RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6094
(455 letters)
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 93.1 bits (231), Expect = 9e-22
Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 12/121 (9%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLA 248
FLP N + S+ ++ ++ L+ +I P +LA
Sbjct: 39 TAWFLPSIRAANVMAASLRKAGK------SVVVLNRKTFEREYPTIKQKKP----DFILA 88
Query: 249 TNIAETSITIDDIVYVVDCGKT-KMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKR 307
T+IAE + + V+DC K D +A P IS ++A QRRGR GR R
Sbjct: 89 TDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR 147
Query: 308 S 308
Sbjct: 148 D 148
Score = 29.2 bits (65), Expect = 1.1
Identities = 4/22 (18%), Positives = 5/22 (22%)
Query: 344 TQRPGAILVFLPGWDTINSLHR 365
FLP N +
Sbjct: 33 LADKRPTAWFLPSIRAANVMAA 54
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 69.6 bits (169), Expect = 8e-14
Identities = 35/295 (11%), Positives = 75/295 (25%), Gaps = 60/295 (20%)
Query: 67 DMVRNNQITVISGETGSG------PPLHLDFITLKR-----SETQQYPNDVLNMLKDPEL 115
D+ R ++T++ G+G P + + I + T+ ++ L+ +
Sbjct: 4 DIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPI 63
Query: 116 EGVNNDVIFSLLQHICTTQRPGAILV----------------------YCTYTFMGVSPM 153
+ A + +
Sbjct: 64 RYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYI 123
Query: 154 KVFFCKNVLQRLMKGVGANSPKRWVKLLRSMLVVPILVFLPGWDTINSLHRSMCQ----- 208
+ + A P +S + + NS H +
Sbjct: 124 STRVEMGEAAGIF--MTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKT 181
Query: 209 -------------SSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETS 255
++ + ++I L V+ T+I+E
Sbjct: 182 VWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTND----WDFVVTTDISEMG 237
Query: 256 ITIDDIVYVVDCG--KTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRTLKRS 308
V+D + D ++ + P ++ ++A QRRGR GR K
Sbjct: 238 ANF-KAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNE 291
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 31.8 bits (72), Expect = 0.15
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 19/66 (28%)
Query: 240 EGVRKIVLATNIAETSITIDDI--VYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQR 297
G V+ N T + + ++ + + + QR
Sbjct: 94 TGDFDSVIDCNTCVTQTVDFSLDPTFTIE-------TTTLPQDAVSRT----------QR 136
Query: 298 RGRAGR 303
RGR GR
Sbjct: 137 RGRTGR 142
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 30.7 bits (68), Expect = 0.28
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 11/88 (12%)
Query: 216 RFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATNIAETSITIDDIVYVVDCGKTKMSNF 275
R H+ L ++ + + G K+V+AT + + V+ +
Sbjct: 94 RKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPAR-RVIVRSLYRFDG- 151
Query: 276 DVKDNIATLKPEWISLANAKQRRGRAGR 303
+ I ++ KQ GRAGR
Sbjct: 152 ---------YSKRIKVSEYKQMAGRAGR 170
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 30.3 bits (67), Expect = 0.50
Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 22/119 (18%)
Query: 189 ILVFLPGWDTINSLHRSMCQSSFFNSSRF---QIIPLHSMLPTVSQKSIFNTPPEGVRKI 245
I+VF +T + + RF L QK I + G +
Sbjct: 164 IIVFTNYRETAK-KIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNV 222
Query: 246 VLATNIAETSITIDDIVYVVDCGKTKMSNFDVKDNIATLKPEWISLANAKQRRGRAGRT 304
++AT++ E + + ++ VV ++ + QRRGR GR
Sbjct: 223 LVATSVGEEGLDVPEVDLVV--------FYEPVPSAIRSI----------QRRGRTGRH 263
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 29.3 bits (64), Expect = 0.51
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 67 DMVRNNQITVISGETGSG 84
M++ TV+ G+G
Sbjct: 2 HMLKKGMTTVLDFHPGAG 19
>d2etja1 c.55.3.1 (A:1-221) Class II ribonuclease H (RNase HII)
{Thermotoga maritima [TaxId: 2336]}
Length = 221
Score = 28.5 bits (63), Expect = 1.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 16 SWETRQKLLNDPVLDAAFKKEMIRKLQSRRYQEMLEAR 53
S+E +LL D +L F+K +I + + R +L AR
Sbjct: 184 SFEPVLELLTDDLLREFFEKGLISENRFERILNLLGAR 221
>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 70
Score = 26.7 bits (59), Expect = 1.3
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 8 KGLTHSVTSWETRQKLLNDPVLDAAFKKEMIRKLQSR 44
+ +WE + L + A +K+ R S
Sbjct: 33 LNYSSRSDTWEPPENLSGCSAVLAEWKRRKRRLKGSN 69
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 27.7 bits (61), Expect = 3.2
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 62 RDAVLDMVRN--NQITVISGETGSG 84
DA M ++ NQ +ISGE+G+G
Sbjct: 74 NDAYRSMRQSQENQCVIISGESGAG 98
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 27.4 bits (60), Expect = 4.0
Identities = 7/25 (28%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 62 RDAVLDMVRN--NQITVISGETGSG 84
A M+++ +Q + +GE+G+G
Sbjct: 79 DTAYRSMLQDREDQSILCTGESGAG 103
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 26.4 bits (57), Expect = 4.2
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 68 MVRNNQITVISGETGSG 84
+ ++ Q+ + TGSG
Sbjct: 4 VPQSFQVAHLHAPTGSG 20
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 27.4 bits (60), Expect = 4.5
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 62 RDAVLDMVRN--NQITVISGETGSG 84
+A +MV + NQ +I+GE+G+G
Sbjct: 109 DNAYQNMVTDRENQSCLITGESGAG 133
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 27.4 bits (60), Expect = 5.1
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 63 DAVLDMVRN--NQITVISGETGSG 84
+A M+ + NQ +I+GE+G+G
Sbjct: 112 NAYQFMLTDRENQSILITGESGAG 135
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 26.4 bits (57), Expect = 5.8
Identities = 35/222 (15%), Positives = 75/222 (33%), Gaps = 20/222 (9%)
Query: 74 ITVISGETGSGPPLHLDFITLKRSETQQYP---NDVLNMLKDPELEGVNNDVIFSLLQHI 130
+T+++G G+G L I L + N+ + D +L G I +L
Sbjct: 5 VTLLTGFLGAGKTTLLRHI-LNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGC 63
Query: 131 CTTQRPGAILVYCTYTFMGVSPMKVFFCKNVLQRLMKGVGANSPKRWVKLLRSMLVVPIL 190
R + + + F + V++ G P ++ S V+
Sbjct: 64 ICCSRSNELEDALLDLLDNLDKGNIQFDRLVIEC----TGMADPGPIIQTFFSHEVLCQR 119
Query: 191 VFLPGWDTINSLHRSMCQSSFFNSSRFQIIPLHSMLPTVSQKSIFNTPPEGVRKIVLATN 250
L G + + Q + F ++ Q+ +L T + E + + + N
Sbjct: 120 YLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDV---AGEAEKLHERLARIN 176
Query: 251 IAETSITID----DIVYVVDCGKTKMSNFDVKDNIATLKPEW 288
T+ D+ + + F +++N+ + KP +
Sbjct: 177 ARAPVYTVTHGDIDLGLLFNTNG-----FMLEENVVSTKPRF 213
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 27.0 bits (59), Expect = 6.8
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 62 RDAVLDMVRN--NQITVISGETGSG 84
A M+ + NQ +I+GE+G+G
Sbjct: 113 DVAYRSMLDDRQNQSLLITGESGAG 137
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 26.3 bits (57), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 62 RDAVLDMVRN--NQITVISGETGSG 84
+A M R+ NQ ++SGE+G+G
Sbjct: 82 EEAYKQMARDERNQSIIVSGESGAG 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.409
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,712,454
Number of extensions: 80635
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 21
Length of query: 455
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 367
Effective length of database: 1,199,356
Effective search space: 440163652
Effective search space used: 440163652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.3 bits)