RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6094
(455 letters)
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 136 bits (344), Expect = 1e-34
Identities = 51/126 (40%), Positives = 68/126 (53%), Gaps = 10/126 (7%)
Query: 189 ILVFLPGWDTINSLHRSMCQ-----SSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGV- 242
IL+FL G D I R + + PL+ LP Q+ IF PE
Sbjct: 306 ILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHN 365
Query: 243 ----RKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRR 298
RK+V++TNIAETS+TID IVYVVD G +K ++ + + +L IS A+A+QR
Sbjct: 366 GRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRA 425
Query: 299 GRAGRT 304
GRAGRT
Sbjct: 426 GRAGRT 431
Score = 54.2 bits (131), Expect = 6e-08
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 43 SRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
+ +Y ++L+ R++LP + RD L + +NNQI V GETGSG
Sbjct: 80 TPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSG 121
Score = 28.8 bits (65), Expect = 5.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 341 ICTTQRPGAILVFLPGWDTINSLHRSMCQ 369
I T+ G IL+FL G D I R +
Sbjct: 297 IHATEEAGDILLFLTGEDEIEDAVRKISL 325
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 116 bits (291), Expect = 1e-28
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 12/116 (10%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
+ F+ + + + +++ L+ +S + V+
Sbjct: 174 TVWFVHSIKQGAEIGTCL------QKAGKKVLYLNRKT----FESEYPKCKSEKWDFVIT 223
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRT 304
T+I+E V+D + + ++ P I+ A+A QRRGR GR
Sbjct: 224 TDISEMGANF-KADRVIDPR-KTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRN 277
Score = 28.6 bits (64), Expect = 4.5
Identities = 4/13 (30%), Positives = 8/13 (61%)
Query: 72 NQITVISGETGSG 84
++TV+ G+G
Sbjct: 2 RELTVLDLHPGAG 14
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 115 bits (290), Expect = 2e-28
Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 13/119 (10%)
Query: 188 PILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVL 247
+ F+P N + + S ++I L + + V+
Sbjct: 190 KTVWFVPSIKAGNDIANCL------RKSGKRVIQLSRKT----FDTEYPKTKLTDWDFVV 239
Query: 248 ATNIAETSITIDDIVYVVDCG--KTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRT 304
T+I+E V+D + D + + P ++ A+A QRRGR GR
Sbjct: 240 TTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRN 297
Score = 37.1 bits (86), Expect = 0.010
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 53 RKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
P Y++ + D+ R ++T++ G+G
Sbjct: 3 AMGEPDYEVDE---DIFRKKRLTIMDLHPGAG 31
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 115 bits (290), Expect = 6e-28
Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 13/118 (11%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
+ F+P N + + S ++I L + + V+
Sbjct: 358 TVWFVPSIKAGNDIANCL------RKSGKRVIQLSRKT----FDTEYPKTKLTDWDFVVT 407
Query: 249 TNIAETSITIDDIVYVVDCG--KTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRT 304
T+I+E V+D + D + + P ++ A+A QRRGR GR
Sbjct: 408 TDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRN 464
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 115 bits (290), Expect = 7e-28
Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 13/118 (11%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
+ F+ N + + + + ++I L+ + + G V+
Sbjct: 413 TVWFVASVKMSNEIAQCL------QRAGKRVIQLNRKS----YDTEYPKCKNGDWDFVIT 462
Query: 249 TNIAETSITIDDIVYVVDCG--KTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRT 304
T+I+E V+DC + + + P I+ A+A QRRGR GR
Sbjct: 463 TDISEMGANF-GASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRN 519
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 113 bits (285), Expect = 1e-27
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 13/118 (11%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
+ F+ N + + + ++I L+ + + G V+
Sbjct: 193 TVWFVASVKMGNEIAMCL------QRAGKKVIQLNRKS----YDTEYPKCKNGDWDFVIT 242
Query: 249 TNIAETSITIDDIVYVVDCGK--TKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRT 304
T+I+E V+DC K + + + P I+ A+A QRRGR GR
Sbjct: 243 TDISEMGANF-GASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRN 299
Score = 39.8 bits (93), Expect = 0.002
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 60 QMRDAVLDMVRNNQITVISGETGSG 84
QM +M+R Q+TV+ GSG
Sbjct: 9 QMGRGSPNMLRKRQMTVLDLHPGSG 33
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 113 bits (283), Expect = 2e-27
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 12/117 (10%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
FLP N + S+ ++ ++ L+ +I + +LA
Sbjct: 180 TAWFLPSIRAANVMAASLRKAGK------SVVVLNRKTFEREYPTI----KQKKPDFILA 229
Query: 249 TNIAETSITIDDIVYVVDCGKTKMSNFDVKDN-IATLKPEWISLANAKQRRGRAGRT 304
T+IAE + + V+DC + +A P IS ++A QRRGR GR
Sbjct: 230 TDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRN 285
Score = 29.4 bits (66), Expect = 2.7
Identities = 4/22 (18%), Positives = 5/22 (22%)
Query: 344 TQRPGAILVFLPGWDTINSLHR 365
FLP N +
Sbjct: 174 LADKRPTAWFLPSIRAANVMAA 195
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 108 bits (271), Expect = 2e-25
Identities = 24/140 (17%), Positives = 41/140 (29%), Gaps = 17/140 (12%)
Query: 190 LVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLAT 249
L+F + L + + + + L P +V+AT
Sbjct: 400 LIFCHSKKKCDELAAKL------SGLGINAVAYYRGLDVSVI-------PTIGDVVVVAT 446
Query: 250 NIAETSITIDDIVYVVDCGKTKMSNFDVKDN---IATLKPEWISLANAKQRRGRAGRTLK 306
+ T T D V+DC D + + QRRGR GR +
Sbjct: 447 DALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRR 505
Query: 307 RSETQQYPNDVLNMLKDPEL 326
P + + + D +
Sbjct: 506 GIYRFVTPGERPSGMFDSSV 525
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural
genomics, structural genomics consortium, SGC,
activator, ATP-binding, DNA-binding; HET: ADP; 2.80A
{Homo sapiens}
Length = 235
Score = 75.0 bits (185), Expect = 1e-15
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 4 PHSPKGLTHSVTSWETRQKLLNDPVLDAAFKKEMIRKLQ-SRRYQEMLEARKKLPSYQMR 62
P S S E + K E++ +L+ Q +L+ R+ LP +
Sbjct: 7 PQSNWNPWTSSNIDEGPLAFATPEQISMDLKNELMYQLEQDHDLQAILQERELLPVKKFE 66
Query: 63 DAVLDMVRNNQITVISGETGSG 84
+L+ + N + +I G TG G
Sbjct: 67 SEILEAISQNSVVIIRGATGCG 88
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.9 bits (168), Expect = 2e-12
Identities = 83/492 (16%), Positives = 145/492 (29%), Gaps = 154/492 (31%)
Query: 12 HSVTSWETRQKLLNDPVLDAAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRN 71
H++ + KLL + KE+I+ + A++ A+ V
Sbjct: 102 HALAA-----KLLQENDTTLVKTKELIKNY----ITARIMAKRPFDKKS-NSALFRAVGE 151
Query: 72 NQITVIS--GETGSG----------------PPLHLDFI-----TLKR------SETQQY 102
+++ G G G L D I TL + +
Sbjct: 152 GNAQLVAIFG--GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 103 PN--DVLNMLKDPELEGVNNDVI----FSL-LQHICTTQRPGAILVYCTYTFMGVSPMKV 155
++L L++P + D + S L I Q +V +G +P
Sbjct: 210 TQGLNILEWLENPSNTP-DKDYLLSIPISCPL--IGVIQL-AHYVVTAKL--LGFTP--- 260
Query: 156 FFCKNVLQRL--MKGVGANSPKRWVKLLRSMLVVPILVFLPG-WDTINSLHRSMCQSSFF 212
+ L G LV + + W++ R FF
Sbjct: 261 ---GELRSYLKGATGHSQG------------LVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 213 NSSRFQ-IIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTK 271
R P S+ P++ + S+ N EGV +L+ + + + +
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENN--EGVPSPMLS---------------ISNLTQEQ 348
Query: 272 MSNFDVKDNIATLKPE---WISLANAKQRRGRAG--RTLKRSETQQYPNDVLNMLKDPEL 326
+ ++ K N + L ISL N + +G ++L L K P
Sbjct: 349 VQDYVNKTN-SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT------LRKAKAP-- 399
Query: 327 EGVN-NDVIFSLLQHICTTQR-PGAILVFLPGWDTINSLHRSMCQSSFFNSCLL---YEF 381
G++ + + FS +R FLP + +S F+S LL +
Sbjct: 400 SGLDQSRIPFS--------ERKLKFSNRFLP----V---------ASPFHSHLLVPASDL 438
Query: 382 AMVDNKPKEI--------ITVRD--------CLSFECKPSTAKIIKELRARLDMLLAHKL 425
D + I V D LS I L + + K
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 426 SH-----PGTTA 432
+H PG +
Sbjct: 499 THILDFGPGGAS 510
Score = 45.4 bits (107), Expect = 4e-05
Identities = 54/309 (17%), Positives = 101/309 (32%), Gaps = 101/309 (32%)
Query: 47 QE--M-LEARKKLPSYQ---------MRDA----VLDMVRNN--QITVISGETGSGPPLH 88
QE M ++ K + Q +D +LD+V NN +T+ G G +
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-GKRIR 1685
Query: 89 LDFITLKRSETQQYPNDVLNMLKDPELEGVNNDVIFS----LLQHICT--TQRPGAILV- 141
++ + + K E+ + F LL T TQ P A+ +
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFK--EINEHSTSYTFRSEKGLLSA--TQFTQ-P-ALTLM 1739
Query: 142 -YCTYTFM---GVSPMKVFFCKNVLQRLMKG--VG--------AN--SPKRWVKLL--RS 183
+ + G+ P F G +G A+ S + V+++ R
Sbjct: 1740 EKAAFEDLKSKGLIPADATFA---------GHSLGEYAALASLADVMSIESLVEVVFYRG 1790
Query: 184 MLV---VPILVFLPGWDTINSLHRSMCQSSFFNSSR----FQIIPLHSMLPTVSQKS--- 233
M + VP D + + M N R F L ++ V +++
Sbjct: 1791 MTMQVAVPR-------DELGRSNYGMIA---INPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 234 --I--FNTPPEGVRKIVLA-TNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLK-PE 287
I +N + + V A A +D + V++ K + I ++ +
Sbjct: 1841 VEIVNYNVENQ---QYVAAGDLRA-----LDTVTNVLNFIKLQ--------KIDIIELQK 1884
Query: 288 WISLANAKQ 296
+SL +
Sbjct: 1885 SLSLEEVEG 1893
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.0 bits (160), Expect = 1e-11
Identities = 83/505 (16%), Positives = 158/505 (31%), Gaps = 175/505 (34%)
Query: 18 ETRQKLLNDPVLDAAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVI 77
E R +L ND ++ K R Q L+ R+ L ++R + +I
Sbjct: 114 EQRDRLYNDN--------QVFAKYNVSRLQPYLKLRQAL--LELRP--------AKNVLI 155
Query: 78 SGETGSGPPLHLDFITLKRSETQQYPNDVLNMLKDPELEGVNNDVIF------------- 124
G GSG K L++ +++ + IF
Sbjct: 156 DGVLGSG----------KTWV-------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 125 -SLLQHICTTQRPGAILVYCTYTFMGVS-PMKVFFCKNVLQRLMKGVGANSPKRWVKLLR 182
+LQ + P + + + + +++ + L+RL+K
Sbjct: 199 LEMLQKLLYQIDPN----WTSRSDHSSNIKLRIHSIQAELRRLLK---------SKPYEN 245
Query: 183 SMLVVPIL--VFLPGWD--TINSLHRSMCQ----------SSFFNSSRFQIIPLHSMLPT 228
+L +L V + N+ + S C+ + F +++ I L T
Sbjct: 246 CLL---VLLNV----QNAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 229 VSQ---KSIF----NTPPEGVRKIVLATN------IAETSITIDDIVYVVDCGKTKMSNF 275
++ KS+ + P+ + + VL TN IAE+
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES--------------------- 336
Query: 276 DVKDNIATLKPEWISLANAKQRRGRAG--RTLKRSETQQY-------------PNDVLNM 320
++D +AT W + K L+ +E ++ P +L++
Sbjct: 337 -IRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 321 L------KDPELEGVNNDVIFSLLQHICTTQRPGAILVFLPG--------WDTINSLHRS 366
+ D + VN +SL++ ++P + +P + +LHRS
Sbjct: 395 IWFDVIKSDVMVV-VNKLHKYSLVE-----KQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 367 MCQSSFFNSCLLYEFAMVDNKPKEIITVRDCLSFE------CKPSTAKIIKELRAR-LDM 419
+ Y + I D + + + R LD
Sbjct: 449 IVDH--------YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 420 -LLAHKLSHPGTTAWGDPNEGNILH 443
L K+ H TAW G+IL+
Sbjct: 501 RFLEQKIRHDS-TAWNAS--GSILN 522
Score = 27.9 bits (61), Expect = 9.9
Identities = 24/158 (15%), Positives = 44/158 (27%), Gaps = 39/158 (24%)
Query: 7 PKGLTHSVTS--WETRQKLLNDPVLDAAFKKEMIRKLQSRR----------------YQ- 47
PK T S+ S E + KL N+ L + ++ + Y
Sbjct: 421 PKESTISIPSIYLELKVKLENEYAL----HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 48 ---EMLEARKKLPSYQMRDAVLDM--VRNNQITVISGETGSGPPLHL--------DFITL 94
+ R LD + + SG L+ +I
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 95 KRSETQQYPNDVLNMLKDPE---LEGVNNDVIFSLLQH 129
+ ++ N +L+ L E + D++ L
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.6 bits (89), Expect = 0.002
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 16/62 (25%)
Query: 13 SVTSW-ETRQKLLNDPVLDAAFKK---EMIRKLQS------RRYQEMLEARKKLPSYQMR 62
S+ W E ++K L + LDAA K E K + +R E +E K R
Sbjct: 86 SIRKWREEQRKRLQE--LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI----NNR 139
Query: 63 DA 64
A
Sbjct: 140 IA 141
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.32
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 31/57 (54%)
Query: 34 KKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLD 90
+K+ ++KLQ+ L KL Y S P L +
Sbjct: 18 EKQALKKLQAS-----L----KL--Y--------------------ADDSAPALAIK 43
Score = 29.1 bits (64), Expect = 2.0
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 10/27 (37%)
Query: 410 IKELRARLDMLLAHKLSHPGTTAWGDP 436
+K+L+A L KL + P
Sbjct: 22 LKKLQASL------KLYADDSA----P 38
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI,
protein structure initiative, midwest center for struc
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
c.124.1.2 c.124.1.2
Length = 497
Score = 31.7 bits (72), Expect = 0.47
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 49 MLEARKKLPSYQMR-----DAVLDMVRNNQITVISGETGSGPPLHLD 90
M R +LPS + +A D++++ +SG T +G +
Sbjct: 1 MYRDRVRLPSLLDKVMSAAEAA-DLIQDGMTVGMSGFTRAGEAKAVP 46
>1yx0_A Hypothetical protein YSNE; NESG, GFT structral genomics, SR220,
structural genomics, PSI, protein structure initiative;
NMR {Bacillus subtilis subsp} SCOP: d.108.1.1
Length = 159
Score = 29.0 bits (65), Expect = 2.1
Identities = 10/64 (15%), Positives = 23/64 (35%)
Query: 25 NDPVLDAAFKKEMIRKLQSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSG 84
++ A K+ R + + + +K + Q+ +++ +S ETGS
Sbjct: 55 DELAGCGALKELDTRHGEIKSMRTSASHLRKGVAKQVLQHIIEEAEKRGYERLSLETGSM 114
Query: 85 PPLH 88
Sbjct: 115 ASFE 118
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 28.6 bits (64), Expect = 3.9
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 13/51 (25%)
Query: 332 DVIFS------------LLQHICTTQRPGAILVF-LPGWDTINSLHRSMCQ 369
D +FS + I + G V G I + ++
Sbjct: 119 DAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYN 169
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study,
celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Length = 741
Score = 29.1 bits (66), Expect = 3.9
Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 6/26 (23%)
Query: 417 LDMLLAHKLSHPGTTAW----GDPNE 438
+DML + W G P +
Sbjct: 602 MDMLRFDQF--TAGRYWVDDYGYPEK 625
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine
adenylyltransferase catalysis, transferase; HET: NMN;
1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A
1nus_A* 1nut_A* 1nuu_A*
Length = 252
Score = 28.3 bits (63), Expect = 4.8
Identities = 8/57 (14%), Positives = 13/57 (22%)
Query: 309 ETQQYPNDVLNMLKDPELEGVNNDVIFSLLQHICTTQRPGAILVFLPGWDTINSLHR 365
VL L + + +T L L G D + +
Sbjct: 88 AQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLKTFQT 144
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell
membrane, copper transport, hydrolase, ION transport,
magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus
fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Length = 287
Score = 28.2 bits (64), Expect = 5.0
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 381 FAMVDNKPKEIITVRDCLSFECKPSTAKIIKELRAR 416
+ + + II V D L K S ++EL+
Sbjct: 147 IVARNGRVEGIIAVSDTL----KESAKPAVQELKRM 178
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy
metal translocation; 2.20A {Sulfolobus solfataricus}
PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Length = 263
Score = 28.2 bits (64), Expect = 5.8
Identities = 4/36 (11%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 381 FAMVDNKPKEIITVRDCLSFECKPSTAKIIKELRAR 416
++ +P + D +P+ +++L+
Sbjct: 120 AVYINGEPIASFNISDVP----RPNLKDYLEKLKNE 151
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell
regulator protein, cryptospo parvum, structural
genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP:
a.118.7.1
Length = 227
Score = 28.0 bits (62), Expect = 6.2
Identities = 11/133 (8%), Positives = 33/133 (24%), Gaps = 29/133 (21%)
Query: 42 QSRRYQEMLEARKKLPSYQMRDAVLDMVRNNQITVISGETGSGPPLHLDFITLKRSETQQ 101
+ +M EA K L + + + + + L+ Q
Sbjct: 18 WGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQL 77
Query: 102 YPNDVLNMLKDP------ELEGVNNDVIFSLLQHICTTQRPGAILVYCTYTFMGVSPMKV 155
++++ + + +++ + + + + K
Sbjct: 78 NNDELVKICSEYVFSLRKDIKAFLQSFEDCVDRLVEKS-----------------FFSKF 120
Query: 156 FFCKNVLQRLMKG 168
F K +K
Sbjct: 121 FKLK------VKS 127
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 28.4 bits (62), Expect = 6.4
Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 11/107 (10%)
Query: 201 SLHRSMCQSSFFNSSRFQIIPLHSMLP---TVSQKSIFNTPPEGVRKIVLATNIAE-TSI 256
S + S + ++ LP ++Q FN P + + +V I ++
Sbjct: 329 SKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL 388
Query: 257 TIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGR 303
+I I++ + + + + E I+ + A Q GRAGR
Sbjct: 389 SIRRIIF------YSLIKPSINEKGER-ELEPITTSQALQIAGRAGR 428
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 28.3 bits (64), Expect = 6.7
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 19/70 (27%)
Query: 240 EGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNFDV-KDNIATLKPEW----ISLANA 294
G K+++ TN+ I + + VV N+D+ D P+ I
Sbjct: 405 VGTSKVLVTTNVIARGIDVSQVNLVV--------NYDMPLDQAGRPDPQTYLHRIG---- 452
Query: 295 KQRRGRAGRT 304
R GR GR
Sbjct: 453 --RTGRFGRV 460
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 28.3 bits (64), Expect = 7.2
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 381 FAMVDNKPKEIITVRDCLSFECKPSTAKIIKELRAR 416
F VD K ++ V D + K ST + I EL+
Sbjct: 538 FMAVDGKTVALLVVEDPI----KSSTPETILELQQS 569
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 27.9 bits (63), Expect = 7.5
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 126 LLQHICTTQRPGAILVYCT 144
+L I + G LVY T
Sbjct: 356 ILDAIWPHLKTGGTLVYAT 374
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
copper(II) transporter, MEMB protein, hydrolase; 1.59A
{Archaeoglobus fulgidus} PDB: 3sky_A*
Length = 280
Score = 27.4 bits (62), Expect = 9.6
Identities = 7/36 (19%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 381 FAMVDNKPKEIITVRDCLSFECKPSTAKIIKELRAR 416
F + + + +I + D + +P + + I +L+A
Sbjct: 128 FILKNGEVSGVIALADRI----RPESREAISKLKAI 159
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.409
Gapped
Lambda K H
0.267 0.0482 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,944,620
Number of extensions: 411207
Number of successful extensions: 1080
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1046
Number of HSP's successfully gapped: 47
Length of query: 455
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 358
Effective length of database: 3,993,456
Effective search space: 1429657248
Effective search space used: 1429657248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.1 bits)