431)
T 2v6i_A 110 VAARGYIETRV--SMGDAGAIFMTATPPGTTEAFPPSNSPIIDE--ET---R-IP---DKAWNSGYEWIT-EFDGRTVWF 177 (431)
T ss_dssp HHHHHHHHHHH--HTTSCEEEEEESSCTTCCCSSCCCSSCCEEE--EC---C-CC---SSCCSSCCHHHH-SCSSCEEEE
T ss_pred HHHHHHHHHHh--hCCCCcEEEEeCCCCcchhhhcCCCCceeec--cc---c-CC---HHHHHHHHHHHH-cCCCCEEEE
Confidence 44555566554 35789999999999543 222111 00 0 00 000011223444 457899999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcc
Q psy6094 193 LPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKM 272 (455)
Q Consensus 193 lp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~ 272 (455)
||++++++.+++.|+..+ +.+..+||+ +|.++++.|++|..+|||||+++|+||||| +.+|||+|.++.
T Consensus 178 ~~~~~~~~~l~~~L~~~~------~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~ 246 (431)
T 2v6i_A 178 VHSIKQGAEIGTCLQKAG------KKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIK 246 (431)
T ss_dssp CSSHHHHHHHHHHHHHTT------CCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEE
T ss_pred eCCHHHHHHHHHHHHHcC------CeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCcccc
Confidence 999999999999999863 779999997 677899999999999999999999999999 999999999999
Q ss_pred cccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 273 SNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 273 ~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
+.|| ..++......|.|.+++.||+||+||.++ +.|+.+|.
T Consensus 247 ~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 247 PILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred ceec-ccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 9998 67777788899999999999999999874 44555554
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.92 E-value=3.6e-27 Score=248.62 Aligned_cols=260 Identities=14% Similarity=0.187 Sum_probs=146.3
Q ss_pred HHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcC--CeEEEEcCCCCCcccchh-hhhh--------------------
Q psy6094 38 IRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNN--QITVISGETGSGPPLHLD-FITL-------------------- 94 (455)
Q Consensus 38 ~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~--~~vii~~~TGSGKTtqlp-~ll~-------------------- 94 (455)
.....++...+.+..++....+++|.++++++.++ +++++.|+||||||.+.. .++.
T Consensus 122 ~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L 201 (508)
T 3fho_A 122 XXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSREL 201 (508)
T ss_dssp -----------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHH
T ss_pred cccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHH
Confidence 34445566666676767666788899999999987 999999999999996533 2221
Q ss_pred ---------hhcC------------------------CCCChHHHHHhc-c-CCCCcCcc------hHHHH------HHH
Q psy6094 95 ---------KRSE------------------------TQQYPNDVLNML-K-DPELEGVN------NDVIF------SLL 127 (455)
Q Consensus 95 ---------e~~~------------------------~vg~p~~ll~~l-~-d~~L~~~~------~D~ll------~~l 127 (455)
+.+. .+++|..+++.+ . ...+..++ .+.+. ..+
T Consensus 202 ~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~ 281 (508)
T 3fho_A 202 ARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQS 281 (508)
T ss_dssp HHHHHHHHHHHSTTSSCCEEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHH
T ss_pred HHHHHHHHHHhCCccCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHH
Confidence 0000 011344455554 2 22234444 23221 234
Q ss_pred HHHHHhcCCCCeEEEEccCCCCC-ccceEEe--------eh-------hhhhhhhccCCCC-ChHHHHHHHHccCCCCEE
Q psy6094 128 QHICTTQRPGAILVYCTYTFMGV-SPMKVFF--------CK-------NVLQRLMKGVGAN-SPKRWVKLLRSMLVVPIL 190 (455)
Q Consensus 128 k~il~~~~~~~k~ilmSAT~~g~-~pv~~~~--------l~-------~~~~~~~~~~~~~-~~~~l~~~i~~~~~g~iL 190 (455)
..+....+++.++|+||||++.. ......+ +. .+...+....... ....+...+....++++|
T Consensus 282 ~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~L 361 (508)
T 3fho_A 282 MRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSI 361 (508)
T ss_dssp HHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEE
T ss_pred HHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEE
Confidence 44554567789999999999431 1000000 00 0000000000000 111233444445678999
Q ss_pred EEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCC
Q psy6094 191 VFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKT 270 (455)
Q Consensus 191 VFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~ 270 (455)
|||+++..++.+++.|...+ +.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||+.+.+
T Consensus 362 VF~~s~~~a~~l~~~L~~~~------~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p 435 (508)
T 3fho_A 362 IFCKKKDTAEEIARRMTADG------HTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMP 435 (508)
T ss_dssp EBCSSTTTTTHHHHHHTTTT------CCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----
T ss_pred EEECCHHHHHHHHHHHHhCC------CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCC
Confidence 99999999999999998753 678899999999999999999999999999999999999999999999986654
Q ss_pred cccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCCh
Q psy6094 271 KMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPN 315 (455)
Q Consensus 271 k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~ 315 (455)
.... .+.|..++.||+|||||.+. |.|+.+++.
T Consensus 436 ~~~~------------~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~ 469 (508)
T 3fho_A 436 LDQA------------GRPDPQTYLHRIGRTGRFGRVGVSINFVHD 469 (508)
T ss_dssp CC-----------------CTHHHHHTTSCCC-----CEEEEEECT
T ss_pred Cccc------------CCCCHHHHHHHhhhcCCCCCCcEEEEEEeC
Confidence 3221 12567889999999999885 999999983
No 31
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.92 E-value=3.4e-25 Score=249.55 Aligned_cols=128 Identities=20% Similarity=0.148 Sum_probs=103.4
Q ss_pred HHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCC---------------------------------CCeEEEeec
Q psy6094 177 WVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNS---------------------------------SRFQIIPLH 223 (455)
Q Consensus 177 l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~---------------------------------~~~~v~~lh 223 (455)
+..++.....+++|||++++++++.++..|...+.... -...+.++|
T Consensus 327 li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H 406 (997)
T 4a4z_A 327 IVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHH 406 (997)
T ss_dssp HHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeec
Confidence 45555556778999999999999999999876431000 011478999
Q ss_pred CCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCC
Q psy6094 224 SMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303 (455)
Q Consensus 224 s~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR 303 (455)
|+|++.+|..+++.|..|..+|||||+++++|||+|+ +.||..+.++ ||.. ...|+|.++|.||+|||||
T Consensus 407 ~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k---~dg~------~~~~~s~~~y~Qr~GRAGR 476 (997)
T 4a4z_A 407 GGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRK---HDGN------GLRELTPGEFTQMAGRAGR 476 (997)
T ss_dssp TTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEE---EETT------EEEECCHHHHHHHHGGGCC
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEecccc---ccCc------cCCCCCHHHHhHHhccccc
Confidence 9999999999999999999999999999999999999 6666666654 4432 2358999999999999999
Q ss_pred CC---CCeEEecCC
Q psy6094 304 TL---KRSETQQYP 314 (455)
Q Consensus 304 ~~---~G~c~~L~t 314 (455)
.| .|.||.++.
T Consensus 477 ~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 477 RGLDSTGTVIVMAY 490 (997)
T ss_dssp TTTCSSEEEEEECC
T ss_pred CCCCcceEEEEecC
Confidence 87 599999995
No 32
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=5.1e-25 Score=206.01 Aligned_cols=160 Identities=15% Similarity=0.152 Sum_probs=130.0
Q ss_pred hHHHHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCc
Q psy6094 174 PKRWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAE 253 (455)
Q Consensus 174 ~~~l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae 253 (455)
...+...+....++++||||+++.+++.+++.|...+ +.+.++||++++.+|.++++.|++|..+|+||||+++
T Consensus 19 ~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~------~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 92 (212)
T 3eaq_A 19 LEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG------HPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA 92 (212)
T ss_dssp HHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHT------CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTT
T ss_pred HHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhh
Confidence 3345556665678999999999999999999999864 7899999999999999999999999999999999999
Q ss_pred cCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCC-CCeEEecCChhh--------------h
Q psy6094 254 TSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTL-KRSETQQYPNDV--------------L 318 (455)
Q Consensus 254 ~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~-~G~c~~L~t~~~--------------~ 318 (455)
+|+|||++++|||+|. |.|.++|.||+|||||.| +|.||.+|+..+ +
T Consensus 93 ~Gidi~~v~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~ 154 (212)
T 3eaq_A 93 RGLDIPQVDLVVHYRL------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 154 (212)
T ss_dssp CSSSCCCBSEEEESSC------------------CSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCC
T ss_pred cCCCCccCcEEEECCC------------------CcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcC
Confidence 9999999999999665 357789999999999997 499999999543 2
Q ss_pred c---cCCCCcccccC-hHHHHHH--------------HhhhcCCCChhhHHhHHhhh
Q psy6094 319 N---MLKDPELEGVN-NDVIFSL--------------LQHICTTQRPGAILVFLPGW 357 (455)
Q Consensus 319 ~---~~~~PEi~r~~-~~~~L~~--------------l~~~~~~P~~~~i~~al~~L 357 (455)
. ....|||.+.. ..+++.+ +..++++|+++++..|+..|
T Consensus 155 ~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 155 KRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 2 22345666666 5555522 23567788888888887665
No 33
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.91 E-value=4.1e-25 Score=240.92 Aligned_cols=130 Identities=18% Similarity=0.135 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEee--------cCCCChhhHhhhhcCCCC-CceEEEEeCCCCccC
Q psy6094 185 LVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPL--------HSMLPTVSQKSIFNTPPE-GVRKIVLATNIAETS 255 (455)
Q Consensus 185 ~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~l--------hs~l~~~~r~~v~~~~~~-g~~kVivaTniae~g 255 (455)
.++++|||++++.+++.+++.|...+.+ ..+.+..+ ||+|++++|.++++.|++ |..+|||||+++++|
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~--~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~G 474 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKL--SFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 474 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTC--CSCCEEC-----------------------------CCSCSEEEESSCCC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCc--cccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcC
Confidence 5789999999999999999999987532 12566667 669999999999999998 999999999999999
Q ss_pred CCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCChhh-------------hccCC
Q psy6094 256 ITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPNDV-------------LNMLK 322 (455)
Q Consensus 256 itI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~~-------------~~~~~ 322 (455)
||||++++||+ ||++ .|..+|.||+|| ||.++|.||.|++... +....
T Consensus 475 iDip~v~~VI~--------~d~p----------~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~ 535 (696)
T 2ykg_A 475 IDIAQCNLVIL--------YEYV----------GNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDS 535 (696)
T ss_dssp ---CCCSEEEE--------ESCC------------CCCC----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCccCCEEEE--------eCCC----------CCHHHHHHhhcc-CcCCCceEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999 5543 344566799999 9998899999999432 23445
Q ss_pred CCcccccC-hHHHH
Q psy6094 323 DPELEGVN-NDVIF 335 (455)
Q Consensus 323 ~PEi~r~~-~~~~L 335 (455)
.||+.+.+ +.++.
T Consensus 536 ~~~~~~~~~~~~~~ 549 (696)
T 2ykg_A 536 ILRLQTWDEAVFRE 549 (696)
T ss_dssp HHHHTTSCHHHHHH
T ss_pred HHHhhccCHHHHHH
Confidence 67777777 66644
No 34
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3e-24 Score=241.89 Aligned_cols=129 Identities=22% Similarity=0.210 Sum_probs=103.6
Q ss_pred HHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCC---------------------------------CeEEEeec
Q psy6094 177 WVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSS---------------------------------RFQIIPLH 223 (455)
Q Consensus 177 l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~---------------------------------~~~v~~lh 223 (455)
+...+.....+++|||++++.+++.+++.|...+..... ...+..+|
T Consensus 334 l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~H 413 (1010)
T 2xgj_A 334 IVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHH 413 (1010)
T ss_dssp HHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEES
T ss_pred HHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEEC
Confidence 334444355679999999999999999988763211000 01278899
Q ss_pred CCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCC
Q psy6094 224 SMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303 (455)
Q Consensus 224 s~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR 303 (455)
|+|++.+|..+++.|++|..+|||||+++++|||+|++++||+. ...||... ..|.|.++|.||+|||||
T Consensus 414 ggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~~------~rp~s~~~y~Qr~GRAGR 483 (1010)
T 2xgj_A 414 SGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQQ------FRWVSGGEYIQMSGRAGR 483 (1010)
T ss_dssp TTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSSC------EEECCHHHHHHHHTTBCC
T ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccCCcC------CccCCHHHHhHhhhhccc
Confidence 99999999999999999999999999999999999999999983 22355332 358899999999999999
Q ss_pred CCC---CeEEecCCh
Q psy6094 304 TLK---RSETQQYPN 315 (455)
Q Consensus 304 ~~~---G~c~~L~t~ 315 (455)
.|. |.||.++++
T Consensus 484 ~G~d~~G~vi~l~~~ 498 (1010)
T 2xgj_A 484 RGLDDRGIVIMMIDE 498 (1010)
T ss_dssp TTTCSSEEEEEEECS
T ss_pred CCCCCceEEEEEECC
Confidence 884 999999983
No 35
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.91 E-value=1.3e-24 Score=222.70 Aligned_cols=237 Identities=15% Similarity=0.119 Sum_probs=157.2
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccch-hhhhh--------------------------hh--
Q psy6094 46 YQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHL-DFITL--------------------------KR-- 96 (455)
Q Consensus 46 ~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtql-p~ll~--------------------------e~-- 96 (455)
+.++++.......+++|.++++.+.++++++++|+||||||... +.++. ..
T Consensus 10 ~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 89 (414)
T 3oiy_A 10 FRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLAD 89 (414)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHcc
Confidence 44556555566778999999999999999999999999999531 11111 11
Q ss_pred -cCCCC----------------------------ChHHHHHhccCCCCcCcc------h----------HHHHH------
Q psy6094 97 -SETQQ----------------------------YPNDVLNMLKDPELEGVN------N----------DVIFS------ 125 (455)
Q Consensus 97 -~~~vg----------------------------~p~~ll~~l~d~~L~~~~------~----------D~ll~------ 125 (455)
+..++ +|.+|++.+....+..++ + |.++.
T Consensus 90 ~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~ 169 (414)
T 3oiy_A 90 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPE 169 (414)
T ss_dssp SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCH
T ss_pred CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcH
Confidence 11111 233343333111122333 2 55554
Q ss_pred H-HHHHHHhcC-----------CCCeEEEEccCC-CCC-cc-ceE-----------EeehhhhhhhhccCCCCChHHHHH
Q psy6094 126 L-LQHICTTQR-----------PGAILVYCTYTF-MGV-SP-MKV-----------FFCKNVLQRLMKGVGANSPKRWVK 179 (455)
Q Consensus 126 ~-lk~il~~~~-----------~~~k~ilmSAT~-~g~-~p-v~~-----------~~l~~~~~~~~~~~~~~~~~~l~~ 179 (455)
- ++.++...+ ++.++++||||+ +.. .. ... ...+.+.+.+.. ......+..
T Consensus 170 ~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~l~~ 246 (414)
T 3oiy_A 170 EIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRIS---SRSKEKLVE 246 (414)
T ss_dssp HHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSCCCCCCCSEEEEEES---SCCHHHHHH
T ss_pred HHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCccccccccchheeec---cCHHHHHHH
Confidence 1 445543333 789999999994 322 10 000 000000011111 123334555
Q ss_pred HHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEE-eecCCCChhhHhhhhcCCCCCceEEEEe----CCCCcc
Q psy6094 180 LLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQII-PLHSMLPTVSQKSIFNTPPEGVRKIVLA----TNIAET 254 (455)
Q Consensus 180 ~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~-~lhs~l~~~~r~~v~~~~~~g~~kViva----Tniae~ 254 (455)
.+.. .++++||||+++.+++.+++.|...+ +.+. .+||. +| + ++.|++|..+|+|| |+++++
T Consensus 247 ~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~------~~~~~~~h~~----~r-~-~~~f~~g~~~vLvat~s~T~~~~~ 313 (414)
T 3oiy_A 247 LLEI-FRDGILIFAQTEEEGKELYEYLKRFK------FNVGETWSEF----EK-N-FEDFKVGKINILIGVQAYYGKLTR 313 (414)
T ss_dssp HHHH-HCSSEEEEESSHHHHHHHHHHHHHTT------CCEEESSSCH----HH-H-HHHHHTTSCSEEEEECCTTCCCCC
T ss_pred HHHH-cCCCEEEEECCHHHHHHHHHHHHHcC------CceehhhcCc----ch-H-HHHHhCCCCeEEEEecCcCchhhc
Confidence 5553 56899999999999999999999864 6777 89985 33 3 88899999999999 999999
Q ss_pred CCCCCC-eeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCC-----CCeEEecCC
Q psy6094 255 SITIDD-IVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTL-----KRSETQQYP 314 (455)
Q Consensus 255 gitI~~-V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~-----~G~c~~L~t 314 (455)
|+|||+ |++||++|.++. .|..+|.||+|||||.+ .|.||.++.
T Consensus 314 GiDip~~v~~VI~~~~p~~----------------~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~ 363 (414)
T 3oiy_A 314 GVDLPERIKYVIFWGTPSG----------------PDVYTYIQASGRSSRILNGVLVKGVSVIFEE 363 (414)
T ss_dssp CCCCTTTCCEEEEESCCTT----------------TCHHHHHHHHGGGCCEETTEECCEEEEEECC
T ss_pred cCccccccCEEEEECCCCC----------------CCHHHHHHHhCccccCCCCCCcceEEEEEEc
Confidence 999999 999999665421 56788999999999975 699999995
No 36
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.91 E-value=2.4e-24 Score=252.92 Aligned_cols=199 Identities=13% Similarity=0.057 Sum_probs=138.6
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCC-------C-C-------------CC-------CeEEEeecCCCChhhHhhhh
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSF-------F-N-------------SS-------RFQIIPLHSMLPTVSQKSIF 235 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~-------~-~-------------~~-------~~~v~~lhs~l~~~~r~~v~ 235 (455)
...+++||||+++..++.++..|..... + . .+ ..-|..+||+|++++|..++
T Consensus 1153 ~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1153 SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHH
T ss_pred cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHH
Confidence 5678999999999999998877653210 0 0 00 12378899999999999999
Q ss_pred cCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCC---CCeEEec
Q psy6094 236 NTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTL---KRSETQQ 312 (455)
Q Consensus 236 ~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~---~G~c~~L 312 (455)
+.|++|..+|||||+++++||++|.+.+||.+. ..||...+ ...+.|..++.||+|||||.| .|.|+.+
T Consensus 1233 ~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~----~~~dg~~~----~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll 1304 (1724)
T 4f92_B 1233 QLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDT----QYYNGKIH----AYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1304 (1724)
T ss_dssp HHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECS----EEEETTTT----EEEECCHHHHHHHHTTBCCTTTCSCEEEEEE
T ss_pred HHHHCCCCeEEEEChHHHcCCCCCccEEEEecC----ccccCccc----ccCCCCHHHHHHhhccccCCCCCCceEEEEE
Confidence 999999999999999999999999999999643 34554432 235788999999999999987 4999999
Q ss_pred CChhh---hcc-CCCCcccccC-----hHHHH---------------HHHh------h------h--cCCCC--------
Q psy6094 313 YPNDV---LNM-LKDPELEGVN-----NDVIF---------------SLLQ------H------I--CTTQR-------- 346 (455)
Q Consensus 313 ~t~~~---~~~-~~~PEi~r~~-----~~~~L---------------~~l~------~------~--~~~P~-------- 346 (455)
.+... +.. ...|+-.++. .+.++ .++. . + +....
T Consensus 1305 ~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l 1384 (1724)
T 4f92_B 1305 CQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHL 1384 (1724)
T ss_dssp EEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHH
T ss_pred ecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccchhhHHHHH
Confidence 88322 111 1222222222 22222 2221 0 0 11111
Q ss_pred hhhHHhHHhhhhhcccccCCCCCCcccCChHHHHHhhCCCChhHH
Q psy6094 347 PGAILVFLPGWDTINSLHRSMCQSSFFNSCLLYEFAMVDNKPKEI 391 (455)
Q Consensus 347 ~~~i~~al~~L~~lgald~~~~l~~~~~T~lG~~l~~lp~~p~~~ 391 (455)
.+.++.+++.|.+.|+|+.+++- .+.+|++|+.++..+++|..+
T Consensus 1385 ~~lv~~~l~~L~~~~~I~~~~~~-~l~~T~lG~i~s~~yi~~~t~ 1428 (1724)
T 4f92_B 1385 SELVEQTLSDLEQSKCISIEDEM-DVAPLNLGMIAAYYYINYTTI 1428 (1724)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTT-EEEECHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEcCCC-CEeecHHHHHHHHHCCCHHHH
Confidence 24467889999999999643321 245699999999999999443
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.91 E-value=1.5e-24 Score=254.61 Aligned_cols=197 Identities=13% Similarity=0.072 Sum_probs=139.6
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcC----C---C---CC---------------------CCeEEEeecCCCChhhHh
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSS----F---F---NS---------------------SRFQIIPLHSMLPTVSQK 232 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~----~---~---~~---------------------~~~~v~~lhs~l~~~~r~ 232 (455)
..++++||||+++++++.+++.|.+.. . + .. -..-+..+||+|++++|.
T Consensus 315 ~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~ 394 (1724)
T 4f92_B 315 AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRT 394 (1724)
T ss_dssp CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHH
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHH
Confidence 456789999999999999998886421 0 0 00 012277889999999999
Q ss_pred hhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCC---CCeE
Q psy6094 233 SIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTL---KRSE 309 (455)
Q Consensus 233 ~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~---~G~c 309 (455)
.+.+.|++|..+|||||+.++.|||+|.+++||.. ...||+..|. ..++|.+++.||+|||||.| .|.+
T Consensus 395 ~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~~----~~~ls~~~~~Qm~GRAGR~g~d~~G~~ 466 (1724)
T 4f92_B 395 LVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKGR----WTELGALDILQMLGRAGRPQYDTKGEG 466 (1724)
T ss_dssp HHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTTE----EEECCHHHHHHHHTTBSCTTTCSCEEE
T ss_pred HHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeC----CEEecCcCCC----cccCCHHHHHHhhhhccCCCCCCccEE
Confidence 99999999999999999999999999999999963 2458877663 35789999999999999976 4999
Q ss_pred EecCChhhhc------cCCCC-cccccC--h-----HHHH----------HHHh------hhcCC--------------C
Q psy6094 310 TQQYPNDVLN------MLKDP-ELEGVN--N-----DVIF----------SLLQ------HICTT--------------Q 345 (455)
Q Consensus 310 ~~L~t~~~~~------~~~~P-Ei~r~~--~-----~~~L----------~~l~------~~~~~--------------P 345 (455)
|.+.+.++.. ....| |-...+ . ++++ .++. ..... |
T Consensus 467 ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~ 546 (1724)
T 4f92_B 467 ILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDP 546 (1724)
T ss_dssp EEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCT
T ss_pred EEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccch
Confidence 9887743321 11111 111111 1 1222 1211 01111 1
Q ss_pred C-----hhhHHhHHhhhhhcccccCCCCCCcccCChHHHHHhhCCCCh
Q psy6094 346 R-----PGAILVFLPGWDTINSLHRSMCQSSFFNSCLLYEFAMVDNKP 388 (455)
Q Consensus 346 ~-----~~~i~~al~~L~~lgald~~~~l~~~~~T~lG~~l~~lp~~p 388 (455)
. .+.+..++..|...|.+..+..-..+.+|++|+.++.+++++
T Consensus 547 ~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~ 594 (1724)
T 4f92_B 547 LLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITN 594 (1724)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCH
Confidence 1 234678899999999996544333456799999999999999
No 38
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=1.8e-24 Score=212.58 Aligned_cols=165 Identities=14% Similarity=0.137 Sum_probs=132.9
Q ss_pred hHHHHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCc
Q psy6094 174 PKRWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAE 253 (455)
Q Consensus 174 ~~~l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae 253 (455)
...+...+....++++||||+++.+++.+++.|...+ +.+.++||++++.+|..+++.|++|..+|+||||+|+
T Consensus 16 ~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g------~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~ 89 (300)
T 3i32_A 16 LEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG------HPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAA 89 (300)
T ss_dssp HHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTT------CCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTT
T ss_pred HHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCC------CCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhh
Confidence 3345566655678999999999999999999998764 7899999999999999999999999999999999999
Q ss_pred cCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCC-CCeEEecCChhh--------------h
Q psy6094 254 TSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTL-KRSETQQYPNDV--------------L 318 (455)
Q Consensus 254 ~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~-~G~c~~L~t~~~--------------~ 318 (455)
+|+|||+|++|||++++ .|.++|.||+|||||.| +|.||.+|+..+ +
T Consensus 90 ~Gidi~~v~~VI~~d~p------------------~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~ 151 (300)
T 3i32_A 90 RGLDIPQVDLVVHYRMP------------------DRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 151 (300)
T ss_dssp CSTTCCCCSEEEESSCC------------------SSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCC
T ss_pred cCccccceeEEEEcCCC------------------CCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcc
Confidence 99999999999996653 46778999999999997 599999999432 2
Q ss_pred c---cCCCCcccccC-hHHHHHH--------------HhhhcCCCChhhHHhHHhhhhhccc
Q psy6094 319 N---MLKDPELEGVN-NDVIFSL--------------LQHICTTQRPGAILVFLPGWDTINS 362 (455)
Q Consensus 319 ~---~~~~PEi~r~~-~~~~L~~--------------l~~~~~~P~~~~i~~al~~L~~lga 362 (455)
. ....|||.+.+ ..+++++ +..++++|+++.+..|+..|.....
T Consensus 152 ~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 152 KRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred eEeCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 2 23456777777 6666632 2356778999999999999865443
No 39
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.89 E-value=1.8e-23 Score=221.20 Aligned_cols=115 Identities=18% Similarity=0.175 Sum_probs=55.4
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCC------CCCeEEEeecCCCChhhHhhhhcCCCC-CceEEEEeCCCCccCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFN------SSRFQIIPLHSMLPTVSQKSIFNTPPE-GVRKIVLATNIAETSI 256 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~------~~~~~v~~lhs~l~~~~r~~v~~~~~~-g~~kVivaTniae~gi 256 (455)
..++.+|||++++..++.+++.|....... -.+.....+||++++++|.++++.|++ |..+|+|||+++++||
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 467 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCC
Confidence 467899999999999999999998752110 012345567889999999999999999 9999999999999999
Q ss_pred CCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCChhh
Q psy6094 257 TIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPNDV 317 (455)
Q Consensus 257 tI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~~ 317 (455)
|+|++++||+ ||+ |-|..++.||+|| ||.++|.||.|++...
T Consensus 468 Dip~v~~VI~--------~d~----------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~ 509 (556)
T 4a2p_A 468 DIVQCNLVVL--------YEY----------SGNVTKMIQVRGR-GRAAGSKCILVTSKTE 509 (556)
T ss_dssp -----CEEEE--------ETC----------CSCHHHHHHC---------CCEEEEESCHH
T ss_pred CchhCCEEEE--------eCC----------CCCHHHHHHhcCC-CCCCCceEEEEEeCcc
Confidence 9999999998 553 3466788999999 9998899999999553
No 40
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.88 E-value=2.2e-22 Score=212.38 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=73.4
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCC------CCCeEEEeecCCCChhhHhhhhcCCCC-CceEEEEeCCCCccCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFN------SSRFQIIPLHSMLPTVSQKSIFNTPPE-GVRKIVLATNIAETSI 256 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~------~~~~~v~~lhs~l~~~~r~~v~~~~~~-g~~kVivaTniae~gi 256 (455)
..++.+|||+++...++.+++.|...+... -.+.....+||++++++|.++++.|++ |..+|+|||+++++||
T Consensus 387 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gl 466 (555)
T 3tbk_A 387 KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGI 466 (555)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCE
T ss_pred CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCC
Confidence 456899999999999999999999764210 012344556789999999999999999 9999999999999999
Q ss_pred CCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCChh
Q psy6094 257 TIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPND 316 (455)
Q Consensus 257 tI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~ 316 (455)
|+|++++||+ ||++. |..++.||+|| ||..+|.||.|++..
T Consensus 467 Dlp~v~~VI~--------~d~p~----------s~~~~~Qr~GR-gR~~~g~~~~l~~~~ 507 (555)
T 3tbk_A 467 DIAECNLVIL--------YEYVG----------NVIKMIQTRGR-GRARDSKCFLLTSSA 507 (555)
T ss_dssp ETTSCSEEEE--------ESCCS----------SCCCEECSSCC-CTTTSCEEEEEESCH
T ss_pred ccccCCEEEE--------eCCCC----------CHHHHHHhcCc-CcCCCceEEEEEcCC
Confidence 9999999999 55443 33456699999 999889999999954
No 41
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.88 E-value=2.1e-22 Score=207.71 Aligned_cols=110 Identities=20% Similarity=0.237 Sum_probs=96.9
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecC--------CCChhhHhhhhcCCCCCceEEEEeCCCCccC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHS--------MLPTVSQKSIFNTPPEGVRKIVLATNIAETS 255 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs--------~l~~~~r~~v~~~~~~g~~kVivaTniae~g 255 (455)
..++.+|||+++...++.+++.|...+ +.+..+|| +++.++|.++++.|.+|..+|+|||+++++|
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~~------~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~G 432 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKDG------IKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEG 432 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTT------CCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGG
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHcC------CCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccC
Confidence 468899999999999999999999874 77999999 9999999999999999999999999999999
Q ss_pred CCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCChhh
Q psy6094 256 ITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPNDV 317 (455)
Q Consensus 256 itI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~~ 317 (455)
+|+|++++||.++. |-+.+.+.||+||+||.++|.||+|+++..
T Consensus 433 ldl~~~~~Vi~~d~------------------~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t 476 (494)
T 1wp9_A 433 LDVPEVDLVVFYEP------------------VPSAIRSIQRRGRTGRHMPGRVIILMAKGT 476 (494)
T ss_dssp GGSTTCCEEEESSC------------------CHHHHHHHHHHTTSCSCCCSEEEEEEETTS
T ss_pred CCchhCCEEEEeCC------------------CCCHHHHHHHHhhccCCCCceEEEEEecCC
Confidence 99999999998443 346678999999999999999999999543
No 42
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.87 E-value=4.7e-23 Score=234.07 Aligned_cols=212 Identities=15% Similarity=0.136 Sum_probs=141.2
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccch-hhhhh--------------------------hh
Q psy6094 44 RRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHL-DFITL--------------------------KR 96 (455)
Q Consensus 44 ~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtql-p~ll~--------------------------e~ 96 (455)
..+.+.++..-....+++|.++++.+.++++++++|+||||||+.. +.++. ..
T Consensus 65 ~~~~~~~~~~~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 65 EDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HHHHHHHHHHSSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHh
Confidence 3445555555555788999999999999999999999999999632 22111 10
Q ss_pred c---CC----------------------------CCChHHHHHhccCCCCcCcc------h----------HHHHH----
Q psy6094 97 S---ET----------------------------QQYPNDVLNMLKDPELEGVN------N----------DVIFS---- 125 (455)
Q Consensus 97 ~---~~----------------------------vg~p~~ll~~l~d~~L~~~~------~----------D~ll~---- 125 (455)
+ .. ||+|.+|++.+....+.+++ + |.+|.
T Consensus 145 ~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf 224 (1104)
T 4ddu_A 145 ADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGI 224 (1104)
T ss_dssp SCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSC
T ss_pred hCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCC
Confidence 0 01 12344554443101122222 2 77776
Q ss_pred --H-HHHHHHhcC-----------CCCeEEEEccCC-CCC-cc------ce------EEeehhhhhhhhccCCCCChHHH
Q psy6094 126 --L-LQHICTTQR-----------PGAILVYCTYTF-MGV-SP------MK------VFFCKNVLQRLMKGVGANSPKRW 177 (455)
Q Consensus 126 --~-lk~il~~~~-----------~~~k~ilmSAT~-~g~-~p------v~------~~~l~~~~~~~~~~~~~~~~~~l 177 (455)
. ++.++...+ ++.|+++||||+ +.. .. +. ....+.+.+.+... .....+
T Consensus 225 ~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~~~~~~~i~~~~~~~---~k~~~L 301 (1104)
T 4ddu_A 225 PEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISS---RSKEKL 301 (1104)
T ss_dssp CHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBCCCCCCCEEEEEESC---CCHHHH
T ss_pred CHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccCCCCcCCceeEEEec---CHHHHH
Confidence 2 556654434 789999999994 322 10 00 00001111111111 233345
Q ss_pred HHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEE-eecCCCChhhHhhhhcCCCCCceEEEEe----CCCC
Q psy6094 178 VKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQII-PLHSMLPTVSQKSIFNTPPEGVRKIVLA----TNIA 252 (455)
Q Consensus 178 ~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~-~lhs~l~~~~r~~v~~~~~~g~~kViva----Tnia 252 (455)
...+.. .++++||||+++..++.+++.|...+ +.+. .+|| +|.+ ++.|++|..+|||| ||++
T Consensus 302 ~~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~g------~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~Tdvl 368 (1104)
T 4ddu_A 302 VELLEI-FRDGILIFAQTEEEGKELYEYLKRFK------FNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKL 368 (1104)
T ss_dssp HHHHHH-HCSSEEEEESSSHHHHHHHHHHHHTT------CCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHH
T ss_pred HHHHHh-cCCCEEEEECcHHHHHHHHHHHHhCC------CCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCee
Confidence 555553 46999999999999999999999864 6787 9999 2555 88999999999999 9999
Q ss_pred ccCCCCCC-eeEEEeCCCCc
Q psy6094 253 ETSITIDD-IVYVVDCGKTK 271 (455)
Q Consensus 253 e~gitI~~-V~~VID~g~~k 271 (455)
++|||||+ |++||++|+|+
T Consensus 369 arGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 369 TRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp CCSCCCTTTCCEEEEESCCE
T ss_pred EecCcCCCCCCEEEEECCCC
Confidence 99999999 99999999998
No 43
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.86 E-value=7.4e-22 Score=215.30 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=87.5
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCC--------CChhhHhhhhcCCCCCceEEEEeCCCCccCCC
Q psy6094 186 VVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSM--------LPTVSQKSIFNTPPEGVRKIVLATNIAETSIT 257 (455)
Q Consensus 186 ~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~--------l~~~~r~~v~~~~~~g~~kVivaTniae~git 257 (455)
++.+|||+++++.++.+++.|.....+...++.+..+||+ |++.+|.++++.|++|..+|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 7899999999999999999999864333335889999999 99999999999999999999999999999999
Q ss_pred CCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCC
Q psy6094 258 IDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYP 314 (455)
Q Consensus 258 I~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t 314 (455)
+|++++||+ ||+ |-|.+++.||+|||||.+ .++.++.
T Consensus 480 ip~v~~VI~--------~d~----------p~s~~~~~Qr~GRArr~g--~~~~l~~ 516 (699)
T 4gl2_A 480 IKECNIVIR--------YGL----------VTNEIAMVQARGRARADE--STYVLVA 516 (699)
T ss_dssp CCSCCCCEE--------ESC----------CCCHHHHHHHHTTSCSSS--CEEEEEE
T ss_pred cccCCEEEE--------eCC----------CCCHHHHHHHcCCCCCCC--ceEEEEE
Confidence 999999998 543 345678899999988754 4555544
No 44
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.86 E-value=1.2e-22 Score=222.53 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=92.4
Q ss_pred HHHHHHc--cCCCCEEEEcCCHH--------HHHHHHHHHHh-cCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEE
Q psy6094 177 WVKLLRS--MLVVPILVFLPGWD--------TINSLHRSMCQ-SSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKI 245 (455)
Q Consensus 177 l~~~i~~--~~~g~iLVFlp~~~--------ei~~l~~~L~~-~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kV 245 (455)
+...+.. ..+++++||||..+ .++.+++.|.. .. +++.+..+||+|++++|..+++.|++|..+|
T Consensus 567 l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~----~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~I 642 (780)
T 1gm5_A 567 VYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVF----PEFKLGLMHGRLSQEEKDRVMLEFAEGRYDI 642 (780)
T ss_dssp HHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC-------CBCCCCSSSCCSCSHHHHHHHTTTSSSB
T ss_pred HHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhc----CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeE
Confidence 4444443 46788999999654 45666776765 21 2477899999999999999999999999999
Q ss_pred EEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 246 VLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 246 ivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
+|||+++|+|||+|++++||+.+. +. .+.+++.||+||+||.+. |.||.+++
T Consensus 643 LVaT~vie~GIDiP~v~~VIi~d~--------~r---------~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 643 LVSTTVIEVGIDVPRANVMVIENP--------ER---------FGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp CCCSSCCCSCSCCTTCCEEEBCSC--------SS---------SCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred EEECCCCCccccCCCCCEEEEeCC--------CC---------CCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 999999999999999999998443 21 134678899999999775 99999997
No 45
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.86 E-value=2.6e-21 Score=214.31 Aligned_cols=115 Identities=18% Similarity=0.176 Sum_probs=61.3
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCC------CCeEEEeecCCCChhhHhhhhcCCCC-CceEEEEeCCCCccCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNS------SRFQIIPLHSMLPTVSQKSIFNTPPE-GVRKIVLATNIAETSI 256 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~------~~~~v~~lhs~l~~~~r~~v~~~~~~-g~~kVivaTniae~gi 256 (455)
..++.+|||++++..++.+++.|........ .+.....+||++++.+|..+++.|++ |..+|+|||+++++||
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GI 708 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCC
Confidence 4568999999999999999999987532110 12345667999999999999999999 9999999999999999
Q ss_pred CCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCChhh
Q psy6094 257 TIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPNDV 317 (455)
Q Consensus 257 tI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~~ 317 (455)
|+|++++||+ ||+ |-|..++.||+|| ||..+|.||.|++...
T Consensus 709 Dlp~v~~VI~--------yd~----------p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~ 750 (797)
T 4a2q_A 709 DIVQCNLVVL--------YEY----------SGNVTKMIQVRGR-GRAAGSKCILVTSKTE 750 (797)
T ss_dssp --CCCSEEEE--------ESC----------CSCHHHHHTC--------CCCEEEEECCHH
T ss_pred CchhCCEEEE--------eCC----------CCCHHHHHHhcCC-CCCCCceEEEEEeCCc
Confidence 9999999998 543 3466788999999 9998899999999543
No 46
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.85 E-value=7.7e-22 Score=223.84 Aligned_cols=199 Identities=11% Similarity=0.053 Sum_probs=126.1
Q ss_pred HccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCccc-chhhhhh------------------------------hhcC---
Q psy6094 53 RKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPL-HLDFITL------------------------------KRSE--- 98 (455)
Q Consensus 53 R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTt-qlp~ll~------------------------------e~~~--- 98 (455)
.+.. . ++|.++++.+.+|++++++|+||||||+ ++|.+.. ..+.
T Consensus 54 ~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~ 131 (1054)
T 1gku_B 54 VGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTE 131 (1054)
T ss_dssp TCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGG
T ss_pred cCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCcc
Confidence 3444 5 9999999999999999999999999994 4442211 1111
Q ss_pred -CC----C----------------------ChHHHHHhccCCCCcCcc------hHHHHH---HHHHHHHhc--------
Q psy6094 99 -TQ----Q----------------------YPNDVLNMLKDPELEGVN------NDVIFS---LLQHICTTQ-------- 134 (455)
Q Consensus 99 -~v----g----------------------~p~~ll~~l~d~~L~~~~------~D~ll~---~lk~il~~~-------- 134 (455)
.+ | +|.+|++.+.. |..++ +|.++. .++.++...
T Consensus 132 ~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~--L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~~ 209 (1054)
T 1gku_B 132 NLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE--LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKT 209 (1054)
T ss_dssp GSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT--SCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETTT
T ss_pred ceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH--hccCCEEEEeChhhhhhccccHHHHHHHhCcchhhhh
Confidence 11 1 24445555522 44555 666664 233333222
Q ss_pred ---CCCCeEEEEccCCCCCccceEEeehhh---------------hhhhhccCCCCChHHHHHHHHccCCCCEEEEcCCH
Q psy6094 135 ---RPGAILVYCTYTFMGVSPMKVFFCKNV---------------LQRLMKGVGANSPKRWVKLLRSMLVVPILVFLPGW 196 (455)
Q Consensus 135 ---~~~~k~ilmSAT~~g~~pv~~~~l~~~---------------~~~~~~~~~~~~~~~l~~~i~~~~~g~iLVFlp~~ 196 (455)
+...++++||||++........++.++ .+.+. .......+...+. ..++++||||+++
T Consensus 210 ~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~~L~~ll~-~~~~~~LVF~~t~ 285 (1054)
T 1gku_B 210 KSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESISTLSSILE-KLGTGGIIYARTG 285 (1054)
T ss_dssp TEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTTTTHHHHT-TSCSCEEEEESSH
T ss_pred hhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHHHHHHHHh-hcCCCEEEEEcCH
Confidence 356789999999943200000011110 01111 0111222444444 4468899999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEe----CCCCccCCCCCCe-eEEEeCCCCc
Q psy6094 197 DTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA----TNIAETSITIDDI-VYVVDCGKTK 271 (455)
Q Consensus 197 ~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kViva----Tniae~gitI~~V-~~VID~g~~k 271 (455)
++++.+++.|... +.+..+||++. .+++.|++|..+|||| ||++++|||||+| ++||++|.++
T Consensus 286 ~~a~~l~~~L~~~-------~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~ 353 (1054)
T 1gku_B 286 EEAEEIYESLKNK-------FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS 353 (1054)
T ss_dssp HHHHHHHHTTTTS-------SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCE
T ss_pred HHHHHHHHHHhhc-------cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCc
Confidence 9999999988764 67999999983 5677788999999999 9999999999995 9999999993
No 47
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.84 E-value=7.8e-21 Score=217.01 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=96.4
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeE
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVY 263 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~ 263 (455)
..+++++|||++.++++.+++.|+... +++.+..+||++++.+|.++++.|.+|..+|+|||+++|+|||||++++
T Consensus 810 ~~g~qvlvf~~~v~~~~~l~~~L~~~~----p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~ 885 (1151)
T 2eyq_A 810 LRGGQVYYLYNDVENIQKAAERLAELV----PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 885 (1151)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHHC----TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEE
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHHhC----CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcE
Confidence 467899999999999999999998863 2477999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCCh
Q psy6094 264 VVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPN 315 (455)
Q Consensus 264 VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~ 315 (455)
||. +++. +.+.+++.||+||+||.+. |.||.+++.
T Consensus 886 VIi--------~~~~---------~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~ 921 (1151)
T 2eyq_A 886 III--------ERAD---------HFGLAQLHQLRGRVGRSHHQAYAWLLTPH 921 (1151)
T ss_dssp EEE--------TTTT---------SSCHHHHHHHHTTCCBTTBCEEEEEEECC
T ss_pred EEE--------eCCC---------CCCHHHHHHHHhccCcCCCceEEEEEECC
Confidence 995 3221 1234678899999999875 999999984
No 48
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.84 E-value=7.4e-21 Score=213.72 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=61.6
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCC------CCCeEEEeecCCCChhhHhhhhcCCCC-CceEEEEeCCCCccCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFN------SSRFQIIPLHSMLPTVSQKSIFNTPPE-GVRKIVLATNIAETSI 256 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~------~~~~~v~~lhs~l~~~~r~~v~~~~~~-g~~kVivaTniae~gi 256 (455)
..++.+|||+++++.++.+++.|.....+. -.+.....+||++++.+|.++++.|+. |..+|||||+++++||
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGI 708 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCC
Confidence 356899999999999999999999863211 012345567999999999999999999 9999999999999999
Q ss_pred CCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCChh
Q psy6094 257 TIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPND 316 (455)
Q Consensus 257 tI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~~ 316 (455)
|||++++||+ ||+ |-|..++.||+|| ||.++|.||.|++..
T Consensus 709 Dlp~v~~VI~--------yD~----------p~s~~~~iQr~GR-GR~~~g~vi~Li~~~ 749 (936)
T 4a2w_A 709 DIVQCNLVVL--------YEY----------SGNVTKMIQVRGR-GRAAGSKCILVTSKT 749 (936)
T ss_dssp -CCCCSEEEE--------ESC----------CSCSHHHHCC--------CCCEEEEESCH
T ss_pred cchhCCEEEE--------eCC----------CCCHHHHHHhcCC-CCCCCCEEEEEEeCC
Confidence 9999999998 554 3456778899999 999889999999954
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.83 E-value=2.5e-20 Score=201.93 Aligned_cols=104 Identities=20% Similarity=0.152 Sum_probs=91.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCC-----
Q psy6094 185 LVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITID----- 259 (455)
Q Consensus 185 ~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~----- 259 (455)
.+.++|||+.+.+.++.+++.|...+ +.+..|||.+.+.++..+.+.++.| .|+||||+|+||+||+
T Consensus 431 ~~~pvLVft~s~~~se~Ls~~L~~~g------i~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V 502 (844)
T 1tf5_A 431 TGQPVLVGTVAVETSELISKLLKNKG------IPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGV 502 (844)
T ss_dssp HTCCEEEEESCHHHHHHHHHHHHTTT------CCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTS
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHCC------CCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchh
Confidence 46789999999999999999999875 7788999999998888777777766 5999999999999999
Q ss_pred ---CeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 260 ---DIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 260 ---~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
++.+||++.+ |-|...+.||+||+||.|. |.++.+++
T Consensus 503 ~~~ggl~VIn~d~------------------p~s~r~y~hr~GRTGRqG~~G~s~~~vs 543 (844)
T 1tf5_A 503 KELGGLAVVGTER------------------HESRRIDNQLRGRSGRQGDPGITQFYLS 543 (844)
T ss_dssp GGGTSEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEE
T ss_pred hhcCCcEEEEecC------------------CCCHHHHHhhcCccccCCCCCeEEEEec
Confidence 8999999655 4566778899999999887 99998888
No 50
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=3.5e-20 Score=167.62 Aligned_cols=122 Identities=20% Similarity=0.229 Sum_probs=101.4
Q ss_pred HHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCC
Q psy6094 177 WVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSI 256 (455)
Q Consensus 177 l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gi 256 (455)
+...+....++++|||+++...++.+++.|...+ +.+..+||++++.+|..+++.|++|..+|+|||+++++|+
T Consensus 25 L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~------~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gi 98 (175)
T 2rb4_A 25 LCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDG------HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGI 98 (175)
T ss_dssp HHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTT------CCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTT
T ss_pred HHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC------CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCC
Confidence 5555555667899999999999999999999864 7799999999999999999999999999999999999999
Q ss_pred CCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 257 TIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 257 tI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
|+|++++||+++.+... ....+..++.||+|||||.+. |.||.+++..
T Consensus 99 d~~~~~~Vi~~d~p~~~------------~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 147 (175)
T 2rb4_A 99 DVKQVTIVVNFDLPVKQ------------GEEPDYETYLHRIGRTGRFGKKGLAFNMIEVD 147 (175)
T ss_dssp CCTTEEEEEESSCCC--------------CCSCCHHHHHHHHCBC----CCEEEEEEECGG
T ss_pred CcccCCEEEEeCCCCCc------------cccCCHHHHHHHhcccccCCCCceEEEEEccc
Confidence 99999999996654111 123678899999999999865 9999999954
No 51
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.81 E-value=4e-20 Score=165.39 Aligned_cols=117 Identities=16% Similarity=0.197 Sum_probs=104.5
Q ss_pred HHHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccC
Q psy6094 176 RWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETS 255 (455)
Q Consensus 176 ~l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~g 255 (455)
.+...+....++++|||+++...++.+++.|...+ +.+..+||++++.+|..+++.|++|..+|+|||+++++|
T Consensus 25 ~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~------~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 98 (163)
T 2hjv_A 25 LLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLG------YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARG 98 (163)
T ss_dssp HHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTT------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTT
T ss_pred HHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcC------CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcC
Confidence 35566666678899999999999999999999864 789999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 256 ITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 256 itI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
+|+|++++||+++. |.|.+++.||+||+||.+. |.|+.+++..
T Consensus 99 ld~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 142 (163)
T 2hjv_A 99 IDIENISLVINYDL------------------PLEKESYVHRTGRTGRAGNKGKAISFVTAF 142 (163)
T ss_dssp CCCSCCSEEEESSC------------------CSSHHHHHHHTTTSSCTTCCEEEEEEECGG
T ss_pred CchhcCCEEEEeCC------------------CCCHHHHHHhccccCcCCCCceEEEEecHH
Confidence 99999999999543 4577889999999999875 9999999954
No 52
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.80 E-value=2.3e-20 Score=167.15 Aligned_cols=117 Identities=19% Similarity=0.299 Sum_probs=100.5
Q ss_pred HHHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccC
Q psy6094 176 RWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETS 255 (455)
Q Consensus 176 ~l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~g 255 (455)
.+...+....++++|||+++...++.+++.|...+ +.+..+||++++.+|..+++.|++|..+|+|||+++++|
T Consensus 20 ~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 93 (165)
T 1fuk_A 20 CLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK------FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 93 (165)
T ss_dssp HHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTT------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTT
T ss_pred HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcC
Confidence 35566665678899999999999999999999864 779999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 256 ITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 256 itI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
+|+|++++||+++. |.|.+++.||+||+||.+. |.||.+++.+
T Consensus 94 ~d~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 137 (165)
T 1fuk_A 94 IDVQQVSLVINYDL------------------PANKENYIHRIGRGGRFGRKGVAINFVTNE 137 (165)
T ss_dssp CCCCSCSEEEESSC------------------CSSGGGGGGSSCSCC-----CEEEEEEETT
T ss_pred CCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEEEcch
Confidence 99999999999554 3466778899999999865 9999999844
No 53
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=99.79 E-value=1.7e-19 Score=174.05 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=92.2
Q ss_pred HHhhhcCCCChhhHHhHHhhhhhcccccCCCCCCcccCChHHHHHhhCCCCh---------------hHHHHHHHhhc--
Q psy6094 337 LLQHICTTQRPGAILVFLPGWDTINSLHRSMCQSSFFNSCLLYEFAMVDNKP---------------KEIITVRDCLS-- 399 (455)
Q Consensus 337 ~l~~~~~~P~~~~i~~al~~L~~lgald~~~~l~~~~~T~lG~~l~~lp~~p---------------~~~l~iaa~ls-- 399 (455)
++..++|||+.+++..|++.|..+||||.+|+| |++|+.|+.||+|| +++++|||+||
T Consensus 7 ~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~l-----T~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~ 81 (270)
T 3i4u_A 7 EFELGTRGSPMETLITAMEQLYTLGALDDEGLL-----TRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQ 81 (270)
T ss_dssp -------CCHHHHHHHHHHHHHHHTSBCTTSCB-----CHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred ccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCc-----cHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCC
Confidence 344459999999999999999999999999999 99999999999999 89999999999
Q ss_pred --CcCCcChHHHHHHHHhhhC-CCCcHHHHHHHHHHHhcCCCCchHhHHHhh
Q psy6094 400 --FECKPSTAKIIKELRARLD-MLLAHKLSHPGTTAWGDPNEGNILHCCSGF 448 (455)
Q Consensus 400 --f~~p~~~~~~~~~~~~~~~-~~sD~~~~~~~~~~~~~~~~~~~~~~c~~~ 448 (455)
|..|.+++++++++|++|. ..|||++++|+|++|.+.+.+ ++||++|
T Consensus 82 ~~f~~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~--~~wC~~~ 131 (270)
T 3i4u_A 82 NVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFS--NPWCYEN 131 (270)
T ss_dssp CCBCCCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTTTC--HHHHHHT
T ss_pred ccccCCchhHHHHHHHHHHccCCCChHHHHHHHHHHHHHcCch--hhHHHHh
Confidence 8889999999999999999 999999999999999986543 6899973
No 54
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.79 E-value=8.8e-20 Score=164.73 Aligned_cols=116 Identities=17% Similarity=0.229 Sum_probs=103.6
Q ss_pred HHHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccC
Q psy6094 176 RWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETS 255 (455)
Q Consensus 176 ~l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~g 255 (455)
.+...+....++++|||+++...++.+++.|...+ +.+..+||++++.+|..+++.|++|..+|+|||+++++|
T Consensus 21 ~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~------~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 94 (172)
T 1t5i_A 21 KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 94 (172)
T ss_dssp HHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTT------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTT
T ss_pred HHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcC------CCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcC
Confidence 45566666677899999999999999999999864 779999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCCh
Q psy6094 256 ITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPN 315 (455)
Q Consensus 256 itI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~ 315 (455)
+|+|++++||+++. |.|.+++.||+||+||.|. |.|+.+++.
T Consensus 95 ldi~~~~~Vi~~d~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~ 137 (172)
T 1t5i_A 95 MDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITFVSD 137 (172)
T ss_dssp CCGGGCSEEEESSC------------------CSSHHHHHHHHHHHTGGGCCCEEEEEECS
T ss_pred cchhhCCEEEEECC------------------CCCHHHHHHHhcccccCCCCcEEEEEEcC
Confidence 99999999999443 3567889999999999876 999999983
No 55
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.79 E-value=9.7e-20 Score=189.59 Aligned_cols=113 Identities=14% Similarity=0.094 Sum_probs=94.2
Q ss_pred HHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCC
Q psy6094 177 WVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSI 256 (455)
Q Consensus 177 l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gi 256 (455)
+...+....++++|||+++.+.++.+++.|. +..+||+++..+|.++++.|++|..+|||||+++++|+
T Consensus 340 l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gl 408 (472)
T 2fwr_A 340 LREILERHRKDKIIIFTRHNELVYRISKVFL-----------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGI 408 (472)
T ss_dssp HHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSS
T ss_pred HHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCc
Confidence 4444554668899999999999999998774 33589999999999999999999999999999999999
Q ss_pred CCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCC----eEEecCChhhh
Q psy6094 257 TIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKR----SETQQYPNDVL 318 (455)
Q Consensus 257 tI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G----~c~~L~t~~~~ 318 (455)
|+|++++||+ ||+ |-|..++.||+||+||.++| .+|.++++...
T Consensus 409 dlp~~~~Vi~--------~~~----------~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ 456 (472)
T 2fwr_A 409 DVPDANVGVI--------MSG----------SGSAREYIQRLGRILRPSKGKKEAVLYELISRGTG 456 (472)
T ss_dssp CSCCBSEEEE--------ECC----------SSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC
T ss_pred ccccCcEEEE--------ECC----------CCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCc
Confidence 9999999998 432 34567889999999998877 56677765443
No 56
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.78 E-value=1.5e-19 Score=165.26 Aligned_cols=118 Identities=18% Similarity=0.222 Sum_probs=89.8
Q ss_pred HHHHHHHcc-CCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCcc
Q psy6094 176 RWVKLLRSM-LVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAET 254 (455)
Q Consensus 176 ~l~~~i~~~-~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~ 254 (455)
.+...+... .++++|||+++...++.+++.|...+ +.+..+||++++.+|..+++.|++|..+|+|||+++++
T Consensus 35 ~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g------~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 108 (185)
T 2jgn_A 35 FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 108 (185)
T ss_dssp HHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTT------CCEEEEC--------CHHHHHHHHTSSSEEEEEC----
T ss_pred HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcC------CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhc
Confidence 355666543 57899999999999999999999864 78999999999999999999999999999999999999
Q ss_pred CCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChhh
Q psy6094 255 SITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPNDV 317 (455)
Q Consensus 255 gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~~ 317 (455)
|+|+|++++||+++. |.|.+++.||+||+||.|. |.|+.+++..+
T Consensus 109 Gldi~~~~~VI~~d~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 154 (185)
T 2jgn_A 109 GLDISNVKHVINFDL------------------PSDIEEYVHRIGRTGRVGNLGLATSFFNERN 154 (185)
T ss_dssp --CCCSBSEEEESSC------------------CSSHHHHHHHHTTBCCTTSCEEEEEEECGGG
T ss_pred CCCcccCCEEEEeCC------------------CCCHHHHHHHccccCCCCCCcEEEEEEchhh
Confidence 999999999999443 3467889999999999875 99999999553
No 57
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.77 E-value=1.9e-19 Score=165.39 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=99.2
Q ss_pred HHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCC
Q psy6094 177 WVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSI 256 (455)
Q Consensus 177 l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gi 256 (455)
+...+. ..++++|||+++...++.+++.|...+ +.+..+||++++.+|..+++.|++|..+|+|||+++++|+
T Consensus 46 L~~~l~-~~~~~~lVF~~~~~~~~~l~~~L~~~g------~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gl 118 (191)
T 2p6n_A 46 LLECLQ-KTPPPVLIFAEKKADVDAIHEYLLLKG------VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGL 118 (191)
T ss_dssp HHHHHT-TSCSCEEEECSCHHHHHHHHHHHHHHT------CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTC
T ss_pred HHHHHH-hCCCCEEEEECCHHHHHHHHHHHHHcC------CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCC
Confidence 555554 456789999999999999999998864 7799999999999999999999999999999999999999
Q ss_pred CCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 257 TIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 257 tI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
|+|++++||+++. |.+..++.||+||+||.|. |.|+.+++..
T Consensus 119 di~~v~~VI~~d~------------------p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 119 DFPAIQHVINYDM------------------PEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp CCCCCSEEEESSC------------------CSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred CcccCCEEEEeCC------------------CCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 9999999999443 3567789999999999875 9999999843
No 58
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.76 E-value=6.9e-18 Score=182.89 Aligned_cols=105 Identities=20% Similarity=0.162 Sum_probs=90.8
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCe--
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDI-- 261 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V-- 261 (455)
..+.++|||+.+.+.++.+++.|...+ +.+..|||...+.++..+.+.+++| .|+||||+|.||+||+.+
T Consensus 458 ~~gqpvLVft~Sie~sE~Ls~~L~~~G------i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~ 529 (922)
T 1nkt_A 458 AKGQPVLIGTTSVERSEYLSRQFTKRR------IPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGN 529 (922)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHHHTT------CCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCC
T ss_pred hcCCcEEEEECCHHHHHHHHHHHHHCC------CCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCC
Confidence 345689999999999999999999875 7788899998888888888888888 699999999999999975
Q ss_pred --------------------------------------------------eEEEeCCCCcccccccCCCcccccccccch
Q psy6094 262 --------------------------------------------------VYVVDCGKTKMSNFDVKDNIATLKPEWISL 291 (455)
Q Consensus 262 --------------------------------------------------~~VID~g~~k~~~yd~~~~~~~l~~~~iSk 291 (455)
.|||++.+ |-|+
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~------------------pes~ 591 (922)
T 1nkt_A 530 VDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTER------------------HESR 591 (922)
T ss_dssp HHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSC------------------CSSH
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccC------------------CCCH
Confidence 59999655 4566
Q ss_pred hhHHhhhcccCCCCC-CeEEecCC
Q psy6094 292 ANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 292 a~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
..+.||+||+||.|. |.+..+.+
T Consensus 592 riy~qr~GRTGRqGdpG~s~fflS 615 (922)
T 1nkt_A 592 RIDNQLRGRSGRQGDPGESRFYLS 615 (922)
T ss_dssp HHHHHHHHTSSGGGCCEEEEEEEE
T ss_pred HHHHHHhcccccCCCCeeEEEEec
Confidence 778899999999887 99888777
No 59
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.76 E-value=3e-18 Score=185.34 Aligned_cols=105 Identities=16% Similarity=0.141 Sum_probs=91.8
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCC---
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDD--- 260 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~--- 260 (455)
..+.++|||+++...++.+++.|...+ +.+..|||...+.++..+.+.+++| .|+||||+|.||+||+.
T Consensus 439 ~~gqpvLVft~sie~se~Ls~~L~~~g------i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn 510 (853)
T 2fsf_A 439 AKGQPVLVGTISIEKSELVSNELTKAG------IKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGS 510 (853)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHTT------CCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCC
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHHCC------CCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCc
Confidence 356789999999999999999999875 7788899999888888888889888 69999999999999997
Q ss_pred -----------------------------e-----eEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC
Q psy6094 261 -----------------------------I-----VYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK 306 (455)
Q Consensus 261 -----------------------------V-----~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~ 306 (455)
| .+||++.+ |-|+..+.||+||+||.|.
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~------------------pes~riy~qr~GRTGRqGd 572 (853)
T 2fsf_A 511 WQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTER------------------HESRRIDNQLRGRSGRQGD 572 (853)
T ss_dssp HHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSC------------------CSSHHHHHHHHTTSSGGGC
T ss_pred hHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccC------------------CCCHHHHHhhccccccCCC
Confidence 4 69999665 4566778899999999887
Q ss_pred -CeEEecCC
Q psy6094 307 -RSETQQYP 314 (455)
Q Consensus 307 -G~c~~L~t 314 (455)
|.+..+.+
T Consensus 573 ~G~s~~fls 581 (853)
T 2fsf_A 573 AGSSRFYLS 581 (853)
T ss_dssp CEEEEEEEE
T ss_pred CeeEEEEec
Confidence 99888777
No 60
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.76 E-value=3.2e-19 Score=187.48 Aligned_cols=105 Identities=13% Similarity=0.078 Sum_probs=88.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeC-CCCccCCCCCCeeE
Q psy6094 185 LVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLAT-NIAETSITIDDIVY 263 (455)
Q Consensus 185 ~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaT-niae~gitI~~V~~ 263 (455)
.+..++||++ .++++.+++.|...+ ..+..+||++++.+|.++++.|.+|..+|+||| +++++|+|+|++++
T Consensus 347 ~~~~~ivf~~-~~~~~~l~~~L~~~~------~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~ 419 (510)
T 2oca_A 347 DENAFVMFKH-VSHGKAIFDLIKNEY------DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHH 419 (510)
T ss_dssp TCEEEEEESS-HHHHHHHHHHHHTTC------SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEE
T ss_pred CCCeEEEEec-HHHHHHHHHHHHHcC------CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcE
Confidence 3445666666 889999999998764 368899999999999999999999999999999 99999999999999
Q ss_pred EEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCC-eEEecCC
Q psy6094 264 VVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKR-SETQQYP 314 (455)
Q Consensus 264 VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G-~c~~L~t 314 (455)
||..+. . .|.+++.||+||+||.++| .++.+|+
T Consensus 420 vi~~~~--------~----------~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 420 VVLAHG--------V----------KSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEESSC--------C----------CSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EEEeCC--------C----------CCHHHHHHHHhcccccCCCCceEEEEE
Confidence 997432 2 3457788999999999885 4777777
No 61
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.61 E-value=6e-20 Score=165.37 Aligned_cols=116 Identities=18% Similarity=0.203 Sum_probs=101.7
Q ss_pred HHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCC
Q psy6094 177 WVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSI 256 (455)
Q Consensus 177 l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gi 256 (455)
+..++....++.+|||+++...++.+++.|...+ +.+..+||++++.+|..+++.|++|..+|+|||+++++|+
T Consensus 21 l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~------~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 94 (170)
T 2yjt_D 21 LVHLLKQPEATRSIVFVRKRERVHELANWLREAG------INNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGI 94 (170)
Confidence 4455554567899999999999999999998763 7899999999999999999999999999999999999999
Q ss_pred CCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCChh
Q psy6094 257 TIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYPND 316 (455)
Q Consensus 257 tI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t~~ 316 (455)
|+|++++||+++. |.|.+++.||+||+||.+. |.|+.+++..
T Consensus 95 d~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 137 (170)
T 2yjt_D 95 DIPDVSHVFNFDM------------------PRSGDTYLHRIGRTARAGRKGTAISLVEAH 137 (170)
Confidence 9999999998553 3466778899999999875 9999999854
No 62
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.67 E-value=5.8e-17 Score=173.51 Aligned_cols=104 Identities=16% Similarity=0.068 Sum_probs=82.6
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCC--CCCCeEEEeecCCCChhhHhhhhcCCCCCceE---EEEeCCCCccCCCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFF--NSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRK---IVLATNIAETSITI 258 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~--~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~k---VivaTniae~gitI 258 (455)
...+++||||++.+.++.+++.|...... ....-.+..+||+++. +|..+++.|.+|..+ |++||+++++|||+
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 45689999999999999999999875310 0011237778998764 688899999887665 89999999999999
Q ss_pred CCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC
Q psy6094 259 DDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK 306 (455)
Q Consensus 259 ~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~ 306 (455)
|++++||. |++ +-|...+.||+||+||.++
T Consensus 516 p~v~~Vi~--------~~~----------~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 516 PTCKNVVL--------ARV----------VNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TTEEEEEE--------ESC----------CCCHHHHHHHHTTSCCCBG
T ss_pred hheeEEEE--------Eec----------CCChHHHHHHHhhhcccCc
Confidence 99999997 432 3466788999999999775
No 63
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.67 E-value=1.5e-16 Score=172.45 Aligned_cols=113 Identities=15% Similarity=0.082 Sum_probs=101.1
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeE
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVY 263 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~ 263 (455)
..++.+|||++++..++.+++.|...+ +.+..+||++++.+|.++++.|+.|..+|+||||++++|+|+|+|++
T Consensus 437 ~~~~~vlVf~~t~~~ae~L~~~L~~~g------i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~l 510 (664)
T 1c4o_A 437 ARGERTLVTVLTVRMAEELTSFLVEHG------IRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSL 510 (664)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHHTT------CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEE
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhcC------CCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCE
Confidence 457899999999999999999999874 67888999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCCh
Q psy6094 264 VVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPN 315 (455)
Q Consensus 264 VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~ 315 (455)
||+++..+. | .|.|..++.||+|||||.++|.|+.+++.
T Consensus 511 VI~~d~d~~-------G------~p~s~~~~iQr~GRagR~~~G~~i~~~~~ 549 (664)
T 1c4o_A 511 VAILDADKE-------G------FLRSERSLIQTIGRAARNARGEVWLYADR 549 (664)
T ss_dssp EEETTTTSC-------S------GGGSHHHHHHHHGGGTTSTTCEEEEECSS
T ss_pred EEEeCCccc-------C------CCCCHHHHHHHHCccCcCCCCEEEEEEcC
Confidence 999664322 1 26688899999999999999999999984
No 64
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.66 E-value=1.3e-16 Score=172.81 Aligned_cols=113 Identities=17% Similarity=0.105 Sum_probs=100.8
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeE
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVY 263 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~ 263 (455)
..++.+|||+++...++.+++.|...+ +.+..+||++++.+|.++++.|++|..+|+||||++++|+|+|+|++
T Consensus 443 ~~~~~vlVf~~t~~~ae~L~~~L~~~g------i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~l 516 (661)
T 2d7d_A 443 ERNERVLVTTLTKKMSEDLTDYLKEIG------IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSL 516 (661)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHTT------CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEE
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHhcC------CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCE
Confidence 457799999999999999999999874 67888999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCCCeEEecCCh
Q psy6094 264 VVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRSETQQYPN 315 (455)
Q Consensus 264 VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~G~c~~L~t~ 315 (455)
||+++..+. | .|.|..++.||+|||||.++|.|+.+++.
T Consensus 517 Vi~~d~d~~-------G------~p~s~~~~iQr~GRagR~~~G~~i~~~~~ 555 (661)
T 2d7d_A 517 VAILDADKE-------G------FLRSERSLIQTIGRAARNAEGRVIMYADK 555 (661)
T ss_dssp EEETTTTCC-------T------TTTSHHHHHHHHHTTTTSTTCEEEEECSS
T ss_pred EEEeCcccc-------c------CCCCHHHHHHHhCcccCCCCCEEEEEEeC
Confidence 999664321 1 25688899999999999988999999984
No 65
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.60 E-value=2e-15 Score=170.00 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=97.2
Q ss_pred HHHHHHccCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCc--eEEEEeCCCCcc
Q psy6094 177 WVKLLRSMLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGV--RKIVLATNIAET 254 (455)
Q Consensus 177 l~~~i~~~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~--~kVivaTniae~ 254 (455)
+..++....++.+||||++...++.+++.|.... ++.+..+||++++.+|.++++.|.+|. .+|+|||+++++
T Consensus 494 L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~-----g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~ 568 (968)
T 3dmq_A 494 LMGYLTSHRSQKVLVICAKAATALQLEQVLRERE-----GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSE 568 (968)
T ss_dssp HHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTT-----CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTC
T ss_pred HHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhc
Confidence 4445554678899999999999999999999532 378999999999999999999999997 999999999999
Q ss_pred CCCCCCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-C--eEEecCC
Q psy6094 255 SITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-R--SETQQYP 314 (455)
Q Consensus 255 gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G--~c~~L~t 314 (455)
|+|+|++++||+ ||+. -+.+.+.||.||+||.|. | .+|.++.
T Consensus 569 GlDl~~~~~VI~--------~d~p----------~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~ 613 (968)
T 3dmq_A 569 GRNFQFASHMVM--------FDLP----------FNPDLLEQRIGRLDRIGQAHDIQIHVPYL 613 (968)
T ss_dssp SSCCTTCCEEEC--------SSCC----------SSHHHHHHHHHTTSCSSSCSCCEEEEEEE
T ss_pred CCCcccCcEEEE--------ecCC----------CCHHHHHHHhhccccCCCCceEEEEEecC
Confidence 999999999998 5433 355778899999999876 5 4555555
No 66
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.47 E-value=4.9e-14 Score=150.09 Aligned_cols=112 Identities=18% Similarity=0.162 Sum_probs=91.1
Q ss_pred HHHHHHc--cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCcc
Q psy6094 177 WVKLLRS--MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAET 254 (455)
Q Consensus 177 l~~~i~~--~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~ 254 (455)
+...+.. ..+.++|||+++...++.+++.|...+ +.+..|||+..+.++..+...+++| .|+||||+|+|
T Consensus 463 l~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~G------i~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgR 534 (822)
T 3jux_A 463 IVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKG------IPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGR 534 (822)
T ss_dssp HHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTT------CCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTT
T ss_pred HHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCC------CCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhC
Confidence 4444443 356789999999999999999999875 7788899997666666565556666 59999999999
Q ss_pred CCCCC--------CeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC-CeEEecCC
Q psy6094 255 SITID--------DIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK-RSETQQYP 314 (455)
Q Consensus 255 gitI~--------~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~-G~c~~L~t 314 (455)
|+||+ ++.+||++.+ |-|...+.||+|||||.|. |.++.+++
T Consensus 535 GtDI~lg~~V~~~GglhVInte~------------------Pes~r~y~qriGRTGRqG~~G~a~~fvs 585 (822)
T 3jux_A 535 GTDIKLGPGVAELGGLCIIGTER------------------HESRRIDNQLRGRAGRQGDPGESIFFLS 585 (822)
T ss_dssp TCCCCCCTTTTTTTSCEEEESSC------------------CSSHHHHHHHHTTSSCSSCCCEEEEEEE
T ss_pred CcCccCCcchhhcCCCEEEecCC------------------CCCHHHHHHhhCccccCCCCeeEEEEec
Confidence 99998 7779999665 4566678899999999987 99988888
No 67
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.41 E-value=7.5e-13 Score=124.96 Aligned_cols=118 Identities=23% Similarity=0.415 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHH-hcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh-hhhh------------
Q psy6094 29 LDAAFKKEMIRK-LQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD-FITL------------ 94 (455)
Q Consensus 29 ~~~~~~~~~~~~-~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp-~ll~------------ 94 (455)
.++.+.+.|.+. ..++.+.++++.|+.+|++.+|.++++.+.+|+++++.|+|||||||+++ ++++
T Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~ 111 (235)
T 3llm_A 32 ISMDLKNELMYQLEQDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECN 111 (235)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCE
T ss_pred hcHHHHHHHHHHhhcCHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceE
Confidence 456677777755 47899999999999999999999999999999999999999999999877 4443
Q ss_pred --------------------hhcCC-----------------------CCChHHHHHhc-cCCCCcCcc-----------
Q psy6094 95 --------------------KRSET-----------------------QQYPNDVLNML-KDPELEGVN----------- 119 (455)
Q Consensus 95 --------------------e~~~~-----------------------vg~p~~ll~~l-~d~~L~~~~----------- 119 (455)
..+.. +++|++|++.+ . .+.+++
T Consensus 112 ~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~ 189 (235)
T 3llm_A 112 IVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERD 189 (235)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCC
T ss_pred EEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCC
Confidence 11111 12466666665 3 133333
Q ss_pred --hHHHHHHHHHHHHhcCCCCeEEEEccCCCC
Q psy6094 120 --NDVIFSLLQHICTTQRPGAILVYCTYTFMG 149 (455)
Q Consensus 120 --~D~ll~~lk~il~~~~~~~k~ilmSAT~~g 149 (455)
.|+++..++.++ ...++.|+++||||++.
T Consensus 190 ~~~~~~~~~l~~i~-~~~~~~~~il~SAT~~~ 220 (235)
T 3llm_A 190 INTDFLLVVLRDVV-QAYPEVRIVLMSATIDT 220 (235)
T ss_dssp HHHHHHHHHHHHHH-HHCTTSEEEEEECSSCC
T ss_pred cchHHHHHHHHHHH-hhCCCCeEEEEecCCCH
Confidence 677777888888 66789999999999953
No 68
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.24 E-value=7.4e-11 Score=132.79 Aligned_cols=110 Identities=6% Similarity=0.003 Sum_probs=79.5
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCC------CCCCCeEE-EeecCC----------C----------Chh---------
Q psy6094 186 VVPILVFLPGWDTINSLHRSMCQSSF------FNSSRFQI-IPLHSM----------L----------PTV--------- 229 (455)
Q Consensus 186 ~g~iLVFlp~~~ei~~l~~~L~~~~~------~~~~~~~v-~~lhs~----------l----------~~~--------- 229 (455)
++.+||||+++..+..+++.|..... .....+.+ +.+||+ + ++.
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 46799999999999999999986530 01112444 445542 2 221
Q ss_pred --------------------hHhhhhcCCCCCceEEEEeCCCCccCCCCCCeeEEEeCCCCcccccccCCCccccccccc
Q psy6094 230 --------------------SQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWI 289 (455)
Q Consensus 230 --------------------~r~~v~~~~~~g~~kVivaTniae~gitI~~V~~VID~g~~k~~~yd~~~~~~~l~~~~i 289 (455)
+|..+.++|++|..+|+|+||++.||+|+|.+. |+. +| .|.
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~-tly--------lD----------kpl 677 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLN-TLF--------VD----------KNL 677 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEE-EEE--------EE----------SCC
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCccccc-EEE--------Ec----------cCC
Confidence 366788889999999999999999999999994 553 33 234
Q ss_pred chhhHHhhhcccCCCCC-----CeEEecCC
Q psy6094 290 SLANAKQRRGRAGRTLK-----RSETQQYP 314 (455)
Q Consensus 290 Ska~~~QR~GRaGR~~~-----G~c~~L~t 314 (455)
+...+.||.||+||..+ |..+-+..
T Consensus 678 ~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 678 RYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp CHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred CccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 55678899999999875 55555554
No 69
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.23 E-value=7.7e-12 Score=120.82 Aligned_cols=112 Identities=18% Similarity=0.060 Sum_probs=81.0
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCC-ceE-EEEeCCCCccCCCCCCe
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEG-VRK-IVLATNIAETSITIDDI 261 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g-~~k-VivaTniae~gitI~~V 261 (455)
..+..+|||+.....++.+.+.|.... ++.+..+||++++++|.++++.|.+| ..+ +++||+++++|+|++++
T Consensus 110 ~~~~kvlIFs~~~~~~~~l~~~L~~~~-----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a 184 (271)
T 1z5z_A 110 DEGDKIAIFTQFVDMGKIIRNIIEKEL-----NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSA 184 (271)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHHHHH-----CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTC
T ss_pred hCCCeEEEEeccHHHHHHHHHHHHHhc-----CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccC
Confidence 367899999999999999999998741 25677899999999999999999877 555 78999999999999999
Q ss_pred eEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC---CeEEecCChhhh
Q psy6094 262 VYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK---RSETQQYPNDVL 318 (455)
Q Consensus 262 ~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~---G~c~~L~t~~~~ 318 (455)
++||+ ||++-+ .+.+.||.||++|.|. -.+|+|++...+
T Consensus 185 ~~VI~--------~d~~wn----------p~~~~Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 185 NRVIH--------FDRWWN----------PAVEDQATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp SEEEE--------CSCCSC----------TTTC--------------CCEEEEEEETTSH
T ss_pred CEEEE--------ECCCCC----------hhHHHHHHHhccccCCCCceEEEEEeeCCCH
Confidence 99998 544333 3445699999999765 456888886543
No 70
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.00 E-value=2.7e-10 Score=118.95 Aligned_cols=111 Identities=15% Similarity=0.020 Sum_probs=87.5
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCC-ce-EEEEeCCCCccCCCCCCe
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEG-VR-KIVLATNIAETSITIDDI 261 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g-~~-kVivaTniae~gitI~~V 261 (455)
..+..+|||+.....++.+.+.|.... ++.+..+||++++++|.++++.|.+| .. .+++||++++.|+|++++
T Consensus 339 ~~~~k~lvF~~~~~~~~~l~~~l~~~~-----~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~ 413 (500)
T 1z63_A 339 DEGDKIAIFTQFVDMGKIIRNIIEKEL-----NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSA 413 (500)
T ss_dssp TTTCCEEEECSCHHHHHHHHHHHHHHH-----TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTC
T ss_pred ccCCcEEEEEehHHHHHHHHHHHHHhh-----CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhC
Confidence 467899999999999999999998742 25677899999999999999999877 34 489999999999999999
Q ss_pred eEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC---CeEEecCChhh
Q psy6094 262 VYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK---RSETQQYPNDV 317 (455)
Q Consensus 262 ~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~---G~c~~L~t~~~ 317 (455)
++||. ||+.- +.+.+.||.||++|.|. ..+|+|++...
T Consensus 414 ~~vi~--------~d~~~----------~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 414 NRVIH--------FDRWW----------NPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp SEEEE--------SSCCS----------CC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred CEEEE--------eCCCC----------CcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 99998 44332 33456699999999776 35688877543
No 71
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.93 E-value=2.4e-09 Score=101.78 Aligned_cols=63 Identities=11% Similarity=0.034 Sum_probs=55.1
Q ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 28 VLDAAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
.....-...|++...++.+.+.++..+....+++|.++++.+.+++++++.|+||||||.++.
T Consensus 36 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 36 IVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CHHHHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCcccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 344455567888889999999999999999999999999999999999999999999996543
No 72
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.91 E-value=1.6e-09 Score=117.02 Aligned_cols=109 Identities=11% Similarity=0.054 Sum_probs=93.0
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCce---EEEEeCCCCccCCCCCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVR---KIVLATNIAETSITIDD 260 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~---kVivaTniae~gitI~~ 260 (455)
..+..+|||+.....++.+.+.|...+ +.+..+||++++++|.++++.|.+|.. .+++||++++.|||+++
T Consensus 414 ~~~~k~lIFs~~~~~~~~l~~~l~~~g------~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~ 487 (644)
T 1z3i_X 414 TTSDKVVLVSNYTQTLDLFEKLCRNRR------YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIG 487 (644)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHHT------CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTT
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHCC------CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCccccc
Confidence 457899999999999999999998764 678999999999999999999987754 58999999999999999
Q ss_pred eeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC---CeEEecCChh
Q psy6094 261 IVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK---RSETQQYPND 316 (455)
Q Consensus 261 V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~---G~c~~L~t~~ 316 (455)
+++||. ||+ |-+.+.+.||.||++|.|. ..+|+|++..
T Consensus 488 a~~Vi~--------~d~----------~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 488 ANRLVM--------FDP----------DWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp EEEEEE--------CSC----------CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred CCEEEE--------ECC----------CCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 999998 543 3456778899999999775 4788888754
No 73
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.80 E-value=2.3e-08 Score=93.17 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=43.7
Q ss_pred HhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCccc
Q psy6094 40 KLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPL 87 (455)
Q Consensus 40 ~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTt 87 (455)
...++...+.+...+....+++|.++++.+.++++++++|+||||||.
T Consensus 25 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~ 72 (228)
T 3iuy_A 25 FQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTL 72 (228)
T ss_dssp HTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHH
T ss_pred hccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHH
Confidence 567788888888888888999999999999999999999999999995
No 74
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.78 E-value=9.7e-09 Score=100.39 Aligned_cols=114 Identities=12% Similarity=0.099 Sum_probs=81.8
Q ss_pred HHHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcC--CeEEEEcCCCCCcccchh-hhhh------------------
Q psy6094 36 EMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNN--QITVISGETGSGPPLHLD-FITL------------------ 94 (455)
Q Consensus 36 ~~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~--~~vii~~~TGSGKTtqlp-~ll~------------------ 94 (455)
.|.+..+++...+.+...+....+++|.++++.+.++ ++++++|+||||||..+. .++.
T Consensus 93 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~Ptr 172 (300)
T 3fmo_B 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 172 (300)
T ss_dssp CSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcH
Confidence 3566778888899998899999999999999999987 999999999999995422 2221
Q ss_pred -----------hhc--------------------------CCCCChHHHHHhc-cCC--CCcCcc------hHHHHH---
Q psy6094 95 -----------KRS--------------------------ETQQYPNDVLNML-KDP--ELEGVN------NDVIFS--- 125 (455)
Q Consensus 95 -----------e~~--------------------------~~vg~p~~ll~~l-~d~--~L~~~~------~D~ll~--- 125 (455)
..+ ..||+|.+|++.+ ... .+..++ +|.++.
T Consensus 173 eLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~ 252 (300)
T 3fmo_B 173 ELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 252 (300)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccC
Confidence 000 1122577788877 322 344444 676664
Q ss_pred ---HHHHHHHhcCCCCeEEEEccCCCC
Q psy6094 126 ---LLQHICTTQRPGAILVYCTYTFMG 149 (455)
Q Consensus 126 ---~lk~il~~~~~~~k~ilmSAT~~g 149 (455)
.+..++...+++.|+++||||++.
T Consensus 253 ~~~~~~~i~~~~~~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 253 HQDQSIRIQRMLPRNCQMLLFSATFED 279 (300)
T ss_dssp HHHHHHHHHTTSCTTCEEEEEESCCCH
T ss_pred cHHHHHHHHHhCCCCCEEEEEeccCCH
Confidence 255566456788999999999954
No 75
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.78 E-value=1.9e-08 Score=93.34 Aligned_cols=52 Identities=4% Similarity=-0.055 Sum_probs=45.7
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH 88 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq 88 (455)
|.+...++.+.+.+...+....+++|.++++.+.+++++++.++||||||..
T Consensus 16 f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 16 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp GGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred hhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHH
Confidence 4455677888888888888889999999999999999999999999999965
No 76
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.78 E-value=1.6e-08 Score=92.46 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=46.0
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH 88 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq 88 (455)
|.+...++...+.++..+....+++|.++++.+.+++++++.++||||||..
T Consensus 3 f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLA 54 (207)
T ss_dssp GGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHH
Confidence 4455677888888888888899999999999999999999999999999964
No 77
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.77 E-value=1.5e-08 Score=94.91 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=47.2
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH 88 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq 88 (455)
|.+...++...+.++.++....+++|.++++.+.+++++++.++||||||++
T Consensus 27 f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~ 78 (236)
T 2pl3_A 27 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLA 78 (236)
T ss_dssp GGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHH
Confidence 5566688888888999999999999999999999999999999999999964
No 78
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.76 E-value=1.2e-08 Score=96.14 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=43.7
Q ss_pred HHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc
Q psy6094 38 IRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH 88 (455)
Q Consensus 38 ~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq 88 (455)
.+...++...+.+...+....+++|.++++.+.++++++++|+||||||..
T Consensus 32 ~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 32 YEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp TTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred hhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 345567777777877788878999999999999999999999999999944
No 79
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.75 E-value=1.7e-08 Score=92.32 Aligned_cols=52 Identities=6% Similarity=-0.011 Sum_probs=46.1
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH 88 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq 88 (455)
|++...++...+.+...+....+++|.++++.+.+++++++.++||||||..
T Consensus 5 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~ 56 (206)
T 1vec_A 5 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGA 56 (206)
T ss_dssp GGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHH
T ss_pred hhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHH
Confidence 5566678888888888888889999999999999999999999999999943
No 80
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.74 E-value=1.4e-08 Score=94.17 Aligned_cols=52 Identities=12% Similarity=0.106 Sum_probs=46.0
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH 88 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq 88 (455)
|.+...++...+.++..+....+++|.++++.+.+++++++.++||||||..
T Consensus 6 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 6 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHA 57 (219)
T ss_dssp GGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHH
T ss_pred HhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHH
Confidence 4455677888888888888889999999999999999999999999999964
No 81
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.74 E-value=8.4e-09 Score=114.06 Aligned_cols=111 Identities=15% Similarity=0.089 Sum_probs=93.4
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCc---eEEEEeCCCCccCCCCCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGV---RKIVLATNIAETSITIDD 260 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~---~kVivaTniae~gitI~~ 260 (455)
..+..+|||+.....++.+.+.|...+ +.+..+||+++..+|.++++.|..|. ..+|+||.+++.||+++.
T Consensus 570 ~~g~kvLIFsq~~~~ld~L~~~L~~~g------~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~ 643 (800)
T 3mwy_W 570 KDGHRVLIFSQMVRMLDILGDYLSIKG------INFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT 643 (800)
T ss_dssp TTTCCEEEEESCHHHHHHHHHHHHHHT------CCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTT
T ss_pred hCCCeEEEEechHHHHHHHHHHHHhCC------CCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccc
Confidence 456799999999999999999998774 77889999999999999999998754 359999999999999999
Q ss_pred eeEEEeCCCCcccccccCCCcccccccccchhhHHhhhcccCCCCC---CeEEecCChhhh
Q psy6094 261 IVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLK---RSETQQYPNDVL 318 (455)
Q Consensus 261 V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRaGR~~~---G~c~~L~t~~~~ 318 (455)
+++||. ||+. -+.+...||.||++|.|. ..+|+|+++..+
T Consensus 644 a~~VI~--------~D~~----------wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~Ti 686 (800)
T 3mwy_W 644 ADTVVI--------FDSD----------WNPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 686 (800)
T ss_dssp CCEEEE--------SSCC----------SCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSH
T ss_pred cceEEE--------ecCC----------CChhhHHHHHHHHHhcCCCceEEEEEEecCCCH
Confidence 999998 5433 244667799999999654 678899885543
No 82
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.71 E-value=2e-08 Score=94.47 Aligned_cols=53 Identities=6% Similarity=-0.038 Sum_probs=46.0
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccch
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtql 89 (455)
|.+...++...+.+...+.-..+++|.++++.+.+++++++.|+||||||..+
T Consensus 32 f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 32 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATF 84 (237)
T ss_dssp GGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 55666788888888888887789999999999999999999999999999553
No 83
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.70 E-value=1.3e-08 Score=94.14 Aligned_cols=52 Identities=6% Similarity=-0.042 Sum_probs=44.7
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH 88 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq 88 (455)
|++...++...+.+...+.-..+++|.++++.+.+++++++.++||||||..
T Consensus 16 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~ 67 (220)
T 1t6n_A 16 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAV 67 (220)
T ss_dssp STTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhh
Confidence 4556677888888877777778999999999999999999999999999954
No 84
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.68 E-value=4.4e-08 Score=91.54 Aligned_cols=52 Identities=17% Similarity=0.105 Sum_probs=46.4
Q ss_pred HHHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc
Q psy6094 37 MIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH 88 (455)
Q Consensus 37 ~~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq 88 (455)
|.+...++...+.++..+.-..+++|.++++.+.+++++++.++||||||.+
T Consensus 26 f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 26 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCV 77 (230)
T ss_dssp GGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 5666788888888888888778999999999999999999999999999955
No 85
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.68 E-value=3.1e-08 Score=94.71 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=42.9
Q ss_pred cCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc
Q psy6094 42 QSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH 88 (455)
Q Consensus 42 ~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq 88 (455)
.++...+.+...+....+++|.++++.+.++++++++|+||||||..
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLA 107 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHH
Confidence 67888888888888889999999999999999999999999999953
No 86
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.62 E-value=1.7e-07 Score=88.14 Aligned_cols=51 Identities=14% Similarity=0.078 Sum_probs=45.7
Q ss_pred HHHhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc
Q psy6094 38 IRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH 88 (455)
Q Consensus 38 ~~~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq 88 (455)
.....++...+.+...+....+++|.++++.+.+++++++.|+||||||..
T Consensus 32 ~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 32 QEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 345688888888888888889999999999999999999999999999954
No 87
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.36 E-value=1.8e-07 Score=88.60 Aligned_cols=49 Identities=8% Similarity=0.066 Sum_probs=39.0
Q ss_pred HhcCHHHHHHHHHHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc
Q psy6094 40 KLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLH 88 (455)
Q Consensus 40 ~~~~~~~~~~l~~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtq 88 (455)
...++...+.+...+.-..+++|.++++.+.+++++++.++||||||..
T Consensus 28 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~ 76 (253)
T 1wrb_A 28 LKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAA 76 (253)
T ss_dssp GSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHH
Confidence 3344444455555666778999999999999999999999999999953
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.92 E-value=4.9e-06 Score=87.79 Aligned_cols=116 Identities=14% Similarity=0.118 Sum_probs=67.7
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEE--eCCCCccCCCCCC-
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVL--ATNIAETSITIDD- 260 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kViv--aTniae~gitI~~- 260 (455)
..+|.+|||+|+...++.+++.+... . +..++.. .++.++++.|+.|. .|++ +|+.+..|||+||
T Consensus 382 ~~~g~~lvff~S~~~~~~v~~~l~~~--------~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~ 449 (540)
T 2vl7_A 382 NSSKSVLVFFPSYEMLESVRIHLSGI--------P-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREK 449 (540)
T ss_dssp TCSSEEEEEESCHHHHHHHHTTCTTS--------C-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC-------------
T ss_pred hCCCCEEEEeCCHHHHHHHHHHhccC--------c-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCC
Confidence 56889999999999999998777542 1 2335443 35666777776653 5777 8999999999998
Q ss_pred ---eeEEEeCCCCcccccccCC-------------CcccccccccchhhHHhhhcccCCCCC--CeEEec
Q psy6094 261 ---IVYVVDCGKTKMSNFDVKD-------------NIATLKPEWISLANAKQRRGRAGRTLK--RSETQQ 312 (455)
Q Consensus 261 ---V~~VID~g~~k~~~yd~~~-------------~~~~l~~~~iSka~~~QR~GRaGR~~~--G~c~~L 312 (455)
++.||..|+|.....|+.. +...+. .+..--...|-.||+-|... |..+-+
T Consensus 450 ~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Q~~GR~iR~~~D~g~v~ll 518 (540)
T 2vl7_A 450 ENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSII-HDLTAIVIKQTIGRAFRDPNDYVKIYLC 518 (540)
T ss_dssp --CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHHHHHHHHCCSTTCCCEEEEE
T ss_pred cccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHH-HHHHHHHHHHHhCCcccCCCccEEEEEE
Confidence 8999999999655433321 111011 11124567899999999654 765544
No 89
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.78 E-value=1.8e-05 Score=72.16 Aligned_cols=39 Identities=18% Similarity=0.077 Sum_probs=34.2
Q ss_pred HHccCCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 52 ARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 52 ~R~~lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
.....+.+++|.++++.+.+++++++.++||||||+.+.
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~ 66 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAV 66 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHH
Confidence 345678999999999999999999999999999996544
No 90
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=96.31 E-value=0.012 Score=64.64 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCCCCcccc
Q psy6094 57 PSYQMRDAVLDMVRNNQITVISGETGSGPPLH 88 (455)
Q Consensus 57 P~~~~q~~il~~i~~~~~vii~~~TGSGKTtq 88 (455)
-.+..|...+..+..|+ |+.+.||||||..
T Consensus 79 ~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLv 108 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLV 108 (997)
T ss_dssp CCCHHHHHHHHHHHTTS--EEECCSTHHHHHH
T ss_pred CCcHHHHhhcccccCCc--eeeccCCCchHHH
Confidence 55888999999999998 8999999999943
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.34 E-value=0.0073 Score=56.25 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEcCCCCCcccch
Q psy6094 56 LPSYQMRDAVLDMVRNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 56 lP~~~~q~~il~~i~~~~~vii~~~TGSGKTtql 89 (455)
....++|.+.++.+.+++.+++.|+||+|||.+.
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a 125 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVA 125 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHH
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHH
Confidence 3568899999999999989999999999999443
No 92
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=95.27 E-value=0.0058 Score=58.23 Aligned_cols=31 Identities=10% Similarity=0.021 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHHcCCeEEEEcCCCCCcc
Q psy6094 56 LPSYQMRDAVLDMVRNNQITVISGETGSGPP 86 (455)
Q Consensus 56 lP~~~~q~~il~~i~~~~~vii~~~TGSGKT 86 (455)
+..+++|.+.++.+.++...++.++||||||
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT 142 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRS 142 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHH
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcH
Confidence 5788999999998887788899999999999
No 93
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.50 E-value=0.023 Score=51.87 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 57 PSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 57 P~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
|-.--+..+++.+..|+.+.|.|+.||||||.+-
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHH
Confidence 3333456788889999999999999999997764
No 94
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=94.08 E-value=0.028 Score=59.07 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=24.4
Q ss_pred CCHHHHHHHHH----HHHcCCeEEEEcCCCCCcc
Q psy6094 57 PSYQMRDAVLD----MVRNNQITVISGETGSGPP 86 (455)
Q Consensus 57 P~~~~q~~il~----~i~~~~~vii~~~TGSGKT 86 (455)
..++.|.++++ ++.+++++++.++||||||
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT 36 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKT 36 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHH
Confidence 35667777655 5668999999999999999
No 95
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=93.82 E-value=0.059 Score=57.46 Aligned_cols=117 Identities=9% Similarity=0.064 Sum_probs=71.6
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeC--CCCccCCCCCC-
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLAT--NIAETSITIDD- 260 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaT--niae~gitI~~- 260 (455)
..+|.+|||+|+....+.+++.+. .. ... ...+++..++..+++.|. +..-|++++ ....-|||+++
T Consensus 446 ~~~g~~lvlF~Sy~~l~~v~~~l~-~~-----~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~ 515 (620)
T 4a15_A 446 KVKKNTIVYFPSYSLMDRVENRVS-FE-----HMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGN 515 (620)
T ss_dssp HHCSCEEEEESCHHHHHHHTSSCC-SC-----CEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------C
T ss_pred hCCCCEEEEeCCHHHHHHHHHHHH-hc-----chh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCC
Confidence 568889999999999999887776 11 122 445555667788888887 788899997 47778999985
Q ss_pred -eeEEEeCCCCcccccccC-------------CCcccccccccchhhHHhhhcccCCCCC--CeEEec
Q psy6094 261 -IVYVVDCGKTKMSNFDVK-------------DNIATLKPEWISLANAKQRRGRAGRTLK--RSETQQ 312 (455)
Q Consensus 261 -V~~VID~g~~k~~~yd~~-------------~~~~~l~~~~iSka~~~QR~GRaGR~~~--G~c~~L 312 (455)
.+.||-.|+|-... ||. .+...-...| .--...|=.||+=|... |..+-+
T Consensus 516 ~l~~viI~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 516 ELEMIILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp CCCEEEESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred ceEEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceEEEEEE
Confidence 56888889884432 221 1111001223 33456799999988554 766544
No 96
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.54 E-value=0.031 Score=59.45 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCCcccchhh
Q psy6094 60 QMRDAVLDMVRNNQITVISGETGSGPPLHLDF 91 (455)
Q Consensus 60 ~~q~~il~~i~~~~~vii~~~TGSGKTtqlp~ 91 (455)
..|.+.+..+..+++++|+|++||||||.+.+
T Consensus 152 ~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ 183 (608)
T 1w36_D 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAK 183 (608)
T ss_dssp CHHHHHHHHHHTBSEEEEECCTTSTHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHH
Confidence 45888888888999999999999999987663
No 97
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.38 E-value=0.043 Score=48.17 Aligned_cols=20 Identities=15% Similarity=0.131 Sum_probs=17.6
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.++.+++.|++||||||.+-
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57899999999999997765
No 98
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.30 E-value=0.025 Score=50.01 Aligned_cols=20 Identities=20% Similarity=0.244 Sum_probs=17.1
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.++.++++|++||||||.+-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57889999999999997653
No 99
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=93.30 E-value=0.044 Score=58.44 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.1
Q ss_pred HHHHHHHcCCeEEEEcCCCCCcc
Q psy6094 64 AVLDMVRNNQITVISGETGSGPP 86 (455)
Q Consensus 64 ~il~~i~~~~~vii~~~TGSGKT 86 (455)
++.+++.+++++++.|+||||||
T Consensus 14 ~v~~~l~~~~~~~~~apTGtGKT 36 (620)
T 4a15_A 14 FLRSSLQKSYGVALESPTGSGKT 36 (620)
T ss_dssp HHHHHHHHSSEEEEECCTTSCHH
T ss_pred HHHHHHHcCCCEEEECCCCCCHH
Confidence 34467789999999999999999
No 100
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.95 E-value=0.03 Score=55.62 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=20.3
Q ss_pred HHHcCCeEEEEcCCCCCcccchh
Q psy6094 68 MVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 68 ~i~~~~~vii~~~TGSGKTtqlp 90 (455)
.+..|..++|+|+|||||||.+-
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMK 193 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHHHH
Confidence 47789999999999999997765
No 101
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.89 E-value=0.027 Score=50.37 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=18.3
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..|.++.+.|++||||||.+-
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHH
Confidence 468899999999999998765
No 102
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.87 E-value=0.021 Score=54.09 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..+..+.|+|+|||||||.+-
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHH
Confidence 5688899999999999998764
No 103
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.76 E-value=0.033 Score=50.34 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=18.3
Q ss_pred HHHcCCeEEEEcCCCCCcccchh
Q psy6094 68 MVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 68 ~i~~~~~vii~~~TGSGKTtqlp 90 (455)
.+..|+++.+.|++||||||.+-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHH
Confidence 57899999999999999998764
No 104
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.71 E-value=0.043 Score=57.10 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.6
Q ss_pred HHHHcCCeEEEEcCCCCCcccchh
Q psy6094 67 DMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 67 ~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
-.+..+.+++|+|+|||||||.+-
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLN 278 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHH
T ss_pred HHHhCCCEEEEECCCCCCHHHHHH
Confidence 346789999999999999997765
No 105
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=92.71 E-value=0.045 Score=57.37 Aligned_cols=30 Identities=13% Similarity=0.293 Sum_probs=23.1
Q ss_pred CCHHHHHHHH----HHHHcCCeEEEEcCCCCCcc
Q psy6094 57 PSYQMRDAVL----DMVRNNQITVISGETGSGPP 86 (455)
Q Consensus 57 P~~~~q~~il----~~i~~~~~vii~~~TGSGKT 86 (455)
+.++.|.+++ +++.+++++++.++||||||
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT 40 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKT 40 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHH
Confidence 4455677654 55678999999999999999
No 106
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.67 E-value=0.031 Score=50.05 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=18.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..+..+++.|++||||||++-
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999997764
No 107
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.39 E-value=0.022 Score=50.06 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.4
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..+..+.+.|++||||||.+-
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 467889999999999998875
No 108
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.27 E-value=0.04 Score=54.03 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.1
Q ss_pred HHHcCCeEEEEcCCCCCcccchh
Q psy6094 68 MVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 68 ~i~~~~~vii~~~TGSGKTtqlp 90 (455)
.+..+.++.|.|+|||||||.+-
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~ 189 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIK 189 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHH
T ss_pred hccCCCEEEEECCCCCCHHHHHH
Confidence 46789999999999999998765
No 109
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.20 E-value=0.039 Score=50.49 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=17.6
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|++||||||.+-
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIK 41 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHH
Confidence 5678999999999999996653
No 110
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.13 E-value=0.025 Score=50.00 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.1
Q ss_pred HHcCCeEEEEcCCCCCcccchhhh
Q psy6094 69 VRNNQITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp~l 92 (455)
+..+..+++.|+.||||||.+-.|
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~L 29 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEAL 29 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHH
Confidence 567889999999999999876544
No 111
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.07 E-value=0.039 Score=49.67 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=16.0
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.++.++++|++||||||.+-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57789999999999997664
No 112
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.92 E-value=0.048 Score=49.38 Aligned_cols=20 Identities=25% Similarity=0.410 Sum_probs=17.4
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.+..+++.|++||||||.+-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 57899999999999997654
No 113
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.81 E-value=0.083 Score=56.55 Aligned_cols=32 Identities=13% Similarity=0.297 Sum_probs=24.0
Q ss_pred HHHHHHHHHHH-HcCCeEEEEcCCCCCcccchh
Q psy6094 59 YQMRDAVLDMV-RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 59 ~~~q~~il~~i-~~~~~vii~~~TGSGKTtqlp 90 (455)
-..|.+++..+ .+....+|+||+|||||+.+.
T Consensus 191 N~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 191 DTSQKEAVLFALSQKELAIIHGPPGTGKTTTVV 223 (646)
T ss_dssp CHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHHhcCCCceEEECCCCCCHHHHHH
Confidence 34566666554 456799999999999997665
No 114
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.78 E-value=0.04 Score=50.62 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=15.9
Q ss_pred HHcCCeEEEEcCCCCCcccchhhh
Q psy6094 69 VRNNQITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp~l 92 (455)
+..|.++.+.|++||||||.+-.|
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L 47 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKL 47 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHH
Confidence 457889999999999999877544
No 115
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.67 E-value=0.072 Score=45.11 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=17.7
Q ss_pred HHHcCCeEEEEcCCCCCcccch
Q psy6094 68 MVRNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 68 ~i~~~~~vii~~~TGSGKTtql 89 (455)
+...+..+++.|++|||||+..
T Consensus 23 ~~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHHH
T ss_pred HhCCCCcEEEECCCCccHHHHH
Confidence 3456778999999999999544
No 116
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.64 E-value=0.073 Score=45.17 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=17.1
Q ss_pred HHcCCeEEEEcCCCCCcccch
Q psy6094 69 VRNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtql 89 (455)
...+..+++.|++|||||+..
T Consensus 21 a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHH
Confidence 456778999999999999443
No 117
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.50 E-value=0.052 Score=49.92 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=27.5
Q ss_pred HHcCCeEEEEcCCCCCcccchhhhhhhhcCCCCChHHHHHh
Q psy6094 69 VRNNQITVISGETGSGPPLHLDFITLKRSETQQYPNDVLNM 109 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp~ll~e~~~~vg~p~~ll~~ 109 (455)
+...+++++.|++||||+||...|.+..|...=..++++|.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~ 66 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRA 66 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHH
Confidence 44567899999999999999876665444321124445543
No 118
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.39 E-value=0.054 Score=48.00 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=16.3
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
++++++.|++||||||.+-
T Consensus 1 ~~ii~l~GpsGaGKsTl~~ 19 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCCEEEESSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999998765
No 119
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.20 E-value=0.051 Score=53.83 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=17.8
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..+..++|+|+|||||||.+-
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 456689999999999998775
No 120
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.00 E-value=0.069 Score=48.29 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=17.3
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.++.++++|++|+||||.+-
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHH
Confidence 68899999999999996553
No 121
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.98 E-value=0.13 Score=45.93 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.8
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
+.+++.|++|+|||+.+-
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 789999999999996654
No 122
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.96 E-value=0.12 Score=44.82 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=19.2
Q ss_pred HHHHHHHc--CCeEEEEcCCCCCcccchh
Q psy6094 64 AVLDMVRN--NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 64 ~il~~i~~--~~~vii~~~TGSGKTtqlp 90 (455)
++...+.. ...+++.|++|+|||+.+-
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 34444433 4679999999999996654
No 123
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.83 E-value=0.073 Score=47.67 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=19.6
Q ss_pred HHcCCeEEEEcCCCCCcccchhhhhh
Q psy6094 69 VRNNQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
+..++.+++.|++||||||..-.+..
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34678999999999999987654443
No 124
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.79 E-value=0.13 Score=46.28 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=19.4
Q ss_pred HHHHHHHcCC---eEEEEcCCCCCcccchh
Q psy6094 64 AVLDMVRNNQ---ITVISGETGSGPPLHLD 90 (455)
Q Consensus 64 ~il~~i~~~~---~vii~~~TGSGKTtqlp 90 (455)
.+...+..++ .+++.|++|+||||.+-
T Consensus 34 ~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 34 ALANGLSLGRIHHAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp HHHHHHHHTCCCSEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 3344445454 79999999999996654
No 125
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.76 E-value=0.074 Score=46.71 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=19.4
Q ss_pred cCCeEEEEcCCCCCcccchhhhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFITLK 95 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll~e 95 (455)
.+..+++.|+.||||||+.-.|.+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999887655443
No 126
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.76 E-value=0.093 Score=44.98 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=17.4
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.++.+++.|++||||||.+-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 68899999999999996654
No 127
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.69 E-value=0.05 Score=54.20 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..+..++|+|+|||||||.+-
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHH
Confidence 4678899999999999997764
No 128
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.65 E-value=0.11 Score=54.72 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 58 SYQMRDAVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 58 ~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
....|.+++..+.++++++|+|++||||||.+-
T Consensus 190 L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 190 LSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH
T ss_pred CCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH
Confidence 457899999999999999999999999998776
No 129
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.63 E-value=0.077 Score=48.72 Aligned_cols=21 Identities=14% Similarity=0.411 Sum_probs=17.1
Q ss_pred HHcCCeEEEEcCCCCCcccch
Q psy6094 69 VRNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtql 89 (455)
...|+.++|+||.||||||.+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 467899999999999999655
No 130
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.62 E-value=0.053 Score=50.35 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|++||||||.+-
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~ 49 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLN 49 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHH
Confidence 3578899999999999998876
No 131
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.56 E-value=0.12 Score=52.26 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=17.6
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..+..++|+|+|||||||.+-
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHH
Confidence 356689999999999997765
No 132
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.20 E-value=0.099 Score=45.29 Aligned_cols=19 Identities=16% Similarity=0.436 Sum_probs=16.0
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
...+++.|++|+|||+.+-
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 5679999999999996554
No 133
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.17 E-value=0.09 Score=47.09 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=19.3
Q ss_pred HcCCeEEEEcCCCCCcccchhhhh
Q psy6094 70 RNNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp~ll 93 (455)
..+.++++.|+.||||||.+-.|.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999998876443
No 134
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.15 E-value=0.082 Score=47.52 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=17.7
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..+..++++|++||||||+.-
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 457789999999999997654
No 135
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.03 E-value=0.097 Score=47.59 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCcccchhhhhhhhc
Q psy6094 74 ITVISGETGSGPPLHLDFITLKRS 97 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll~e~~ 97 (455)
++++.|++||||+||...|.+..|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478899999999999876665443
No 136
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.98 E-value=0.086 Score=45.27 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=16.5
Q ss_pred CeEEEEcCCCCCcccchhhh
Q psy6094 73 QITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~l 92 (455)
.++++.|++||||||+.-.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36889999999999877544
No 137
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=89.97 E-value=0.089 Score=47.48 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=17.5
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..+..+.|.|++||||||.+-
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~ 40 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSN 40 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 356789999999999997764
No 138
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.86 E-value=0.16 Score=54.16 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 59 YQMRDAVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 59 ~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
-..|.+++..+..+..++|+|++|||||+.+.
T Consensus 182 n~~Q~~av~~~l~~~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 182 NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp CHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH
Confidence 46788888888888899999999999997665
No 139
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.85 E-value=0.067 Score=49.71 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|++||||||.+-
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~ 49 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLS 49 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 3578899999999999998765
No 140
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.80 E-value=0.067 Score=49.22 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.3
Q ss_pred HHHcCCeEEEEcCCCCCcccchh
Q psy6094 68 MVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 68 ~i~~~~~vii~~~TGSGKTtqlp 90 (455)
-+..|.++.+.|++||||||.+-
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHH
Confidence 45689999999999999998876
No 141
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.67 E-value=0.099 Score=47.76 Aligned_cols=24 Identities=33% Similarity=0.246 Sum_probs=17.8
Q ss_pred HcCCeEEEEcCCCCCcccchhhhh
Q psy6094 70 RNNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp~ll 93 (455)
.....+++.|.+||||||+.-.|.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999998765443
No 142
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.48 E-value=0.07 Score=49.12 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|.++.|.|+.||||||.+-
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~ 48 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLY 48 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3578899999999999998865
No 143
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.42 E-value=0.1 Score=45.21 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=16.1
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
+.++++.|+.||||||..-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999997654
No 144
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.19 E-value=0.15 Score=45.03 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=20.7
Q ss_pred HHHcCCeEEEEcCCCCCcccchhhhhh
Q psy6094 68 MVRNNQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 68 ~i~~~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
.+.....+++.|.+||||||+.-.+.+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 345577899999999999987654443
No 145
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.18 E-value=0.078 Score=50.55 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|.++.|.|++||||||.+-
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~ 52 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQ 52 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3568899999999999998876
No 146
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=88.99 E-value=0.16 Score=44.10 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=18.2
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..|+++.+.|+.||||||.+-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr 51 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTR 51 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 678899999999999997654
No 147
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.98 E-value=0.076 Score=48.64 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=18.7
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+++.|.|+.||||||.+-
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk 53 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLK 53 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3578889999999999997764
No 148
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=88.90 E-value=0.12 Score=44.39 Aligned_cols=21 Identities=5% Similarity=0.021 Sum_probs=16.8
Q ss_pred eEEEEcCCCCCcccchhhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll~ 94 (455)
.+++.|+.||||||+.-.+.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999987654443
No 149
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=88.89 E-value=0.1 Score=45.41 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=18.4
Q ss_pred cCCeEEEEcCCCCCcccchhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll 93 (455)
.+.++++.|+.||||||+.-.+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 35689999999999998765443
No 150
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.88 E-value=0.22 Score=44.16 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=13.8
Q ss_pred eEEEEcCCCCCcccch
Q psy6094 74 ITVISGETGSGPPLHL 89 (455)
Q Consensus 74 ~vii~~~TGSGKTtql 89 (455)
.+++.|++|+|||+.+
T Consensus 40 ~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 40 HLLFSGPPGTGKTATA 55 (226)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5999999999999554
No 151
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.87 E-value=0.086 Score=49.60 Aligned_cols=22 Identities=32% Similarity=0.592 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|.++.|.|+.||||||.+-
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk 51 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLIN 51 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHH
T ss_pred EeCCCEEEEECCCCCCHHHHHH
Confidence 3578899999999999998875
No 152
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.86 E-value=0.086 Score=49.32 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~ 53 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTK 53 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3478899999999999998875
No 153
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.86 E-value=0.13 Score=45.08 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=18.2
Q ss_pred CCeEEEEcCCCCCcccchhhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
.+.+++.|++||||||..-.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999987654443
No 154
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.81 E-value=0.089 Score=49.69 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|.++.|.|+.||||||.+-
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk 50 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLR 50 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3578899999999999998865
No 155
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.81 E-value=0.087 Score=48.65 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=18.9
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~ 52 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLM 52 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3478899999999999998765
No 156
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.69 E-value=0.092 Score=49.53 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|++||||||.+-
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~ 64 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAK 64 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 3578899999999999998875
No 157
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.67 E-value=0.091 Score=48.90 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|.++.|.|+.||||||.+-
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~ 50 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLS 50 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3578899999999999998875
No 158
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.62 E-value=0.14 Score=45.56 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=19.4
Q ss_pred cCCeEEEEcCCCCCcccchhhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
.+..+++.|..||||||+.-.+.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999998764443
No 159
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.59 E-value=0.13 Score=44.70 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=17.6
Q ss_pred CeEEEEcCCCCCcccchhhhhh
Q psy6094 73 QITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~ll~ 94 (455)
..+++.|.+||||||+.-.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3688999999999988765543
No 160
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.56 E-value=0.26 Score=44.61 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=16.1
Q ss_pred cCCeEEEEcCCCCCcccch
Q psy6094 71 NNQITVISGETGSGPPLHL 89 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtql 89 (455)
.++.+++.|++||||||.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999544
No 161
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.53 E-value=0.08 Score=49.34 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=18.9
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|++||||||.+-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~ 46 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFS 46 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3578889999999999998765
No 162
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.47 E-value=0.15 Score=44.89 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=19.7
Q ss_pred HHcCCeEEEEcCCCCCcccchhhhh
Q psy6094 69 VRNNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp~ll 93 (455)
...+..+++.|..||||||+.-.+.
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999998765443
No 163
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.47 E-value=0.094 Score=49.68 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~ 55 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLR 55 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHH
Confidence 3578899999999999998875
No 164
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.43 E-value=0.078 Score=48.08 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..++++.|.|++||||||.+-
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999998866
No 165
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.43 E-value=0.15 Score=44.30 Aligned_cols=22 Identities=9% Similarity=0.347 Sum_probs=17.3
Q ss_pred CCeEEEEcCCCCCcccchhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll 93 (455)
+..++++|..||||||..-.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5679999999999997654433
No 166
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=88.42 E-value=0.12 Score=46.45 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=16.2
Q ss_pred HcCCeEEEEcCCCCCcccch
Q psy6094 70 RNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtql 89 (455)
..+.++.|.|++||||||.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHH
Confidence 45678889999999999665
No 167
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.38 E-value=0.1 Score=45.74 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=18.7
Q ss_pred cCCeEEEEcCCCCCcccchhhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
.+..+++.|..||||||+.-.+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999988754443
No 168
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.34 E-value=0.098 Score=48.98 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+++.|.|+.||||||.+-
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk 47 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGK 47 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 3578899999999999998876
No 169
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.32 E-value=0.1 Score=49.20 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+++.|.|+.||||||.+-
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk 59 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLR 59 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHH
T ss_pred EcCCcEEEEECCCCCCHHHHHH
Confidence 3578899999999999998865
No 170
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.29 E-value=0.1 Score=49.40 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+++.|.|+.||||||.+-
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk 68 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLR 68 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHHHH
Confidence 3578899999999999998875
No 171
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=88.27 E-value=0.14 Score=44.16 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=17.2
Q ss_pred CCeEEEEcCCCCCcccchhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll 93 (455)
-|++++.|..||||||+.-.|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 3789999999999997664443
No 172
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.20 E-value=0.1 Score=49.40 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+++.|.|+.||||||.+-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk 64 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSA 64 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999998876
No 173
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=88.12 E-value=0.11 Score=45.86 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=17.6
Q ss_pred CCeEEEEcCCCCCcccchhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll 93 (455)
+.++++.|++||||||.+-.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHh
Confidence 3578899999999998876443
No 174
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.10 E-value=0.13 Score=49.98 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=16.0
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
+.+++|+|||||||||..-
T Consensus 3 ~~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHH
Confidence 4578999999999997654
No 175
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.05 E-value=0.11 Score=49.40 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+++.|.|+.||||||.+-
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk 63 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAA 63 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 4578999999999999998875
No 176
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.00 E-value=0.12 Score=50.00 Aligned_cols=21 Identities=10% Similarity=0.245 Sum_probs=18.2
Q ss_pred HHcCCeEEEEcCCCCCcccch
Q psy6094 69 VRNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtql 89 (455)
|..|+.+.|.|++||||||.+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHH
Confidence 457899999999999999665
No 177
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.00 E-value=0.15 Score=44.60 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=19.0
Q ss_pred HcCCeEEEEcCCCCCcccchhhhh
Q psy6094 70 RNNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp~ll 93 (455)
....++++.|.+||||||+.-.+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 356789999999999998765443
No 178
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.95 E-value=0.11 Score=49.15 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=18.9
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|.++.|.|+.||||||.+-
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~ 51 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQ 51 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHH
Confidence 3578899999999999998765
No 179
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=87.87 E-value=0.14 Score=45.12 Aligned_cols=27 Identities=7% Similarity=0.204 Sum_probs=20.3
Q ss_pred cCCeEEEEcCCCCCcccchhhhhhhhc
Q psy6094 71 NNQITVISGETGSGPPLHLDFITLKRS 97 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll~e~~ 97 (455)
.+..+++.|..||||||+.-.+.+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356789999999999998765544433
No 180
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=87.71 E-value=0.14 Score=44.67 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=18.1
Q ss_pred cCCeEEEEcCCCCCcccchhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~l 92 (455)
.+..+++.|..||||||+.-.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L 25 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMAL 25 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4678899999999999876533
No 181
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.69 E-value=0.11 Score=48.72 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=18.9
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+++.|.|+.||||||.+-
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~ 49 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLD 49 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 3578899999999999998765
No 182
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.69 E-value=0.14 Score=46.95 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=20.1
Q ss_pred HcCCeEEEEcCCCCCcccchhhhhh
Q psy6094 70 RNNQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
..|..+.|.|+.||||||++-.|..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3567899999999999999874443
No 183
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.68 E-value=0.11 Score=49.48 Aligned_cols=22 Identities=18% Similarity=0.367 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|..+.|.|+.||||||.+-
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk 65 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLN 65 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHH
Confidence 3578899999999999998865
No 184
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.58 E-value=0.15 Score=44.85 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=17.4
Q ss_pred CCeEEEEcCCCCCcccchhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll 93 (455)
+..+++.|.+||||||+.-.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999998765443
No 185
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=87.57 E-value=0.27 Score=53.92 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 59 YQMRDAVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 59 ~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
-..|.+++..+..+.+++|+|++||||||.+.
T Consensus 358 n~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 358 NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp CHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH
Confidence 46788888888888999999999999997665
No 186
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.52 E-value=0.12 Score=48.51 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|..+.|.|+.||||||.+-
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk 44 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLA 44 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHH
Confidence 3578889999999999998875
No 187
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=87.48 E-value=0.18 Score=46.71 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=18.5
Q ss_pred cCCeEEEEcCCCCCcccchhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll 93 (455)
....++|.|+.||||||++-.|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999998875443
No 188
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=87.46 E-value=0.15 Score=45.54 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=17.8
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..+.++++.|+.||||||..-
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 467889999999999997654
No 189
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=87.46 E-value=0.17 Score=44.72 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=14.6
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+.+.|+.||||||.+-
T Consensus 2 ~i~l~G~nGsGKTTLl~ 18 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVK 18 (178)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998764
No 190
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.35 E-value=0.15 Score=49.93 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=15.6
Q ss_pred cCCeEEEEcCCCCCcccch
Q psy6094 71 NNQITVISGETGSGPPLHL 89 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtql 89 (455)
.+.+++|+|+|||||||..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3458999999999999654
No 191
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=87.22 E-value=0.24 Score=50.58 Aligned_cols=30 Identities=17% Similarity=0.388 Sum_probs=21.5
Q ss_pred HHHHHHHHH----HcCC-eEEEEcCCCCCcccchh
Q psy6094 61 MRDAVLDMV----RNNQ-ITVISGETGSGPPLHLD 90 (455)
Q Consensus 61 ~q~~il~~i----~~~~-~vii~~~TGSGKTtqlp 90 (455)
.|.+++..+ .+++ .++|.|+.||||||.+-
T Consensus 29 ~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK 63 (459)
T ss_dssp HHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH
Confidence 345555543 3334 99999999999998766
No 192
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=87.10 E-value=0.28 Score=53.83 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 59 YQMRDAVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 59 ~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
-..|.+++..+..+..++|.|++|||||+.+.
T Consensus 362 n~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 362 NSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp CHHHHHHHHHHTTCSEEEEECSTTSSHHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 37788999988888899999999999997665
No 193
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.05 E-value=0.21 Score=43.53 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=14.4
Q ss_pred cCCeEEEEcCCCCCcccchhhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
....+++.|..||||||+.-.+.+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999988654443
No 194
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=86.95 E-value=0.19 Score=45.48 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=17.6
Q ss_pred CCeEEEEcCCCCCcccchhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll 93 (455)
+.++.|.|++||||||..-.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999998775443
No 195
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=86.92 E-value=0.17 Score=44.25 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCcccchhhhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFITLK 95 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll~e 95 (455)
.+++.|..||||||+.-.|.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999987655443
No 196
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=86.89 E-value=0.17 Score=45.11 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=18.3
Q ss_pred cCCeEEEEcCCCCCcccchhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll 93 (455)
.+..+++.|..||||||+.-.|.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 35678999999999998875443
No 197
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.89 E-value=0.092 Score=50.86 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=18.9
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|++||||||.+-
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ 98 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILR 98 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHHHH
Confidence 3467889999999999998875
No 198
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=86.89 E-value=0.14 Score=46.38 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|.++++.|++||||||.+-
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHH
Confidence 4568899999999999998765
No 199
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=86.84 E-value=0.12 Score=46.28 Aligned_cols=22 Identities=32% Similarity=0.206 Sum_probs=18.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..+..+.|.|++||||||..-
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHH
Confidence 4567788999999999997654
No 200
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=86.82 E-value=0.17 Score=45.13 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=17.2
Q ss_pred CeEEEEcCCCCCcccchhhhh
Q psy6094 73 QITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~ll 93 (455)
.++++.|+.||||||+.-.|.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999998765443
No 201
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=86.78 E-value=0.18 Score=47.14 Aligned_cols=17 Identities=29% Similarity=0.217 Sum_probs=14.4
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
+++|.|+|||||||..-
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 58899999999997653
No 202
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=86.73 E-value=0.33 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=18.5
Q ss_pred CCeEEEEcCCCCCcccchhhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
+..++++|++||||||..-.+..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999988765543
No 203
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=86.64 E-value=0.21 Score=43.99 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=17.6
Q ss_pred cCCeEEEEcCCCCCcccchhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~l 92 (455)
.+..++++|..||||||..-.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999765433
No 204
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=86.59 E-value=0.2 Score=44.33 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=16.9
Q ss_pred eEEEEcCCCCCcccchhhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll~ 94 (455)
.+++.|..||||||+.-.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 578999999999988764443
No 205
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=86.50 E-value=0.21 Score=44.64 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=18.5
Q ss_pred cCCeEEEEcCCCCCcccchhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll 93 (455)
.+..+++.|..||||||+.-.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999998765443
No 206
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=86.50 E-value=0.2 Score=44.19 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=17.1
Q ss_pred eEEEEcCCCCCcccchhhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll~ 94 (455)
.+++.|..||||||+.-.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999874443
No 207
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=86.48 E-value=0.19 Score=44.25 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=18.8
Q ss_pred cCCeEEEEcCCCCCcccchhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll 93 (455)
.+..+++.|..||||||+.-.+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999998876443
No 208
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=86.45 E-value=0.21 Score=44.99 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchhh
Q psy6094 69 VRNNQITVISGETGSGPPLHLDF 91 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp~ 91 (455)
+..+.++++.|..||||||+.-.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHH
Confidence 45678899999999999987653
No 209
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.39 E-value=0.19 Score=43.84 Aligned_cols=17 Identities=41% Similarity=0.472 Sum_probs=15.3
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
..+|.|++||||||.+-
T Consensus 28 ~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGD 44 (182)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 78999999999998765
No 210
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.35 E-value=0.21 Score=45.22 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=15.5
Q ss_pred cCCeEEEEcCCCCCcccch
Q psy6094 71 NNQITVISGETGSGPPLHL 89 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtql 89 (455)
.++.++|.|+|||||||..
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3566899999999999654
No 211
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=86.34 E-value=0.29 Score=43.81 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=15.8
Q ss_pred cCCeEEEEcCCCCCcccch
Q psy6094 71 NNQITVISGETGSGPPLHL 89 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtql 89 (455)
.+.++.|.|++||||||.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SSEEEEEEECTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3568899999999999655
No 212
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=86.32 E-value=0.2 Score=44.69 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=14.7
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
+-+||+||+|+||||.+-
T Consensus 2 RpIVi~GPSG~GK~Tl~~ 19 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 458999999999996553
No 213
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=86.28 E-value=0.39 Score=46.31 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=16.2
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
++.+++.|++|+|||+.+-
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 6899999999999995543
No 214
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=86.28 E-value=0.21 Score=44.68 Aligned_cols=19 Identities=16% Similarity=0.375 Sum_probs=16.3
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
|+.+.+.|++||||||.+-
T Consensus 1 G~~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CCCEEEESCCSSCHHHHHH
T ss_pred CCEEEEECCCCChHHHHHH
Confidence 4578899999999998775
No 215
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.25 E-value=0.15 Score=48.91 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=18.3
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..|+.+.|.|+.||||||.+-
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk 82 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLM 82 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 467889999999999998765
No 216
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=86.09 E-value=0.16 Score=50.37 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|..+.+.|+.||||||.+-
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr 48 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLR 48 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHHHH
Confidence 3568899999999999999866
No 217
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.97 E-value=0.2 Score=46.13 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=20.6
Q ss_pred cCCeEEEEcCCCCCcccchhhhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFITLK 95 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll~e 95 (455)
.+..+++.|+.|||||||+..+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999998755443
No 218
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.97 E-value=0.3 Score=45.57 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=16.2
Q ss_pred HcCCeEEEEcCCCCCcccch
Q psy6094 70 RNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtql 89 (455)
..+..+++.|++|||||+.+
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 45678999999999999443
No 219
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=85.88 E-value=0.15 Score=49.13 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=17.2
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.+.++.+.|++||||||.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35678899999999998876
No 220
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.87 E-value=0.17 Score=45.42 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..+..+++.|++||||||.+-
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHH
Confidence 4568899999999999997765
No 221
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=85.83 E-value=0.24 Score=44.27 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=18.8
Q ss_pred cCCeEEEEcCCCCCcccchhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll 93 (455)
.+..+++.|..||||||+.-.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999998875443
No 222
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=85.81 E-value=0.39 Score=45.49 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.1
Q ss_pred CCeEEEEcCCCCCcccch
Q psy6094 72 NQITVISGETGSGPPLHL 89 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtql 89 (455)
...+++.|++|||||+.+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567999999999999544
No 223
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=85.73 E-value=0.25 Score=44.73 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=17.6
Q ss_pred CCeEEEEcCCCCCcccchhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll 93 (455)
+..+++.|..||||||+.-.|.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999998875443
No 224
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=85.73 E-value=0.12 Score=46.40 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=16.1
Q ss_pred eEEEEcCCCCCcccchhhh
Q psy6094 74 ITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~l 92 (455)
.++|.|+.||||||++-.|
T Consensus 2 ~I~i~G~~GsGKsTl~~~L 20 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKL 20 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5789999999999987643
No 225
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=85.72 E-value=0.36 Score=45.74 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCCCcccch
Q psy6094 72 NQITVISGETGSGPPLHL 89 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtql 89 (455)
.+.+++.|++||||||.+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 568999999999999554
No 226
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.69 E-value=0.41 Score=46.55 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=19.9
Q ss_pred HHHHHHcCCe--EEEEcCCCCCcccchh
Q psy6094 65 VLDMVRNNQI--TVISGETGSGPPLHLD 90 (455)
Q Consensus 65 il~~i~~~~~--vii~~~TGSGKTtqlp 90 (455)
+-..+.+++. +++.|++|+||||.+-
T Consensus 37 L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 37 VRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp HHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 3345666766 8999999999997654
No 227
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=85.69 E-value=0.23 Score=44.71 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=17.6
Q ss_pred eEEEEcCCCCCcccchhhhhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFITLKR 96 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll~e~ 96 (455)
.+++.|+.||||||+.-.+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37889999999998876554433
No 228
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=85.68 E-value=0.24 Score=47.79 Aligned_cols=20 Identities=15% Similarity=0.459 Sum_probs=17.5
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.+.++.+.|++||||||.+-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 35789999999999998876
No 229
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=85.66 E-value=0.36 Score=46.43 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=20.1
Q ss_pred HHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 65 VLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 65 il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
+.+.+.++++++|.|+.|+|||+.+-
T Consensus 24 L~~~l~~~~~v~i~G~~G~GKT~Ll~ 49 (350)
T 2qen_A 24 LEESLENYPLTLLLGIRRVGKSSLLR 49 (350)
T ss_dssp HHHHHHHCSEEEEECCTTSSHHHHHH
T ss_pred HHHHHhcCCeEEEECCCcCCHHHHHH
Confidence 33344456899999999999997765
No 230
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=85.59 E-value=0.17 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|.++.+.|++||||||.+-
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr 59 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILR 59 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHH
T ss_pred ECCCCEEEEECCCCCcHHHHHH
Confidence 3578899999999999999876
No 231
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.46 E-value=0.22 Score=48.29 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=16.0
Q ss_pred CeEEEEcCCCCCcccchhhh
Q psy6094 73 QITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~l 92 (455)
..++|+|||||||||..-.+
T Consensus 11 ~~i~i~GptgsGKt~la~~L 30 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIEL 30 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHH
Confidence 47889999999999765433
No 232
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=85.35 E-value=0.24 Score=43.35 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=16.8
Q ss_pred CeEEEEcCCCCCcccchhhhh
Q psy6094 73 QITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~ll 93 (455)
..+++.|..||||||+.-.+.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999998765443
No 233
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=85.30 E-value=0.18 Score=50.26 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|.++.+.|++||||||.+-
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr 47 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLR 47 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHH
T ss_pred ECCCCEEEEEcCCCchHHHHHH
Confidence 3568899999999999999876
No 234
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=85.14 E-value=0.27 Score=44.86 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=19.8
Q ss_pred cCCeEEEEcCCCCCcccchhhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
.|..+++.|..|||||||+-.+.+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999999874433
No 235
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=85.14 E-value=0.19 Score=49.76 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|..+.+.|+.||||||.+-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr 47 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLL 47 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHH
T ss_pred EcCCCEEEEEcCCCchHHHHHH
Confidence 3468899999999999999876
No 236
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=85.11 E-value=0.22 Score=45.23 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCCCcccchhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll 93 (455)
...+++.|+.||||||+.-.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999998875443
No 237
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=85.09 E-value=0.43 Score=46.45 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=15.0
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
++-|.|++||||||.+-
T Consensus 94 iigI~GpsGSGKSTl~~ 110 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSR 110 (321)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999997764
No 238
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=85.07 E-value=0.25 Score=44.44 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=17.0
Q ss_pred eEEEEcCCCCCcccchhhhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFITLK 95 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll~e 95 (455)
.+++.|+.||||||+.-.+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3788999999999887655433
No 239
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=85.06 E-value=0.19 Score=47.81 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=21.2
Q ss_pred HHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 65 VLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 65 il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
+.--+..|..++|.|++||||||.+-
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHH
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHH
Confidence 33346688999999999999998765
No 240
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=85.05 E-value=0.3 Score=47.22 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCCcccch
Q psy6094 61 MRDAVLDMVRNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 61 ~q~~il~~i~~~~~vii~~~TGSGKTtql 89 (455)
....+..++..+..+++.|++|+|||+.+
T Consensus 35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 35 MINRLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 34455566677889999999999999443
No 241
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=85.03 E-value=0.19 Score=49.78 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|..+.+.|+.||||||.+-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr 47 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLY 47 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHH
T ss_pred ECCCCEEEEECCCCchHHHHHH
Confidence 3468899999999999999876
No 242
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=85.03 E-value=0.19 Score=47.54 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=18.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+. |+.+.|.|+.||||||.+-
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk 48 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLR 48 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHH
T ss_pred EC-CEEEEEECCCCCCHHHHHH
Confidence 35 7889999999999998865
No 243
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=84.96 E-value=0.25 Score=42.59 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=16.6
Q ss_pred CeEEEEcCCCCCcccchhhhh
Q psy6094 73 QITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~ll 93 (455)
..+++.|..||||||+.-.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999997765443
No 244
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=84.94 E-value=0.26 Score=43.19 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=16.9
Q ss_pred eEEEEcCCCCCcccchhhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll~ 94 (455)
.+++.|..||||||+.-.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999988764443
No 245
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=84.92 E-value=0.27 Score=43.21 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=16.1
Q ss_pred CeEEEEcCCCCCcccchhh
Q psy6094 73 QITVISGETGSGPPLHLDF 91 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~ 91 (455)
.++.+.|+.||||||.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~ 23 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEK 23 (169)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4688999999999987763
No 246
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=84.88 E-value=0.21 Score=46.19 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=17.8
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..+.++-|.|+.||||||.+-
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHH
Confidence 4567788899999999997764
No 247
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=84.79 E-value=0.3 Score=43.50 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCCCcccchhhhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFITLK 95 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll~e 95 (455)
+..+++.|..||||||+.-.|.+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999887555443
No 248
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=84.61 E-value=0.39 Score=49.16 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHH----HcCCeEEEEcCCCCCcccch
Q psy6094 57 PSYQMRDAVLDMV----RNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 57 P~~~~q~~il~~i----~~~~~vii~~~TGSGKTtql 89 (455)
..+++|.+.++.+ ..+...|+..+||+|||.+.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~a 73 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQT 73 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHH
Confidence 3678898887766 46778999999999999553
No 249
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=84.59 E-value=0.2 Score=46.67 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=17.1
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
.. .++.+.|+.||||||.+-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~ 42 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLE 42 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHH
Confidence 35 788899999999998765
No 250
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=84.55 E-value=0.28 Score=43.67 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=16.8
Q ss_pred CeEEEEcCCCCCcccchhhhh
Q psy6094 73 QITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~ll 93 (455)
..+++.|..||||||+.-.+.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999998765443
No 251
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=84.55 E-value=0.28 Score=41.89 Aligned_cols=18 Identities=44% Similarity=0.671 Sum_probs=15.3
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
...+|.|++||||||.+-
T Consensus 24 g~~~I~G~NGsGKStil~ 41 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLD 41 (149)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 478999999999997665
No 252
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=84.50 E-value=0.4 Score=45.07 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=16.1
Q ss_pred HcCCeEEEEcCCCCCcccch
Q psy6094 70 RNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtql 89 (455)
.....+++.|++|||||+.+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHH
Confidence 34667999999999999544
No 253
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=84.50 E-value=0.21 Score=49.74 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|.++.+.|+.||||||.+-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr 47 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLR 47 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCcHHHHHHH
Confidence 3478899999999999999876
No 254
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=84.49 E-value=0.21 Score=49.69 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|..+.+.|+.||||||.+-
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr 55 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLR 55 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHH
T ss_pred ECCCCEEEEECCCCChHHHHHH
Confidence 3578899999999999999876
No 255
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=84.48 E-value=0.27 Score=45.35 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=17.7
Q ss_pred HHcCCeEEEEcCCCCCcccchhhhhh
Q psy6094 69 VRNNQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
...+..+++.|+.|||||||+-.+.+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34688899999999999999874433
No 256
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=84.46 E-value=3.6 Score=42.76 Aligned_cols=115 Identities=16% Similarity=0.055 Sum_probs=74.1
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeC--CCCccCCCCC--
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLAT--NIAETSITID-- 259 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaT--niae~gitI~-- 259 (455)
..+|.+|||+|+....+.+++. . +..++.=..+++..+..+.|+ ..+ .-|+++| .-..-|||++
T Consensus 391 ~~~g~~lvlF~Sy~~l~~v~~~---~------~~~v~~q~~~~~~~~~~~~~~--~~~-~~vl~~v~gg~~~EGiD~~d~ 458 (551)
T 3crv_A 391 QAKANVLVVFPSYEIMDRVMSR---I------SLPKYVESEDSSVEDLYSAIS--ANN-KVLIGSVGKGKLAEGIELRNN 458 (551)
T ss_dssp HCSSEEEEEESCHHHHHHHHTT---C------CSSEEECCSSCCHHHHHHHTT--SSS-SCEEEEESSCCSCCSSCCEET
T ss_pred hCCCCEEEEecCHHHHHHHHHh---c------CCcEEEcCCCCCHHHHHHHHH--hcC-CeEEEEEecceeccccccccc
Confidence 6789999999999999988862 1 123333223455555555554 223 4799998 5677799999
Q ss_pred ---CeeEEEeCCCCcccccccCC-----------Ccccc---cccccchhhHHhhhcccCCCCC--CeEEec
Q psy6094 260 ---DIVYVVDCGKTKMSNFDVKD-----------NIATL---KPEWISLANAKQRRGRAGRTLK--RSETQQ 312 (455)
Q Consensus 260 ---~V~~VID~g~~k~~~yd~~~-----------~~~~l---~~~~iSka~~~QR~GRaGR~~~--G~c~~L 312 (455)
..+.||-.|+|-... ||.. |...+ ...| .--...|=.||.=|... |..+-|
T Consensus 459 ~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 528 (551)
T 3crv_A 459 DRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDKCNVWLL 528 (551)
T ss_dssp TEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCEEEEEEE
T ss_pred CCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCccEEEEEe
Confidence 378888889886554 4421 22111 2333 44557788899988654 755544
No 257
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=84.43 E-value=0.21 Score=50.06 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|..+.+.|++||||||.+-
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr 65 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLS 65 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHH
T ss_pred EcCCCEEEEECCCCChHHHHHH
Confidence 4578899999999999998876
No 258
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=84.42 E-value=0.27 Score=44.85 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=20.0
Q ss_pred HcCCeEEEEcCCCCCcccchhhhhh
Q psy6094 70 RNNQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
..+..+++.|..|||||||+-.+.+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4577899999999999999874443
No 259
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=84.35 E-value=0.28 Score=45.49 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=19.1
Q ss_pred cCCeEEEEcCCCCCcccchhhhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFITLK 95 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll~e 95 (455)
....+++.|+.||||||+.-.|.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3447899999999999887655443
No 260
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=84.32 E-value=0.39 Score=46.70 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=15.4
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
..+++.|++||||||.+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 579999999999996654
No 261
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=84.22 E-value=0.28 Score=44.20 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=16.2
Q ss_pred eEEEEcCCCCCcccchhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll 93 (455)
.+++.|+.||||||+.-.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999998875444
No 262
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=84.20 E-value=0.32 Score=43.11 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=16.2
Q ss_pred cCCeEEEEcCCCCCcccch
Q psy6094 71 NNQITVISGETGSGPPLHL 89 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtql 89 (455)
.++..++.|+.||||||.+
T Consensus 2 ~g~i~vi~G~~gsGKTT~l 20 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTEL 20 (184)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred ccEEEEEECCCCCCHHHHH
Confidence 4678999999999999654
No 263
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=84.16 E-value=0.21 Score=45.53 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=18.9
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..+.++.+.|++||||||.+-
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHH
Confidence 4568899999999999997765
No 264
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=84.09 E-value=0.78 Score=44.49 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=17.6
Q ss_pred cCCeEEEEcCCCCCcccchhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll 93 (455)
.+..++|.|++|||||+.+-.++
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~ 66 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVM 66 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45689999999999996554443
No 265
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=83.97 E-value=4 Score=39.54 Aligned_cols=108 Identities=6% Similarity=-0.065 Sum_probs=60.2
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCccCCC-----C
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSIT-----I 258 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae~git-----I 258 (455)
..+..||||.......+-+.+.+... ++....+-|.....++ +. .++...|.+.|.-+.-|++ .
T Consensus 123 ~~~~kVLIfsq~t~~LDilE~~l~~~------~~~y~RlDG~~~~~~~-k~----~~~~~~i~Lltsag~~gin~~~~nl 191 (328)
T 3hgt_A 123 EYETETAIVCRPGRTMDLLEALLLGN------KVHIKRYDGHSIKSAA-AA----NDFSCTVHLFSSEGINFTKYPIKSK 191 (328)
T ss_dssp TSCEEEEEEECSTHHHHHHHHHHTTS------SCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCCCC
T ss_pred hCCCEEEEEECChhHHHHHHHHHhcC------CCceEeCCCCchhhhh-hc----ccCCceEEEEECCCCCCcCcccccC
Confidence 56778999999999988888888765 4888899888444332 21 2345677776664444454 4
Q ss_pred CCeeEEEeCCCCcccccccCCCcccccccccchhhHHhhhccc--CCCCCCeEEecCChh
Q psy6094 259 DDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRA--GRTLKRSETQQYPND 316 (455)
Q Consensus 259 ~~V~~VID~g~~k~~~yd~~~~~~~l~~~~iSka~~~QR~GRa--GR~~~G~c~~L~t~~ 316 (455)
-..+.||= ||+.-+...- --++..|+-|. |+..+=..|||.+..
T Consensus 192 ~~aD~VI~--------~DsdwNp~~d------~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 192 ARFDMLIC--------LDTTVDTSQK------DIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp SCCSEEEE--------CSTTCCTTSH------HHHHHHCCC---------CCEEEEEETT
T ss_pred CCCCEEEE--------ECCCCCCCCh------HHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 45566663 4433221110 01233355555 334456899998844
No 266
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=83.88 E-value=0.31 Score=41.81 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=16.2
Q ss_pred eEEEEcCCCCCcccchhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll 93 (455)
.+++.|..||||||+.-.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47899999999998765443
No 267
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=83.86 E-value=0.3 Score=44.47 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=16.9
Q ss_pred eEEEEcCCCCCcccchhhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll~ 94 (455)
.+++.|..||||||+.-.|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999988764443
No 268
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.84 E-value=0.55 Score=45.95 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=15.9
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
.+.+++.|++|+|||+.+-
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 5679999999999996554
No 269
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=83.81 E-value=0.34 Score=44.33 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=18.8
Q ss_pred cCCeEEEEcCCCCCcccchhhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
....+++.|.+||||||+.-.|.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999988754443
No 270
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=83.75 E-value=0.17 Score=44.45 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.2
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
+.+.|+|++||||||.+-
T Consensus 3 ~~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp CEEEEEESCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 467899999999997764
No 271
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=83.68 E-value=0.29 Score=47.39 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=18.5
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..+.++.|.|++||||||.+-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~ 108 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTAR 108 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHH
Confidence 4567889999999999997654
No 272
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.65 E-value=0.52 Score=43.65 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=14.6
Q ss_pred CCeEEEEcCCCCCcccch
Q psy6094 72 NQITVISGETGSGPPLHL 89 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtql 89 (455)
.+.+++.|++||||||.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 446999999999999443
No 273
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=83.60 E-value=0.35 Score=45.08 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=19.6
Q ss_pred HcCCeEEEEcCCCCCcccchhhhhh
Q psy6094 70 RNNQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
..+.++.|.|++||||||..-.|..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999987654443
No 274
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=83.39 E-value=0.25 Score=49.00 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|.++.|.|+.||||||.+-
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr 72 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIR 72 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHH
T ss_pred EcCCCEEEEEcCCCchHHHHHH
Confidence 3578899999999999998876
No 275
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=83.26 E-value=0.17 Score=49.81 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|..+.+.|+.||||||.+-
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr 44 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLE 44 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHH
T ss_pred EcCCCEEEEECCCCccHHHHHH
Confidence 3578899999999999999876
No 276
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=83.22 E-value=0.37 Score=43.58 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCCCcccchhhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
+..+++.|..||||||+.-.|.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999988754443
No 277
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=83.19 E-value=0.31 Score=44.07 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCCCcccchhhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
++.+++.|.-|||||||+-.|.+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~ 24 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYH 24 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 45788999999999999874433
No 278
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=83.15 E-value=0.37 Score=44.71 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=20.1
Q ss_pred cCCeEEEEcCCCCCcccchhhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
.+..+++.|..|||||||+..+.+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999874443
No 279
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=83.12 E-value=0.37 Score=44.04 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=20.2
Q ss_pred cCCeEEEEcCCCCCcccchhhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
.+..+++.|..|||||||+-.+.+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999875544
No 280
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=83.12 E-value=0.98 Score=49.73 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=22.0
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHH
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMC 207 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~ 207 (455)
..+.+|||++.+.++.+.+.++|.
T Consensus 441 ~~GqPVLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 441 ERGQPVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp HHTCCEEEECSSHHHHHHHHHHHH
T ss_pred HCCCCEEEEeCCHHHHHHHHHHHh
Confidence 457899999999999999999998
No 281
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=83.10 E-value=0.24 Score=49.05 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=16.8
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
+.++.+.|++||||||.+.
T Consensus 157 g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 5578899999999998876
No 282
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=83.00 E-value=0.33 Score=44.66 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=17.0
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..+..+++.|++||||||.+-
T Consensus 10 ~~G~i~litG~mGsGKTT~ll 30 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELI 30 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHH
Confidence 457789999999999997653
No 283
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=82.98 E-value=0.25 Score=45.10 Aligned_cols=22 Identities=18% Similarity=0.540 Sum_probs=18.6
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|.+++|.|++||||||.+-
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~ 41 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQ 41 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHH
Confidence 4578899999999999997644
No 284
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=82.97 E-value=0.34 Score=42.31 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=15.8
Q ss_pred CeEEEEcCCCCCcccchhhh
Q psy6094 73 QITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~l 92 (455)
..+++.|..||||||..-.|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 45889999999999765433
No 285
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=82.92 E-value=0.36 Score=42.92 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=16.1
Q ss_pred eEEEEcCCCCCcccchhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll 93 (455)
.+.|.|+.||||||..-.+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~ 22 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFR 22 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58899999999997765443
No 286
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=82.87 E-value=0.64 Score=45.62 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=15.5
Q ss_pred cCCeEEEEcCCCCCcccch
Q psy6094 71 NNQITVISGETGSGPPLHL 89 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtql 89 (455)
....+++.|++|||||+..
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467999999999999543
No 287
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=82.86 E-value=0.67 Score=44.10 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=18.4
Q ss_pred HHHHHHcCC--eEEEEcCCCCCcccchh
Q psy6094 65 VLDMVRNNQ--ITVISGETGSGPPLHLD 90 (455)
Q Consensus 65 il~~i~~~~--~vii~~~TGSGKTtqlp 90 (455)
+...+.+++ .+++.|++|+||||.+-
T Consensus 37 l~~~l~~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 37 LKHYVKTGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp HHHHHHHTCCCEEEEESCTTSSHHHHHH
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 334444444 69999999999996553
No 288
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.83 E-value=0.42 Score=46.24 Aligned_cols=28 Identities=11% Similarity=0.234 Sum_probs=20.1
Q ss_pred HHHHHHHHcC--CeEEEEcCCCCCcccchh
Q psy6094 63 DAVLDMVRNN--QITVISGETGSGPPLHLD 90 (455)
Q Consensus 63 ~~il~~i~~~--~~vii~~~TGSGKTtqlp 90 (455)
+.+...+..+ ..+++.|++|+||||.+-
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 3455555555 459999999999996553
No 289
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=82.71 E-value=0.35 Score=47.06 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=15.2
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
..++|+|+|||||||..-
T Consensus 6 ~~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 478999999999997644
No 290
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=82.68 E-value=0.36 Score=43.51 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=16.8
Q ss_pred CCeEEEEcCCCCCcccchhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~l 92 (455)
+.++.|.|..||||||+.-.+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 347889999999999876544
No 291
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=82.48 E-value=0.38 Score=47.14 Aligned_cols=18 Identities=33% Similarity=0.239 Sum_probs=15.1
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
.+++|.|+|||||||..-
T Consensus 8 ~lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCcCcHHHHHH
Confidence 478999999999997644
No 292
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=82.45 E-value=0.34 Score=45.38 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=19.0
Q ss_pred cCCeEEEEcCCCCCcccchhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll 93 (455)
.++.+++.|+.||||||..-.+.
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 38899999999999998765443
No 293
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.44 E-value=0.27 Score=46.43 Aligned_cols=22 Identities=9% Similarity=0.187 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..+.+++|.|++||||||.+-
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHH
Confidence 5678999999999999998765
No 294
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=82.42 E-value=0.71 Score=44.07 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=16.3
Q ss_pred HcCCeEEEEcCCCCCcccch
Q psy6094 70 RNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtql 89 (455)
..++.+++.|++|||||+.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHH
T ss_pred CCCceEEEECCCCcCHHHHH
Confidence 35678999999999999443
No 295
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=82.42 E-value=0.34 Score=47.24 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=17.6
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.+.++.+.|++||||||.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~ 147 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIA 147 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 36789999999999999876
No 296
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=82.35 E-value=0.38 Score=42.87 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=15.5
Q ss_pred eEEEEcCCCCCcccchhhh
Q psy6094 74 ITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~l 92 (455)
++.+.|+.||||||..-.+
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5788999999999776544
No 297
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=82.33 E-value=0.56 Score=45.91 Aligned_cols=17 Identities=24% Similarity=0.499 Sum_probs=15.2
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.++|.|++|+||||.+-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999997664
No 298
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=82.32 E-value=0.37 Score=47.64 Aligned_cols=17 Identities=35% Similarity=0.679 Sum_probs=15.2
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
..+|+|+|||||||.+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 67899999999998875
No 299
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=82.29 E-value=0.69 Score=47.82 Aligned_cols=30 Identities=13% Similarity=0.071 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 61 MRDAVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 61 ~q~~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
....++.++..+..+++.|++|+|||+.+-
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHHHH
Confidence 345566677788999999999999995443
No 300
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=82.20 E-value=0.5 Score=44.89 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=14.4
Q ss_pred CeEEEEcCCCCCcccch
Q psy6094 73 QITVISGETGSGPPLHL 89 (455)
Q Consensus 73 ~~vii~~~TGSGKTtql 89 (455)
..+++.|++|||||+.+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 47999999999999544
No 301
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=82.14 E-value=0.37 Score=50.98 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|++||||||.+-
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~ 399 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVN 399 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHH
Confidence 3568889999999999998875
No 302
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=82.07 E-value=0.66 Score=44.32 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=14.9
Q ss_pred CCeEEEEcCCCCCcccch
Q psy6094 72 NQITVISGETGSGPPLHL 89 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtql 89 (455)
...+++.|++|+|||+.+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 367999999999999544
No 303
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=82.06 E-value=0.28 Score=51.40 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=28.3
Q ss_pred HHHHHHHHHccCCCHHHHHHHHH--------HHHcCCeEEEEcCCCCCcccchh
Q psy6094 45 RYQEMLEARKKLPSYQMRDAVLD--------MVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 45 ~~~~~l~~R~~lP~~~~q~~il~--------~i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..+++..-...|.|....++.. .+..+.+++++|+.||||||..-
T Consensus 334 ~ir~~Lr~G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar 387 (552)
T 3cr8_A 334 EFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLAR 387 (552)
T ss_dssp HHHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHH
T ss_pred HHHHHHhcCCCCCccccccchhhhhhhhcccccccceEEEEECCCCChHHHHHH
Confidence 44555555445554433233333 23467899999999999997553
No 304
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=81.95 E-value=0.42 Score=45.87 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=17.4
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.++++++.|++|+||||.+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 36789999999999998776
No 305
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=81.91 E-value=0.39 Score=41.67 Aligned_cols=17 Identities=29% Similarity=0.233 Sum_probs=14.3
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.++|.|+.||||||..-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58899999999996543
No 306
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=81.66 E-value=0.47 Score=41.78 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=15.8
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
..++++|++||||||.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~ 24 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLK 24 (174)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHH
Confidence 578999999999998765
No 307
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=81.65 E-value=0.18 Score=49.77 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|..+.+.|+.||||||.+-
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr 49 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMR 49 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHH
T ss_pred ECCCCEEEEECCCCCcHHHHHH
Confidence 3578899999999999999876
No 308
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=81.62 E-value=0.58 Score=45.17 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.3
Q ss_pred CeEEEEcCCCCCcccch
Q psy6094 73 QITVISGETGSGPPLHL 89 (455)
Q Consensus 73 ~~vii~~~TGSGKTtql 89 (455)
..+++.|++|||||+.+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 46999999999999543
No 309
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=81.57 E-value=0.68 Score=46.63 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=18.3
Q ss_pred HHHHcCCeEEEEcCCCCCcccchh
Q psy6094 67 DMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 67 ~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
.+...+.++.+.|++|+||||.+-
T Consensus 64 ~~~~~~~~valvG~nGaGKSTLln 87 (413)
T 1tq4_A 64 EIDSSVLNVAVTGETGSGKSSFIN 87 (413)
T ss_dssp HHHHCCEEEEEEECTTSSHHHHHH
T ss_pred hcccCCeEEEEECCCCCcHHHHHH
Confidence 334445588899999999998765
No 310
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=81.44 E-value=0.43 Score=44.64 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=18.0
Q ss_pred CCeEEEEcCCCCCcccchhhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
...+++.|.+||||||+.-.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999988764443
No 311
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=81.40 E-value=0.58 Score=47.62 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=20.4
Q ss_pred HHHHHcCC--eEEEEcCCCCCcccchhhhh
Q psy6094 66 LDMVRNNQ--ITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 66 l~~i~~~~--~vii~~~TGSGKTtqlp~ll 93 (455)
...+..++ .+++.|++||||||.+-.+.
T Consensus 42 ~~~i~~~~~~~vLL~GppGtGKTtlAr~ia 71 (447)
T 3pvs_A 42 PRAIEAGHLHSMILWGPPGTGKTTLAEVIA 71 (447)
T ss_dssp HHHHHHTCCCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHcCCCcEEEEECCCCCcHHHHHHHHH
Confidence 35566665 49999999999997655443
No 312
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=81.39 E-value=0.4 Score=44.33 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=14.3
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
-+++.|++||||||.+-
T Consensus 51 g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48999999999996554
No 313
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=81.36 E-value=0.46 Score=45.95 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=17.6
Q ss_pred CeEEEEcCCCCCcccchhhhh
Q psy6094 73 QITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~ll 93 (455)
.+++|+|+.||||||.+-.++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~ 25 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHIL 25 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHH
Confidence 478999999999999987443
No 314
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=81.26 E-value=0.29 Score=43.48 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=17.5
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..+..+++.|++|+||||.+-
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~ 44 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALN 44 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 456679999999999997664
No 315
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=81.19 E-value=0.43 Score=46.56 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=16.5
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.+..+++.|++|+||||.+-
T Consensus 43 ~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 45679999999999996554
No 316
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=81.11 E-value=0.76 Score=44.73 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=14.5
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+||||.+-
T Consensus 40 ~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999996654
No 317
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=80.94 E-value=0.44 Score=42.07 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=15.2
Q ss_pred CeEEEEcCCCCCcccchhh
Q psy6094 73 QITVISGETGSGPPLHLDF 91 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~ 91 (455)
.++.|.|++||||||..-.
T Consensus 9 ~~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp EEEEEEECTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4678899999999976543
No 318
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=80.86 E-value=0.42 Score=50.49 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=18.4
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..|+.+.+.|++||||||.+-
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~ 388 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLS 388 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 467889999999999998875
No 319
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=80.85 E-value=0.51 Score=45.97 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=16.3
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
+..++|.|++|+||||.+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5689999999999997654
No 320
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=80.84 E-value=0.75 Score=44.84 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=15.9
Q ss_pred CeEEEEcCCCCCcccchhhh
Q psy6094 73 QITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~l 92 (455)
+.+++.|++|+|||+.+-.+
T Consensus 71 ~~vLl~GppGtGKT~la~~l 90 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGM 90 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 47999999999999654433
No 321
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=80.84 E-value=0.35 Score=50.93 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=18.4
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..|+.+.+.|++||||||.+-
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~ 385 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLIN 385 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHH
Confidence 467889999999999998875
No 322
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=80.80 E-value=0.51 Score=43.51 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=15.5
Q ss_pred cCCeEEEEcCCCCCcccch
Q psy6094 71 NNQITVISGETGSGPPLHL 89 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtql 89 (455)
....+++.|++|||||+.+
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4567999999999999544
No 323
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=80.55 E-value=0.4 Score=50.51 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.+.|++||||||.+-
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~ 387 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 3578899999999999998875
No 324
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.50 E-value=2.4 Score=42.39 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=14.7
Q ss_pred CCeEEEEcCCCCCcccch
Q psy6094 72 NQITVISGETGSGPPLHL 89 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtql 89 (455)
.+-+++.||+|||||+.+
T Consensus 182 prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCEEEESCSSSSHHHHH
T ss_pred CCceEEeCCCCCCHHHHH
Confidence 356999999999999543
No 325
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=80.48 E-value=0.46 Score=44.36 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=19.5
Q ss_pred HcCCeEEEEcCCCCCcccchhhhhh
Q psy6094 70 RNNQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
.....+++.|..||||||+.-.|.+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999875544
No 326
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=80.42 E-value=0.46 Score=45.70 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=15.6
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
+..+++.|++||||||.+-
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4579999999999996543
No 327
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=80.32 E-value=0.41 Score=44.56 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=18.1
Q ss_pred cCCeEEEEcCCCCCcccchhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll 93 (455)
.+..+++.|++||||||..-.|.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999998765443
No 328
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=80.32 E-value=0.52 Score=44.76 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=15.0
Q ss_pred CCeEEEEcCCCCCcccch
Q psy6094 72 NQITVISGETGSGPPLHL 89 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtql 89 (455)
+..+++.|++|||||+.+
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 347999999999999554
No 329
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=80.31 E-value=0.47 Score=47.60 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=15.2
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
.+++|+|+|||||||..-
T Consensus 3 ~~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEEECSSSSHHHHHH
T ss_pred cEEEEECcchhhHHHHHH
Confidence 468899999999997654
No 330
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=80.25 E-value=0.44 Score=47.12 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=15.6
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
...+|+|+||+|||+.+-
T Consensus 26 gl~vi~G~NGaGKT~ile 43 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFE 43 (371)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 578999999999997765
No 331
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=80.04 E-value=0.46 Score=45.69 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=17.1
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..+.++-|.|++||||||.+-
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~ 98 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTAR 98 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 455688899999999997654
No 332
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=80.04 E-value=0.5 Score=44.69 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=14.9
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+.+.|++||||||.+-
T Consensus 4 ~v~lvG~nGaGKSTLln 20 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVN 20 (270)
T ss_dssp EEEEEESSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999998876
No 333
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=79.96 E-value=0.87 Score=48.15 Aligned_cols=28 Identities=14% Similarity=0.350 Sum_probs=23.0
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 63 DAVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 63 ~~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
+.+-.++..+..+++.|++||||||.+-
T Consensus 51 ~~l~~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred hhccccccCCCEEEEEeCCCCCHHHHHH
Confidence 4455667888999999999999997764
No 334
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=79.92 E-value=0.48 Score=45.29 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
+.++.|.|++||||||..-
T Consensus 31 ~~ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578899999999997653
No 335
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=79.73 E-value=0.39 Score=50.62 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=18.4
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..|+.+.+.|++||||||.+-
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~ 387 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIAS 387 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 467889999999999998875
No 336
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=79.73 E-value=0.37 Score=49.70 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=16.9
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
+.++.+.|++||||||.+-
T Consensus 293 GeVI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIG 311 (503)
T ss_dssp TEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCcccHHHHHH
Confidence 5688999999999999876
No 337
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.56 E-value=2.1 Score=43.18 Aligned_cols=21 Identities=14% Similarity=0.369 Sum_probs=16.1
Q ss_pred CCeEEEEcCCCCCcccchhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~l 92 (455)
.+-+++.||+|||||+.+-.+
T Consensus 206 prGiLL~GPPGtGKT~lakAi 226 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAV 226 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456999999999999554433
No 338
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=79.45 E-value=0.47 Score=47.21 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=17.8
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..++.+++.|++||||||.+-
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~ 187 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAA 187 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 467899999999999997654
No 339
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=79.43 E-value=0.5 Score=43.41 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCCCcccchhhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
+..+++.|..||||||+.-.|.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45688999999999999774443
No 340
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=79.37 E-value=0.42 Score=50.46 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=18.3
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..|+.+.|.|++||||||.+-
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~ 387 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMN 387 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 467889999999999998875
No 341
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=79.16 E-value=0.68 Score=44.45 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=16.1
Q ss_pred HcCCeEEEEcCCCCCcccch
Q psy6094 70 RNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtql 89 (455)
..+..+++.|+||+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45667999999999999443
No 342
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=79.15 E-value=0.45 Score=48.71 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|..+.|.|++||||||.+-
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr 156 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSR 156 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHH
T ss_pred eCCCCEEEEECCCCCCHHHHHH
Confidence 4589999999999999998865
No 343
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=79.00 E-value=0.91 Score=44.52 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.1
Q ss_pred CCeEEEEcCCCCCcccch
Q psy6094 72 NQITVISGETGSGPPLHL 89 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtql 89 (455)
.+.+++.|++|||||+.+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567999999999999443
No 344
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=78.90 E-value=0.85 Score=43.75 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=18.9
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..++.+.+.|++|+||||.+-
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln 183 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILS 183 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHH
T ss_pred hccCcEEEEECCCCCCHHHHHH
Confidence 4468889999999999998775
No 345
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=78.90 E-value=0.81 Score=45.14 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCCcccchhh
Q psy6094 69 VRNNQITVISGETGSGPPLHLDF 91 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp~ 91 (455)
...++.+.+.|++|+||||.+-.
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~ 234 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNA 234 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHH
T ss_pred hcCCCEEEEECCCCccHHHHHHH
Confidence 45788999999999999977653
No 346
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=78.89 E-value=0.75 Score=44.43 Aligned_cols=17 Identities=41% Similarity=0.644 Sum_probs=15.5
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
+.+|.|++||||||.+-
T Consensus 26 ~~~i~G~NGsGKS~ll~ 42 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIID 42 (322)
T ss_dssp EEEEECCTTTCSTHHHH
T ss_pred cEEEECCCCCcHHHHHH
Confidence 89999999999998766
No 347
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=78.85 E-value=0.58 Score=44.39 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=17.6
Q ss_pred CeEEEEcCCCCCcccchhhhhh
Q psy6094 73 QITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~ll~ 94 (455)
..+++.|.+||||||+.-.+.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999998765543
No 348
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=78.82 E-value=0.52 Score=47.66 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=18.5
Q ss_pred HHcCCe--EEEEcCCCCCcccchh
Q psy6094 69 VRNNQI--TVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~--vii~~~TGSGKTtqlp 90 (455)
+..|.+ +.|.|++||||||.+-
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln 60 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMD 60 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHH
T ss_pred ecCCCeeEEEEECCCCCCHHHHHH
Confidence 567888 9999999999998875
No 349
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=78.81 E-value=0.59 Score=41.99 Aligned_cols=18 Identities=44% Similarity=0.671 Sum_probs=15.4
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
...+|.|++||||||.+-
T Consensus 24 ~~~~I~G~NgsGKStil~ 41 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLD 41 (203)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHH
Confidence 478999999999997664
No 350
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=78.70 E-value=0.61 Score=41.80 Aligned_cols=19 Identities=21% Similarity=0.504 Sum_probs=15.9
Q ss_pred EEEEcCCCCCcccchhhhh
Q psy6094 75 TVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 75 vii~~~TGSGKTtqlp~ll 93 (455)
+++.|.-|||||||+-.|.
T Consensus 3 I~~EG~DGsGKsTq~~~L~ 21 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999987443
No 351
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=78.59 E-value=0.56 Score=44.11 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=14.4
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
-+++.|++||||||.+-
T Consensus 75 gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCcChHHHHHH
Confidence 48999999999996654
No 352
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=78.42 E-value=0.59 Score=41.79 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=16.2
Q ss_pred cCCeEEEEcCCCCCcccch
Q psy6094 71 NNQITVISGETGSGPPLHL 89 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtql 89 (455)
.++..++.|+.||||||.+
T Consensus 7 ~g~i~v~~G~mgsGKTT~l 25 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEEL 25 (191)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCcHHHHH
Confidence 4678999999999999655
No 353
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=78.20 E-value=0.59 Score=45.10 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=16.3
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
++++.+.|++||||||.+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 3578899999999998876
No 354
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=78.16 E-value=0.63 Score=43.49 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=14.2
Q ss_pred CeEEEEcCCCCCcccch
Q psy6094 73 QITVISGETGSGPPLHL 89 (455)
Q Consensus 73 ~~vii~~~TGSGKTtql 89 (455)
..+++.|++|||||+.+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46999999999999443
No 355
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=77.97 E-value=0.48 Score=43.20 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=18.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|..++|.|++|+|||+..-
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l 48 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHH
Confidence 3457899999999999996544
No 356
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=77.77 E-value=0.66 Score=46.08 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=18.1
Q ss_pred cCCeEEEEcCCCCCcccchhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~l 92 (455)
.+.+++|.|+|||||||.+-.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~ 55 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKML 55 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHH
Confidence 5667999999999999877633
No 357
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=77.70 E-value=0.55 Score=47.31 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=17.1
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.+..++|.|+||||||+.+.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~ 71 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLR 71 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHH
T ss_pred CcceEEEECCCCCCHHHHHH
Confidence 45679999999999998765
No 358
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=77.23 E-value=0.67 Score=42.56 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=19.2
Q ss_pred cCCeEEEEcCCCCCcccchhhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
.+..+++.|..||||||+.-.+.+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 466888999999999999874433
No 359
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.02 E-value=1.3 Score=41.90 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=14.2
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+|||+.+-
T Consensus 44 ~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 38999999999996543
No 360
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=76.96 E-value=1.1 Score=45.82 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=17.9
Q ss_pred HHHHH--HcCCeEEEEcCCCCCcccch
Q psy6094 65 VLDMV--RNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 65 il~~i--~~~~~vii~~~TGSGKTtql 89 (455)
++..+ ....++++.|++|+|||+.+
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred HHHHHhccCCCCeEEECCCCCCHHHHH
Confidence 44444 24567999999999999443
No 361
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=76.87 E-value=1.2 Score=42.99 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=15.0
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
...+++.|++|||||+.+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 3459999999999995543
No 362
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=76.81 E-value=0.68 Score=43.75 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=14.2
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
-+++.|++||||||.+-
T Consensus 46 GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp EEEEESSTTSCHHHHHH
T ss_pred eEEEECCCCCcHHHHHH
Confidence 38999999999996543
No 363
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=76.53 E-value=1.1 Score=43.00 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=18.5
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..++.+.+.|++||||||.+-
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~ 187 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLN 187 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHH
T ss_pred HhcCCeEEEECCCCCcHHHHHH
Confidence 4467889999999999997764
No 364
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=76.50 E-value=0.59 Score=48.82 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.8
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|.++.+.|+.||||||.+-
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk 65 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVK 65 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHH
Confidence 5688999999999999999876
No 365
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.13 E-value=3.2 Score=42.29 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=17.0
Q ss_pred cCCeEEEEcCCCCCcccchhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll 93 (455)
--+-+++.||+|||||+.+-.+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA 264 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVA 264 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHH
Confidence 35679999999999995543333
No 366
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=75.96 E-value=0.76 Score=53.26 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=18.7
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+-|+|+|||||||.+-
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~ 1123 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVA 1123 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHH
T ss_pred ECCCCEEEEECCCCChHHHHHH
Confidence 3467889999999999998875
No 367
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=75.92 E-value=2.1 Score=46.71 Aligned_cols=78 Identities=12% Similarity=0.091 Sum_probs=60.5
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCC-ccCCCCCCeeEE
Q psy6094 186 VVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIA-ETSITIDDIVYV 264 (455)
Q Consensus 186 ~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTnia-e~gitI~~V~~V 264 (455)
++.++|.+|+..=+...++.+..... ..++.+..+||+.+..++...++....|...|+|+|.-. ...+...++.+|
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~--~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lV 494 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFS--KFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLV 494 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHT--CSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhh--hcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceE
Confidence 56899999999988888877765421 124789999999999999888887778889999999732 234567888876
Q ss_pred E
Q psy6094 265 V 265 (455)
Q Consensus 265 I 265 (455)
|
T Consensus 495 V 495 (780)
T 1gm5_A 495 I 495 (780)
T ss_dssp E
T ss_pred E
Confidence 6
No 368
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=75.91 E-value=1.1 Score=42.85 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=13.5
Q ss_pred CCeEEEEcCCCCCcccchhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~l 92 (455)
+.++.|.|+.||||||..-.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L 25 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTF 25 (290)
T ss_dssp SCEEEEESCC---CCTHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 457889999999999765433
No 369
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=75.86 E-value=0.84 Score=48.30 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 58 SYQMRDAVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 58 ~~~~q~~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
.-+.|.+++.. .+..++|.|+.|||||+.+-
T Consensus 10 Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 10 LNDKQREAVAA--PRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CCHHHHHHHTC--CSSCEEEEECTTSCHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEECCCCCHHHHHH
Confidence 34557777763 35568999999999997765
No 370
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.81 E-value=2.7 Score=42.49 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=16.5
Q ss_pred CCeEEEEcCCCCCcccchhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll 93 (455)
.+-+++.||+|||||+.+-.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA 236 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACA 236 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHH
Confidence 4569999999999995543333
No 371
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=75.78 E-value=0.57 Score=46.15 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=18.8
Q ss_pred HHc--CCeEEEEcCCCCCcccchh
Q psy6094 69 VRN--NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~--~~~vii~~~TGSGKTtqlp 90 (455)
+.. ++.+.|.|++||||||.+-
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk 188 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVN 188 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHH
T ss_pred HHHhhhCeEEEECCCCCCHHHHHH
Confidence 456 7889999999999998875
No 372
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=75.69 E-value=0.75 Score=44.84 Aligned_cols=19 Identities=42% Similarity=0.651 Sum_probs=15.8
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
....+|.|++||||||.+-
T Consensus 23 ~~~~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLD 41 (339)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3478899999999997765
No 373
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=75.57 E-value=0.59 Score=48.54 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.5
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|.++.|.|++||||||.+-
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~ 57 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSI 57 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHH
Confidence 4578999999999999998876
No 374
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.48 E-value=1.5 Score=45.22 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCCCcccchhhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
.+.+++.|++|+||||.+-.+..
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999976554443
No 375
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=75.29 E-value=0.85 Score=43.19 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=13.6
Q ss_pred eEEEEcCCCCCcccch
Q psy6094 74 ITVISGETGSGPPLHL 89 (455)
Q Consensus 74 ~vii~~~TGSGKTtql 89 (455)
.+++.|++|+|||+.+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 4899999999999544
No 376
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=75.26 E-value=0.86 Score=40.30 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=16.1
Q ss_pred eEEEEcCCCCCcccchhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll 93 (455)
++.|.|+.||||||..-.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la 23 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999997665443
No 377
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=75.25 E-value=0.85 Score=42.23 Aligned_cols=20 Identities=30% Similarity=0.275 Sum_probs=15.8
Q ss_pred eEEEEcCCCCCcccchhhhh
Q psy6094 74 ITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll 93 (455)
++.|.|+.||||||..-.|.
T Consensus 24 iI~I~G~~GSGKST~a~~L~ 43 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIV 43 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999997654443
No 378
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=75.12 E-value=0.91 Score=40.51 Aligned_cols=22 Identities=14% Similarity=0.418 Sum_probs=16.8
Q ss_pred CCeEEEEcCCCCCcccchhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll 93 (455)
+.++.++|..||||||..-.+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4467789999999997665443
No 379
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=75.10 E-value=0.76 Score=47.58 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=17.2
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..+..++|.|.|||||||.+-
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~ 185 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVN 185 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHH
Confidence 345679999999999997665
No 380
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=75.00 E-value=0.83 Score=38.17 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=14.1
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+||||.+-
T Consensus 3 ki~v~G~~~~GKSsli~ 19 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFN 19 (161)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996654
No 381
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=74.84 E-value=0.82 Score=38.14 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=14.1
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|.+|+||||.+-
T Consensus 5 ~i~v~G~~~~GKssl~~ 21 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTI 21 (166)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999996654
No 382
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=74.72 E-value=0.66 Score=49.75 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=18.2
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..|..+.|.|++||||||.+-
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl~ 366 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLVN 366 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHHT
T ss_pred cCCCEEEEEeeCCCCHHHHHH
Confidence 357889999999999999874
No 383
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=74.61 E-value=2.7 Score=51.88 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=30.6
Q ss_pred HHHHHHHccCCCHHHHHH---HHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 47 QEMLEARKKLPSYQMRDA---VLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 47 ~~~l~~R~~lP~~~~q~~---il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
.+..++++-.|.-.+-.+ +.+.+..+.-+++.|+|||||||.+-
T Consensus 895 ~~~~~~~~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 895 KDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 344455566666555444 44556678889999999999998765
No 384
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=74.43 E-value=0.87 Score=43.13 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=16.2
Q ss_pred CeEEEEcCCCCCcccchhhh
Q psy6094 73 QITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~l 92 (455)
..+.|.|..||||||+.-.+
T Consensus 76 ~iI~I~G~~GSGKSTva~~L 95 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRL 95 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 36889999999999876544
No 385
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=74.42 E-value=0.88 Score=38.24 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=14.1
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+||||.+-
T Consensus 7 ~i~v~G~~~~GKssl~~ 23 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQ 23 (168)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 37889999999996654
No 386
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=74.25 E-value=1.2 Score=42.81 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=16.0
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
.+++|.|+.|+|||+.+-
T Consensus 31 ~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 689999999999997765
No 387
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=74.22 E-value=0.89 Score=40.05 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=13.9
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|+.|+||||.+-
T Consensus 7 kv~lvG~~g~GKSTLl~ 23 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLS 23 (199)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 37899999999996553
No 388
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=74.10 E-value=0.58 Score=45.95 Aligned_cols=20 Identities=35% Similarity=0.410 Sum_probs=17.4
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.|.++.|.|++||||||.+-
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 56789999999999997755
No 389
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=74.09 E-value=0.87 Score=39.99 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=14.0
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|+.|+||||.+-
T Consensus 31 kv~lvG~~g~GKSTLl~ 47 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLS 47 (191)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 47899999999996553
No 390
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=73.98 E-value=0.68 Score=46.41 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.1
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..+.++.|.|++||||||.+-
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHH
Confidence 357899999999999997765
No 391
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=73.92 E-value=1.3 Score=43.78 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=15.1
Q ss_pred CCeEEEEcCCCCCcccch
Q psy6094 72 NQITVISGETGSGPPLHL 89 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtql 89 (455)
...+++.|++|+|||+.+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999443
No 392
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=73.86 E-value=1 Score=43.30 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=15.0
Q ss_pred CCeEEEEcCCCCCcccch
Q psy6094 72 NQITVISGETGSGPPLHL 89 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtql 89 (455)
...+++.|++|||||+.+
T Consensus 51 ~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCEEEEECSSSSCHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 457999999999999544
No 393
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=73.84 E-value=0.68 Score=44.69 Aligned_cols=29 Identities=10% Similarity=0.075 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 62 RDAVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 62 q~~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
=++++.-+..|..++|.|++|+||||..-
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l 86 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFAL 86 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHH
Confidence 34455446678999999999999996644
No 394
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=73.74 E-value=0.76 Score=48.71 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.9
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+++.+.|+.||||||.+-
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlk 135 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVK 135 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHH
T ss_pred CCCCCEEEEECCCCChHHHHHH
Confidence 5689999999999999999876
No 395
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=73.74 E-value=0.96 Score=43.05 Aligned_cols=23 Identities=26% Similarity=0.376 Sum_probs=16.8
Q ss_pred CeEEEEcCCCCCcccchhhhhhh
Q psy6094 73 QITVISGETGSGPPLHLDFITLK 95 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~ll~e 95 (455)
..+++.|++|||||+..-.+..+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56888999999999554444433
No 396
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=73.73 E-value=0.89 Score=44.38 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=20.9
Q ss_pred HHHHHH----HcCCeEEEEcCCCCCcccchh
Q psy6094 64 AVLDMV----RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 64 ~il~~i----~~~~~vii~~~TGSGKTtqlp 90 (455)
.++..+ ..+.++.+.|++||||||.+-
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~ 73 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTID 73 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHH
Confidence 455544 367789999999999997765
No 397
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=73.73 E-value=1 Score=43.46 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=14.8
Q ss_pred CCeEEEEcCCCCCcccch
Q psy6094 72 NQITVISGETGSGPPLHL 89 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtql 89 (455)
.+.+++.|++|||||+.+
T Consensus 45 ~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 367999999999999443
No 398
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=73.68 E-value=0.34 Score=48.42 Aligned_cols=19 Identities=32% Similarity=0.664 Sum_probs=16.7
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.| .++++|++||||||.+-
T Consensus 60 ~G-~~~lvG~NGaGKStLl~ 78 (415)
T 4aby_A 60 GG-FCAFTGETGAGKSIIVD 78 (415)
T ss_dssp SS-EEEEEESHHHHHHHHTH
T ss_pred CC-cEEEECCCCCCHHHHHH
Confidence 45 89999999999998875
No 399
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=73.57 E-value=0.79 Score=42.59 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=14.3
Q ss_pred CCeEEEEcCCCCCcccch
Q psy6094 72 NQITVISGETGSGPPLHL 89 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtql 89 (455)
.+.+++.|++|||||+.+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 345889999999999544
No 400
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=73.38 E-value=1.1 Score=40.87 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=18.4
Q ss_pred cCCeEEEEcCCCCCcccchhhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFITL 94 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll~ 94 (455)
.+..+.|.|+.||||||..-.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999987654443
No 401
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=73.30 E-value=1 Score=41.61 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=17.6
Q ss_pred cCCeEEEEcCCCCCcccchhhhh
Q psy6094 71 NNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp~ll 93 (455)
...++.|.|++||||||..-.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999998765443
No 402
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=73.26 E-value=0.76 Score=47.98 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=18.5
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..|.++.|.|+.||||||.+-
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~ 312 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFAR 312 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 468889999999999998875
No 403
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=73.25 E-value=0.79 Score=48.56 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.9
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+++.+.|+.||||||.+-
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLk 121 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALK 121 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHH
T ss_pred CCCCCEEEEECCCCChHHHHHH
Confidence 4679999999999999999876
No 404
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=72.99 E-value=0.99 Score=39.24 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.2
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
-.+++.|++|+||||.+-
T Consensus 49 ~~i~vvG~~g~GKSsll~ 66 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLT 66 (193)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 468999999999997664
No 405
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=72.87 E-value=1.3 Score=43.42 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=14.2
Q ss_pred CeEEEEcCCCCCcccch
Q psy6094 73 QITVISGETGSGPPLHL 89 (455)
Q Consensus 73 ~~vii~~~TGSGKTtql 89 (455)
..+++.|++|||||+.+
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46899999999999544
No 406
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=72.66 E-value=1.1 Score=44.16 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.0
Q ss_pred CCeEEEEcCCCCCcccch
Q psy6094 72 NQITVISGETGSGPPLHL 89 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtql 89 (455)
...+++.|++|||||+..
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999544
No 407
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=72.51 E-value=1.8 Score=44.01 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=16.4
Q ss_pred CeEEEEcCCCCCcccchhhhh
Q psy6094 73 QITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp~ll 93 (455)
+.+++.|++|||||+..-.+.
T Consensus 64 ~~iLl~GppGtGKT~la~ala 84 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIA 84 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHH
Confidence 579999999999996654333
No 408
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=72.35 E-value=2.4 Score=41.94 Aligned_cols=79 Identities=8% Similarity=0.039 Sum_probs=58.2
Q ss_pred cCCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCCCc----cCCCCC
Q psy6094 184 MLVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAE----TSITID 259 (455)
Q Consensus 184 ~~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTniae----~gitI~ 259 (455)
..++.+||.+|++.-+...++.++.... .++.+..+||+.+..++...++....|...|+|+|+-.- .-+...
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~---~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~ 138 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD---EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQK 138 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC---SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTC
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc---CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccc
Confidence 4577899999999999999999888532 357899999999997766555555566678999996321 014456
Q ss_pred CeeEEE
Q psy6094 260 DIVYVV 265 (455)
Q Consensus 260 ~V~~VI 265 (455)
++.+||
T Consensus 139 ~~~~iV 144 (414)
T 3oiy_A 139 RFDFVF 144 (414)
T ss_dssp CCSEEE
T ss_pred cccEEE
Confidence 777766
No 409
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=72.33 E-value=1.7 Score=43.93 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
.+.+++.|++|+||||.+-
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999996543
No 410
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=72.30 E-value=1.1 Score=37.57 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=14.1
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|.+|+||||.+-
T Consensus 6 ~i~v~G~~~~GKssl~~ 22 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTL 22 (168)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996553
No 411
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=72.27 E-value=1.1 Score=37.81 Aligned_cols=17 Identities=24% Similarity=0.310 Sum_probs=14.0
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+||||.+-
T Consensus 8 ~i~v~G~~~~GKSsli~ 24 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMW 24 (170)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 47899999999996553
No 412
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=72.21 E-value=1.1 Score=38.30 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=14.3
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+||||.+-
T Consensus 10 ~i~v~G~~~~GKSsli~ 26 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMH 26 (182)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999996654
No 413
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=72.15 E-value=1.1 Score=38.16 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=14.3
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+||||.+-
T Consensus 5 ~v~lvG~~gvGKStL~~ 21 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFN 21 (165)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997654
No 414
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=71.96 E-value=1.1 Score=37.65 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=14.0
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+||||.+-
T Consensus 5 ~i~v~G~~~~GKssli~ 21 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVL 21 (170)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999996553
No 415
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=71.90 E-value=1.1 Score=37.45 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.0
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+||||.+-
T Consensus 5 ~i~v~G~~~~GKSsli~ 21 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTV 21 (167)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996553
No 416
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=71.73 E-value=1.3 Score=44.61 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=17.6
Q ss_pred CCeEEEEcCCCCCcccchhhhh
Q psy6094 72 NQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp~ll 93 (455)
..+++++|..||||||..-.+.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999998765443
No 417
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=71.72 E-value=0.93 Score=41.17 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=14.3
Q ss_pred CeEEEEcCCCCCcccch
Q psy6094 73 QITVISGETGSGPPLHL 89 (455)
Q Consensus 73 ~~vii~~~TGSGKTtql 89 (455)
+.+++.||+||||||..
T Consensus 59 n~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SEEEEESCGGGCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46999999999999543
No 418
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=71.68 E-value=1.1 Score=39.98 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=16.3
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.-.++++.|.+|+||||.+-
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~ 48 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIE 48 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHH
Confidence 34578899999999997664
No 419
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=71.64 E-value=1.1 Score=38.85 Aligned_cols=17 Identities=41% Similarity=0.546 Sum_probs=14.2
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
-+++.|++|+||||.+-
T Consensus 4 kv~ivG~~gvGKStLl~ 20 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQ 20 (184)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999996654
No 420
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=71.58 E-value=0.86 Score=48.80 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=18.2
Q ss_pred HcCCeEEEEcCCCCCcccch
Q psy6094 70 RNNQITVISGETGSGPPLHL 89 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtql 89 (455)
..|+.+.|.|+.||||||.+
T Consensus 42 ~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 42 PRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHh
Confidence 57889999999999999996
No 421
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=71.52 E-value=1.1 Score=37.65 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=14.0
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|.+|+||||.+-
T Consensus 5 ~i~v~G~~~~GKssli~ 21 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVL 21 (172)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996553
No 422
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=71.50 E-value=1.1 Score=38.83 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=14.6
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|.+|+||||.+-
T Consensus 25 ~i~v~G~~~~GKSsli~ 41 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLN 41 (195)
T ss_dssp EEEEEEBTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999997664
No 423
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=71.49 E-value=1.1 Score=39.03 Aligned_cols=18 Identities=11% Similarity=0.327 Sum_probs=15.2
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
-.+++.|.+|+||||.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~ 41 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFIN 41 (195)
T ss_dssp CEEEEEEBTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 458999999999997664
No 424
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=71.43 E-value=1.1 Score=37.46 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=13.9
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|.+|+||||.+-
T Consensus 5 ki~v~G~~~~GKssli~ 21 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTV 21 (167)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999996553
No 425
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=71.39 E-value=2 Score=45.18 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=28.1
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHcC--------CeEEEEcCCCCCcccchhhh
Q psy6094 46 YQEMLEARKKLPSYQMRDAVLDMVRNN--------QITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 46 ~~~~l~~R~~lP~~~~q~~il~~i~~~--------~~vii~~~TGSGKTtqlp~l 92 (455)
..+++..-...|.|....++-..++.. .+++++|..||||||+.-.|
T Consensus 362 ir~~l~~g~~~p~w~~~~eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~L 416 (573)
T 1m8p_A 362 LRRRLRSGAHIPEWFSYPEVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARAL 416 (573)
T ss_dssp HHHHHHHTCCCCTTTSCHHHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHhccCCCCcccccccccHHHHHhcccccccceEEEeecCCCCCHHHHHHHH
Confidence 344444434444454444444444432 37889999999999876533
No 426
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=71.35 E-value=1.4 Score=43.46 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=17.2
Q ss_pred CCeEEE--EcCCCCCcccchhhhh
Q psy6094 72 NQITVI--SGETGSGPPLHLDFIT 93 (455)
Q Consensus 72 ~~~vii--~~~TGSGKTtqlp~ll 93 (455)
...++| .|++|+|||+.+-.++
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~ 73 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTV 73 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHH
Confidence 457888 9999999998766333
No 427
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=71.31 E-value=1.1 Score=37.66 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=14.0
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+||||.+-
T Consensus 5 ~i~v~G~~~~GKssli~ 21 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLV 21 (170)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 37899999999996554
No 428
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=71.21 E-value=2 Score=46.16 Aligned_cols=36 Identities=28% Similarity=0.587 Sum_probs=24.8
Q ss_pred HccCCC--HHHHHHHHHHH---HcCCeEEEEcCCCCCcccc
Q psy6094 53 RKKLPS--YQMRDAVLDMV---RNNQITVISGETGSGPPLH 88 (455)
Q Consensus 53 R~~lP~--~~~q~~il~~i---~~~~~vii~~~TGSGKTtq 88 (455)
+..+|. |..-+.....+ ..+|.+||+|++|+|||..
T Consensus 70 ~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~ 110 (697)
T 1lkx_A 70 KYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEA 110 (697)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhh
Confidence 344665 44455555544 3678999999999999943
No 429
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=71.20 E-value=2.1 Score=40.85 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=13.7
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
..+++.|++|+|||+.+-
T Consensus 49 ~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp SEEEECSSTTSSHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHH
Confidence 356778889999995543
No 430
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=71.18 E-value=1.3 Score=44.58 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=17.6
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.+.+++|.|++||||||.+-
T Consensus 25 ~~~~~~i~G~nG~GKstll~ 44 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMD 44 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999998766
No 431
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=70.93 E-value=1.3 Score=46.16 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=17.2
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.+..+++.||+||||||.+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 47789999999999997754
No 432
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.75 E-value=1.2 Score=43.17 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=14.2
Q ss_pred EEEEcCCCCCcccchh
Q psy6094 75 TVISGETGSGPPLHLD 90 (455)
Q Consensus 75 vii~~~TGSGKTtqlp 90 (455)
+++.|++|+||||.+-
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8999999999997654
No 433
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=70.69 E-value=0.94 Score=48.00 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.6
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..|.++.|.|+.||||||.+-
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk 400 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVK 400 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 468899999999999998876
No 434
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=70.57 E-value=2.1 Score=43.37 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=14.5
Q ss_pred CCeEEEEcCCCCCcccc
Q psy6094 72 NQITVISGETGSGPPLH 88 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtq 88 (455)
.+.+++.|++|||||+.
T Consensus 167 ~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CSEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999943
No 435
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=70.57 E-value=1.3 Score=39.69 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=15.4
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
+.++.|+|+.||||||..-
T Consensus 3 ~~~i~i~G~~gsGkst~~~ 21 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAK 21 (219)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4578999999999996553
No 436
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=70.55 E-value=1.2 Score=37.84 Aligned_cols=17 Identities=18% Similarity=0.450 Sum_probs=14.1
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+||||.+-
T Consensus 9 ~i~v~G~~~~GKSsli~ 25 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMN 25 (177)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996553
No 437
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=70.55 E-value=0.89 Score=46.24 Aligned_cols=28 Identities=7% Similarity=0.176 Sum_probs=21.4
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCcccchh
Q psy6094 63 DAVLDMVRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 63 ~~il~~i~~~~~vii~~~TGSGKTtqlp 90 (455)
+.++.-+..|..++|.|++|+||||.+-
T Consensus 194 D~~~gGl~~G~liiI~G~pG~GKTtl~l 221 (454)
T 2r6a_A 194 DRMTSGFQRSDLIIVAARPSVGKTAFAL 221 (454)
T ss_dssp HHHHSSBCTTCEEEEECCTTSCHHHHHH
T ss_pred HhhcCCCCCCCEEEEECCCCCCHHHHHH
Confidence 3344445678899999999999997654
No 438
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=70.45 E-value=0.96 Score=47.18 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=18.5
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..|.++.|.|+.||||||.+-
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk 330 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVK 330 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 458899999999999998876
No 439
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=70.35 E-value=1.1 Score=45.32 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=16.4
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
..++++.|++||||||.+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp SEEEEECCCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3578899999999998876
No 440
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=70.33 E-value=1.2 Score=37.45 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=14.2
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+||||.+-
T Consensus 8 ~i~v~G~~~~GKssli~ 24 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVL 24 (170)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 47899999999996654
No 441
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=70.07 E-value=1 Score=46.34 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=16.4
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
.++.|.|++||||||.+-
T Consensus 30 e~~~liG~nGsGKSTLl~ 47 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMA 47 (483)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 688999999999999876
No 442
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=70.05 E-value=1.3 Score=37.37 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=13.6
Q ss_pred EEEEcCCCCCcccchh
Q psy6094 75 TVISGETGSGPPLHLD 90 (455)
Q Consensus 75 vii~~~TGSGKTtqlp 90 (455)
+++.|.+|+||||.+-
T Consensus 5 i~ivG~~~~GKSsli~ 20 (169)
T 3q85_A 5 VMLVGESGVGKSTLAG 20 (169)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999996654
No 443
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=69.88 E-value=0.98 Score=52.35 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=19.3
Q ss_pred HcCCeEEEEcCCCCCcccchhhh
Q psy6094 70 RNNQITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp~l 92 (455)
..|+.+.|+|++||||||.+-.|
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll 464 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLL 464 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHH
T ss_pred cCCcEEEEEecCCCcHHHHHHHh
Confidence 46888999999999999887633
No 444
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=69.83 E-value=1.3 Score=37.28 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=13.8
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
-+++.|.+|+||||.+-
T Consensus 4 ki~~vG~~~~GKSsli~ 20 (166)
T 3q72_A 4 KVLLLGAPGVGKSALAR 20 (166)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999996553
No 445
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=69.77 E-value=2 Score=46.64 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=19.4
Q ss_pred HHHHHHH--cCCeEEEEcCCCCCcccchh
Q psy6094 64 AVLDMVR--NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 64 ~il~~i~--~~~~vii~~~TGSGKTtqlp 90 (455)
+++..+. ...++++.|++|+|||+.+-
T Consensus 191 ~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred HHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 3444443 44589999999999996544
No 446
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=69.73 E-value=0.59 Score=45.12 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=19.8
Q ss_pred HHcCCeEEEEcCCCCCcccchhhh
Q psy6094 69 VRNNQITVISGETGSGPPLHLDFI 92 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp~l 92 (455)
+..++.+.+.|++|+||||.+-.|
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L 193 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAI 193 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHh
Confidence 457899999999999999876533
No 447
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=69.65 E-value=1.3 Score=37.12 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=14.0
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|.+|+||||.+-
T Consensus 8 ~i~v~G~~~~GKssli~ 24 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVL 24 (170)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996553
No 448
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=69.61 E-value=1.3 Score=37.68 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.2
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+||||.+-
T Consensus 11 ~i~v~G~~~~GKssl~~ 27 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLL 27 (181)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996654
No 449
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=69.61 E-value=1.8 Score=39.81 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCcccchhhhhhhhc
Q psy6094 74 ITVISGETGSGPPLHLDFITLKRS 97 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp~ll~e~~ 97 (455)
-+-+.|++|||||||...|.+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC
Confidence 477899999999999876654443
No 450
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=69.53 E-value=1.3 Score=37.73 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=14.1
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|.+|+||||.+-
T Consensus 11 ~i~v~G~~~~GKssli~ 27 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTI 27 (181)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999996553
No 451
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=69.50 E-value=2.2 Score=47.92 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=31.4
Q ss_pred cCHHHHHHHHH--HccCCC--HHHHHHHHHHHH---cCCeEEEEcCCCCCcccc
Q psy6094 42 QSRRYQEMLEA--RKKLPS--YQMRDAVLDMVR---NNQITVISGETGSGPPLH 88 (455)
Q Consensus 42 ~~~~~~~~l~~--R~~lP~--~~~q~~il~~i~---~~~~vii~~~TGSGKTtq 88 (455)
.++++.++.+. |..+|. |..-+.....+. .+|.+||+|++|||||..
T Consensus 107 Y~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTes 160 (1052)
T 4anj_A 107 YSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTEN 160 (1052)
T ss_dssp TSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred CCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHH
Confidence 45666665533 334554 555566665554 678999999999999943
No 452
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=69.45 E-value=6.5 Score=35.15 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=48.5
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCC------CCccCCCC
Q psy6094 185 LVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATN------IAETSITI 258 (455)
Q Consensus 185 ~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTn------iae~gitI 258 (455)
.+..+||.+|+++-+....+.+.... ...+.+..++|+.+..++...+.. ...|+|+|+ +....+.+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~iiv~Tp~~l~~~~~~~~~~~ 165 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYS---YKGLKSICIYGGRNRNGQIEDISK----GVDIIIATPGRLNDLQMNNSVNL 165 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHC---CTTCCEEEECC------CHHHHHS----CCSEEEECHHHHHHHHHTTCCCC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhc---ccCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcCc
Confidence 56779999999999999888888753 235778889998887766555542 257999995 11234567
Q ss_pred CCeeEEE
Q psy6094 259 DDIVYVV 265 (455)
Q Consensus 259 ~~V~~VI 265 (455)
.++++||
T Consensus 166 ~~~~~lV 172 (228)
T 3iuy_A 166 RSITYLV 172 (228)
T ss_dssp TTCCEEE
T ss_pred ccceEEE
Confidence 7788766
No 453
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=69.43 E-value=1 Score=44.23 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=19.3
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
|..|+.+.|.|+.|+||||.+-
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~ 89 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLG 89 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHH
Confidence 4679999999999999998765
No 454
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=69.41 E-value=1.1 Score=45.51 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+.+.|.|+.||||||.+-
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~ 175 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLG 175 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHH
Confidence 5679999999999999997764
No 455
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=69.13 E-value=1.4 Score=38.06 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=14.4
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+||||.+-
T Consensus 9 ~i~lvG~~gvGKStL~~ 25 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFN 25 (188)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999996654
No 456
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=69.09 E-value=1.3 Score=38.01 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=15.6
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
+.-+++.|++|+||||.+-
T Consensus 4 ~~ki~ivG~~g~GKStLl~ 22 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLN 22 (172)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3458899999999997765
No 457
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=69.06 E-value=1.3 Score=37.52 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=14.1
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+||||.+-
T Consensus 16 ~i~v~G~~~~GKssli~ 32 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLIT 32 (179)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999996654
No 458
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=68.90 E-value=1.4 Score=42.74 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=15.9
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
++++.+.|++|+||||.+.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3468889999999998766
No 459
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=68.70 E-value=1.4 Score=37.28 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.6
Q ss_pred eEEEEcCCCCCcccch
Q psy6094 74 ITVISGETGSGPPLHL 89 (455)
Q Consensus 74 ~vii~~~TGSGKTtql 89 (455)
.+++.|++|+||||.+
T Consensus 6 ki~i~G~~~vGKSsl~ 21 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLA 21 (175)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCccHHHHH
Confidence 4789999999999654
No 460
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=68.48 E-value=1.4 Score=46.01 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.5
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..|+++-+.|+.||||||.+-
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlk 43 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLK 43 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHH
Confidence 4578899999999999999876
No 461
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=68.48 E-value=1.7 Score=36.91 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=15.6
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
.-.+++.|++|+||||.+-
T Consensus 8 ~~~i~v~G~~~~GKssl~~ 26 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLD 26 (178)
T ss_dssp CCEEEEESCTTTTHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4468899999999997664
No 462
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=68.42 E-value=1.4 Score=37.29 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.3
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|.+|+||||.+-
T Consensus 17 ~i~v~G~~~~GKSsli~ 33 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLH 33 (179)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999996554
No 463
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=68.42 E-value=1.8 Score=37.14 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=9.0
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|.+|+||||.+-
T Consensus 10 ki~v~G~~~~GKssl~~ 26 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLF 26 (183)
T ss_dssp EEEEECCCCC-------
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999996654
No 464
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=68.42 E-value=1.4 Score=38.04 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=14.3
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|.+|+||||.+-
T Consensus 23 ki~vvG~~~~GKSsli~ 39 (190)
T 3con_A 23 KLVVVGAGGVGKSALTI 39 (190)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 48899999999996654
No 465
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=68.39 E-value=1.6 Score=39.19 Aligned_cols=16 Identities=44% Similarity=0.827 Sum_probs=13.5
Q ss_pred eEEEEcCCCCCcccch
Q psy6094 74 ITVISGETGSGPPLHL 89 (455)
Q Consensus 74 ~vii~~~TGSGKTtql 89 (455)
..+++|+.|||||+..
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 5789999999999543
No 466
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=68.39 E-value=6.6 Score=34.27 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=51.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCC-----CC-ccCCCC
Q psy6094 185 LVVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATN-----IA-ETSITI 258 (455)
Q Consensus 185 ~~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTn-----ia-e~gitI 258 (455)
.+..+||.+|++.-+....+.+..... .+.+..+||+....++...+.. ...|+|+|. .. ...+..
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~ 142 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAP----HLKVVAVYGGTGYGKQKEALLR----GADAVVATPGRALDYLRQGVLDL 142 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCT----TSCEEEECSSSCSHHHHHHHHH----CCSEEEECHHHHHHHHHHTSSCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhh----cceEEEEECCCChHHHHHHhhC----CCCEEEECHHHHHHHHHcCCcch
Confidence 456799999999999999988887642 3678889998877665544431 357999995 11 123456
Q ss_pred CCeeEEE
Q psy6094 259 DDIVYVV 265 (455)
Q Consensus 259 ~~V~~VI 265 (455)
.++++||
T Consensus 143 ~~~~~iV 149 (207)
T 2gxq_A 143 SRVEVAV 149 (207)
T ss_dssp TTCSEEE
T ss_pred hhceEEE
Confidence 7777666
No 467
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=68.38 E-value=1.4 Score=39.12 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.7
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
-.+++.|++|+||||.+-
T Consensus 13 ~~i~~~G~~g~GKTsl~~ 30 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLT 30 (218)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 368999999999998876
No 468
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=68.24 E-value=2.5 Score=46.06 Aligned_cols=47 Identities=19% Similarity=0.369 Sum_probs=31.1
Q ss_pred cCHHHHHHHH--HHccCCC--HHHHHHHHHHHH---cCCeEEEEcCCCCCcccc
Q psy6094 42 QSRRYQEMLE--ARKKLPS--YQMRDAVLDMVR---NNQITVISGETGSGPPLH 88 (455)
Q Consensus 42 ~~~~~~~~l~--~R~~lP~--~~~q~~il~~i~---~~~~vii~~~TGSGKTtq 88 (455)
.+++..+... .+..+|. |..-+.....+. .+|.+||+|++|+|||..
T Consensus 103 Y~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~ 156 (784)
T 2v26_A 103 YSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTEN 156 (784)
T ss_dssp TSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred CCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceeh
Confidence 3455544443 2345674 666666666553 578999999999999943
No 469
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=68.23 E-value=1.1 Score=43.31 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=18.0
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..+.+++|.|++|||||+..-
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~ 125 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCH 125 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHH
T ss_pred CCCCcEEEEECCCCCCHhHHHH
Confidence 3457899999999999996654
No 470
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=68.22 E-value=1.4 Score=40.11 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.7
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|.+|+||||.+-
T Consensus 31 ~i~lvG~~g~GKStlin 47 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGN 47 (239)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999997765
No 471
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=68.17 E-value=1.4 Score=43.08 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=16.3
Q ss_pred CCeEEEEcCCCCCcccchh
Q psy6094 72 NQITVISGETGSGPPLHLD 90 (455)
Q Consensus 72 ~~~vii~~~TGSGKTtqlp 90 (455)
+.++.+.|++|+||||.+-
T Consensus 74 ~~~v~lvG~pgaGKSTLln 92 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIE 92 (349)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHH
Confidence 4578899999999998876
No 472
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=68.08 E-value=1.5 Score=36.96 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=14.3
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+||||.+-
T Consensus 9 ~i~v~G~~~~GKssl~~ 25 (171)
T 1upt_A 9 RILILGLDGAGKTTILY 25 (171)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999996554
No 473
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=68.06 E-value=1.2 Score=51.57 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=18.5
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..|+.+.|+|++||||||.+-
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ 434 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQ 434 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 467889999999999998875
No 474
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=68.02 E-value=2.8 Score=40.52 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=18.6
Q ss_pred HHHHHHcCC---eEEEEcCCCCCcccch
Q psy6094 65 VLDMVRNNQ---ITVISGETGSGPPLHL 89 (455)
Q Consensus 65 il~~i~~~~---~vii~~~TGSGKTtql 89 (455)
+..++.+++ .+++.|+.|+|||+..
T Consensus 14 l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 14 LVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp HHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 344555665 4899999999999554
No 475
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=67.75 E-value=1.4 Score=37.86 Aligned_cols=16 Identities=13% Similarity=0.329 Sum_probs=13.8
Q ss_pred EEEEcCCCCCcccchh
Q psy6094 75 TVISGETGSGPPLHLD 90 (455)
Q Consensus 75 vii~~~TGSGKTtqlp 90 (455)
+++.|++|+||||.+-
T Consensus 4 i~v~G~~~~GKSsli~ 19 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIY 19 (190)
T ss_dssp EEEEEBTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999997664
No 476
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=67.64 E-value=1.5 Score=38.32 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=14.2
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+||||.+-
T Consensus 16 ki~v~G~~~~GKSsli~ 32 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTL 32 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999996553
No 477
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=67.64 E-value=1.5 Score=37.60 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.1
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+||||.+-
T Consensus 6 ki~v~G~~~~GKSsli~ 22 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTI 22 (189)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999996654
No 478
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=67.62 E-value=1.5 Score=37.66 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=14.2
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+||||.+-
T Consensus 13 ki~v~G~~~~GKSsli~ 29 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLY 29 (195)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999996654
No 479
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=67.61 E-value=1.6 Score=39.14 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=14.9
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
..+++.|..|+||||.+-
T Consensus 39 ~~i~ivG~~gvGKTtl~~ 56 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIE 56 (226)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 468888999999997664
No 480
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=67.54 E-value=1.5 Score=37.41 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=14.1
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+||||.+-
T Consensus 20 ki~v~G~~~~GKSsli~ 36 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTL 36 (187)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999996553
No 481
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=67.52 E-value=1.3 Score=37.85 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=14.8
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
-.+++.|++|+||||.+-
T Consensus 19 ~~i~v~G~~~~GKssli~ 36 (183)
T 1moz_A 19 LRILILGLDGAGKTTILY 36 (183)
T ss_dssp EEEEEEEETTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 358899999999996654
No 482
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=67.36 E-value=1.2 Score=49.66 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=19.6
Q ss_pred HcCCeEEEEcCCCCCcccchhhhh
Q psy6094 70 RNNQITVISGETGSGPPLHLDFIT 93 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp~ll 93 (455)
..|+.+.|.|+.||||||.+-.|.
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 356778999999999999887443
No 483
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=67.25 E-value=10 Score=33.52 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=53.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEeecCCCChhhHhhhhcCCCCCceEEEEeCCC-----C-ccCCCCC
Q psy6094 186 VVPILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNI-----A-ETSITID 259 (455)
Q Consensus 186 ~g~iLVFlp~~~ei~~l~~~L~~~~~~~~~~~~v~~lhs~l~~~~r~~v~~~~~~g~~kVivaTni-----a-e~gitI~ 259 (455)
...+||.+|++.-++..++.++..... .+++.+..+||+.+..++...+.. +...|+|+|.- . ...+...
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~~~~~~~ 157 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKY-MPNVKVAVFFGGLSIKKDEEVLKK---NCPHIVVGTPGRILALARNKSLNLK 157 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTT-STTCCEEEESCCSCHHHHHHHHHH---SCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhh-CCCceEEEEeCCCChHHHHHHHhc---CCCCEEEeCHHHHHHHHHhCCCCcc
Confidence 348999999999998888877765321 124778899999988777665542 34589999951 1 2235677
Q ss_pred CeeEEE
Q psy6094 260 DIVYVV 265 (455)
Q Consensus 260 ~V~~VI 265 (455)
++++||
T Consensus 158 ~~~~lV 163 (220)
T 1t6n_A 158 HIKHFI 163 (220)
T ss_dssp TCCEEE
T ss_pred cCCEEE
Confidence 787766
No 484
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=67.18 E-value=1.7 Score=42.55 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=18.2
Q ss_pred HHcCCeEEEEcCCCCCcccchh
Q psy6094 69 VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 69 i~~~~~vii~~~TGSGKTtqlp 90 (455)
+..+.+++|.|++||||||..-
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal 79 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVAL 79 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHH
Confidence 3357899999999999997654
No 485
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=67.08 E-value=1.6 Score=37.91 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=14.2
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|.+|+||||.+-
T Consensus 27 ki~v~G~~~~GKSsLi~ 43 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLS 43 (193)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 48899999999996554
No 486
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=67.07 E-value=1.6 Score=37.42 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=14.2
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|.+|+||||.+-
T Consensus 20 ki~v~G~~~~GKSsl~~ 36 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTI 36 (183)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996654
No 487
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=67.06 E-value=1.5 Score=43.17 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=17.4
Q ss_pred cCCeEEEEcCCCCCcccchh
Q psy6094 71 NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 71 ~~~~vii~~~TGSGKTtqlp 90 (455)
.+.++.|.|++||||||.+-
T Consensus 60 ~G~i~~I~GppGsGKSTLal 79 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLAL 79 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 47899999999999997755
No 488
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=66.88 E-value=2.8 Score=45.77 Aligned_cols=47 Identities=15% Similarity=0.325 Sum_probs=31.0
Q ss_pred cCHHHHHHHH--HHccCCC--HHHHHHHHHHHH---cCCeEEEEcCCCCCcccc
Q psy6094 42 QSRRYQEMLE--ARKKLPS--YQMRDAVLDMVR---NNQITVISGETGSGPPLH 88 (455)
Q Consensus 42 ~~~~~~~~l~--~R~~lP~--~~~q~~il~~i~---~~~~vii~~~TGSGKTtq 88 (455)
.++++.++.. .+..+|. |..-+.....+. .+|.+||+|++|+|||..
T Consensus 119 Y~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~ 172 (795)
T 1w7j_A 119 YGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVS 172 (795)
T ss_dssp CSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred CCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchH
Confidence 3455555553 2455675 555556655543 678999999999999943
No 489
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=66.85 E-value=2.8 Score=45.51 Aligned_cols=48 Identities=19% Similarity=0.439 Sum_probs=30.4
Q ss_pred CHHHHHHHH--HHccCCC--HHHHHHHHHHHH---cCCeEEEEcCCCCCcccchh
Q psy6094 43 SRRYQEMLE--ARKKLPS--YQMRDAVLDMVR---NNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 43 ~~~~~~~l~--~R~~lP~--~~~q~~il~~i~---~~~~vii~~~TGSGKTtqlp 90 (455)
++...++.. .|..+|. |..-+.....+. .+|.+||+|+.|+|||...-
T Consensus 136 ~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK 190 (770)
T 1w9i_A 136 TQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTK 190 (770)
T ss_dssp SHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHH
T ss_pred CHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHH
Confidence 445544442 3445665 444555555443 67889999999999995433
No 490
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=66.80 E-value=1.6 Score=37.20 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.2
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|.+|+||||.+-
T Consensus 14 ki~v~G~~~~GKSsli~ 30 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVL 30 (181)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 48899999999996554
No 491
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=66.74 E-value=1.6 Score=37.50 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=14.1
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|++|+||||.+-
T Consensus 12 ki~v~G~~~~GKSsli~ 28 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLH 28 (186)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999996553
No 492
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=66.66 E-value=2.8 Score=45.58 Aligned_cols=46 Identities=22% Similarity=0.461 Sum_probs=30.6
Q ss_pred CHHHHHHHH--HHccCCC--HHHHHHHHHHHH---cCCeEEEEcCCCCCcccc
Q psy6094 43 SRRYQEMLE--ARKKLPS--YQMRDAVLDMVR---NNQITVISGETGSGPPLH 88 (455)
Q Consensus 43 ~~~~~~~l~--~R~~lP~--~~~q~~il~~i~---~~~~vii~~~TGSGKTtq 88 (455)
++.+.++.. .|..+|. |..-+.....+. .+|.+||+|+.|+|||..
T Consensus 135 ~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~ 187 (783)
T 4db1_A 135 TPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVN 187 (783)
T ss_dssp SHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred CHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchH
Confidence 444555443 3455665 555566665553 678899999999999943
No 493
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=66.57 E-value=2.5 Score=46.16 Aligned_cols=33 Identities=9% Similarity=0.189 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHH----cCCeEEEEcCCCCCcccch
Q psy6094 57 PSYQMRDAVLDMVR----NNQITVISGETGSGPPLHL 89 (455)
Q Consensus 57 P~~~~q~~il~~i~----~~~~vii~~~TGSGKTtql 89 (455)
.++++|.+.++.+. .+...|+..+||+|||.|.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~a 272 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQT 272 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHH
Confidence 45688999987655 7888999999999999654
No 494
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=66.55 E-value=1.1 Score=43.66 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=17.5
Q ss_pred HcCCeEEEEcCCCCCcccchh
Q psy6094 70 RNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 70 ~~~~~vii~~~TGSGKTtqlp 90 (455)
..+.+++|.|++|||||+..-
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 356889999999999996654
No 495
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=66.45 E-value=2.4 Score=43.05 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=15.0
Q ss_pred CeEEEEcCCCCCcccchh
Q psy6094 73 QITVISGETGSGPPLHLD 90 (455)
Q Consensus 73 ~~vii~~~TGSGKTtqlp 90 (455)
..+++.|++||||||..-
T Consensus 51 ~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 569999999999996543
No 496
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=66.42 E-value=1.7 Score=36.38 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=13.5
Q ss_pred EEEEcCCCCCcccchh
Q psy6094 75 TVISGETGSGPPLHLD 90 (455)
Q Consensus 75 vii~~~TGSGKTtqlp 90 (455)
+++.|++|+|||+.+-
T Consensus 3 i~~~G~~~~GKssl~~ 18 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILY 18 (164)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999996553
No 497
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=66.18 E-value=2.1 Score=44.32 Aligned_cols=45 Identities=11% Similarity=0.153 Sum_probs=29.4
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHH--------cCCeEEEEcCCCCCcccch
Q psy6094 45 RYQEMLEARKKLPSYQMRDAVLDMVR--------NNQITVISGETGSGPPLHL 89 (455)
Q Consensus 45 ~~~~~l~~R~~lP~~~~q~~il~~i~--------~~~~vii~~~TGSGKTtql 89 (455)
...++++.-...|-|-...++...+. .+.++++.|..||||||.-
T Consensus 360 ~IR~~Lr~G~~~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa 412 (511)
T 1g8f_A 360 ELRRRLRVGGEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLS 412 (511)
T ss_dssp HHHHHHHHTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHH
T ss_pred HHHHHHhCCCCCCccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHH
Confidence 45566666666665555555544433 3457889999999999543
No 498
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=66.17 E-value=1.7 Score=37.15 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.2
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|.+|+||||.+-
T Consensus 7 ~i~~~G~~~~GKssl~~ 23 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLI 23 (186)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996653
No 499
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=66.16 E-value=4.8 Score=50.37 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=32.5
Q ss_pred HHHHHHHHccCCCHHHHHHHHHH---HHcCCeEEEEcCCCCCcccchh
Q psy6094 46 YQEMLEARKKLPSYQMRDAVLDM---VRNNQITVISGETGSGPPLHLD 90 (455)
Q Consensus 46 ~~~~l~~R~~lP~~~~q~~il~~---i~~~~~vii~~~TGSGKTtqlp 90 (455)
..+..++++--|.-.+-.++++. +..+.-++++|+|||||||.+-
T Consensus 877 i~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 877 IQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 34445666666777766666555 4566779999999999997765
No 500
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=66.10 E-value=1.7 Score=36.97 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=14.1
Q ss_pred eEEEEcCCCCCcccchh
Q psy6094 74 ITVISGETGSGPPLHLD 90 (455)
Q Consensus 74 ~vii~~~TGSGKTtqlp 90 (455)
.+++.|.+|+||||.+-
T Consensus 12 ~i~v~G~~~~GKssli~ 28 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLV 28 (180)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECcCCCCHHHHHH
Confidence 47899999999996553
Done!