Query psy6097
Match_columns 167
No_of_seqs 109 out of 1155
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 17:30:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01657 P-ATPase-V P-type AT 100.0 3.5E-34 7.5E-39 262.2 19.4 153 1-155 152-324 (1054)
2 TIGR01647 ATPase-IIIA_H plasma 100.0 6.6E-34 1.4E-38 253.1 17.4 154 1-158 14-171 (755)
3 TIGR01523 ATPase-IID_K-Na pota 100.0 2.2E-33 4.9E-38 256.1 18.2 156 1-158 39-212 (1053)
4 KOG0208|consensus 100.0 2.7E-33 5.9E-38 245.5 16.7 163 1-164 173-354 (1140)
5 TIGR01522 ATPase-IIA2_Ca golgi 100.0 1.8E-32 3.8E-37 247.5 18.7 156 1-158 37-210 (884)
6 PRK10517 magnesium-transportin 100.0 3.7E-32 8.1E-37 245.2 19.4 157 1-158 80-257 (902)
7 TIGR01524 ATPase-IIIB_Mg magne 100.0 5.1E-32 1.1E-36 243.9 19.4 156 1-158 46-223 (867)
8 TIGR01517 ATPase-IIB_Ca plasma 100.0 5.9E-32 1.3E-36 245.4 19.1 156 1-158 73-247 (941)
9 PRK15122 magnesium-transportin 100.0 3.1E-31 6.6E-36 239.4 20.0 157 1-158 58-256 (903)
10 TIGR01106 ATPase-IIC_X-K sodiu 100.0 9.3E-31 2E-35 238.5 18.6 156 1-158 49-230 (997)
11 KOG0202|consensus 100.0 2.2E-31 4.7E-36 231.1 6.6 157 1-159 36-209 (972)
12 COG0474 MgtA Cation transport 100.0 1.4E-29 3E-34 229.0 14.1 156 1-158 57-233 (917)
13 TIGR01116 ATPase-IIA1_Ca sarco 100.0 1.5E-27 3.4E-32 216.1 16.3 140 17-158 1-165 (917)
14 KOG0205|consensus 99.9 1.5E-28 3.3E-33 209.0 5.4 153 1-157 49-212 (942)
15 KOG0204|consensus 99.9 5.5E-28 1.2E-32 210.1 7.0 154 1-157 132-300 (1034)
16 KOG0209|consensus 99.9 1.2E-26 2.6E-31 201.2 14.4 159 1-160 176-353 (1160)
17 TIGR01512 ATPase-IB2_Cd heavy 99.9 1E-25 2.2E-30 194.3 15.1 127 28-158 4-133 (536)
18 PRK14010 potassium-transportin 99.9 5.6E-25 1.2E-29 192.7 15.6 136 19-158 28-186 (673)
19 TIGR01525 ATPase-IB_hvy heavy 99.9 5.6E-25 1.2E-29 190.5 15.0 129 27-158 3-134 (556)
20 PF00122 E1-E2_ATPase: E1-E2 A 99.9 4.6E-25 9.9E-30 171.1 12.1 107 48-158 2-118 (230)
21 PRK01122 potassium-transportin 99.9 2.7E-24 5.8E-29 188.6 17.4 137 18-158 28-186 (679)
22 TIGR01511 ATPase-IB1_Cu copper 99.9 2.7E-24 5.9E-29 186.4 15.0 115 41-158 53-170 (562)
23 TIGR01497 kdpB K+-transporting 99.9 7.8E-24 1.7E-28 185.4 17.1 138 18-158 27-187 (675)
24 PRK11033 zntA zinc/cadmium/mer 99.9 4.1E-24 8.8E-29 190.2 14.6 127 27-157 191-320 (741)
25 COG2217 ZntA Cation transport 99.9 1.1E-23 2.4E-28 185.1 14.3 112 42-156 174-288 (713)
26 TIGR01652 ATPase-Plipid phosph 99.9 1.7E-23 3.7E-28 192.2 13.7 135 1-137 1-150 (1057)
27 PRK10671 copA copper exporting 99.9 6E-23 1.3E-27 185.0 16.4 114 41-158 285-401 (834)
28 KOG0203|consensus 99.9 3.4E-22 7.3E-27 174.1 5.3 154 2-159 72-253 (1019)
29 TIGR01494 ATPase_P-type ATPase 99.8 3.4E-21 7.4E-26 165.0 9.9 104 50-158 4-112 (499)
30 PLN03190 aminophospholipid tra 99.8 1.9E-20 4.2E-25 172.7 14.8 134 1-137 87-235 (1178)
31 KOG0207|consensus 99.8 3E-20 6.6E-25 163.4 9.4 103 51-157 350-456 (951)
32 COG2216 KdpB High-affinity K+ 99.6 5.9E-16 1.3E-20 129.9 9.1 110 42-155 62-183 (681)
33 KOG0210|consensus 99.6 2.6E-14 5.6E-19 123.5 12.0 156 1-158 79-293 (1051)
34 KOG0206|consensus 99.5 6.9E-14 1.5E-18 127.7 7.1 135 1-137 32-180 (1151)
35 smart00831 Cation_ATPase_N Cat 98.3 1.7E-06 3.7E-11 54.0 5.1 39 1-39 23-62 (64)
36 PF00690 Cation_ATPase_N: Cati 98.2 1.6E-06 3.5E-11 55.0 4.1 36 1-36 33-69 (69)
37 KOG4383|consensus 93.6 0.15 3.2E-06 45.9 5.2 39 79-119 159-197 (1354)
38 PF03120 DNA_ligase_OB: NAD-de 86.3 0.37 8E-06 31.6 1.1 23 89-111 44-66 (82)
39 PRK11507 ribosome-associated p 85.5 1.6 3.6E-05 27.6 3.7 27 80-109 39-65 (70)
40 KOG0210|consensus 81.2 14 0.00031 33.8 9.0 93 10-105 95-203 (1051)
41 PF12791 RsgI_N: Anti-sigma fa 80.3 4.5 9.8E-05 24.0 4.1 34 77-111 7-41 (56)
42 COG0272 Lig NAD-dependent DNA 79.0 1 2.2E-05 40.3 1.3 29 90-118 363-392 (667)
43 PF13275 S4_2: S4 domain; PDB: 75.7 2.4 5.2E-05 26.5 2.0 23 80-103 35-57 (65)
44 PF15584 Imm44: Immunity prote 70.6 1.8 3.9E-05 28.9 0.6 18 98-116 14-31 (94)
45 PF06251 Caps_synth_GfcC: Caps 70.3 3.5 7.6E-05 32.0 2.2 35 77-111 168-209 (229)
46 PRK14350 ligA NAD-dependent DN 67.9 2.2 4.7E-05 38.6 0.6 27 90-116 360-387 (669)
47 COG2501 S4-like RNA binding pr 67.4 14 0.00029 23.7 4.0 29 79-110 38-66 (73)
48 smart00532 LIGANc Ligase N fam 66.1 2.7 5.8E-05 36.1 0.9 23 90-112 358-380 (441)
49 COG1188 Ribosome-associated he 65.3 9 0.00019 26.0 3.1 34 80-117 36-69 (100)
50 cd00210 PTS_IIA_glc PTS_IIA, P 65.2 23 0.0005 25.0 5.3 33 121-155 70-102 (124)
51 PRK07956 ligA NAD-dependent DN 63.2 3 6.5E-05 37.7 0.6 27 90-116 363-390 (665)
52 COG4043 Preprotein translocase 62.4 11 0.00023 25.7 3.0 24 92-117 31-54 (111)
53 PF01455 HupF_HypC: HupF/HypC 62.0 31 0.00066 21.6 4.9 31 77-109 18-51 (68)
54 PRK15175 Vi polysaccharide exp 59.5 18 0.0004 30.2 4.6 39 77-116 199-247 (355)
55 COG1465 Predicted alternative 57.8 6.7 0.00015 32.0 1.7 38 68-108 323-360 (376)
56 PRK08097 ligB NAD-dependent DN 57.7 6.2 0.00013 35.0 1.6 23 90-112 355-377 (562)
57 PRK14351 ligA NAD-dependent DN 57.5 4.8 0.0001 36.5 0.9 28 90-117 385-413 (689)
58 smart00306 HintN Hint (Hedgeho 56.1 15 0.00032 23.8 2.9 19 85-103 80-98 (100)
59 PRK04980 hypothetical protein; 55.5 26 0.00056 23.9 4.0 28 92-120 29-58 (102)
60 TIGR00575 dnlj DNA ligase, NAD 55.3 5.4 0.00012 36.0 0.9 22 90-111 351-372 (652)
61 TIGR01517 ATPase-IIB_Ca plasma 54.6 2E+02 0.0042 27.3 12.2 141 12-160 89-255 (941)
62 TIGR00830 PTBA PTS system, glu 54.5 46 0.00099 23.3 5.3 33 121-155 70-102 (121)
63 COG5038 Ca2+-dependent lipid-b 54.4 59 0.0013 31.5 7.3 40 17-56 150-189 (1227)
64 PRK02290 3-dehydroquinate synt 53.8 15 0.00032 30.6 3.1 32 71-105 294-325 (344)
65 PF07591 PT-HINT: Pretoxin HIN 49.9 14 0.0003 26.1 2.1 27 88-115 70-96 (130)
66 PF01959 DHQS: 3-dehydroquinat 48.5 19 0.00042 30.0 3.0 31 72-105 305-335 (354)
67 PF06820 Phage_fiber_C: Putati 46.6 27 0.00058 21.3 2.6 31 95-126 5-36 (64)
68 PRK09439 PTS system glucose-sp 45.0 80 0.0017 23.5 5.6 55 97-153 47-122 (169)
69 TIGR01652 ATPase-Plipid phosph 42.9 1.5E+02 0.0033 28.4 8.4 35 85-120 107-144 (1057)
70 PRK14715 DNA polymerase II lar 41.1 21 0.00045 35.0 2.3 27 77-104 989-1015(1627)
71 cd06555 ASCH_PF0470_like ASC-1 41.1 84 0.0018 21.6 4.8 33 77-115 19-54 (109)
72 PF00358 PTS_EIIA_1: phosphoen 40.9 51 0.0011 23.4 3.9 57 96-154 28-105 (132)
73 PF10162 G8: G8 domain; Inter 40.8 80 0.0017 22.0 4.8 7 146-152 95-101 (125)
74 TIGR02988 YaaA_near_RecF S4 do 40.7 35 0.00077 20.2 2.7 33 67-103 26-58 (59)
75 PRK06033 hypothetical protein; 40.3 31 0.00067 22.5 2.5 12 92-103 25-36 (83)
76 PF14168 YjzC: YjzC-like prote 39.1 45 0.00098 20.2 2.9 26 85-111 17-44 (57)
77 PF09926 DUF2158: Uncharacteri 38.3 23 0.00051 21.1 1.5 13 96-109 2-14 (53)
78 PF03453 MoeA_N: MoeA N-termin 38.1 17 0.00036 26.6 1.0 34 92-126 81-116 (162)
79 PRK08433 flagellar motor switc 37.9 34 0.00073 23.7 2.5 12 92-103 50-61 (111)
80 TIGR02480 fliN flagellar motor 37.9 32 0.0007 21.8 2.3 12 92-103 26-37 (77)
81 TIGR01657 P-ATPase-V P-type AT 37.3 3.9E+02 0.0084 25.8 11.0 34 96-130 235-272 (1054)
82 PF05899 Cupin_3: Protein of u 36.7 42 0.00091 21.0 2.6 26 115-146 30-55 (74)
83 PRK15078 polysaccharide export 36.2 93 0.002 26.2 5.3 47 77-125 212-273 (379)
84 cd00081 Hint Hedgehog/Intein d 35.8 47 0.001 22.7 3.0 26 78-105 74-99 (136)
85 PRK06788 flagellar motor switc 35.3 37 0.00081 23.8 2.4 11 93-103 53-63 (119)
86 TIGR02219 phage_NlpC_fam putat 33.8 24 0.00052 24.9 1.2 17 88-105 70-86 (134)
87 PRK00556 minC septum formation 33.7 72 0.0016 24.4 3.9 31 80-117 99-131 (194)
88 TIGR00074 hypC_hupF hydrogenas 32.8 1.1E+02 0.0024 19.6 4.1 30 77-108 16-48 (76)
89 COG1838 FumA Tartrate dehydrat 32.6 22 0.00048 26.8 0.9 37 92-137 13-53 (184)
90 PTZ00370 STEVOR; Provisional 32.0 1.2E+02 0.0025 24.7 5.0 33 34-66 250-282 (296)
91 COG1018 Hmp Flavodoxin reducta 31.6 37 0.0008 27.1 2.1 33 77-109 69-103 (266)
92 TIGR03214 ura-cupin putative a 31.5 1.3E+02 0.0029 23.7 5.3 59 100-166 183-250 (260)
93 PF13748 ABC_membrane_3: ABC t 31.4 2.6E+02 0.0057 22.1 7.1 43 39-83 136-182 (237)
94 PRK04132 replication factor C 30.8 51 0.0011 30.9 3.1 29 77-106 135-163 (846)
95 PRK11479 hypothetical protein; 30.6 26 0.00057 28.2 1.1 19 88-107 58-76 (274)
96 PF01079 Hint: Hint module; I 30.5 1E+02 0.0022 23.9 4.3 39 77-117 16-55 (217)
97 TIGR01478 STEVOR variant surfa 30.4 1.3E+02 0.0028 24.5 4.9 30 37-66 257-286 (295)
98 PF12148 DUF3590: Protein of u 30.3 24 0.00052 23.2 0.7 17 87-103 58-74 (85)
99 PRK06437 hypothetical protein; 30.1 85 0.0018 19.3 3.2 25 77-103 36-60 (67)
100 cd00887 MoeA MoeA family. Memb 29.7 59 0.0013 27.4 3.1 32 93-125 79-112 (394)
101 PLN03190 aminophospholipid tra 29.5 2E+02 0.0044 28.2 6.9 35 85-120 192-229 (1178)
102 smart00739 KOW KOW (Kyprides, 29.2 74 0.0016 15.2 2.4 14 95-109 2-15 (28)
103 KOG3416|consensus 29.1 37 0.00079 24.1 1.5 16 93-109 60-75 (134)
104 PRK14898 DNA-directed RNA poly 28.5 61 0.0013 30.4 3.2 33 77-113 170-202 (858)
105 PF14257 DUF4349: Domain of un 28.3 2.9E+02 0.0062 21.6 6.7 18 9-26 210-227 (262)
106 KOG2420|consensus 28.0 29 0.00063 28.9 1.0 29 90-118 139-167 (382)
107 PF11431 Transport_MerF: Membr 27.9 77 0.0017 18.3 2.4 21 24-44 2-22 (46)
108 PF01479 S4: S4 domain; Inter 27.6 44 0.00096 18.7 1.5 31 67-101 18-48 (48)
109 PRK10838 spr outer membrane li 27.5 42 0.00091 25.5 1.7 20 88-108 122-141 (190)
110 PRK10680 molybdopterin biosynt 27.4 74 0.0016 27.1 3.4 31 92-123 87-119 (411)
111 PF11133 Phage_head_fibr: Head 26.8 21 0.00046 28.6 0.0 70 80-154 33-102 (277)
112 PRK08983 fliN flagellar motor 26.7 65 0.0014 22.8 2.5 12 92-103 69-80 (127)
113 PF01052 SpoA: Surface present 26.3 50 0.0011 20.6 1.7 15 92-107 26-40 (77)
114 PRK07963 fliN flagellar motor 26.2 66 0.0014 23.1 2.4 12 92-103 78-89 (137)
115 PF13403 Hint_2: Hint domain 26.2 68 0.0015 23.1 2.6 25 89-114 15-39 (147)
116 PF00190 Cupin_1: Cupin; Inte 25.9 96 0.0021 21.8 3.3 16 94-110 87-102 (144)
117 PRK08916 flagellar motor switc 25.2 66 0.0014 22.4 2.2 12 92-103 63-74 (116)
118 PRK10348 ribosome-associated h 25.0 90 0.002 22.3 2.9 28 77-109 35-62 (133)
119 KOG0024|consensus 25.0 43 0.00094 27.8 1.5 15 92-107 80-94 (354)
120 PF06459 RR_TM4-6: Ryanodine R 24.9 59 0.0013 26.2 2.2 11 51-61 181-191 (274)
121 PRK05698 fliN flagellar motor 24.0 76 0.0016 23.3 2.4 11 93-103 98-108 (155)
122 PF04835 Pox_A9: A9 protein co 23.9 1.7E+02 0.0037 17.5 3.8 20 8-27 17-36 (54)
123 COG3768 Predicted membrane pro 23.8 4.3E+02 0.0093 22.0 9.2 14 9-22 59-72 (350)
124 PRK03187 tgl transglutaminase; 23.6 2.5E+02 0.0053 22.7 5.4 26 85-111 156-181 (272)
125 COG0361 InfA Translation initi 23.5 47 0.001 21.3 1.1 10 94-103 46-55 (75)
126 COG3887 Predicted signaling pr 23.4 5.7E+02 0.012 23.3 10.2 24 68-91 77-101 (655)
127 PRK06666 fliM flagellar motor 23.2 2E+02 0.0043 23.5 5.1 40 67-107 250-290 (337)
128 CHL00113 rps4 ribosomal protei 22.9 95 0.0021 23.8 2.9 35 67-106 106-140 (201)
129 PF00877 NLPC_P60: NlpC/P60 fa 22.8 49 0.0011 21.8 1.2 21 85-106 42-62 (105)
130 TIGR03028 EpsE polysaccharide 22.4 83 0.0018 24.4 2.6 23 94-117 150-172 (239)
131 TIGR01017 rpsD_bact ribosomal 21.8 93 0.002 23.7 2.7 60 67-132 107-176 (200)
132 COG1917 Uncharacterized conser 21.5 56 0.0012 22.5 1.3 18 91-109 82-99 (131)
133 PRK05327 rpsD 30S ribosomal pr 21.5 1.1E+02 0.0025 23.3 3.1 61 67-132 110-179 (203)
134 COG1836 Predicted membrane pro 21.4 4E+02 0.0086 21.2 6.0 40 27-66 40-79 (247)
135 cd04451 S1_IF1 S1_IF1: Transla 21.0 2E+02 0.0044 17.2 4.2 11 94-105 40-50 (64)
136 PF09866 DUF2093: Uncharacteri 20.9 58 0.0013 18.4 1.0 18 96-113 3-20 (42)
137 PF00717 Peptidase_S24: Peptid 20.7 1E+02 0.0022 18.3 2.3 11 93-103 23-33 (70)
138 KOG1307|consensus 20.4 2.7E+02 0.0059 24.6 5.3 42 10-54 154-197 (588)
139 COG2323 Predicted membrane pro 20.2 4.3E+02 0.0093 20.6 8.1 43 43-87 61-103 (224)
140 COG0522 RpsD Ribosomal protein 20.1 83 0.0018 24.2 2.1 40 67-111 111-150 (205)
No 1
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=100.00 E-value=3.5e-34 Score=262.18 Aligned_cols=153 Identities=44% Similarity=0.773 Sum_probs=142.1
Q ss_pred CCCCccCCCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCCeE
Q psy6097 1 YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTVDKV 78 (167)
Q Consensus 1 yG~N~i~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~ 78 (167)
||+|+++.+++|+++++++++++||++++++++++|+..+||+++++++++++++.....++++++ +++++....+.+
T Consensus 152 yG~N~i~~~~~s~~~ll~~~~~~p~~i~~i~~~~l~~~~~~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~~~~~v 231 (1054)
T TIGR01657 152 YGKNEIEIPVPSFLELLKEEVLHPFYVFQVFSVILWLLDEYYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVHKPQSV 231 (1054)
T ss_pred cCCCeeecCCCCHHHHHHHHHhchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeE
Confidence 899999999999999999999999999999999999999999999999999999999999999998 888887665689
Q ss_pred EEEecCCeeEEeeCCCcCCCcEEEEcc--CCcEEeeeEEEEeeEEEEeCCcccCCCccccccC----------------C
Q psy6097 79 TVKRSKGLYEEVPTTHLVPGDIIVIPK--HGCTLACDATLLQGNCIVNESMLTVHGALFIMWE----------------D 140 (167)
Q Consensus 79 ~V~r~~g~~~~i~~~~lv~GDii~v~~--~g~~iP~D~~vl~g~~~Vdes~ltGEs~p~~k~~----------------~ 140 (167)
+|+|| |++++++++||+|||+|.+ + +|+.+||||++++|+|.||||+|||||.|+.|.. +
T Consensus 232 ~V~Rd-g~~~~I~s~eLvpGDiv~l-~~~~g~~iPaD~~ll~g~~~VdES~LTGES~Pv~K~~~~~~~~~~~~~~~~~~~ 309 (1054)
T TIGR01657 232 IVIRN-GKWVTIASDELVPGDIVSI-PRPEEKTMPCDSVLLSGSCIVNESMLTGESVPVLKFPIPDNGDDDEDLFLYETS 309 (1054)
T ss_pred EEEEC-CEEEEEEcccCCCCCEEEE-ecCCCCEecceEEEEeCcEEEecccccCCccceecccCCccccccccccccccc
Confidence 99999 9999999999999999999 8 8999999999999999999999999999999932 1
Q ss_pred CcCEEeeccEEEEEE
Q psy6097 141 VNHTLYCGTVILQAR 155 (167)
Q Consensus 141 ~~~~v~aGt~v~~g~ 155 (167)
++|++|+||.+++.+
T Consensus 310 ~~~~lf~GT~v~~~~ 324 (1054)
T TIGR01657 310 KKHVLFGGTKILQIR 324 (1054)
T ss_pred cceEEEcCCEEEEEe
Confidence 356899999999743
No 2
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=6.6e-34 Score=253.05 Aligned_cols=154 Identities=21% Similarity=0.304 Sum_probs=141.4
Q ss_pred CCCCccCCCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCC-Ce
Q psy6097 1 YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTV-DK 77 (167)
Q Consensus 1 yG~N~i~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~-~~ 77 (167)
||+|+++.++++.|.+|+++|++|+.++++++++++++.+.|..+++++++++++..+++++++++ .++++.+.. ++
T Consensus 14 ~G~N~~~~~~~~~~~~~~~~~~~~~~~lL~~aa~~s~~~~~~~~~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~~~ 93 (755)
T TIGR01647 14 YGPNELPEKKVSPLLKFLGFFWNPLSWVMEAAAIIAIALENWVDFVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPK 93 (755)
T ss_pred cCCCCCCCCCCCHHHHHHHHHhchHHHHHHHHHHHHHhhcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 899999988888999999999999999999999999988888889999999999999999999988 455554432 38
Q ss_pred EEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeE-EEEeCCcccCCCccccccCCCcCEEeeccEEEEEEe
Q psy6097 78 VTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN-CIVNESMLTVHGALFIMWEDVNHTLYCGTVILQARY 156 (167)
Q Consensus 78 ~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~-~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g~~ 156 (167)
++|+|| |+++++++++|+|||+|.+ ++||++||||++++|+ +.||||+|||||.|+.| ..++.+|+||.+.+|++
T Consensus 94 ~~V~Rd-g~~~~I~~~~Lv~GDiV~l-~~Gd~IPaDg~vi~g~~~~VDeS~LTGES~PV~K--~~~~~v~aGT~v~~G~~ 169 (755)
T TIGR01647 94 ARVLRD-GKWQEIPASELVPGDVVRL-KIGDIVPADCRLFEGDYIQVDQAALTGESLPVTK--KTGDIAYSGSTVKQGEA 169 (755)
T ss_pred EEEEEC-CEEEEEEhhhCcCCCEEEE-CCCCEEeceEEEEecCceEEEcccccCCccceEe--ccCCeeeccCEEEccEE
Confidence 999999 9999999999999999999 9999999999999997 99999999999999999 89999999999999998
Q ss_pred eC
Q psy6097 157 HG 158 (167)
Q Consensus 157 ~~ 158 (167)
.+
T Consensus 170 ~~ 171 (755)
T TIGR01647 170 EA 171 (755)
T ss_pred EE
Confidence 65
No 3
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=2.2e-33 Score=256.11 Aligned_cols=156 Identities=21% Similarity=0.329 Sum_probs=140.4
Q ss_pred CCCCccCCC-CCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCC-C
Q psy6097 1 YGKNEINVP-IQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTV-D 76 (167)
Q Consensus 1 yG~N~i~~~-~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~-~ 76 (167)
||+|+++.+ ++|+|++|+++|++|+.++++++++++++.++|.++++++++++++..+++++++++ .++++.+.. +
T Consensus 39 ~G~N~l~~~~~~s~~~~~l~q~~~~~~~iL~~aails~~~~~~~~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~ 118 (1053)
T TIGR01523 39 VGENRLEADSGIDAKAMLLHQVCNAMCMVLIIAAAISFAMHDWIEGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASP 118 (1053)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 899999876 579999999999999999999999999999999999999999999999999999998 444443332 3
Q ss_pred eEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEee-EEEEeCCcccCCCccccccC-------------CCc
Q psy6097 77 KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQG-NCIVNESMLTVHGALFIMWE-------------DVN 142 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g-~~~Vdes~ltGEs~p~~k~~-------------~~~ 142 (167)
+++|+|| |++++|+++||||||+|.+ ++||+|||||+++++ ++.||||+|||||.|+.|.. +..
T Consensus 119 ~~~ViRd-g~~~~I~a~eLVpGDIv~L-~~Gd~VPAD~rLi~~~~L~VDES~LTGES~pV~K~~~~~~~~~~~~~~~d~~ 196 (1053)
T TIGR01523 119 MAHVIRN-GKSDAIDSHDLVPGDICLL-KTGDTIPADLRLIETKNFDTDEALLTGESLPVIKDAHATFGKEEDTPIGDRI 196 (1053)
T ss_pred ceEEEeC-CeeeecCHhhCCCCCEEEE-CCCCEeeccEEEEEeCceEEEchhhcCCCCceeccccccccccccCCcccCC
Confidence 8999999 9999999999999999999 899999999999998 69999999999999999932 124
Q ss_pred CEEeeccEEEEEEeeC
Q psy6097 143 HTLYCGTVILQARYHG 158 (167)
Q Consensus 143 ~~v~aGt~v~~g~~~~ 158 (167)
|++|+||.|.+|+|++
T Consensus 197 n~lf~GT~V~~G~g~~ 212 (1053)
T TIGR01523 197 NLAFSSSAVTKGRAKG 212 (1053)
T ss_pred CccccCceEEeeeEEE
Confidence 7899999999999875
No 4
>KOG0208|consensus
Probab=100.00 E-value=2.7e-33 Score=245.55 Aligned_cols=163 Identities=46% Similarity=0.794 Sum_probs=153.9
Q ss_pred CCCCccCCCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCCeE
Q psy6097 1 YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTVDKV 78 (167)
Q Consensus 1 yG~N~i~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~ 78 (167)
||+|.+..+.++.++++.++..|||++++.+++++|...+|++|+++|+++.+++...+.++.++. ++++|......|
T Consensus 173 yG~N~i~l~ik~i~~iLv~EvL~PfYlFQ~fSv~lW~~d~Y~~YA~cI~iisv~Si~~sv~e~r~qs~rlr~mv~~~~~V 252 (1140)
T KOG0208|consen 173 YGRNVISLPIKSISQILVKEVLNPFYLFQAFSVALWLADSYYYYAFCIVIISVYSIVLSVYETRKQSIRLRSMVKFTCPV 252 (1140)
T ss_pred cCCceeeeecccHHHHHHHhccchHHHHHhHHhhhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence 899999999999999999999999999999999999999999999999999999999999999988 999999887799
Q ss_pred EEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeEEEEeCCcccCCCcccccc-----------------CCC
Q psy6097 79 TVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTVHGALFIMW-----------------EDV 141 (167)
Q Consensus 79 ~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~~~Vdes~ltGEs~p~~k~-----------------~~~ 141 (167)
+|+|+ |.|+++.++||||||++.+|.++-..|||+++++|+|.||||+|||||.|+.|. .+.
T Consensus 253 ~V~R~-g~~~ti~S~eLVPGDil~i~~~~~~~PcDa~Li~g~civNEsmLTGESVPv~K~~l~~~~~~~~~~~~~~~~~~ 331 (1140)
T KOG0208|consen 253 TVIRD-GFWETVDSSELVPGDILYIPPPGKIMPCDALLISGDCIVNESMLTGESVPVTKTPLPMGTDSLDSITISMSTNS 331 (1140)
T ss_pred EEEEC-CEEEEEeccccccccEEEECCCCeEeecceEEEeCcEEeecccccCCcccccccCCccccccCcCeeechhhcC
Confidence 99999 999999999999999999954588999999999999999999999999999992 357
Q ss_pred cCEEeeccEEEEEEeeCCCccce
Q psy6097 142 NHTLYCGTVILQARYHGDEYLPW 164 (167)
Q Consensus 142 ~~~v~aGt~v~~g~~~~~~~~~~ 164 (167)
.|++||||.+++.+.+++.++..
T Consensus 332 rh~lfcGT~vlq~r~~~g~~v~a 354 (1140)
T KOG0208|consen 332 RHTLFCGTKVLQARAYLGGPVLA 354 (1140)
T ss_pred cceeeccceEEEeecCCCCceEE
Confidence 89999999999999998887754
No 5
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=1.8e-32 Score=247.50 Aligned_cols=156 Identities=19% Similarity=0.254 Sum_probs=139.0
Q ss_pred CCCCccCCC-CCCHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCC
Q psy6097 1 YGKNEINVP-IQNISSLFVLEA-LNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTVD 76 (167)
Q Consensus 1 yG~N~i~~~-~~s~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~~ 76 (167)
||+|+++.+ ++|+|++|++++ ++|++++++++++++++.+.|.+++.++++++++...++++++++ .++++.+..+
T Consensus 37 ~G~N~i~~~~~~s~~~~~l~~~~~~~~~~~L~~aa~ls~~~g~~~~~~~i~~~i~~~~~i~~~qe~~a~~~l~~L~~l~~ 116 (884)
T TIGR01522 37 HGWNEFDVEEDESLWKKFLSQFVKNPLILLLIASAVISVFMGNIDDAVSITLAILIVVTVGFVQEYRSEKSLEALNKLVP 116 (884)
T ss_pred cCCCcCCCCCCCCHHHHHHHHHhhChHHHHHHHHHHHHHHHcchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 899999876 589999999999 899999999999999998888888888888888889999999988 5666554433
Q ss_pred -eEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEee-EEEEeCCcccCCCccccccC------------CCc
Q psy6097 77 -KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQG-NCIVNESMLTVHGALFIMWE------------DVN 142 (167)
Q Consensus 77 -~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g-~~~Vdes~ltGEs~p~~k~~------------~~~ 142 (167)
+++|+|| |++++++++||+|||+|.+ ++||++||||++++| ++.||||+|||||.|+.|.. +.+
T Consensus 117 ~~~~ViRd-g~~~~I~~~eLv~GDiv~l-~~Gd~IPaDg~ii~g~~l~VDES~LTGES~pv~K~~~~~~~~~~~~~~~~~ 194 (884)
T TIGR01522 117 PECHLIRE-GKLEHVLASTLVPGDLVCL-SVGDRVPADLRIVEAVDLSIDESNLTGETTPVSKVTAPIPAATNGDLAERS 194 (884)
T ss_pred CeeEEEEC-CEEEEEEHHHCccCCEEEe-cCCCEEeeeEEEEEcCceEEEcccccCCCcceecccccccccccccccccC
Confidence 8999999 9999999999999999999 899999999999999 59999999999999999932 123
Q ss_pred CEEeeccEEEEEEeeC
Q psy6097 143 HTLYCGTVILQARYHG 158 (167)
Q Consensus 143 ~~v~aGt~v~~g~~~~ 158 (167)
|.+|+||.|.+|++.+
T Consensus 195 n~v~~GT~v~~G~~~~ 210 (884)
T TIGR01522 195 NIAFMGTLVRCGHGKG 210 (884)
T ss_pred ceEEeCCEEEeeeEEE
Confidence 6899999999998865
No 6
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=3.7e-32 Score=245.21 Aligned_cols=157 Identities=22% Similarity=0.290 Sum_probs=137.3
Q ss_pred CCCCccCCCC-CCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCC-
Q psy6097 1 YGKNEINVPI-QNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTVD- 76 (167)
Q Consensus 1 yG~N~i~~~~-~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~~- 76 (167)
||+|+++.++ +|+|++|+++|++|++++++++++++++.+.|.++++++++++++.++++++++|+ .++++.+..+
T Consensus 80 ~G~N~l~~~~~~s~~~~~~~~~~~p~~~lL~~aa~ls~~~~~~~~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~ 159 (902)
T PRK10517 80 HGENELPAQKPLPWWVHLWVCYRNPFNILLTILGAISYATEDLFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSN 159 (902)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 8999998765 68999999999999999999988888888888889999999999999999999998 4444443332
Q ss_pred eEEEEecC-----CeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeE-EEEeCCcccCCCccccccC-----------
Q psy6097 77 KVTVKRSK-----GLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN-CIVNESMLTVHGALFIMWE----------- 139 (167)
Q Consensus 77 ~~~V~r~~-----g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~-~~Vdes~ltGEs~p~~k~~----------- 139 (167)
+++|+|++ |++++|++++|+|||+|.+ ++||++||||++++|+ +.||||+|||||.|+.|..
T Consensus 160 ~a~ViR~g~~~~~g~~~~I~~~eLvpGDiV~l-~~Gd~IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~ 238 (902)
T PRK10517 160 TATVLRVINDKGENGWLEIPIDQLVPGDIIKL-AAGDMIPADLRILQARDLFVAQASLTGESLPVEKFATTRQPEHSNPL 238 (902)
T ss_pred eEEEEECCccCCCCeEEEEEHHhCCCCCEEEE-CCCCEEeeeEEEEEcCceEEEecCcCCCCCceecccccccccccCcc
Confidence 79999983 5789999999999999999 8999999999999995 8999999999999999932
Q ss_pred CCcCEEeeccEEEEEEeeC
Q psy6097 140 DVNHTLYCGTVILQARYHG 158 (167)
Q Consensus 140 ~~~~~v~aGt~v~~g~~~~ 158 (167)
+.+|.+|+||.|.+|++.+
T Consensus 239 ~~~n~vfaGT~V~~G~~~~ 257 (902)
T PRK10517 239 ECDTLCFMGTNVVSGTAQA 257 (902)
T ss_pred ccccceeeCceEeeeeEEE
Confidence 1235899999999999875
No 7
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=5.1e-32 Score=243.88 Aligned_cols=156 Identities=24% Similarity=0.290 Sum_probs=137.4
Q ss_pred CCCCccCCCC-CCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCC-C
Q psy6097 1 YGKNEINVPI-QNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTV-D 76 (167)
Q Consensus 1 yG~N~i~~~~-~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~-~ 76 (167)
||+|+++.++ +|+|++++++|++|+.++++++++++++.+.|.++++++++++++..+++++++|+ .++.+.+.. +
T Consensus 46 ~G~N~l~~~~~~~~~~~~~~~~~~p~~~iL~~~a~ls~~~~~~~~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~ 125 (867)
T TIGR01524 46 FGPNQTVEEKKVPNLRLLIRAFNNPFIYILAMLMGVSYLTDDLEATVIIALMVLASGLLGFIQESRAERAAYALKNMVKN 125 (867)
T ss_pred cCCCcCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 8999998765 68999999999999999999999999999999999999999999999999999887 333333222 3
Q ss_pred eEEEEe------cCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeE-EEEeCCcccCCCccccccCC---------
Q psy6097 77 KVTVKR------SKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN-CIVNESMLTVHGALFIMWED--------- 140 (167)
Q Consensus 77 ~~~V~r------~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~-~~Vdes~ltGEs~p~~k~~~--------- 140 (167)
+++|+| | |++++++++||+|||+|.+ ++||++||||++++|+ +.||||+|||||.|+.|...
T Consensus 126 ~~~V~R~~~~~~d-g~~~~I~~~eLv~GDiV~l-~~Gd~VPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~ 203 (867)
T TIGR01524 126 TATVLRVINENGN-GSMDEVPIDALVPGDLIEL-AAGDIIPADARVISARDLFINQSALTGESLPVEKFVEDKRARDPEI 203 (867)
T ss_pred eeEEEEecccCCC-CeEEEEEhhcCCCCCEEEE-CCCCEEcccEEEEecCceEEEcccccCCCCcccccCCccccccccc
Confidence 799999 6 9999999999999999999 8999999999999995 89999999999999999321
Q ss_pred --CcCEEeeccEEEEEEeeC
Q psy6097 141 --VNHTLYCGTVILQARYHG 158 (167)
Q Consensus 141 --~~~~v~aGt~v~~g~~~~ 158 (167)
.+|.+|+||.+.+|++++
T Consensus 204 ~~~~n~vfaGT~v~~G~~~~ 223 (867)
T TIGR01524 204 LERENLCFMGTNVLSGHAQA 223 (867)
T ss_pred cccccceecCCeEEEeEEEE
Confidence 246899999999999875
No 8
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=100.00 E-value=5.9e-32 Score=245.36 Aligned_cols=156 Identities=18% Similarity=0.250 Sum_probs=136.0
Q ss_pred CCCCccCCCC-CCHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6097 1 YGKNEINVPI-QNISSLFVLEALNPFYIFQVFTLCVWFAEA-------------YYYYTGAIICMSVFGIVSSVIQTRQK 66 (167)
Q Consensus 1 yG~N~i~~~~-~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~~~~~~~~~~~ 66 (167)
||+|+++.++ +++|++++++|+++++++++++++++++.+ .|.+++++++++++...+++++++++
T Consensus 73 yG~N~l~~~~~~s~~~~~~~~f~~~~~~~l~~~ails~~~~~~~~~~~~~~~~~~~~~~~~il~~v~~~~~i~~~~e~~~ 152 (941)
T TIGR01517 73 YGKNELPEKPPKSFLQIVWAALSDQTLILLSVAAVVSLVLGLPEPGEGKADTETGWIEGVAILVSVILVVLVTAVNDYKK 152 (941)
T ss_pred hCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHhhcccccccCccccchHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8999998765 699999999999999999999888888755 57778888888888888888888887
Q ss_pred --HHhhhhc--CCCeEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEee-EEEEeCCcccCCCccccccCCC
Q psy6097 67 --SLHDTVN--TVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQG-NCIVNESMLTVHGALFIMWEDV 141 (167)
Q Consensus 67 --~l~~~~~--~~~~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g-~~~Vdes~ltGEs~p~~k~~~~ 141 (167)
+++++.+ ..++++|+|| |+++++++++|+|||+|.+ ++||++||||++++| ++.||||+|||||.|+.|....
T Consensus 153 ~~~~~~l~~~~~~~~~~ViRd-G~~~~I~~~~Lv~GDiV~l-~~Gd~IPaD~~li~g~~l~VdES~LTGES~pv~K~~~~ 230 (941)
T TIGR01517 153 ELQFRQLNREKSAQKIAVIRG-GQEQQISIHDIVVGDIVSL-STGDVVPADGVFISGLSLEIDESSITGESDPIKKGAPK 230 (941)
T ss_pred HHHHHHHHhccCCCceEEEEC-CEEEEEeHHHCCCCCEEEE-CCCCEecccEEEEEcCcEEEEecccCCCCCcccccCCC
Confidence 4455443 2348999999 9999999999999999999 899999999999999 8999999999999999995445
Q ss_pred cCEEeeccEEEEEEeeC
Q psy6097 142 NHTLYCGTVILQARYHG 158 (167)
Q Consensus 142 ~~~v~aGt~v~~g~~~~ 158 (167)
.|++|+||.+.+|++.+
T Consensus 231 ~n~v~~GT~v~~G~~~~ 247 (941)
T TIGR01517 231 DSFLLSGTVVNEGSGRM 247 (941)
T ss_pred CceEEeCCeEEeeEEEE
Confidence 66799999999999864
No 9
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=99.98 E-value=3.1e-31 Score=239.44 Aligned_cols=157 Identities=20% Similarity=0.298 Sum_probs=134.6
Q ss_pred CCCCccCCCC-CCHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy6097 1 YGKNEINVPI-QNISSLFVLEALNPFYIFQVFTLCVWFAEAY-----------YYYTGAIICMSVFGIVSSVIQTRQK-- 66 (167)
Q Consensus 1 yG~N~i~~~~-~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~i~~~~~~~~~~~~~~~~~~-- 66 (167)
||+|+++.++ +++|.+|+++|++|+.++++++++++++.++ |..+++++++++++..+++++++++
T Consensus 58 ~G~N~l~~~~~~~~~~~~l~~f~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~iI~~~v~l~~~i~~~qe~~a~~ 137 (903)
T PRK15122 58 YGPNEVAHEKPPHALVQLLQAFNNPFIYVLMVLAAISFFTDYWLPLRRGEETDLTGVIIILTMVLLSGLLRFWQEFRSNK 137 (903)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCCccccHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998755 7899999999999999999999988888753 4577788899999999999999988
Q ss_pred HHhhhhcCC-CeEEEEecC-----CeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeE-EEEeCCcccCCCccccccC
Q psy6097 67 SLHDTVNTV-DKVTVKRSK-----GLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN-CIVNESMLTVHGALFIMWE 139 (167)
Q Consensus 67 ~l~~~~~~~-~~~~V~r~~-----g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~-~~Vdes~ltGEs~p~~k~~ 139 (167)
.++++.+.. ++++|+|++ |++++|++++|+|||+|.+ ++||++||||++++|+ +.||||+|||||.|+.|..
T Consensus 138 a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~~~eLv~GDiV~l-~~Gd~IPaDg~li~g~~l~VDES~LTGES~PV~K~~ 216 (903)
T PRK15122 138 AAEALKAMVRTTATVLRRGHAGAEPVRREIPMRELVPGDIVHL-SAGDMIPADVRLIESRDLFISQAVLTGEALPVEKYD 216 (903)
T ss_pred HHHHHHhccCCceEEEECCccCCCCeEEEEEHHHCCCCCEEEE-CCCCEEeeeEEEEEcCceEEEccccCCCCcceeeec
Confidence 444443332 379999983 4789999999999999999 8999999999999995 7999999999999999942
Q ss_pred ---------------------CCcCEEeeccEEEEEEeeC
Q psy6097 140 ---------------------DVNHTLYCGTVILQARYHG 158 (167)
Q Consensus 140 ---------------------~~~~~v~aGt~v~~g~~~~ 158 (167)
+.+|.+|+||.|.+|++++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~ 256 (903)
T PRK15122 217 TLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATA 256 (903)
T ss_pred cccccccccccccccccCCcccccceEEeCCEEEeeeEEE
Confidence 1247999999999999875
No 10
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.97 E-value=9.3e-31 Score=238.54 Aligned_cols=156 Identities=17% Similarity=0.226 Sum_probs=134.4
Q ss_pred CCCCccCCC-CCCHHHHHHHHhhhHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6097 1 YGKNEINVP-IQNISSLFVLEALNPFYIFQVFTLCVWFAE-------------AYYYYTGAIICMSVFGIVSSVIQTRQK 66 (167)
Q Consensus 1 yG~N~i~~~-~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~~~~~ 66 (167)
||+|+++.+ ++++|++|++++++|+.++++++++++++. ++|..+++++++++++..+++++++|+
T Consensus 49 ~G~N~l~~~~~~~~~~~~l~~~~~~~~~iL~~aa~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~i~~~qe~ka 128 (997)
T TIGR01106 49 DGPNALTPPPTTPEWVKFCRQLFGGFSMLLWIGAILCFLAYGIQASTEEEPQNDNLYLGVVLSAVVIITGCFSYYQEAKS 128 (997)
T ss_pred hCCCCCCCCCCCCHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999764 578999999999999998888888776654 356778888999999999999999998
Q ss_pred --HHhhhhcCCC-eEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeE-EEEeCCcccCCCccccccC---
Q psy6097 67 --SLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN-CIVNESMLTVHGALFIMWE--- 139 (167)
Q Consensus 67 --~l~~~~~~~~-~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~-~~Vdes~ltGEs~p~~k~~--- 139 (167)
.++++.+..+ +++|+|| |+++++++++|+|||+|.+ ++||++||||++++|+ +.||||+|||||.|+.|..
T Consensus 129 ~~~l~~l~~~~~~~~~ViRd-g~~~~I~~~~lv~GDiv~l-~~Gd~IPaD~~il~~~~l~VdeS~LTGES~pv~K~~~~~ 206 (997)
T TIGR01106 129 SKIMESFKNMVPQQALVIRD-GEKMSINAEQVVVGDLVEV-KGGDRIPADLRIISAQGCKVDNSSLTGESEPQTRSPEFT 206 (997)
T ss_pred HHHHHHHhccCCCeeEEEEC-CEEEEeeHHHCCCCCEEEE-CCCCEEeeeEEEEEccCcEEEccccCCCCCceeccCCCc
Confidence 5555554433 8999999 9999999999999999999 8999999999999995 8999999999999999832
Q ss_pred -----CCcCEEeeccEEEEEEeeC
Q psy6097 140 -----DVNHTLYCGTVILQARYHG 158 (167)
Q Consensus 140 -----~~~~~v~aGt~v~~g~~~~ 158 (167)
+..|.+|+||.+++|++.+
T Consensus 207 ~~~~~~~~n~l~~Gt~v~~G~~~~ 230 (997)
T TIGR01106 207 HENPLETRNIAFFSTNCVEGTARG 230 (997)
T ss_pred ccCccccCCeEEeccEeeeeeEEE
Confidence 1235899999999998764
No 11
>KOG0202|consensus
Probab=99.97 E-value=2.2e-31 Score=231.10 Aligned_cols=157 Identities=24% Similarity=0.339 Sum_probs=144.8
Q ss_pred CCCCccCC-CCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCC-
Q psy6097 1 YGKNEINV-PIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTVD- 76 (167)
Q Consensus 1 yG~N~i~~-~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~~- 76 (167)
||+|+++. ..+|+|+++++||.+++..+++++++++|....|.+++.|.++++++....++|||++ .+..+.+..+
T Consensus 36 yG~Nel~~ee~~~~wk~vLeQF~n~Li~iLL~sA~ISfvl~~~~e~~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~ 115 (972)
T KOG0202|consen 36 YGENELPAEEGESLWKLVLEQFDNPLILILLLSAAISFVLADFDEPFVITLIIVINVTVGFVQEYNAEKALEALKELVPP 115 (972)
T ss_pred cCCccCccccCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcccceeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCc
Confidence 89999986 4699999999999999999999999999999999999999999999999999999999 6666655544
Q ss_pred eEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEee-EEEEeCCcccCCCcccccc------------CCCcC
Q psy6097 77 KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQG-NCIVNESMLTVHGALFIMW------------EDVNH 143 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g-~~~Vdes~ltGEs~p~~k~------------~~~~~ 143 (167)
.++|+|+ |+.+.+++++|||||++.+ +-||+||||.++++- ++.+|||.||||+.|+.|. +++.|
T Consensus 116 ~~~V~R~-gk~~~i~A~eLVPGDiV~l-~vGDkVPADlRl~e~~sl~iDeS~LTGEs~pv~K~t~~v~~~~~~~~~dk~N 193 (972)
T KOG0202|consen 116 MAHVLRS-GKLQHILARELVPGDIVEL-KVGDKIPADLRLIEAKSLRIDESSLTGESEPVSKDTDAVPKDENADVQDKKN 193 (972)
T ss_pred cceEEec-CcccceehhccCCCCEEEE-ecCCccccceeEEeeeeeeeecccccCCcccccccCccccCCCCCcccccee
Confidence 8999999 8999999999999999999 999999999999988 6999999999999999992 36789
Q ss_pred EEeeccEEEEEEeeCC
Q psy6097 144 TLYCGTVILQARYHGD 159 (167)
Q Consensus 144 ~v~aGt~v~~g~~~~~ 159 (167)
.+|+||.+..|+|+|-
T Consensus 194 iaFsGT~V~~G~a~GI 209 (972)
T KOG0202|consen 194 IAFSGTLVVAGRAKGI 209 (972)
T ss_pred eEeecceeecCceeEE
Confidence 9999999999999873
No 12
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.4e-29 Score=229.03 Aligned_cols=156 Identities=25% Similarity=0.373 Sum_probs=137.9
Q ss_pred CCCCccCCC-CCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhc
Q psy6097 1 YGKNEINVP-IQNISSLFVLEALNPFYIFQVFTLCVWFAEAYY----YYTGAIICMSVFGIVSSVIQTRQK--SLHDTVN 73 (167)
Q Consensus 1 yG~N~i~~~-~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~ 73 (167)
||+|+++.. +.+++..++.+|++++.++++++++++++.+.| .+...++++++++...+++|++|+ .++.+.+
T Consensus 57 ~G~N~~~~~~~~~~~~~fl~~f~~~~~~iL~~~a~~s~~~~~~~~~~~~~~~I~~~i~~n~~~g~~qe~~a~~~l~~lk~ 136 (917)
T COG0474 57 YGPNELPEEKKRSLLKKFLRQFKDPFIILLLVAALLSAFVGDWVDAGVDAIVILLVVVINALLGFVQEYRAEKALEALKK 136 (917)
T ss_pred cCCccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcceeeehHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999864 579999999999999999999999999988887 566688999999999999999998 3333332
Q ss_pred C-CCeEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeEE-EEeCCcccCCCcccccc------------C
Q psy6097 74 T-VDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNC-IVNESMLTVHGALFIMW------------E 139 (167)
Q Consensus 74 ~-~~~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~~-~Vdes~ltGEs~p~~k~------------~ 139 (167)
. .++++|+|| |++++++++||||||+|.+ .+||++|||++++++++ .||||+|||||.|+.|. .
T Consensus 137 ~~~~~~~V~R~-g~~~~i~a~eLVpGDiV~l-~~gd~vPAD~rLl~~~~l~VdEs~LTGES~pv~K~~~~~~~~~~~~~~ 214 (917)
T COG0474 137 MSSPKAKVLRD-GKFVEIPASELVPGDIVLL-EAGDVVPADLRLLESSDLEVDESALTGESLPVEKQALPLTKSDAPLGL 214 (917)
T ss_pred hccCceEEEeC-CcEEEecHHHCCCCcEEEE-CCCCccccceEEEEecCceEEcccccCCCcchhccccccccccccccC
Confidence 2 237999998 9999999999999999999 89999999999999975 99999999999999994 2
Q ss_pred CCcCEEeeccEEEEEEeeC
Q psy6097 140 DVNHTLYCGTVILQARYHG 158 (167)
Q Consensus 140 ~~~~~v~aGt~v~~g~~~~ 158 (167)
+..|.+|+||.+.+|+|.|
T Consensus 215 d~~n~l~sGt~V~~G~~~g 233 (917)
T COG0474 215 DRDNMLFSGTTVVSGRAKG 233 (917)
T ss_pred CccceEEeCCEEEcceEEE
Confidence 5689999999999999876
No 13
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=99.95 E-value=1.5e-27 Score=216.10 Aligned_cols=140 Identities=21% Similarity=0.316 Sum_probs=122.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCC-CeEEEEec
Q psy6097 17 FVLEALNPFYIFQVFTLCVWFAEA----------YYYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTV-DKVTVKRS 83 (167)
Q Consensus 17 ~~~~~~~~~~i~~~~~~~~~~~~~----------~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~-~~~~V~r~ 83 (167)
++++|++|+.++++++++++++.+ .|..+++++++++++..+++++++++ .++++.+.. ++++|+|+
T Consensus 1 ~~~~f~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~ViRd 80 (917)
T TIGR01116 1 VLEQFEDLLVRILLLAACVSFVLAWFEEGEETVTAFVEPFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVLRD 80 (917)
T ss_pred ChHHHhCHHHHHHHHHHHHHHHHhcccccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEC
Confidence 368999999999999999988764 57788999999999999999999998 555555443 38999999
Q ss_pred CCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEee-EEEEeCCcccCCCccccccC-----------CCcCEEeeccEE
Q psy6097 84 KGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQG-NCIVNESMLTVHGALFIMWE-----------DVNHTLYCGTVI 151 (167)
Q Consensus 84 ~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g-~~~Vdes~ltGEs~p~~k~~-----------~~~~~v~aGt~v 151 (167)
|+++++++++|||||+|.+ ++||++||||++++| ++.||||+|||||.|+.|.. +.+|.+|+||.+
T Consensus 81 -g~~~~I~~~~Lv~GDiv~l-~~Gd~IPaD~~ll~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~n~l~~GT~v 158 (917)
T TIGR01116 81 -GRWSVIKAKDLVPGDIVEL-AVGDKVPADIRVLSLKTLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLV 158 (917)
T ss_pred -CEEEEEEHHHCCCCCEEEE-CCCCEeeccEEEEEecceEEEcccccCCCCcccccccccCccccCcccccceeeeCCEE
Confidence 9999999999999999999 899999999999999 49999999999999999932 123899999999
Q ss_pred EEEEeeC
Q psy6097 152 LQARYHG 158 (167)
Q Consensus 152 ~~g~~~~ 158 (167)
.+|++.+
T Consensus 159 ~~G~~~~ 165 (917)
T TIGR01116 159 VAGKARG 165 (917)
T ss_pred ecceEEE
Confidence 9998865
No 14
>KOG0205|consensus
Probab=99.95 E-value=1.5e-28 Score=208.96 Aligned_cols=153 Identities=22% Similarity=0.281 Sum_probs=136.4
Q ss_pred CCCCccCCCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-H-Hhhh
Q psy6097 1 YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEA-------YYYYTGAIICMSVFGIVSSVIQTRQK-S-LHDT 71 (167)
Q Consensus 1 yG~N~i~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~-~-l~~~ 71 (167)
||+|++..+|.+.+..|+.-|++|+.+.+-+|+++..... .|.....|.++++++..+++.+|+.+ + -+.+
T Consensus 49 fG~NkleEkken~~lKFl~Fm~~PlswVMEaAAimA~~Lang~~~~~DW~DF~gI~~LLliNsti~FveE~nAGn~aa~L 128 (942)
T KOG0205|consen 49 FGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIGLANGGGRPPDWQDFVGICCLLLINSTISFIEENNAGNAAAAL 128 (942)
T ss_pred hCchhhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhheeeeecceeeeeeccccchHHHHH
Confidence 8999999999999999999999999776666666666544 68888889999999999999999998 3 2333
Q ss_pred -hcCCCeEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeE-EEEeCCcccCCCccccccCCCcCEEeecc
Q psy6097 72 -VNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN-CIVNESMLTVHGALFIMWEDVNHTLYCGT 149 (167)
Q Consensus 72 -~~~~~~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~-~~Vdes~ltGEs~p~~k~~~~~~~v~aGt 149 (167)
....++..|+|| |+|.++.+.+||||||+.+ +.|+.+|||+++++|+ +.||+|.|||||.|+.| ++|+.+|+||
T Consensus 129 ~a~LA~KakVlRD-Gkw~E~eAs~lVPGDIlsi-k~GdIiPaDaRLl~gD~LkiDQSAlTGESLpvtK--h~gd~vfSgS 204 (942)
T KOG0205|consen 129 MAGLAPKAKVLRD-GKWSEQEASILVPGDILSI-KLGDIIPADARLLEGDPLKIDQSALTGESLPVTK--HPGDEVFSGS 204 (942)
T ss_pred HhccCcccEEeec-CeeeeeeccccccCceeee-ccCCEecCccceecCCccccchhhhcCCcccccc--CCCCceeccc
Confidence 344568999999 9999999999999999999 9999999999999997 99999999999999999 9999999999
Q ss_pred EEEEEEee
Q psy6097 150 VILQARYH 157 (167)
Q Consensus 150 ~v~~g~~~ 157 (167)
+|.+|++.
T Consensus 205 TcKqGE~e 212 (942)
T KOG0205|consen 205 TCKQGEIE 212 (942)
T ss_pred ccccceEE
Confidence 99999864
No 15
>KOG0204|consensus
Probab=99.94 E-value=5.5e-28 Score=210.12 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=127.3
Q ss_pred CCCCccCCC-CCCHHHHHHHHhhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q psy6097 1 YGKNEINVP-IQNISSLFVLEALNPFYIFQVFTLCVWFAEA--------YYYYTGAIICMSVFGIVSSVIQTRQK----- 66 (167)
Q Consensus 1 yG~N~i~~~-~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~~~~~~~~----- 66 (167)
||.|.++.+ .++||++.++.+.+...+++.+|+++++..+ .|+.++.|++.++.-.+.+...+|++
T Consensus 132 fG~N~~p~k~~K~Fl~fvweA~qD~TLiIL~vaAvvSl~lgi~~~g~~~GW~eG~aI~~sV~~VV~VtA~nDy~qe~QF~ 211 (1034)
T KOG0204|consen 132 FGSNTYPEKPPKGFLRFVWEALQDVTLIILMVAAVVSLGLGIYTPGIEDGWIEGVAILLSVILVVLVTAVNDYRQELQFR 211 (1034)
T ss_pred cCCCCCCCCCCccHHHHHHHHhccchHHHHHHHHHHHHhhhhccCCCCcccccchhheeeEEEEEEEeecchhHHhhhhh
Confidence 899999875 5899999999999998888888888888653 36666666654333333334444444
Q ss_pred HHhhhhcCCCeEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEee-EEEEeCCcccCCCccccccCCCcCEE
Q psy6097 67 SLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQG-NCIVNESMLTVHGALFIMWEDVNHTL 145 (167)
Q Consensus 67 ~l~~~~~~~~~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g-~~~Vdes~ltGEs~p~~k~~~~~~~v 145 (167)
+|++.. .+.+..|+|+ |+.++++..||+|||++.+ +.||++||||++++| ++.+|||++||||.++.|....+.++
T Consensus 212 ~L~~~k-~~~k~~ViR~-G~r~~isI~diVVGDIv~l-k~GDqvPADGvli~gn~L~iDESSlTGESd~v~k~~~~dPfL 288 (1034)
T KOG0204|consen 212 KLQKEK-RNIKFQVIRG-GRRQQISIYDLVVGDIVQL-KIGDQVPADGVLIQGNSLKIDESSLTGESDHVQKSLDKDPFL 288 (1034)
T ss_pred hhhhhh-hceEEEEEEC-CEEEEEEEeeeeeccEEEe-ecCCccccceEEEeccceeEecccccCCCcceeccCCCCCeE
Confidence 444332 2338999999 9999999999999999999 999999999999999 69999999999999999987789999
Q ss_pred eeccEEEEEEee
Q psy6097 146 YCGTVILQARYH 157 (167)
Q Consensus 146 ~aGt~v~~g~~~ 157 (167)
++||++++|.|+
T Consensus 289 lSGTkv~eGsgk 300 (1034)
T KOG0204|consen 289 LSGTKVMEGSGK 300 (1034)
T ss_pred eecceeecCcce
Confidence 999999999885
No 16
>KOG0209|consensus
Probab=99.94 E-value=1.2e-26 Score=201.22 Aligned_cols=159 Identities=31% Similarity=0.546 Sum_probs=142.1
Q ss_pred CCCCccCCCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCCeE
Q psy6097 1 YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTVDKV 78 (167)
Q Consensus 1 yG~N~i~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~ 78 (167)
||+|+..+..++|.++|.++...||+.+++++..+|.+.+||+|+..-++|++....--.+|+.|. .+++|-.....+
T Consensus 176 ~G~N~fdi~vPtF~eLFkE~A~aPfFVFQVFcvgLWCLDeyWYySlFtLfMli~fE~tlV~Qrm~~lse~R~Mg~kpy~I 255 (1160)
T KOG0209|consen 176 YGKNKFDIVVPTFSELFKEHAVAPFFVFQVFCVGLWCLDEYWYYSLFTLFMLIAFEATLVKQRMRTLSEFRTMGNKPYTI 255 (1160)
T ss_pred hcCCccccCCccHHHHHHHhccCceeeHhHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 899999999999999999999999999999999999999999999998888887777668888887 888888776699
Q ss_pred EEEecCCeeEEeeCCCcCCCcEEEEccC--CcEEeeeEEEEeeEEEEeCCcccCCCcccccc---------------CCC
Q psy6097 79 TVKRSKGLYEEVPTTHLVPGDIIVIPKH--GCTLACDATLLQGNCIVNESMLTVHGALFIMW---------------EDV 141 (167)
Q Consensus 79 ~V~r~~g~~~~i~~~~lv~GDii~v~~~--g~~iP~D~~vl~g~~~Vdes~ltGEs~p~~k~---------------~~~ 141 (167)
.|+|+ ++|+.+.++||.|||+|.+.+. ...+|||.+++.|+|.||||+|||||.|.-|. .++
T Consensus 256 ~v~R~-kKW~~l~seeLlPgDvVSI~r~~ed~~vPCDllLL~GsciVnEaMLtGESvPl~KE~Ie~~~~d~~ld~~~d~k 334 (1160)
T KOG0209|consen 256 NVYRN-KKWVKLMSEELLPGDVVSIGRGAEDSHVPCDLLLLRGSCIVNEAMLTGESVPLMKESIELRDSDDILDIDRDDK 334 (1160)
T ss_pred EEEec-CcceeccccccCCCceEEeccCcccCcCCceEEEEecceeechhhhcCCCccccccccccCChhhhcccccccc
Confidence 99999 9999999999999999999432 44599999999999999999999999998882 247
Q ss_pred cCEEeeccEEEEEEeeCCC
Q psy6097 142 NHTLYCGTVILQARYHGDE 160 (167)
Q Consensus 142 ~~~v~aGt~v~~g~~~~~~ 160 (167)
.+.+|+||.+++-+...+.
T Consensus 335 ~hVlfGGTkivQht~p~~~ 353 (1160)
T KOG0209|consen 335 LHVLFGGTKIVQHTPPKKA 353 (1160)
T ss_pred eEEEEcCceEEEecCCccc
Confidence 7899999999998665443
No 17
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.94 E-value=1e-25 Score=194.31 Aligned_cols=127 Identities=20% Similarity=0.257 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCC-eEEEEecCCeeEEeeCCCcCCCcEEEEc
Q psy6097 28 FQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIP 104 (167)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~~-~~~V~r~~g~~~~i~~~~lv~GDii~v~ 104 (167)
++.+++++.++.+.|+.++.++++++++.+++.++++|+ .++++.+..+ +++|+|+ |+++++++++|+|||++.+
T Consensus 4 l~~~a~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~r~-g~~~~i~~~~l~~GDiv~v- 81 (536)
T TIGR01512 4 LMALAALGAVAIGEYLEGALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVLRG-GSLEEVAVEELKVGDVVVV- 81 (536)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEC-CEEEEEEHHHCCCCCEEEE-
Confidence 444555555555667778888889999999999999988 6777665443 8999999 9999999999999999999
Q ss_pred cCCcEEeeeEEEEeeEEEEeCCcccCCCccccccCCCcCEEeeccEEEEEEeeC
Q psy6097 105 KHGCTLACDATLLQGNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQARYHG 158 (167)
Q Consensus 105 ~~g~~iP~D~~vl~g~~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g~~~~ 158 (167)
++||++||||++++|++.||||++|||+.|+.| ++++.+|+||.+.+|.++.
T Consensus 82 ~~G~~iP~Dg~ii~g~~~vdes~lTGEs~pv~k--~~g~~v~aGt~v~~G~~~~ 133 (536)
T TIGR01512 82 KPGERVPVDGVVLSGTSTVDESALTGESVPVEK--APGDEVFAGAINLDGVLTI 133 (536)
T ss_pred cCCCEeecceEEEeCcEEEEecccCCCCCcEEe--CCCCEEEeeeEECCceEEE
Confidence 999999999999999999999999999999999 8999999999999998764
No 18
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=99.93 E-value=5.6e-25 Score=192.69 Aligned_cols=136 Identities=19% Similarity=0.270 Sum_probs=108.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH----HHHH--HHhhhhcCCC--eEE
Q psy6097 19 LEALNPFYIFQVFTLCVWFAEAYYY-----------YTGAIICMSVFGIVSSVIQ----TRQK--SLHDTVNTVD--KVT 79 (167)
Q Consensus 19 ~~~~~~~~i~~~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~~~~----~~~~--~l~~~~~~~~--~~~ 79 (167)
..+++|+.++++++++++++.+.|. +.+.++++++++..++.++ ++|+ +++++.+..+ +++
T Consensus 28 ~~~~~p~~~il~~aa~ls~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~ 107 (673)
T PRK14010 28 YMIKNPIMFVVEVGMLLALGLTIYPDLFHQESVSRLYVFSIFIILLLTLVFANFSEALAEGRGKAQANALRQTQTEMKAR 107 (673)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence 3456788888888888877665542 3556666666666655555 5666 5555554433 465
Q ss_pred -EEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeEEEEeCCcccCCCccccccCCCc---CEEeeccEEEEEE
Q psy6097 80 -VKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTVHGALFIMWEDVN---HTLYCGTVILQAR 155 (167)
Q Consensus 80 -V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~~~Vdes~ltGEs~p~~k~~~~~---~~v~aGt~v~~g~ 155 (167)
|.|| |+++++++++|+|||+|.+ ++||+|||||++++|++.||||++||||.|+.| +++ +.+|+||.+.+|+
T Consensus 108 ~v~rd-g~~~~I~a~eLv~GDiV~v-~~Gd~IPaDG~vieG~~~VDESaLTGES~PV~K--~~g~d~~~V~aGT~v~~G~ 183 (673)
T PRK14010 108 RIKQD-GSYEMIDASDLKKGHIVRV-ATGEQIPNDGKVIKGLATVDESAITGESAPVIK--ESGGDFDNVIGGTSVASDW 183 (673)
T ss_pred EEEeC-CEEEEEEHHHcCCCCEEEE-CCCCcccCCeEEEEcceEEecchhcCCCCceec--cCCCccCeeecCceeecce
Confidence 6688 9999999999999999999 999999999999999999999999999999999 777 7899999999998
Q ss_pred eeC
Q psy6097 156 YHG 158 (167)
Q Consensus 156 ~~~ 158 (167)
+.+
T Consensus 184 ~~i 186 (673)
T PRK14010 184 LEV 186 (673)
T ss_pred EEE
Confidence 864
No 19
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.93 E-value=5.6e-25 Score=190.48 Aligned_cols=129 Identities=18% Similarity=0.256 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCC-eEEEEecCCeeEEeeCCCcCCCcEEEE
Q psy6097 27 IFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVI 103 (167)
Q Consensus 27 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~~-~~~V~r~~g~~~~i~~~~lv~GDii~v 103 (167)
.+..++++.+++.+.|..+..++++++++.+++.++++|+ +++++....+ +++++|++|+++++++++|+|||+|.+
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~r~~g~~~~i~~~~l~~GDiv~v 82 (556)
T TIGR01525 3 LLMALATIAAYAMGLVLEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVLQGDGSEEEVPVEELQVGDIVIV 82 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHCCCCCEEEE
Confidence 3556666777777788889999999999999999999888 6777766654 899999844999999999999999999
Q ss_pred ccCCcEEeeeEEEEeeEEEEeCCcccCCCccccccCCCcCEEeeccEEEEEEeeC
Q psy6097 104 PKHGCTLACDATLLQGNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQARYHG 158 (167)
Q Consensus 104 ~~~g~~iP~D~~vl~g~~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g~~~~ 158 (167)
++||.+||||++++|++.||||++|||+.|+.| .+++.+|+||.+.+|++++
T Consensus 83 -~~G~~iP~Dg~vi~g~~~vdes~lTGEs~pv~k--~~g~~v~aGt~v~~g~~~~ 134 (556)
T TIGR01525 83 -RPGERIPVDGVVISGESEVDESALTGESMPVEK--KEGDEVFAGTINGDGSLTI 134 (556)
T ss_pred -CCCCEeccceEEEecceEEeehhccCCCCCEec--CCcCEEeeceEECCceEEE
Confidence 999999999999999999999999999999999 8999999999999998764
No 20
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=99.93 E-value=4.6e-25 Score=171.06 Aligned_cols=107 Identities=29% Similarity=0.493 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHhhhhcCCC-e-EEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEe-eEEE
Q psy6097 48 IICMSVFGIVSSVIQTRQK--SLHDTVNTVD-K-VTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQ-GNCI 122 (167)
Q Consensus 48 i~~~~~~~~~~~~~~~~~~--~l~~~~~~~~-~-~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~-g~~~ 122 (167)
++++++++.+++.++++|+ .++++.+..+ + ++|+|+ |+++.+++++|+|||+|.+ ++||.+||||++++ |++.
T Consensus 2 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~-~~~~~i~~~~L~~GDiI~l-~~g~~vPaD~~ll~~g~~~ 79 (230)
T PF00122_consen 2 ILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIRD-GRWQKIPSSELVPGDIIIL-KAGDIVPADGILLESGSAY 79 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEET-TEEEEEEGGGT-TTSEEEE-ETTEBESSEEEEEESSEEE
T ss_pred EEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEEec-cccccchHhhccceeeeec-ccccccccCccceeccccc
Confidence 5677777888888888877 5555544333 4 899999 9999999999999999999 99999999999999 9999
Q ss_pred EeCCcccCCCccccccCC-----CcCEEeeccEEEEEEeeC
Q psy6097 123 VNESMLTVHGALFIMWED-----VNHTLYCGTVILQARYHG 158 (167)
Q Consensus 123 Vdes~ltGEs~p~~k~~~-----~~~~v~aGt~v~~g~~~~ 158 (167)
||||.+|||+.|+.| . .++.+|+||.+.+|.+.+
T Consensus 80 vd~s~ltGes~pv~k--~~~~~~~~~~i~~Gs~v~~g~~~~ 118 (230)
T PF00122_consen 80 VDESALTGESEPVKK--TPLPLNPGNIIFAGSIVVSGWGIG 118 (230)
T ss_dssp EECHHHHSBSSEEEE--SSSCCCTTTEE-TTEEEEEEEEEE
T ss_pred ccccccccccccccc--ccccccccchhhcccccccccccc
Confidence 999999999999999 7 999999999999998865
No 21
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=99.92 E-value=2.7e-24 Score=188.59 Aligned_cols=137 Identities=19% Similarity=0.171 Sum_probs=108.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCC--eEE
Q psy6097 18 VLEALNPFYIFQVFTLCVWFAEAY--------------YYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTVD--KVT 79 (167)
Q Consensus 18 ~~~~~~~~~i~~~~~~~~~~~~~~--------------~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~~--~~~ 79 (167)
..++.+|+.++++++++++++... +...+.+++.+++..+.+.++++|+ +++.+.+..+ +++
T Consensus 28 ~~~~~~p~~~vl~~~a~ls~~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~ 107 (679)
T PRK01122 28 RVQIRNPVMFVVEVGSILTTILTIAPLLFQSGGPAGFNLAITLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFAR 107 (679)
T ss_pred HHHhhChHHHHHHHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 356778888888888877776531 2222334445556666777888777 5555555433 699
Q ss_pred EEecCCe-eEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeEEEEeCCcccCCCccccccCCCcCE---EeeccEEEEEE
Q psy6097 80 VKRSKGL-YEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTVHGALFIMWEDVNHT---LYCGTVILQAR 155 (167)
Q Consensus 80 V~r~~g~-~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~~~Vdes~ltGEs~p~~k~~~~~~~---v~aGt~v~~g~ 155 (167)
++|+ |+ ++++++++|++||+|.+ ++||++||||++++|++.||||.+||||.|+.| +.++. +|+||.+.+|+
T Consensus 108 vir~-g~~~~~V~~~eL~~GDiV~v-~~Gd~IPaDG~vieG~a~VDESaLTGES~PV~K--~~G~~~~~V~aGT~v~~G~ 183 (679)
T PRK01122 108 KLRE-PGAAEEVPATELRKGDIVLV-EAGEIIPADGEVIEGVASVDESAITGESAPVIR--ESGGDFSSVTGGTRVLSDW 183 (679)
T ss_pred EEEC-CCEEEEEEHHHcCCCCEEEE-cCCCEEEEEEEEEEccEEEEcccccCCCCceEe--CCCCccCeEEeceEEEeee
Confidence 9998 65 89999999999999999 999999999999999999999999999999999 66666 99999999998
Q ss_pred eeC
Q psy6097 156 YHG 158 (167)
Q Consensus 156 ~~~ 158 (167)
+..
T Consensus 184 ~~i 186 (679)
T PRK01122 184 IVI 186 (679)
T ss_pred EEE
Confidence 754
No 22
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=99.92 E-value=2.7e-24 Score=186.38 Aligned_cols=115 Identities=23% Similarity=0.330 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCC-eEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEE
Q psy6097 41 YYYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLL 117 (167)
Q Consensus 41 ~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~~-~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl 117 (167)
|+..+..+++++.++.+++.+.++|+ .++++.+..| +++++|++|+++++++++|+|||+|.+ ++||++||||+++
T Consensus 53 ~~~~~~~i~~~~~~g~~le~~~~~~a~~~~~~L~~~~p~~a~~~~~~~~~~~v~~~~l~~GDii~v-~~Ge~iP~Dg~v~ 131 (562)
T TIGR01511 53 FFDASAMLITFILLGRWLEMLAKGRASDALSKLAKLQPSTATLLTKDGSIEEVPVALLQPGDIVKV-LPGEKIPVDGTVI 131 (562)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHCCCCCEEEE-CCCCEecCceEEE
Confidence 45556666777888888888877777 6677766655 889998767889999999999999999 9999999999999
Q ss_pred eeEEEEeCCcccCCCccccccCCCcCEEeeccEEEEEEeeC
Q psy6097 118 QGNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQARYHG 158 (167)
Q Consensus 118 ~g~~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g~~~~ 158 (167)
+|++.||||.+|||+.|+.| .+|+.|||||.+.+|....
T Consensus 132 ~g~~~vdes~lTGEs~pv~k--~~gd~V~aGt~~~~g~~~~ 170 (562)
T TIGR01511 132 EGESEVDESLVTGESLPVPK--KVGDPVIAGTVNGTGSLVV 170 (562)
T ss_pred ECceEEehHhhcCCCCcEEc--CCCCEEEeeeEECCceEEE
Confidence 99999999999999999999 9999999999999998753
No 23
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=99.92 E-value=7.8e-24 Score=185.44 Aligned_cols=138 Identities=20% Similarity=0.285 Sum_probs=108.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHH-------------HHHH---HHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCC--e
Q psy6097 18 VLEALNPFYIFQVFTLCVWFAEAY-------------YYYT---GAIICMSVFGIVSSVIQTRQK--SLHDTVNTVD--K 77 (167)
Q Consensus 18 ~~~~~~~~~i~~~~~~~~~~~~~~-------------~~~~---~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~~--~ 77 (167)
..++.+|..++++++++++++... |+.. +.+++.+++..+.+.++++|+ +++++.+..+ .
T Consensus 27 ~~~~~~p~~~il~~~a~is~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~ 106 (675)
T TIGR01497 27 KAQWRNPVMFIVWVGSLLTTCITIAPASFGMPGNNLALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTF 106 (675)
T ss_pred HHHhhChHHHHHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCce
Confidence 346678877777777777766421 2322 223444566777778888877 6666655433 5
Q ss_pred EEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeEEEEeCCcccCCCccccccCCCcC---EEeeccEEEEE
Q psy6097 78 VTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTVHGALFIMWEDVNH---TLYCGTVILQA 154 (167)
Q Consensus 78 ~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~~~Vdes~ltGEs~p~~k~~~~~~---~v~aGt~v~~g 154 (167)
++++|+||+++++++++|+|||+|.+ ++||++|+||++++|++.||||++||||.|+.| +.++ .+|+||.+.+|
T Consensus 107 a~vlr~dg~~~~V~~~~L~~GDiV~V-~~Gd~IPaDG~vieG~~~VDESaLTGES~PV~K--~~g~~~~~V~aGT~v~~G 183 (675)
T TIGR01497 107 AKLLRDDGAIDKVPADQLKKGDIVLV-EAGDVIPCDGEVIEGVASVDESAITGESAPVIK--ESGGDFASVTGGTRILSD 183 (675)
T ss_pred EEEEeeCCEEEEEEHHHCCCCCEEEE-CCCCEEeeeEEEEEccEEEEcccccCCCCceee--cCCCCcceeecCcEEEee
Confidence 77886339999999999999999999 999999999999999999999999999999999 6665 39999999999
Q ss_pred EeeC
Q psy6097 155 RYHG 158 (167)
Q Consensus 155 ~~~~ 158 (167)
++..
T Consensus 184 ~~~i 187 (675)
T TIGR01497 184 WLVV 187 (675)
T ss_pred EEEE
Confidence 8764
No 24
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=99.91 E-value=4.1e-24 Score=190.17 Aligned_cols=127 Identities=18% Similarity=0.151 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCC-eEEEEecCCeeEEeeCCCcCCCcEEEE
Q psy6097 27 IFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVI 103 (167)
Q Consensus 27 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~~-~~~V~r~~g~~~~i~~~~lv~GDii~v 103 (167)
.+..++++..++.+.+..++.+++++.++.+++.++++|+ .++++....+ +++++|+ |+++++++++|+|||+|.+
T Consensus 191 ~L~~~a~~~a~~~~~~~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~~a~vir~-g~~~~v~~~~l~~GDiv~v 269 (741)
T PRK11033 191 TLMSVAAIGALFIGATAEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPETATRLRD-GEREEVAIADLRPGDVIEV 269 (741)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEC-CEEEEEEHHHCCCCCEEEE
Confidence 3444555555555667778888889999999999999888 6666665554 8999998 9999999999999999999
Q ss_pred ccCCcEEeeeEEEEeeEEEEeCCcccCCCccccccCCCcCEEeeccEEEEEEee
Q psy6097 104 PKHGCTLACDATLLQGNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQARYH 157 (167)
Q Consensus 104 ~~~g~~iP~D~~vl~g~~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g~~~ 157 (167)
++|+++||||+|++|++.||||++|||+.|+.| .+|+.||+||.+.+|..+
T Consensus 270 -~~G~~IP~Dg~vi~g~~~vdes~lTGEs~Pv~k--~~Gd~V~aGt~~~~G~~~ 320 (741)
T PRK11033 270 -AAGGRLPADGKLLSPFASFDESALTGESIPVER--ATGEKVPAGATSVDRLVT 320 (741)
T ss_pred -CCCCEEecceEEEECcEEeecccccCCCCCEec--CCCCeeccCCEEcCceEE
Confidence 999999999999999999999999999999999 999999999999999875
No 25
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.1e-23 Score=185.10 Aligned_cols=112 Identities=23% Similarity=0.364 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCC-eEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEe
Q psy6097 42 YYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQ 118 (167)
Q Consensus 42 ~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~~-~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~ 118 (167)
+..+..+++++.++.+++.+...|+ .++++....| +++++++||++++++.+++++||++.| ++||+||+||+|++
T Consensus 174 f~~aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~~A~~~~~~~~~~~v~v~~v~~GD~v~V-rpGE~IPvDG~V~~ 252 (713)
T COG2217 174 FEEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPKTATVVRGDGEEEEVPVEEVQVGDIVLV-RPGERIPVDGVVVS 252 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEecCCcEEEEEHHHCCCCCEEEE-CCCCEecCCeEEEe
Confidence 3777788888999999998888887 8888888777 887887656689999999999999999 99999999999999
Q ss_pred eEEEEeCCcccCCCccccccCCCcCEEeeccEEEEEEe
Q psy6097 119 GNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQARY 156 (167)
Q Consensus 119 g~~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g~~ 156 (167)
|+..||||++||||.|+.| .+|+.||+||.+.+|.-
T Consensus 253 G~s~vDeS~iTGEs~PV~k--~~Gd~V~aGtiN~~G~l 288 (713)
T COG2217 253 GSSSVDESMLTGESLPVEK--KPGDEVFAGTVNLDGSL 288 (713)
T ss_pred CcEEeecchhhCCCCCEec--CCCCEEeeeEEECCccE
Confidence 9999999999999999999 99999999999998864
No 26
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=99.90 E-value=1.7e-23 Score=192.20 Aligned_cols=135 Identities=16% Similarity=0.175 Sum_probs=114.2
Q ss_pred CCCCccCCCCCCHH----HHHHHHhhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q psy6097 1 YGKNEINVPIQNIS----SLFVLEALNPFYIFQVFTLCVWFAE-----AYYYYTGAIICMSVFGIVSSVIQTRQK-SLHD 70 (167)
Q Consensus 1 yG~N~i~~~~~s~~----~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~-~l~~ 70 (167)
|.+|++.+.|+++| +.+++||..+.++++++.++++++. +.+.+.++++++++++.+.+.++++++ +.++
T Consensus 1 ~~~N~i~tskY~~~~flp~~l~~qf~~~~N~yfl~i~ilq~ip~~s~~~~~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~ 80 (1057)
T TIGR01652 1 FCSNKISTTKYTVLTFLPKNLFEQFKRFANLYFLVVALLQQVPILSPTYRGTSIVPLAFVLIVTAIKEAIEDIRRRRRDK 80 (1057)
T ss_pred CCCCcccCccCcchhhhHHHHHHHHHHHhhHHHHHHHHHHcCCCcCCCCccHhHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 78999999988776 6777888888898888888888874 245556678888889999999999998 3333
Q ss_pred hhcCCCeEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEe-----eEEEEeCCcccCCCccccc
Q psy6097 71 TVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQ-----GNCIVNESMLTVHGALFIM 137 (167)
Q Consensus 71 ~~~~~~~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~-----g~~~Vdes~ltGEs~p~~k 137 (167)
.. +.++++|+|++|+++++++++|+|||+|.+ ++||.+|||+++++ |.|.||||+||||+.|+.|
T Consensus 81 ~~-n~~~~~v~~~~~~~~~i~~~~l~~GDiv~l-~~g~~iPaD~~ll~ss~~~g~~~v~~s~l~GEs~~~~k 150 (1057)
T TIGR01652 81 EV-NNRLTEVLEGHGQFVEIPWKDLRVGDIVKV-KKDERIPADLLLLSSSEPDGVCYVETANLDGETNLKLR 150 (1057)
T ss_pred HH-hCcEEEEECCCCcEEEeeeecccCCCEEEE-cCCCcccceEEEEeccCCCceEEEEeeccCCeecceEe
Confidence 33 334899999757999999999999999999 99999999999997 6799999999999999987
No 27
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.90 E-value=6e-23 Score=184.95 Aligned_cols=114 Identities=19% Similarity=0.260 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCC-eEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEE
Q psy6097 41 YYYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLL 117 (167)
Q Consensus 41 ~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~~-~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl 117 (167)
|+..+..+++++.++.+++.+.+.|+ .++++.+..| +++++|+ |++++++.++|+|||+|.+ ++||+|||||+|+
T Consensus 285 ~~~~~~~i~~~~~~g~~le~~~~~~~~~~~~~L~~l~p~~a~~~~~-~~~~~v~~~~l~~GD~v~v-~~G~~iP~Dg~v~ 362 (834)
T PRK10671 285 YYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTD-EGEKSVPLADVQPGMLLRL-TTGDRVPVDGEIT 362 (834)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeC-CcEEEEEHHHcCCCCEEEE-cCCCEeeeeEEEE
Confidence 34446677788888888888888777 6777776665 8999998 8889999999999999999 9999999999999
Q ss_pred eeEEEEeCCcccCCCccccccCCCcCEEeeccEEEEEEeeC
Q psy6097 118 QGNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQARYHG 158 (167)
Q Consensus 118 ~g~~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g~~~~ 158 (167)
+|++.||||++|||+.|+.| ++|+.||+||.+.+|....
T Consensus 363 ~g~~~vdeS~lTGEs~pv~k--~~gd~V~aGt~~~~G~~~~ 401 (834)
T PRK10671 363 QGEAWLDEAMLTGEPIPQQK--GEGDSVHAGTVVQDGSVLF 401 (834)
T ss_pred EceEEEeehhhcCCCCCEec--CCCCEEEecceecceeEEE
Confidence 99999999999999999999 9999999999999998754
No 28
>KOG0203|consensus
Probab=99.85 E-value=3.4e-22 Score=174.15 Aligned_cols=154 Identities=18% Similarity=0.197 Sum_probs=132.3
Q ss_pred CCCccCCCC-CCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH-
Q psy6097 2 GKNEINVPI-QNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYY-------------TGAIICMSVFGIVSSVIQTRQK- 66 (167)
Q Consensus 2 G~N~i~~~~-~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~~~~~~~~- 66 (167)
|||.++.|+ .+-|.+|.+|+++.|.+++++++++++...+... +.++..+.+++.+..++|+.++
T Consensus 72 G~NaL~Ppk~t~~wikf~kq~f~~~~ill~~~a~l~~~~y~~~~s~~~~~~~~nly~giiL~~vv~vtg~~~~~qe~ks~ 151 (1019)
T KOG0203|consen 72 GPNALTPPKTTPEWIKFLRQLFGGFSILLWIGAILCFVAYGIQASTEDDPSDDNLYLGIVLAAVVIVTGLFSYYQEAKSS 151 (1019)
T ss_pred CCCCCCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCcceEEEEEEEEEEEEEecCCCccchhhH
Confidence 899998765 5788899999999999999999999998654322 3445566677778889999887
Q ss_pred ----HHhhhhcCCCeEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeE-EEEeCCcccCCCcccccc---
Q psy6097 67 ----SLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN-CIVNESMLTVHGALFIMW--- 138 (167)
Q Consensus 67 ----~l~~~~~~~~~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~-~~Vdes~ltGEs~p~~k~--- 138 (167)
+.++++++ .++|+|+ |...++.+.++|+||++.+ +.|+++|||.+++++. |.+|+|++|||++|...+
T Consensus 152 ~im~sF~~l~P~--~~~ViRd-g~k~~i~~eelVvGD~v~v-k~GdrVPADiRiis~~g~~vdnsslTGesEP~~~~~~~ 227 (1019)
T KOG0203|consen 152 KIMDSFKNLVPQ--QALVIRD-GEKMTINAEELVVGDLVEV-KGGDRVPADIRIISATGCKVDNSSLTGESEPQTRSPEF 227 (1019)
T ss_pred HHHHHHhccchh--hheeeec-ceeEEechhhcccccceee-ccCCcccceeEEEEecceeEeccccccccCCccCCccc
Confidence 55666666 5999999 9999999999999999999 9999999999999995 999999999999998772
Q ss_pred -----CCCcCEEeeccEEEEEEeeCC
Q psy6097 139 -----EDVNHTLYCGTVILQARYHGD 159 (167)
Q Consensus 139 -----~~~~~~v~aGt~v~~g~~~~~ 159 (167)
.+..|..|.+|.+++|.++|.
T Consensus 228 t~~~~~Et~Ni~f~st~~veG~~~gi 253 (1019)
T KOG0203|consen 228 THENPLETRNIAFFSTNCVEGTGRGI 253 (1019)
T ss_pred cccCchhheeeeeeeeEEecceEEEE
Confidence 367799999999999999874
No 29
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=99.85 E-value=3.4e-21 Score=164.97 Aligned_cols=104 Identities=28% Similarity=0.525 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHH--HHhhhhc---CCCeEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeEEEEe
Q psy6097 50 CMSVFGIVSSVIQTRQK--SLHDTVN---TVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVN 124 (167)
Q Consensus 50 ~~~~~~~~~~~~~~~~~--~l~~~~~---~~~~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~~~Vd 124 (167)
++.++..+.+.++++++ .++++.+ +.++++++|+ | ++++++++|+|||+|.+ ++||.+||||++++|++.||
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~-g-~~~V~~~~l~~GDiv~v-~~G~~iP~Dg~vl~g~~~vd 80 (499)
T TIGR01494 4 ILVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVLRN-G-WKEIPASDLVPGDIVLV-KSGEIVPADGVLLSGSCFVD 80 (499)
T ss_pred EhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEC-C-eEEEEHHHCCCCCEEEE-CCCCEeeeeEEEEEccEEEE
Confidence 34455556666666665 4444443 3348999998 7 89999999999999999 99999999999999999999
Q ss_pred CCcccCCCccccccCCCcCEEeeccEEEEEEeeC
Q psy6097 125 ESMLTVHGALFIMWEDVNHTLYCGTVILQARYHG 158 (167)
Q Consensus 125 es~ltGEs~p~~k~~~~~~~v~aGt~v~~g~~~~ 158 (167)
||+||||+.|+.| .+++.+|+||.+.+|+...
T Consensus 81 es~LTGEs~pv~k--~~g~~v~~gs~~~~G~~~~ 112 (499)
T TIGR01494 81 ESNLTGESVPVLK--TAGDAVFAGTYVFNGTLIV 112 (499)
T ss_pred cccccCCCCCeee--ccCCccccCcEEeccEEEE
Confidence 9999999999999 8899999999999998753
No 30
>PLN03190 aminophospholipid translocase; Provisional
Probab=99.85 E-value=1.9e-20 Score=172.70 Aligned_cols=134 Identities=18% Similarity=0.176 Sum_probs=112.9
Q ss_pred CCCCccCCCCCCHHHHHHHHhhhHH----HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q psy6097 1 YGKNEINVPIQNISSLFVLEALNPF----YIFQVFTLCVWFAE-----AYYYYTGAIICMSVFGIVSSVIQTRQK-SLHD 70 (167)
Q Consensus 1 yG~N~i~~~~~s~~~~~~~~~~~~~----~i~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~-~l~~ 70 (167)
|..|.+.+.|++++.++.+.++..| ++++++.+++.++. +.+...++++++++++.+.+.++++++ +.++
T Consensus 87 f~~N~i~TsKYt~~tFlP~~L~eQF~r~aN~YFL~I~ilq~ip~~s~~~~~t~~~PL~~vl~v~~ike~~Ed~~r~k~d~ 166 (1178)
T PLN03190 87 FAGNSIRTAKYSVFSFLPRNLFEQFHRVAYIYFLVIAVLNQLPQLAVFGRGASILPLAFVLLVTAVKDAYEDWRRHRSDR 166 (1178)
T ss_pred CCCCeeeccccccHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5679999999999998877776665 77777777776653 245567788999999999999999888 4443
Q ss_pred hhcCCCeEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEe-----eEEEEeCCcccCCCccccc
Q psy6097 71 TVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQ-----GNCIVNESMLTVHGALFIM 137 (167)
Q Consensus 71 ~~~~~~~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~-----g~~~Vdes~ltGEs~p~~k 137 (167)
..+ ..+++|+|+ |+++++++++|+|||+|.+ ++||.+|||+++++ |.|.||+|+||||+.|+.|
T Consensus 167 ~~N-~~~~~v~~~-~~~~~i~~~~i~vGDiv~v-~~ge~iPaD~~ll~Ss~~~G~~~Vdts~LdGEt~~k~k 235 (1178)
T PLN03190 167 IEN-NRLAWVLVD-DQFQEKKWKDIRVGEIIKI-QANDTLPCDMVLLSTSDPTGVAYVQTINLDGESNLKTR 235 (1178)
T ss_pred hhc-CcEEEEEEC-CeEEEEeHHHCCCCCEEEE-CCCCEeeeeEEEEeccCCCceEEEEccccCCeeeeeEe
Confidence 333 348999999 9999999999999999999 99999999999997 7899999999999999988
No 31
>KOG0207|consensus
Probab=99.82 E-value=3e-20 Score=163.36 Aligned_cols=103 Identities=20% Similarity=0.319 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHH--HHhhhhcCCC-eEEEEecCCe-eEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeEEEEeCC
Q psy6097 51 MSVFGIVSSVIQTRQK--SLHDTVNTVD-KVTVKRSKGL-YEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNES 126 (167)
Q Consensus 51 ~~~~~~~~~~~~~~~~--~l~~~~~~~~-~~~V~r~~g~-~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~~~Vdes 126 (167)
++.+..+++-..+.|. .+++++...+ +++++.+ |+ +++|+.+.+++||+|.| .+|++||+||+|++|++.||||
T Consensus 350 fi~lgr~LE~~Ak~kts~alskLmsl~p~~a~ii~~-g~~e~eI~v~lvq~gdivkV-~pG~kiPvDG~Vv~Gss~VDEs 427 (951)
T KOG0207|consen 350 FITLGRWLESLAKGKTSEALSKLMSLAPSKATIIED-GSEEKEIPVDLVQVGDIVKV-KPGEKIPVDGVVVDGSSEVDES 427 (951)
T ss_pred HHHHHHHHHHHhhccchHHHHHHhhcCcccceEeec-CCcceEeeeeeeccCCEEEE-CCCCccccccEEEeCceeechh
Confidence 5555666666666666 7888887776 8888888 65 89999999999999999 9999999999999999999999
Q ss_pred cccCCCccccccCCCcCEEeeccEEEEEEee
Q psy6097 127 MLTVHGALFIMWEDVNHTLYCGTVILQARYH 157 (167)
Q Consensus 127 ~ltGEs~p~~k~~~~~~~v~aGt~v~~g~~~ 157 (167)
.+|||++|+.| +++++|.+||.++.|.-.
T Consensus 428 ~iTGEs~PV~K--k~gs~ViaGsiN~nG~l~ 456 (951)
T KOG0207|consen 428 LITGESMPVPK--KKGSTVIAGSINLNGTLL 456 (951)
T ss_pred hccCCceeccc--CCCCeeeeeeecCCceEE
Confidence 99999999999 999999999999999754
No 32
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=99.65 E-value=5.9e-16 Score=129.90 Aligned_cols=110 Identities=25% Similarity=0.350 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHhhhhcCCCeEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEee
Q psy6097 42 YYYTGAIICMSVFGIVSSVIQTRQK---------SLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLAC 112 (167)
Q Consensus 42 ~~~~~~i~~~~~~~~~~~~~~~~~~---------~l~~~~~~~~~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~ 112 (167)
..|...+.+.++++.++..+.|.-+ ++++..+. ..++.++++|+++.+++.+|+.||+|.+ ..||.||+
T Consensus 62 ~~f~~~i~~~L~fTVlFANfaEa~AEGrgKAqAdsLr~~~~~-~~A~~l~~~g~~~~v~st~Lk~gdiV~V-~age~IP~ 139 (681)
T COG2216 62 RLFNLAITIILWFTVLFANFAEAVAEGRGKAQADSLRKTKTE-TIARLLRADGSIEMVPATELKKGDIVLV-EAGEIIPS 139 (681)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH-HHHHHhcCCCCeeeccccccccCCEEEE-ecCCCccC
Confidence 4444555555555555555554433 33322221 2677788879999999999999999999 89999999
Q ss_pred eEEEEeeEEEEeCCcccCCCccccccCCCc---CEEeeccEEEEEE
Q psy6097 113 DATLLQGNCIVNESMLTVHGALFIMWEDVN---HTLYCGTVILQAR 155 (167)
Q Consensus 113 D~~vl~g~~~Vdes~ltGEs~p~~k~~~~~---~~v~aGt~v~~g~ 155 (167)
||.+++|.+.||||.+||||.|+-| +.| +.|-.||.+++-.
T Consensus 140 DGeVIeG~asVdESAITGESaPVir--esGgD~ssVtGgT~v~SD~ 183 (681)
T COG2216 140 DGEVIEGVASVDESAITGESAPVIR--ESGGDFSSVTGGTRVLSDW 183 (681)
T ss_pred CCeEEeeeeecchhhccCCCcceee--ccCCCcccccCCcEEeeee
Confidence 9999999999999999999999999 665 7799999998754
No 33
>KOG0210|consensus
Probab=99.57 E-value=2.6e-14 Score=123.49 Aligned_cols=156 Identities=18% Similarity=0.268 Sum_probs=112.7
Q ss_pred CCCCccCCCCCCH----HHHHHHHhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6097 1 YGKNEINVPIQNI----SSLFVLEALNPFYIFQVFTLCVWFAEA-----YYYYTGAIICMSVFGIVSSVIQTRQKSLHDT 71 (167)
Q Consensus 1 yG~N~i~~~~~s~----~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~ 71 (167)
|-||++...|+.+ +..+++||...+++++++.++..+... ...+.+.+.+++.++..++..++.++..++.
T Consensus 79 ~~pn~v~nqKyn~~tF~p~vl~~qF~~F~nlyfll~alsQ~ip~~~ig~l~ty~~pl~fvl~itl~keavdd~~r~~rd~ 158 (1051)
T KOG0210|consen 79 FPPNEVRNQKYNIFTFVPAVLFEQFKFFLNLYFLLVALSQLIPALKIGYLSTYWGPLGFVLTITLIKEAVDDLKRRRRDR 158 (1051)
T ss_pred CCCchhhhcccceEEeeHHHHHHHHHHHHHHHHHHHHHHhhCchheecchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4588887766443 345677777777777777777776542 2455667888888888888888888733333
Q ss_pred hcCCCeEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEE-----eeEEEEeCCcccCCCc-----cccc----
Q psy6097 72 VNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLL-----QGNCIVNESMLTVHGA-----LFIM---- 137 (167)
Q Consensus 72 ~~~~~~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl-----~g~~~Vdes~ltGEs~-----p~~k---- 137 (167)
..+..+.+++..+|...+ ++++|++||+|.+ +.++++|||.+++ +|+|.+.+..|+||+. |+..
T Consensus 159 ~~Nse~y~~ltr~~~~~~-~Ss~i~vGDvi~v-~K~~RVPADmilLrTsd~sg~~FiRTDQLDGETDWKLrl~vp~tQ~l 236 (1051)
T KOG0210|consen 159 ELNSEKYTKLTRDGTRRE-PSSDIKVGDVIIV-HKDERVPADMILLRTSDKSGSCFIRTDQLDGETDWKLRLPVPRTQHL 236 (1051)
T ss_pred hhhhhhheeeccCCcccc-cccccccccEEEE-ecCCcCCcceEEEEccCCCCceEEeccccCCcccceeeccchhhccC
Confidence 333334555543265444 9999999999999 8999999999999 5679999999999932 2211
Q ss_pred ------------------------------------cCCCcCEEeeccEEEEEEeeC
Q psy6097 138 ------------------------------------WEDVNHTLYCGTVILQARYHG 158 (167)
Q Consensus 138 ------------------------------------~~~~~~~v~aGt~v~~g~~~~ 158 (167)
..+..|+++|+|.+.+|.+.|
T Consensus 237 ~~~~el~~i~v~Ae~P~kdIh~F~Gt~~~~d~~~~~~LsventLWanTVvAs~t~~g 293 (1051)
T KOG0210|consen 237 TEDSELMEISVYAEKPQKDIHSFVGTFTITDSDKPESLSVENTLWANTVVASGTAIG 293 (1051)
T ss_pred CcccchheEEEeccCcchhhHhhEEEEEEecCCCCCcccccceeeeeeeEecCcEEE
Confidence 024578999999999998765
No 34
>KOG0206|consensus
Probab=99.47 E-value=6.9e-14 Score=127.67 Aligned_cols=135 Identities=19% Similarity=0.282 Sum_probs=110.8
Q ss_pred CCCCccCCCCCCHHHHHHHHhhhHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhh
Q psy6097 1 YGKNEINVPIQNISSLFVLEALNPF----YIFQVFTLCVWFAE----AYYYYTGAIICMSVFGIVSSVIQTRQK-SLHDT 71 (167)
Q Consensus 1 yG~N~i~~~~~s~~~~~~~~~~~~~----~i~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~-~l~~~ 71 (167)
|-.|++.+.|++++.++.+++++.| ++++++.+++.++. +.+...+.+++++.++.+++.++++|+ +.++.
T Consensus 32 ~~~N~i~TtKYt~~tFlPk~l~eQf~r~aN~yFl~~~il~~ip~~~~~~~~~~~pl~~vl~~t~iKd~~eD~rR~~~D~~ 111 (1151)
T KOG0206|consen 32 YCDNRISTTKYTLFTFLPKNLFEQFHRVANLYFLFIAILQFIPLSPFNPYTTLVPLLFVLGITAIKDAIEDYRRHKQDKE 111 (1151)
T ss_pred ccCCeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHcCcccccCccceeeceeeeehHHHHHHHHhhhhhhhccHH
Confidence 4469999999998888877777766 77777777777653 335667778999999999999999999 55555
Q ss_pred hcCCCeEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEee-----EEEEeCCcccCCCccccc
Q psy6097 72 VNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQG-----NCIVNESMLTVHGALFIM 137 (167)
Q Consensus 72 ~~~~~~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g-----~~~Vdes~ltGEs~p~~k 137 (167)
+++ .++.|.++++.++...++++++||+|.+ ..++.+|||.++++. .|+|+.++|+||+....|
T Consensus 112 iN~-~~~~v~~~~~~~~~~~wk~~~vGd~v~v-~~~~~~paD~llLsss~~~~~cyveT~nLDGEtnLK~k 180 (1151)
T KOG0206|consen 112 VNN-RKVEVLRGDGCFVEKKWKDVRVGDIVRV-EKDEFVPADLLLLSSSDEDGICYVETANLDGETNLKVK 180 (1151)
T ss_pred hhc-ceeEEecCCceeeeeccceeeeeeEEEe-ccCCccccceEEecCCCCCceeEEEEeecCCcccccee
Confidence 544 3899999744589999999999999999 899999999999954 499999999999887665
No 35
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=98.29 E-value=1.7e-06 Score=53.97 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=35.2
Q ss_pred CCCCccCCC-CCCHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy6097 1 YGKNEINVP-IQNISSLFVLEALNPFYIFQVFTLCVWFAE 39 (167)
Q Consensus 1 yG~N~i~~~-~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~ 39 (167)
||+|+++.+ +++++.++++++.+|+.++++++++++++.
T Consensus 23 ~G~N~l~~~~~~s~~~~~l~~~~~p~~~iL~~~a~is~~~ 62 (64)
T smart00831 23 YGPNELPPPKKRSPLLRFLRQFHNPLIYILLAAAVLSALL 62 (64)
T ss_pred hCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 899999876 489999999999999999999999888764
No 36
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=98.24 E-value=1.6e-06 Score=55.03 Aligned_cols=36 Identities=25% Similarity=0.453 Sum_probs=32.5
Q ss_pred CCCCccC-CCCCCHHHHHHHHhhhHHHHHHHHHHHHH
Q psy6097 1 YGKNEIN-VPIQNISSLFVLEALNPFYIFQVFTLCVW 36 (167)
Q Consensus 1 yG~N~i~-~~~~s~~~~~~~~~~~~~~i~~~~~~~~~ 36 (167)
||+|+++ .++++++++++++|.+|+.++++++++++
T Consensus 33 ~G~N~l~~~~~~s~~~~~~~~f~~~~~~lL~~aailS 69 (69)
T PF00690_consen 33 YGPNELPEPKKKSLWRIFLKQFKNPFIILLLIAAILS 69 (69)
T ss_dssp HSSSSTTTTTSSSHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred cccccccccccCcHHHHHHHHHHhHHHHHHHHHHHHC
Confidence 8999995 46799999999999999999999998875
No 37
>KOG4383|consensus
Probab=93.56 E-value=0.15 Score=45.91 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=34.9
Q ss_pred EEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEee
Q psy6097 79 TVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQG 119 (167)
Q Consensus 79 ~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g 119 (167)
+.+|| |...+++..-||.||+|.+ ++|+.-||.+.=+.+
T Consensus 159 ~afRD-Ghlm~lP~~LLVeGDiIa~-RPGQeafan~~g~~d 197 (1354)
T KOG4383|consen 159 SAFRD-GHLMELPRILLVEGDIIAF-RPGQEAFANCEGFDD 197 (1354)
T ss_pred HHhcc-CeeeecceeEEEeccEEEe-cCCccccccccccCC
Confidence 46788 9999999999999999999 999999998877766
No 38
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=86.32 E-value=0.37 Score=31.59 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=18.6
Q ss_pred EeeCCCcCCCcEEEEccCCcEEe
Q psy6097 89 EVPTTHLVPGDIIVIPKHGCTLA 111 (167)
Q Consensus 89 ~i~~~~lv~GDii~v~~~g~~iP 111 (167)
.+...+|.+||.|.+.++||.||
T Consensus 44 ~i~~~~i~~Gd~V~V~raGdVIP 66 (82)
T PF03120_consen 44 YIKELDIRIGDTVLVTRAGDVIP 66 (82)
T ss_dssp HHHHTT-BBT-EEEEEEETTTEE
T ss_pred HHHHcCCCCCCEEEEEECCCccc
Confidence 45578999999999988999999
No 39
>PRK11507 ribosome-associated protein; Provisional
Probab=85.47 E-value=1.6 Score=27.65 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=22.4
Q ss_pred EEecCCeeEEeeCCCcCCCcEEEEccCCcE
Q psy6097 80 VKRSKGLYEEVPTTHLVPGDIIVIPKHGCT 109 (167)
Q Consensus 80 V~r~~g~~~~i~~~~lv~GDii~v~~~g~~ 109 (167)
|..| |+.....-+.|+|||+|.+ +|+.
T Consensus 39 V~VN-Geve~rRgkKl~~GD~V~~--~g~~ 65 (70)
T PRK11507 39 VKVD-GAVETRKRCKIVAGQTVSF--AGHS 65 (70)
T ss_pred eEEC-CEEecccCCCCCCCCEEEE--CCEE
Confidence 5667 8888899999999999999 3544
No 40
>KOG0210|consensus
Probab=81.24 E-value=14 Score=33.85 Aligned_cols=93 Identities=13% Similarity=0.218 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHh-----hhhcCCCe
Q psy6097 10 IQNISSLFVLEALNPFYIFQVFTLCV-----WFAEAYYYYTGAIICMSVFGIVSSVIQTRQK--SLH-----DTVNTVDK 77 (167)
Q Consensus 10 ~~s~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~-----~~~~~~~~ 77 (167)
.+.....-++.|++.++++..+..+. .....||...+.++.++++....+.++++++ ..+ ++.... .
T Consensus 95 ~p~vl~~qF~~F~nlyfll~alsQ~ip~~~ig~l~ty~~pl~fvl~itl~keavdd~~r~~rd~~~Nse~y~~ltr~~-~ 173 (1051)
T KOG0210|consen 95 VPAVLFEQFKFFLNLYFLLVALSQLIPALKIGYLSTYWGPLGFVLTITLIKEAVDDLKRRRRDRELNSEKYTKLTRDG-T 173 (1051)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHhhCchheecchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhheeeccCC-c
Confidence 34455566788888887766665532 3367788888899999999999999998887 111 122221 1
Q ss_pred EEE----EecCCeeEEeeCCCcCCCcEEEEcc
Q psy6097 78 VTV----KRSKGLYEEVPTTHLVPGDIIVIPK 105 (167)
Q Consensus 78 ~~V----~r~~g~~~~i~~~~lv~GDii~v~~ 105 (167)
+.. +.- |..+.+.-++=+|-|+|.+ +
T Consensus 174 ~~~~Ss~i~v-GDvi~v~K~~RVPADmilL-r 203 (1051)
T KOG0210|consen 174 RREPSSDIKV-GDVIIVHKDERVPADMILL-R 203 (1051)
T ss_pred cccccccccc-ccEEEEecCCcCCcceEEE-E
Confidence 111 122 6778888999999999998 6
No 41
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=80.28 E-value=4.5 Score=24.00 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=27.6
Q ss_pred eEEEEecCCeeEEee-CCCcCCCcEEEEccCCcEEe
Q psy6097 77 KVTVKRSKGLYEEVP-TTHLVPGDIIVIPKHGCTLA 111 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~-~~~lv~GDii~v~~~g~~iP 111 (167)
++.|+.+||++..++ ..+..+||.|.+ ...+..+
T Consensus 7 ~aiVlT~dGeF~~ik~~~~~~vG~eI~~-~~~~~~~ 41 (56)
T PF12791_consen 7 YAIVLTPDGEFIKIKRKPGMEVGQEIEF-DEKDIIN 41 (56)
T ss_pred EEEEEcCCCcEEEEeCCCCCcccCEEEE-echhhcc
Confidence 788999889999988 446999999999 6666543
No 42
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=79.00 E-value=1 Score=40.32 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=23.6
Q ss_pred eeCCCcCCCcEEEEccCCcEEe-eeEEEEe
Q psy6097 90 VPTTHLVPGDIIVIPKHGCTLA-CDATLLQ 118 (167)
Q Consensus 90 i~~~~lv~GDii~v~~~g~~iP-~D~~vl~ 118 (167)
|.-.+|++||-|.|.++||.|| +++++.+
T Consensus 363 I~rkdIrIGDtV~V~kAGdVIP~V~~Vv~e 392 (667)
T COG0272 363 IKRKDIRIGDTVVVRKAGDVIPQVVGVVLE 392 (667)
T ss_pred HHhcCCCCCCEEEEEecCCCCcceeeeecc
Confidence 4468999999999988999999 5655543
No 43
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=75.68 E-value=2.4 Score=26.47 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=12.8
Q ss_pred EEecCCeeEEeeCCCcCCCcEEEE
Q psy6097 80 VKRSKGLYEEVPTTHLVPGDIIVI 103 (167)
Q Consensus 80 V~r~~g~~~~i~~~~lv~GDii~v 103 (167)
|..| |+...-.-+.|++||+|.+
T Consensus 35 V~VN-Ge~e~rrg~Kl~~GD~V~~ 57 (65)
T PF13275_consen 35 VKVN-GEVETRRGKKLRPGDVVEI 57 (65)
T ss_dssp HEET-TB----SS----SSEEEEE
T ss_pred eEEC-CEEccccCCcCCCCCEEEE
Confidence 5566 8888888999999999999
No 44
>PF15584 Imm44: Immunity protein 44
Probab=70.60 E-value=1.8 Score=28.87 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=14.1
Q ss_pred CcEEEEccCCcEEeeeEEE
Q psy6097 98 GDIIVIPKHGCTLACDATL 116 (167)
Q Consensus 98 GDii~v~~~g~~iP~D~~v 116 (167)
.+-.+| ..|++|||||+=
T Consensus 14 ~~~~~I-~SG~~iP~~GIw 31 (94)
T PF15584_consen 14 SEGGVI-KSGQEIPCDGIW 31 (94)
T ss_pred CCCCEE-ecCCCcccCCeE
Confidence 344567 789999999986
No 45
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=70.29 E-value=3.5 Score=31.97 Aligned_cols=35 Identities=31% Similarity=0.555 Sum_probs=19.3
Q ss_pred eEEEEecCCeeEEee-------CCCcCCCcEEEEccCCcEEe
Q psy6097 77 KVTVKRSKGLYEEVP-------TTHLVPGDIIVIPKHGCTLA 111 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~-------~~~lv~GDii~v~~~g~~iP 111 (167)
.+.|++.||+.+..+ ..++.|||+|+||...+..|
T Consensus 168 ~v~VI~pdG~v~~~~~a~Wn~~~~~l~PG~~I~Vp~~~~~~~ 209 (229)
T PF06251_consen 168 RVYVIQPDGSVQKVPVAYWNNQHQELAPGATIYVPFDTSSLP 209 (229)
T ss_dssp EEEEE-TTS-EEEEE-STTT--EEE--TT-EEEE-B-TTTS-
T ss_pred cEEEEeCCCcEEEcceehhccCCCCCCCCCEEEEcCCccccC
Confidence 788998888766554 35789999999954344333
No 46
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=67.91 E-value=2.2 Score=38.60 Aligned_cols=27 Identities=19% Similarity=0.448 Sum_probs=21.8
Q ss_pred eeCCCcCCCcEEEEccCCcEEe-eeEEE
Q psy6097 90 VPTTHLVPGDIIVIPKHGCTLA-CDATL 116 (167)
Q Consensus 90 i~~~~lv~GDii~v~~~g~~iP-~D~~v 116 (167)
+...+|.+||.|.|.++||.|| .+.++
T Consensus 360 I~~~di~iGD~V~V~raGdVIP~I~~v~ 387 (669)
T PRK14350 360 IDSIGLNVGDVVKISRRGDVIPAVELVI 387 (669)
T ss_pred HHHcCCCCCCEEEEEecCCCCCceeeec
Confidence 4567899999999989999999 34433
No 47
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=67.40 E-value=14 Score=23.68 Aligned_cols=29 Identities=31% Similarity=0.370 Sum_probs=23.8
Q ss_pred EEEecCCeeEEeeCCCcCCCcEEEEccCCcEE
Q psy6097 79 TVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTL 110 (167)
Q Consensus 79 ~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~i 110 (167)
.|+.| |+.+...-+.|+.||+|.+ +|+..
T Consensus 38 ~V~vN-Ge~EtRRgkKlr~gd~V~i--~~~~~ 66 (73)
T COG2501 38 EVKVN-GEVETRRGKKLRDGDVVEI--PGQRY 66 (73)
T ss_pred eEEEC-CeeeeccCCEeecCCEEEE--CCEEE
Confidence 46778 8888899999999999999 35443
No 48
>smart00532 LIGANc Ligase N family.
Probab=66.11 E-value=2.7 Score=36.09 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.4
Q ss_pred eeCCCcCCCcEEEEccCCcEEee
Q psy6097 90 VPTTHLVPGDIIVIPKHGCTLAC 112 (167)
Q Consensus 90 i~~~~lv~GDii~v~~~g~~iP~ 112 (167)
+...+|.+||.|.|.++||.||.
T Consensus 358 i~~~~i~iGd~V~V~raGdVIP~ 380 (441)
T smart00532 358 IEEKDIRIGDTVVVRKAGDVIPK 380 (441)
T ss_pred HHHcCCCCCCEEEEEECCCcCcc
Confidence 55789999999999899999993
No 49
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=65.32 E-value=9 Score=26.03 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=23.8
Q ss_pred EEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEE
Q psy6097 80 VKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLL 117 (167)
Q Consensus 80 V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl 117 (167)
|.-| |+.. -+++++++||++.+ .-|... -...|+
T Consensus 36 V~vN-G~~a-KpS~~VK~GD~l~i-~~~~~~-~~v~Vl 69 (100)
T COG1188 36 VKVN-GQRA-KPSKEVKVGDILTI-RFGNKE-FTVKVL 69 (100)
T ss_pred EEEC-CEEc-ccccccCCCCEEEE-EeCCcE-EEEEEE
Confidence 3445 6654 78999999999999 766553 344444
No 50
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=65.16 E-value=23 Score=24.96 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=25.9
Q ss_pred EEEeCCcccCCCccccccCCCcCEEeeccEEEEEE
Q psy6097 121 CIVNESMLTVHGALFIMWEDVNHTLYCGTVILQAR 155 (167)
Q Consensus 121 ~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g~ 155 (167)
+-+|+..|.||-.-... +.|+.|-+|+.+.+-.
T Consensus 70 iGidTv~l~g~gF~~~v--k~Gd~V~~G~~l~~~D 102 (124)
T cd00210 70 IGIDTVKLNGEGFTSHV--EEGQRVKQGDKLLEFD 102 (124)
T ss_pred eeeeeeecCCCceEEEe--cCCCEEcCCCEEEEEc
Confidence 45688889898766555 7999999999988754
No 51
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=63.21 E-value=3 Score=37.70 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=22.0
Q ss_pred eeCCCcCCCcEEEEccCCcEEe-eeEEE
Q psy6097 90 VPTTHLVPGDIIVIPKHGCTLA-CDATL 116 (167)
Q Consensus 90 i~~~~lv~GDii~v~~~g~~iP-~D~~v 116 (167)
+...+|.+||.|.|.++||.|| .+.++
T Consensus 363 i~~~~i~iGD~V~V~raGdVIP~i~~vv 390 (665)
T PRK07956 363 IERKDIRIGDTVVVRRAGDVIPEVVGVV 390 (665)
T ss_pred HHHcCCCCCCEEEEEECCCccceeeeee
Confidence 4467999999999988999999 44444
No 52
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.44 E-value=11 Score=25.72 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=18.8
Q ss_pred CCCcCCCcEEEEccCCcEEeeeEEEE
Q psy6097 92 TTHLVPGDIIVIPKHGCTLACDATLL 117 (167)
Q Consensus 92 ~~~lv~GDii~v~~~g~~iP~D~~vl 117 (167)
-+.+.|||.|.. +|+.+|+-.+=+
T Consensus 31 rr~ik~GD~IiF--~~~~l~v~V~~v 54 (111)
T COG4043 31 RRQIKPGDKIIF--NGDKLKVEVIDV 54 (111)
T ss_pred hcCCCCCCEEEE--cCCeeEEEEEEE
Confidence 357899999999 578999866554
No 53
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=61.96 E-value=31 Score=21.60 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=22.7
Q ss_pred eEEEEecCCeeEEee---CCCcCCCcEEEEccCCcE
Q psy6097 77 KVTVKRSKGLYEEVP---TTHLVPGDIIVIPKHGCT 109 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~---~~~lv~GDii~v~~~g~~ 109 (167)
.++|-.+ |..++++ ..++.|||-+.+ +.|.-
T Consensus 18 ~A~v~~~-G~~~~V~~~lv~~v~~Gd~VLV-HaG~A 51 (68)
T PF01455_consen 18 MAVVDFG-GVRREVSLALVPDVKVGDYVLV-HAGFA 51 (68)
T ss_dssp EEEEEET-TEEEEEEGTTCTSB-TT-EEEE-ETTEE
T ss_pred EEEEEcC-CcEEEEEEEEeCCCCCCCEEEE-ecChh
Confidence 6677677 8888886 566889999999 88854
No 54
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=59.46 E-value=18 Score=30.16 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=26.7
Q ss_pred eEEEEecCCeeEEeeCCC----------cCCCcEEEEccCCcEEeeeEEE
Q psy6097 77 KVTVKRSKGLYEEVPTTH----------LVPGDIIVIPKHGCTLACDATL 116 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~~~~----------lv~GDii~v~~~g~~iP~D~~v 116 (167)
.+++.|+ |+...++..+ |++||+|.|++....+-+-|.+
T Consensus 199 ~V~l~R~-~~~~~i~l~dL~~~~~~ni~L~~GDvI~V~~~~~~v~V~Gav 247 (355)
T PRK15175 199 EVHVTRQ-QHYFTARLSDIYQYPGLDIALQPDDRITLRQVTEYVNVLGAA 247 (355)
T ss_pred EEEEEEC-CEEEEEEHHHHhhCCcCCcEeCCCCEEEEccCCCEEEEEEee
Confidence 6888898 7766654332 6799999995446666666655
No 55
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=57.81 E-value=6.7 Score=31.97 Aligned_cols=38 Identities=18% Similarity=0.401 Sum_probs=28.0
Q ss_pred HhhhhcCCCeEEEEecCCeeEEeeCCCcCCCcEEEEccCCc
Q psy6097 68 LHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGC 108 (167)
Q Consensus 68 l~~~~~~~~~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~ 108 (167)
++.++++..+.++.+.|| ..++..+|.|||-+.+ ...+
T Consensus 323 i~tiLQNAETIkLv~~dG--~pvSV~eLk~GD~vlv-~~ee 360 (376)
T COG1465 323 ISTILQNAETIKLVNPDG--EPVSVAELKPGDEVLV-YLEE 360 (376)
T ss_pred EEEEeccceeEEEEcCCC--cEeeeEecCCCCEEEE-Eehh
Confidence 444555555777777766 5789999999999998 6544
No 56
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=57.71 E-value=6.2 Score=34.99 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=19.8
Q ss_pred eeCCCcCCCcEEEEccCCcEEee
Q psy6097 90 VPTTHLVPGDIIVIPKHGCTLAC 112 (167)
Q Consensus 90 i~~~~lv~GDii~v~~~g~~iP~ 112 (167)
+.-.+|.+||.|.|.++||.||.
T Consensus 355 i~~~~I~iGD~V~V~raGdVIP~ 377 (562)
T PRK08097 355 WQQWDIAPGDQVLVSLAGQGIPR 377 (562)
T ss_pred HHHcCCCCCCEEEEEecCCCCcc
Confidence 34678999999999899999994
No 57
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=57.47 E-value=4.8 Score=36.55 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=22.6
Q ss_pred eeCCCcCCCcEEEEccCCcEEe-eeEEEE
Q psy6097 90 VPTTHLVPGDIIVIPKHGCTLA-CDATLL 117 (167)
Q Consensus 90 i~~~~lv~GDii~v~~~g~~iP-~D~~vl 117 (167)
+...+|.+||.|.|.++|+.|| +..++.
T Consensus 385 i~~~di~iGD~V~V~raGdVIPkI~~vv~ 413 (689)
T PRK14351 385 IEELGVNVGDRVRVKRAGDVIPYVEEVVE 413 (689)
T ss_pred HHHcCCCCCCEEEEEecCCccceeeeeec
Confidence 5578999999999988999999 444443
No 58
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=56.14 E-value=15 Score=23.76 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=16.0
Q ss_pred CeeEEeeCCCcCCCcEEEE
Q psy6097 85 GLYEEVPTTHLVPGDIIVI 103 (167)
Q Consensus 85 g~~~~i~~~~lv~GDii~v 103 (167)
+...++.+++|++||.+.+
T Consensus 80 ~~~~w~~a~~l~~gd~v~~ 98 (100)
T smart00306 80 GKLVWVFASELKPGDYVLV 98 (100)
T ss_pred CcEEEEEHHHCCCCCEEEe
Confidence 5556888999999999987
No 59
>PRK04980 hypothetical protein; Provisional
Probab=55.53 E-value=26 Score=23.89 Aligned_cols=28 Identities=21% Similarity=0.495 Sum_probs=23.1
Q ss_pred CCCcCCCcEEEEcc--CCcEEeeeEEEEeeE
Q psy6097 92 TTHLVPGDIIVIPK--HGCTLACDATLLQGN 120 (167)
Q Consensus 92 ~~~lv~GDii~v~~--~g~~iP~D~~vl~g~ 120 (167)
....+|||++.| . .+.+.-|+..+++=.
T Consensus 29 e~~~~~G~~~~V-~~~e~g~~~c~ieI~sV~ 58 (102)
T PRK04980 29 ESHFKPGDVLRV-GTFEDDRYFCTIEVLSVS 58 (102)
T ss_pred ccCCCCCCEEEE-EECCCCcEEEEEEEEEEE
Confidence 346899999999 6 778888999998754
No 60
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=55.25 E-value=5.4 Score=35.97 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.8
Q ss_pred eeCCCcCCCcEEEEccCCcEEe
Q psy6097 90 VPTTHLVPGDIIVIPKHGCTLA 111 (167)
Q Consensus 90 i~~~~lv~GDii~v~~~g~~iP 111 (167)
+...+|.+||.|.|.++||.||
T Consensus 351 i~~~~i~iGD~V~V~raGdVIP 372 (652)
T TIGR00575 351 IEELDIRIGDTVVVRKAGDVIP 372 (652)
T ss_pred HHHcCCCCCCEEEEEecCCcCc
Confidence 4467999999999989999999
No 61
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=54.58 E-value=2e+02 Score=27.32 Aligned_cols=141 Identities=12% Similarity=0.097 Sum_probs=73.9
Q ss_pred CHHHHHHHHhhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HH--h---
Q psy6097 12 NISSLFVLEALNPFYIFQVFTLCVW-------------FAEAYYYYTGAIICMSVFGIVSSVIQT-RQK---SL--H--- 69 (167)
Q Consensus 12 s~~~~~~~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~---~l--~--- 69 (167)
-+++-|.+.+.-.+.+..+++++++ -+.+.....++++++++++.+.++.++ ..+ +. +
T Consensus 89 ~~~~~f~~~~~~~l~~~ails~~~~~~~~~~~~~~~~~~~~~~~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~ 168 (941)
T TIGR01517 89 IVWAALSDQTLILLSVAAVVSLVLGLPEPGEGKADTETGWIEGVAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKI 168 (941)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHhhcccccccCccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCce
Confidence 3555666666555555556665544 233333334445555555555554433 222 21 1
Q ss_pred hhhcCCCeEEEEecC---CeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeEE-EEeCCcccCCCccccccCCCcCEE
Q psy6097 70 DTVNTVDKVTVKRSK---GLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNC-IVNESMLTVHGALFIMWEDVNHTL 145 (167)
Q Consensus 70 ~~~~~~~~~~V~r~~---g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~~-~Vdes~ltGEs~p~~k~~~~~~~v 145 (167)
...+......+-.++ |....+...+.+|-|.+.+ + |...-+|=-.+.|+. -++-. .|+..-+ -.|..+
T Consensus 169 ~ViRdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~li-~-g~~l~VdES~LTGES~pv~K~--~~~~n~v----~~GT~v 240 (941)
T TIGR01517 169 AVIRGGQEQQISIHDIVVGDIVSLSTGDVVPADGVFI-S-GLSLEIDESSITGESDPIKKG--APKDSFL----LSGTVV 240 (941)
T ss_pred EEEECCEEEEEeHHHCCCCCEEEECCCCEecccEEEE-E-cCcEEEEecccCCCCCccccc--CCCCceE----EeCCeE
Confidence 112222123332221 7889999999999999999 4 544556777777742 22221 1222222 466777
Q ss_pred eeccEEEEEEeeCCC
Q psy6097 146 YCGTVILQARYHGDE 160 (167)
Q Consensus 146 ~aGt~v~~g~~~~~~ 160 (167)
-.|+-..-..+.|..
T Consensus 241 ~~G~~~~iV~~tG~~ 255 (941)
T TIGR01517 241 NEGSGRMLVTAVGVN 255 (941)
T ss_pred EeeEEEEEEEEeCCC
Confidence 777766555555543
No 62
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=54.45 E-value=46 Score=23.35 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=26.2
Q ss_pred EEEeCCcccCCCccccccCCCcCEEeeccEEEEEE
Q psy6097 121 CIVNESMLTVHGALFIMWEDVNHTLYCGTVILQAR 155 (167)
Q Consensus 121 ~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g~ 155 (167)
.-+|+..|.||-.-... +.|+.|-+|..+++=.
T Consensus 70 iGidTV~L~G~gF~~~v--~~Gd~V~~G~~l~~~D 102 (121)
T TIGR00830 70 IGIDTVKLNGEGFTSHV--EEGQRVKKGDPLLEFD 102 (121)
T ss_pred eeeceeecCCCceEEEe--cCCCEEcCCCEEEEEc
Confidence 45788999998766555 7899999999988754
No 63
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=54.45 E-value=59 Score=31.48 Aligned_cols=40 Identities=8% Similarity=0.154 Sum_probs=20.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6097 17 FVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGI 56 (167)
Q Consensus 17 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 56 (167)
|..+..+...++++.+++.|+++..++-.+.+.+++..+.
T Consensus 150 ~y~~w~qs~~i~l~~~v~Swifg~~~fs~~slffii~~~~ 189 (1227)
T COG5038 150 FYGDWYQSVAIVLIGSVASWIFGYLGFSFASLFFIILVTM 189 (1227)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445666666666666555444444444444333
No 64
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=53.78 E-value=15 Score=30.57 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=24.2
Q ss_pred hhcCCCeEEEEecCCeeEEeeCCCcCCCcEEEEcc
Q psy6097 71 TVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPK 105 (167)
Q Consensus 71 ~~~~~~~~~V~r~~g~~~~i~~~~lv~GDii~v~~ 105 (167)
++++..++++.++|| ..++..+|+|||.|.+ .
T Consensus 294 iLQnaetIrlv~~dG--~~vsVt~Lk~GD~VL~-~ 325 (344)
T PRK02290 294 ILQNAETIRLVTPDG--KPVSVVDLKPGDEVLG-Y 325 (344)
T ss_pred EEecCcEEEEECCCC--CEeeeeecCCCCEEEE-E
Confidence 344444777777766 3789999999999999 5
No 65
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=49.87 E-value=14 Score=26.12 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=17.0
Q ss_pred EEeeCCCcCCCcEEEEccCCcEEeeeEE
Q psy6097 88 EEVPTTHLVPGDIIVIPKHGCTLACDAT 115 (167)
Q Consensus 88 ~~i~~~~lv~GDii~v~~~g~~iP~D~~ 115 (167)
.++.+++|++||.+.- ..|....+..+
T Consensus 70 gWv~A~~L~~GD~L~~-~~G~~~~v~~i 96 (130)
T PF07591_consen 70 GWVEAEDLKVGDRLLT-ADGSWVTVTSI 96 (130)
T ss_dssp --EEGGG--TTSEEEE-E-SSEEEEE--
T ss_pred hhhhHhhCCCCCEEEc-CCCCEEEEEEE
Confidence 4788999999999999 78887655544
No 66
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=48.46 E-value=19 Score=29.99 Aligned_cols=31 Identities=26% Similarity=0.534 Sum_probs=23.6
Q ss_pred hcCCCeEEEEecCCeeEEeeCCCcCCCcEEEEcc
Q psy6097 72 VNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPK 105 (167)
Q Consensus 72 ~~~~~~~~V~r~~g~~~~i~~~~lv~GDii~v~~ 105 (167)
+++..++++.+.+| ..++..+|+|||.|.+ .
T Consensus 305 lQnaetIRlv~p~G--~~vsVt~Lk~GD~vL~-~ 335 (354)
T PF01959_consen 305 LQNAETIRLVGPDG--EPVSVTELKPGDEVLV-Y 335 (354)
T ss_pred EecCcEEEEECCCC--CEeeeeecCCCCEEEE-E
Confidence 33444777777755 5789999999999998 5
No 67
>PF06820 Phage_fiber_C: Putative prophage tail fibre C-terminus; InterPro: IPR009640 This entry represents the C terminus of phage 933W tail fibre protein. This domain is found together with conserved RLGP motif. The characteristics of the protein distribution suggest prophage matches.
Probab=46.56 E-value=27 Score=21.30 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=24.4
Q ss_pred cCCCcEEEEccCCcEEe-eeEEEEeeEEEEeCC
Q psy6097 95 LVPGDIIVIPKHGCTLA-CDATLLQGNCIVNES 126 (167)
Q Consensus 95 lv~GDii~v~~~g~~iP-~D~~vl~g~~~Vdes 126 (167)
|-|+||+.. .....+| -||.++.|-...+..
T Consensus 5 lgpa~ile~-nsnG~~P~tdg~liT~ltfL~pk 36 (64)
T PF06820_consen 5 LGPADILES-NSNGWFPETDGRLITGLTFLDPK 36 (64)
T ss_pred cCchheeee-cCCccccCCCcceEeeeEEeccc
Confidence 568999999 7777888 788999887666544
No 68
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=44.97 E-value=80 Score=23.49 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=36.2
Q ss_pred CCcEEEEccCCcE--EeeeEEEE--------------ee-E----EEEeCCcccCCCccccccCCCcCEEeeccEEEE
Q psy6097 97 PGDIIVIPKHGCT--LACDATLL--------------QG-N----CIVNESMLTVHGALFIMWEDVNHTLYCGTVILQ 153 (167)
Q Consensus 97 ~GDii~v~~~g~~--iP~D~~vl--------------~g-~----~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~ 153 (167)
.||=+.+.+.+.. -||||.+. +| . .=+|+-.|.||-.-... +.|+.|-+|+.+++
T Consensus 47 mGdGvAI~P~~~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLIHiGiDTV~L~G~gF~~~V--k~Gd~Vk~G~~L~~ 122 (169)
T PRK09439 47 VGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIA--EEGQRVKVGDPIIE 122 (169)
T ss_pred ccceEEEEccCCEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEEEEeecccccCCCceEEEe--cCCCEEeCCCEEEE
Confidence 4666666222333 39999996 13 1 45688999998655444 67888888887765
No 69
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=42.88 E-value=1.5e+02 Score=28.39 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=27.7
Q ss_pred CeeEEeeCCCcCCCcEEEEccCCc---EEeeeEEEEeeE
Q psy6097 85 GLYEEVPTTHLVPGDIIVIPKHGC---TLACDATLLQGN 120 (167)
Q Consensus 85 g~~~~i~~~~lv~GDii~v~~~g~---~iP~D~~vl~g~ 120 (167)
|..+.+...|.+|-|.+.+ ...+ ..-+|--.+.|.
T Consensus 107 GDiv~l~~g~~iPaD~~ll-~ss~~~g~~~v~~s~l~GE 144 (1057)
T TIGR01652 107 GDIVKVKKDERIPADLLLL-SSSEPDGVCYVETANLDGE 144 (1057)
T ss_pred CCEEEEcCCCcccceEEEE-eccCCCceEEEEeeccCCe
Confidence 7889999999999999999 6432 355677777774
No 70
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=41.15 E-value=21 Score=35.00 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=23.2
Q ss_pred eEEEEecCCeeEEeeCCCcCCCcEEEEc
Q psy6097 77 KVTVKRSKGLYEEVPTTHLVPGDIIVIP 104 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~~~~lv~GDii~v~ 104 (167)
.+.++++ |+|++..+.+|+|||.+.+|
T Consensus 989 PVLv~~~-Gk~i~K~A~dlK~GD~vvIP 1015 (1627)
T PRK14715 989 PVMVYEN-GKFIKKRAMDVKEGDLMLIP 1015 (1627)
T ss_pred ceEEecc-CccceeehhhcCcCceeecc
Confidence 4556677 89999999999999999993
No 71
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=41.13 E-value=84 Score=21.62 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=21.0
Q ss_pred eEEEEecCCeeEEeeCCCcCCCcEEEEccC---CcEEeeeEE
Q psy6097 77 KVTVKRSKGLYEEVPTTHLVPGDIIVIPKH---GCTLACDAT 115 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~~~~lv~GDii~v~~~---g~~iP~D~~ 115 (167)
++.+.-+|.++ +++.|||.|.+ .. |+.+.+...
T Consensus 19 tiEiRlnD~kr-----~~ikvGD~I~f-~~~~~~~~l~v~V~ 54 (109)
T cd06555 19 TIEIRLNDEKR-----QQIKVGDKILF-NDLDTGQQLLVKVV 54 (109)
T ss_pred EEEEEecccch-----hcCCCCCEEEE-EEcCCCcEEEEEEE
Confidence 45555554333 57999999999 66 445555433
No 72
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=40.93 E-value=51 Score=23.45 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=35.9
Q ss_pred CCCcEEEEccCCcE--EeeeEEEE--------------ee-E----EEEeCCcccCCCccccccCCCcCEEeeccEEEEE
Q psy6097 96 VPGDIIVIPKHGCT--LACDATLL--------------QG-N----CIVNESMLTVHGALFIMWEDVNHTLYCGTVILQA 154 (167)
Q Consensus 96 v~GDii~v~~~g~~--iP~D~~vl--------------~g-~----~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g 154 (167)
..||=+.+.+.++. -|+||.+. +| + .=+|+..|.||-.-... +.|+.|-+|..+++=
T Consensus 28 ~lG~GvaI~p~~~~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiLiHiGidTv~L~G~gF~~~v--~~G~~V~~G~~L~~~ 105 (132)
T PF00358_consen 28 MLGDGVAIIPSDGKVYAPVDGTVTMIFPTKHAIGIRSDNGVEILIHIGIDTVKLNGEGFETLV--KEGDKVKAGQPLIEF 105 (132)
T ss_dssp SSSEEEEEEESSSEEEESSSEEEEEE-TTSSEEEEEETTSEEEEEE-SBSGGGGTTTTEEESS---TTSEE-TTEEEEEE
T ss_pred CCcCEEEEEcCCCeEEEEeeEEEEEEcCCCCEEEEEeCCCCEEEEEEccchhhcCCcceEEEE--eCCCEEECCCEEEEE
Confidence 35666666333444 38999996 22 1 23577888888765544 789999999988753
No 73
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=40.82 E-value=80 Score=21.96 Aligned_cols=7 Identities=29% Similarity=0.467 Sum_probs=3.4
Q ss_pred eeccEEE
Q psy6097 146 YCGTVIL 152 (167)
Q Consensus 146 ~aGt~v~ 152 (167)
..|++.+
T Consensus 95 ~~G~K~l 101 (125)
T PF10162_consen 95 DMGSKVL 101 (125)
T ss_pred CCCCEEE
Confidence 3455544
No 74
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=40.72 E-value=35 Score=20.22 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=22.9
Q ss_pred HHhhhhcCCCeEEEEecCCeeEEeeCCCcCCCcEEEE
Q psy6097 67 SLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVI 103 (167)
Q Consensus 67 ~l~~~~~~~~~~~V~r~~g~~~~i~~~~lv~GDii~v 103 (167)
+++++.... .++| | |+...-+...+.+||.|.+
T Consensus 26 ~~k~li~~G-~V~V--N-g~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 26 QAKWFLQEN-EVLV--N-GELENRRGKKLYPGDVIEI 58 (59)
T ss_pred HHHHHHHcC-CEEE--C-CEEccCCCCCCCCCCEEEe
Confidence 455555443 4544 6 7766667889999999987
No 75
>PRK06033 hypothetical protein; Validated
Probab=40.31 E-value=31 Score=22.45 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=8.4
Q ss_pred CCCcCCCcEEEE
Q psy6097 92 TTHLVPGDIIVI 103 (167)
Q Consensus 92 ~~~lv~GDii~v 103 (167)
.-++.+||+|.+
T Consensus 25 lL~L~~GDVI~L 36 (83)
T PRK06033 25 VLRMGRGAVIPL 36 (83)
T ss_pred HhCCCCCCEEEe
Confidence 445677777777
No 76
>PF14168 YjzC: YjzC-like protein
Probab=39.14 E-value=45 Score=20.22 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=17.5
Q ss_pred CeeEEeeCCC--cCCCcEEEEccCCcEEe
Q psy6097 85 GLYEEVPTTH--LVPGDIIVIPKHGCTLA 111 (167)
Q Consensus 85 g~~~~i~~~~--lv~GDii~v~~~g~~iP 111 (167)
|.+++|-.+- +.-+-.|.| ..||++|
T Consensus 17 G~Y~EvG~~G~~v~~p~~v~l-~~Gd~fP 44 (57)
T PF14168_consen 17 GTYVEVGERGGHVNNPKEVKL-KKGDRFP 44 (57)
T ss_pred ceEEEECCCCCccCCCcEEEe-cCCCcCc
Confidence 6666666433 334448888 7899988
No 77
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=38.34 E-value=23 Score=21.06 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=10.7
Q ss_pred CCCcEEEEccCCcE
Q psy6097 96 VPGDIIVIPKHGCT 109 (167)
Q Consensus 96 v~GDii~v~~~g~~ 109 (167)
.+||+|.+ +.|..
T Consensus 2 ~~GDvV~L-KSGGp 14 (53)
T PF09926_consen 2 KIGDVVQL-KSGGP 14 (53)
T ss_pred CCCCEEEE-ccCCC
Confidence 58999999 88754
No 78
>PF03453 MoeA_N: MoeA N-terminal region (domain I and II); InterPro: IPR005110 This entry represents the N-terminal and linker domains of the MoeA protein. Proteins in this family contain two structural domains, one of which contains the conserved DGXA motif. These two domains are found in proteins involved in biosynthesis of molybdopterin cofactor however the exact molecular function of this region is uncertain. The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) [].; GO: 0032324 molybdopterin cofactor biosynthetic process; PDB: 1UZ5_A 1T3E_B 2FTS_A 2FU3_A 1XI8_A 1WU2_A 2NRS_A 2NRP_B 2NRO_A 2NQV_A ....
Probab=38.06 E-value=17 Score=26.64 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=20.6
Q ss_pred CCCcCCCcEEEEccCCcEEe--eeEEEEeeEEEEeCC
Q psy6097 92 TTHLVPGDIIVIPKHGCTLA--CDATLLQGNCIVNES 126 (167)
Q Consensus 92 ~~~lv~GDii~v~~~g~~iP--~D~~vl~g~~~Vdes 126 (167)
...+.+|.-+.| .-|..+| ||++|-.-++.+.+.
T Consensus 81 ~~~l~~g~av~I-~TGa~vP~g~DaVV~~E~~~~~~~ 116 (162)
T PF03453_consen 81 PIPLQPGEAVRI-MTGAPVPEGADAVVPIEDTEVEGD 116 (162)
T ss_dssp SSB--TTEEEEE--TTSB--TT-SEEEEGGGCEEETT
T ss_pred cccCCCCeEEEE-eCCCccCCCCCEEEEehheeeccc
Confidence 467889999999 8999999 899886444444443
No 79
>PRK08433 flagellar motor switch protein; Validated
Probab=37.92 E-value=34 Score=23.70 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=9.0
Q ss_pred CCCcCCCcEEEE
Q psy6097 92 TTHLVPGDIIVI 103 (167)
Q Consensus 92 ~~~lv~GDii~v 103 (167)
.-++.+||+|.+
T Consensus 50 lL~Lq~GDVI~L 61 (111)
T PRK08433 50 ILKFEKGSVIDL 61 (111)
T ss_pred HhCCCCCCEEEe
Confidence 456778888888
No 80
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=37.90 E-value=32 Score=21.79 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=9.4
Q ss_pred CCCcCCCcEEEE
Q psy6097 92 TTHLVPGDIIVI 103 (167)
Q Consensus 92 ~~~lv~GDii~v 103 (167)
--++.+||++.+
T Consensus 26 ll~L~~Gdvi~L 37 (77)
T TIGR02480 26 LLKLGEGSVIEL 37 (77)
T ss_pred HhcCCCCCEEEc
Confidence 556788888888
No 81
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=37.31 E-value=3.9e+02 Score=25.77 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=24.8
Q ss_pred CCCcEEEEccCCcEEeeeEEEEe---eE-EEEeCCcccC
Q psy6097 96 VPGDIIVIPKHGCTLACDATLLQ---GN-CIVNESMLTV 130 (167)
Q Consensus 96 v~GDii~v~~~g~~iP~D~~vl~---g~-~~Vdes~ltG 130 (167)
+-|....+ ...|.+|.|.++++ |+ +-+|--.+.|
T Consensus 235 Rdg~~~~I-~s~eLvpGDiv~l~~~~g~~iPaD~~ll~g 272 (1054)
T TIGR01657 235 RNGKWVTI-ASDELVPGDIVSIPRPEEKTMPCDSVLLSG 272 (1054)
T ss_pred ECCEEEEE-EcccCCCCCEEEEecCCCCEecceEEEEeC
Confidence 45888999 79999999999997 42 4445445555
No 82
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=36.72 E-value=42 Score=21.02 Aligned_cols=26 Identities=12% Similarity=0.385 Sum_probs=18.8
Q ss_pred EEEeeEEEEeCCcccCCCccccccCCCcCEEe
Q psy6097 115 TLLQGNCIVNESMLTVHGALFIMWEDVNHTLY 146 (167)
Q Consensus 115 ~vl~g~~~Vdes~ltGEs~p~~k~~~~~~~v~ 146 (167)
.||+|++.+... +|+...+ .+|+.++
T Consensus 30 ~vleG~v~it~~--~G~~~~~----~aGD~~~ 55 (74)
T PF05899_consen 30 YVLEGEVTITDE--DGETVTF----KAGDAFF 55 (74)
T ss_dssp EEEEEEEEEEET--TTEEEEE----ETTEEEE
T ss_pred EEEEeEEEEEEC--CCCEEEE----cCCcEEE
Confidence 688998777666 8887766 5666553
No 83
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=36.24 E-value=93 Score=26.18 Aligned_cols=47 Identities=19% Similarity=0.334 Sum_probs=29.6
Q ss_pred eEEEEecCCeeEEeeC----------CC--cCCCcEEEEccC--CcEEeeeEEEE-eeEEEEeC
Q psy6097 77 KVTVKRSKGLYEEVPT----------TH--LVPGDIIVIPKH--GCTLACDATLL-QGNCIVNE 125 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~~----------~~--lv~GDii~v~~~--g~~iP~D~~vl-~g~~~Vde 125 (167)
.+++.|+ |+...++- .+ |++||+|.| +. ...+-+-|.+- .|....+.
T Consensus 212 ~V~l~R~-g~~~~i~l~~ll~~g~~~~ni~L~~GDvI~V-p~~~~~~v~V~GeV~~Pg~~~~~~ 273 (379)
T PRK15078 212 NVVLTHN-GKEERISLQALMQNGDLSQNRLLYPGDILYV-PRNDDLKVFVMGEVKKQSTLKMDR 273 (379)
T ss_pred eEEEEEC-CeEEEEEHHHHHhcCCcccCceeCCCCEEEE-CCCCCcEEEEeeecccceEEecCC
Confidence 6888898 77666652 12 789999999 44 33466666664 23444443
No 84
>cd00081 Hint Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here.
Probab=35.77 E-value=47 Score=22.70 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=20.1
Q ss_pred EEEEecCCeeEEeeCCCcCCCcEEEEcc
Q psy6097 78 VTVKRSKGLYEEVPTTHLVPGDIIVIPK 105 (167)
Q Consensus 78 ~~V~r~~g~~~~i~~~~lv~GDii~v~~ 105 (167)
..+..+ +.+.++.+++|.+||.+.+ .
T Consensus 74 ~~~~~~-~~~~~~~a~~l~~gd~l~~-~ 99 (136)
T cd00081 74 LFVLED-GELKWVFASDLKPGDYVLV-P 99 (136)
T ss_pred EEEEeC-CeEEEEEHHHCCCCCEEEE-c
Confidence 334343 5678899999999999999 5
No 85
>PRK06788 flagellar motor switch protein; Validated
Probab=35.31 E-value=37 Score=23.79 Aligned_cols=11 Identities=27% Similarity=0.613 Sum_probs=6.3
Q ss_pred CCcCCCcEEEE
Q psy6097 93 THLVPGDIIVI 103 (167)
Q Consensus 93 ~~lv~GDii~v 103 (167)
-+|.+||+|.+
T Consensus 53 L~L~vGDVI~L 63 (119)
T PRK06788 53 KQLKVGDVLEV 63 (119)
T ss_pred hCCCCCCEEEe
Confidence 34556666666
No 86
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=33.78 E-value=24 Score=24.93 Aligned_cols=17 Identities=35% Similarity=0.716 Sum_probs=14.0
Q ss_pred EEeeCCCcCCCcEEEEcc
Q psy6097 88 EEVPTTHLVPGDIIVIPK 105 (167)
Q Consensus 88 ~~i~~~~lv~GDii~v~~ 105 (167)
..++.++++|||+|.. .
T Consensus 70 ~~v~~~~~qpGDlvff-~ 86 (134)
T TIGR02219 70 VPVPCDAAQPGDVLVF-R 86 (134)
T ss_pred cccchhcCCCCCEEEE-e
Confidence 3567779999999998 5
No 87
>PRK00556 minC septum formation inhibitor; Reviewed
Probab=33.74 E-value=72 Score=24.35 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=19.9
Q ss_pred EEecCCeeEEeeCCCcCCCcEEEEc--cCCcEEeeeEEEE
Q psy6097 80 VKRSKGLYEEVPTTHLVPGDIIVIP--KHGCTLACDATLL 117 (167)
Q Consensus 80 V~r~~g~~~~i~~~~lv~GDii~v~--~~g~~iP~D~~vl 117 (167)
.+|+ |+....+ ||++.+. .+|..+-|+|-+.
T Consensus 99 ~iRS-GQ~I~~~------gdvvilGdVn~GA~I~A~GnI~ 131 (194)
T PRK00556 99 VIRS-GEEIYSA------NDLIFLGRINNGAKIISEGNVS 131 (194)
T ss_pred ceeC-CCEEEeC------CCEEEEecCCCCCEEEeCCCEE
Confidence 4566 7766654 4555441 4788888888764
No 88
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=32.78 E-value=1.1e+02 Score=19.55 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=20.6
Q ss_pred eEEEEecCCeeEEee---CCCcCCCcEEEEccCCc
Q psy6097 77 KVTVKRSKGLYEEVP---TTHLVPGDIIVIPKHGC 108 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~---~~~lv~GDii~v~~~g~ 108 (167)
.++|-.. |..++++ ..+..|||-|.+ +.|-
T Consensus 16 ~A~v~~~-G~~~~v~l~lv~~~~vGD~VLV-H~G~ 48 (76)
T TIGR00074 16 IALVEFC-GIKRDVSLDLVGEVKVGDYVLV-HVGF 48 (76)
T ss_pred EEEEEcC-CeEEEEEEEeeCCCCCCCEEEE-ecCh
Confidence 3444444 6655554 568899999999 8874
No 89
>COG1838 FumA Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [Energy production and conversion]
Probab=32.64 E-value=22 Score=26.82 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=21.8
Q ss_pred CCCcCCCcEEEEccCCcEEeeeEEEEeeE----EEEeCCcccCCCccccc
Q psy6097 92 TTHLVPGDIIVIPKHGCTLACDATLLQGN----CIVNESMLTVHGALFIM 137 (167)
Q Consensus 92 ~~~lv~GDii~v~~~g~~iP~D~~vl~g~----~~Vdes~ltGEs~p~~k 137 (167)
.++|.+||++++ .|.++.++ ..+-|..=.||..|++-
T Consensus 13 i~~LkvGd~v~l---------sG~I~t~RD~AH~ri~e~~~~ge~lP~dl 53 (184)
T COG1838 13 IAKLKVGDVVYL---------SGKIVTGRDAAHKRLLEMLDRGEELPVDL 53 (184)
T ss_pred HHhccCCCEEEE---------eeEEEEehhHHHHHHHHHHhcCCCCCccC
Confidence 456778888888 23444442 22334444688888765
No 90
>PTZ00370 STEVOR; Provisional
Probab=32.03 E-value=1.2e+02 Score=24.74 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6097 34 CVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQK 66 (167)
Q Consensus 34 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 66 (167)
....+..+.+.+.+++++.++..++-+|..+|+
T Consensus 250 AsaaF~Pygiaalvllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 250 ASSAFYPYGIAALVLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred HHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445666767777777777777777766655
No 91
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=31.63 E-value=37 Score=27.07 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=24.0
Q ss_pred eEEEEecC-CeeEEeeCCCcCCCcEEEEccC-CcE
Q psy6097 77 KVTVKRSK-GLYEEVPTTHLVPGDIIVIPKH-GCT 109 (167)
Q Consensus 77 ~~~V~r~~-g~~~~i~~~~lv~GDii~v~~~-g~~ 109 (167)
.+.|+|.+ |....-.-++++|||.|.+..+ |+.
T Consensus 69 ~isVk~~~~G~~S~~Lh~~lk~Gd~l~v~~P~G~F 103 (266)
T COG1018 69 RISVKREDGGGGSNWLHDHLKVGDTLEVSAPAGDF 103 (266)
T ss_pred EEEEEEeCCCcccHHHHhcCCCCCEEEEecCCCCc
Confidence 66777775 5666666789999999999433 444
No 92
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=31.54 E-value=1.3e+02 Score=23.74 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=41.9
Q ss_pred EEEEccCCcEEee--------eEEEEeeEEEEeCCcccCCCccccccCCCcCEEeeccEEEEEE-eeCCCccceee
Q psy6097 100 IIVIPKHGCTLAC--------DATLLQGNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQAR-YHGDEYLPWEL 166 (167)
Q Consensus 100 ii~v~~~g~~iP~--------D~~vl~g~~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g~-~~~~~~~~~~~ 166 (167)
++.+ ++|..+|- -..+|+|...+ .+.||..++ ++|+.+|-..-+-+.- +.|+++...+|
T Consensus 183 ~~~~-~PG~~~~~~~~H~~eh~~yiL~G~G~~---~~~g~~~~V----~~GD~i~i~~~~~h~~~~~G~~~~~~l~ 250 (260)
T TIGR03214 183 ILSF-EPGASHPYIETHVMEHGLYVLEGKGVY---NLDNNWVPV----EAGDYIWMGAYCPQACYAGGRGEFRYLL 250 (260)
T ss_pred EEEE-CCCcccCCcccccceeEEEEEeceEEE---EECCEEEEe----cCCCEEEECCCCCEEEEecCCCcEEEEE
Confidence 4667 67888873 45678888765 357888888 8899999888776644 35666666654
No 93
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=31.44 E-value=2.6e+02 Score=22.06 Aligned_cols=43 Identities=9% Similarity=0.253 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhcCCCeEEEEec
Q psy6097 39 EAYYYYTGAIICMSVFGIVSSVIQTRQK----SLHDTVNTVDKVTVKRS 83 (167)
Q Consensus 39 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~V~r~ 83 (167)
.+.|....+++.+..+..+...+.++.. ++++..+++ +.++..
T Consensus 136 ~e~~~g~~~l~~l~~~~~i~~~f~~~~~~L~~~LNnrlE~e--V~~i~~ 182 (237)
T PF13748_consen 136 FEFWLGLACLLILALFLLILPRFARRNYRLYRRLNNRLEKE--VDIIER 182 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--ccHhhc
Confidence 3445444444444444444333333332 566555443 665554
No 94
>PRK04132 replication factor C small subunit; Provisional
Probab=30.82 E-value=51 Score=30.87 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=23.0
Q ss_pred eEEEEecCCeeEEeeCCCcCCCcEEEEccC
Q psy6097 77 KVTVKRSKGLYEEVPTTHLVPGDIIVIPKH 106 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~~~~lv~GDii~v~~~ 106 (167)
+..+.+.||...+++..+|.+||.|.+ +.
T Consensus 135 p~lv~~~~g~~~W~~a~eL~~GD~vav-pr 163 (846)
T PRK04132 135 PLLVNRKNGEIKWVKAEELKPGDKLAI-PR 163 (846)
T ss_pred eEEEeccCCceeeEEHhHcCCCCEEEe-cc
Confidence 444554458889999999999999999 44
No 95
>PRK11479 hypothetical protein; Provisional
Probab=30.60 E-value=26 Score=28.21 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=16.1
Q ss_pred EEeeCCCcCCCcEEEEccCC
Q psy6097 88 EEVPTTHLVPGDIIVIPKHG 107 (167)
Q Consensus 88 ~~i~~~~lv~GDii~v~~~g 107 (167)
..|+.++++|||++.. ..+
T Consensus 58 ~~Vs~~~LqpGDLVFf-st~ 76 (274)
T PRK11479 58 KEITAPDLKPGDLLFS-SSL 76 (274)
T ss_pred cccChhhCCCCCEEEE-ecC
Confidence 4788999999999998 554
No 96
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=30.53 E-value=1e+02 Score=23.91 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=23.0
Q ss_pred eEEEEecCCeeEEeeCCCcCCCcEEEEcc-CCcEEeeeEEEE
Q psy6097 77 KVTVKRSKGLYEEVPTTHLVPGDIIVIPK-HGCTLACDATLL 117 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~~~~lv~GDii~v~~-~g~~iP~D~~vl 117 (167)
..+|...|| ..+.-+||++||.|.... .|+.+..+.+..
T Consensus 16 ~a~V~~~~G--~~k~m~~L~iGD~Vla~d~~G~~~yS~V~~f 55 (217)
T PF01079_consen 16 DATVTLEDG--GRKRMSDLKIGDRVLAVDSDGKLVYSPVIMF 55 (217)
T ss_dssp T-EEEBTTS---EEEGGG--TT-EEEEE-TTS-EEEEEEEEE
T ss_pred CCEEEeCCC--CEeEHHHCCCCCEEEEecCCCcEEEEeEEEE
Confidence 456666556 467788999999888723 477777777775
No 97
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=30.41 E-value=1.3e+02 Score=24.52 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6097 37 FAEAYYYYTGAIICMSVFGIVSSVIQTRQK 66 (167)
Q Consensus 37 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 66 (167)
.+..+.+.+.+++++.++..++-+|..+|+
T Consensus 257 aF~Pcgiaalvllil~vvliiLYiWlyrrR 286 (295)
T TIGR01478 257 TFLPYGIAALVLIILTVVLIILYIWLYRRR 286 (295)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566667777777777777777766655
No 98
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=30.28 E-value=24 Score=23.23 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=10.5
Q ss_pred eEEeeCCCcCCCcEEEE
Q psy6097 87 YEEVPTTHLVPGDIIVI 103 (167)
Q Consensus 87 ~~~i~~~~lv~GDii~v 103 (167)
...+++++|.+|++|.+
T Consensus 58 Rt~l~w~~L~VG~~VMv 74 (85)
T PF12148_consen 58 RTILKWDELKVGQVVMV 74 (85)
T ss_dssp -SBE-GGG--TT-EEEE
T ss_pred eEeccHHhCCcccEEEE
Confidence 34678999999999998
No 99
>PRK06437 hypothetical protein; Provisional
Probab=30.10 E-value=85 Score=19.28 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=16.9
Q ss_pred eEEEEecCCeeEEeeCCCcCCCcEEEE
Q psy6097 77 KVTVKRSKGLYEEVPTTHLVPGDIIVI 103 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~~~~lv~GDii~v 103 (167)
.+.|.+| |+... ....|..||.|.+
T Consensus 36 ~vaV~vN-g~iv~-~~~~L~dgD~Vei 60 (67)
T PRK06437 36 EYVVIVN-GSPVL-EDHNVKKEDDVLI 60 (67)
T ss_pred cEEEEEC-CEECC-CceEcCCCCEEEE
Confidence 5667777 76554 4555777888777
No 100
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=29.75 E-value=59 Score=27.36 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=25.8
Q ss_pred CCcCCCcEEEEccCCcEEe--eeEEEEeeEEEEeC
Q psy6097 93 THLVPGDIIVIPKHGCTLA--CDATLLQGNCIVNE 125 (167)
Q Consensus 93 ~~lv~GDii~v~~~g~~iP--~D~~vl~g~~~Vde 125 (167)
..+.+|.-+.| .-|..+| ||++|-.-++.+++
T Consensus 79 ~~~~~g~av~I-~TGa~lP~gaDaVV~~E~~~~~~ 112 (394)
T cd00887 79 GPLGPGEAVRI-MTGAPLPEGADAVVMVEDTEEEG 112 (394)
T ss_pred cccCCCeEEEE-cCCCCCCCCCCEEEEEEeEEECC
Confidence 46788999999 8999999 99998765665544
No 101
>PLN03190 aminophospholipid translocase; Provisional
Probab=29.53 E-value=2e+02 Score=28.15 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=26.6
Q ss_pred CeeEEeeCCCcCCCcEEEEccCCc---EEeeeEEEEeeE
Q psy6097 85 GLYEEVPTTHLVPGDIIVIPKHGC---TLACDATLLQGN 120 (167)
Q Consensus 85 g~~~~i~~~~lv~GDii~v~~~g~---~iP~D~~vl~g~ 120 (167)
|..+.+...|.+|-|.+.+ ...+ ..-+|---|.|+
T Consensus 192 GDiv~v~~ge~iPaD~~ll-~Ss~~~G~~~Vdts~LdGE 229 (1178)
T PLN03190 192 GEIIKIQANDTLPCDMVLL-STSDPTGVAYVQTINLDGE 229 (1178)
T ss_pred CCEEEECCCCEeeeeEEEE-eccCCCceEEEEccccCCe
Confidence 7899999999999999999 5322 344666666664
No 102
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=29.22 E-value=74 Score=15.23 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=9.6
Q ss_pred cCCCcEEEEccCCcE
Q psy6097 95 LVPGDIIVIPKHGCT 109 (167)
Q Consensus 95 lv~GDii~v~~~g~~ 109 (167)
+.+||.+.+ ..|..
T Consensus 2 ~~~G~~V~I-~~G~~ 15 (28)
T smart00739 2 FEVGDTVRV-IAGPF 15 (28)
T ss_pred CCCCCEEEE-eECCC
Confidence 467888888 66644
No 103
>KOG3416|consensus
Probab=29.15 E-value=37 Score=24.15 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=12.5
Q ss_pred CCcCCCcEEEEccCCcE
Q psy6097 93 THLVPGDIIVIPKHGCT 109 (167)
Q Consensus 93 ~~lv~GDii~v~~~g~~ 109 (167)
.-+.|||||.+ ..|-.
T Consensus 60 ~~~~PGDIirL-t~Gy~ 75 (134)
T KOG3416|consen 60 CLIQPGDIIRL-TGGYA 75 (134)
T ss_pred cccCCccEEEe-cccch
Confidence 46899999999 66643
No 104
>PRK14898 DNA-directed RNA polymerase subunit A''; Provisional
Probab=28.49 E-value=61 Score=30.43 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=25.4
Q ss_pred eEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeee
Q psy6097 77 KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACD 113 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D 113 (167)
.+.+.+| |+..++...+|.+||.+.+ .. .+|.+
T Consensus 170 ~~~v~~~-g~~~~~~a~~l~~GD~i~~-~~--~~~~~ 202 (858)
T PRK14898 170 SFVTRKD-NEVIPVEGSELKIGDWLPV-VR--SLPAN 202 (858)
T ss_pred eEEEeeC-CeEEEeeHHhCCCCCEEee-ee--ecccc
Confidence 4445666 8999999999999999988 33 46643
No 105
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=28.33 E-value=2.9e+02 Score=21.61 Aligned_cols=18 Identities=17% Similarity=0.038 Sum_probs=12.2
Q ss_pred CCCCHHHHHHHHhhhHHH
Q psy6097 9 PIQNISSLFVLEALNPFY 26 (167)
Q Consensus 9 ~~~s~~~~~~~~~~~~~~ 26 (167)
..++++..+.+.+.+.+.
T Consensus 210 ~~~~~~~~~~~al~~~~~ 227 (262)
T PF14257_consen 210 ESPSFGSRFRDALKNGWN 227 (262)
T ss_pred CCCCcchHHHHHHHHHHH
Confidence 457888777777765553
No 106
>KOG2420|consensus
Probab=27.96 E-value=29 Score=28.89 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=22.1
Q ss_pred eeCCCcCCCcEEEEccCCcEEeeeEEEEe
Q psy6097 90 VPTTHLVPGDIIVIPKHGCTLACDATLLQ 118 (167)
Q Consensus 90 i~~~~lv~GDii~v~~~g~~iP~D~~vl~ 118 (167)
.-.++|+||....-+..-...|+||.||+
T Consensus 139 FF~RkLKpg~RpIdp~~piVSPaDGkIL~ 167 (382)
T KOG2420|consen 139 FFTRKLKPGTRPIDPASPLVSPADGKILH 167 (382)
T ss_pred HHhhccCCCCcccCCCCceecCCCCcEEE
Confidence 33677888888777455667899999984
No 107
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=27.88 E-value=77 Score=18.30 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy6097 24 PFYIFQVFTLCVWFAEAYYYY 44 (167)
Q Consensus 24 ~~~i~~~~~~~~~~~~~~~~~ 44 (167)
|....++.++-++.+.+|..+
T Consensus 2 PiLviL~g~vGLsa~vgyLDy 22 (46)
T PF11431_consen 2 PILVILFGAVGLSALVGYLDY 22 (46)
T ss_dssp HHHHHHHHHHHHHHHHSHTTT
T ss_pred ceehHHHHHhHHHHHHHHHHH
Confidence 555566666666666666544
No 108
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=27.60 E-value=44 Score=18.66 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=20.3
Q ss_pred HHhhhhcCCCeEEEEecCCeeEEeeCCCcCCCcEE
Q psy6097 67 SLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDII 101 (167)
Q Consensus 67 ~l~~~~~~~~~~~V~r~~g~~~~i~~~~lv~GDii 101 (167)
+.+++.... . |.-| |+...-+...+.+||+|
T Consensus 18 ~a~~~I~~g-~--V~VN-g~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 18 EARRLIKQG-R--VKVN-GKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp HHHHHHHTT-T--EEET-TEEESSTTSBESTTEEE
T ss_pred HHHHhcCCC-E--EEEC-CEEEcCCCCCCCCcCCC
Confidence 344455443 3 3446 87777788889999986
No 109
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=27.55 E-value=42 Score=25.46 Aligned_cols=20 Identities=25% Similarity=0.630 Sum_probs=15.9
Q ss_pred EEeeCCCcCCCcEEEEccCCc
Q psy6097 88 EEVPTTHLVPGDIIVIPKHGC 108 (167)
Q Consensus 88 ~~i~~~~lv~GDii~v~~~g~ 108 (167)
..++.+++.|||+|.. +.+.
T Consensus 122 ~~V~~~~lqpGDLVfF-~~~~ 141 (190)
T PRK10838 122 KSVSRSKLRTGDLVLF-RAGS 141 (190)
T ss_pred cCcccCCCCCCcEEEE-CCCC
Confidence 3567789999999999 6553
No 110
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=27.39 E-value=74 Score=27.07 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=24.5
Q ss_pred CCCcCCCcEEEEccCCcEEe--eeEEEEeeEEEE
Q psy6097 92 TTHLVPGDIIVIPKHGCTLA--CDATLLQGNCIV 123 (167)
Q Consensus 92 ~~~lv~GDii~v~~~g~~iP--~D~~vl~g~~~V 123 (167)
...+.+|.-+.| .-|..+| ||++|-.-++.+
T Consensus 87 ~~~~~~g~av~I-~TGa~vP~gaDaVv~~E~~~~ 119 (411)
T PRK10680 87 HGEWPAGTCIRI-MTGAPVPEGCEAVVMQEQTEQ 119 (411)
T ss_pred CcccCCCeEEEE-ecCCcCCCCCCEEEEEEEEEE
Confidence 346788899999 8999999 899887555554
No 111
>PF11133 Phage_head_fibr: Head fiber protein; InterPro: IPR022741 This entry is represented by Bacteriophage B103, Gp8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Gp8 (Gene locus 8.5 in contig X99260_GR) is a structural head protein in phage and is dispensable. ; PDB: 3QC7_A.
Probab=26.78 E-value=21 Score=28.56 Aligned_cols=70 Identities=20% Similarity=0.241 Sum_probs=0.0
Q ss_pred EEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeEEEEeCCcccCCCccccccCCCcCEEeeccEEEEE
Q psy6097 80 VKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQA 154 (167)
Q Consensus 80 V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g 154 (167)
.+|+.|-+ .+..++|..||.+.| .=..+++|-+.-.++..+.|..-+|-..-+.+ .+++..+.|-.+-.|
T Consensus 33 ~~r~~gp~-~l~~~dL~~G~~~pv--~~~Pi~ad~v~~~a~I~v~d~~a~g~~~siKv--ak~s~~~~Gm~lg~g 102 (277)
T PF11133_consen 33 GIRRRGPF-YLDTTDLTVGDYLPV--SFTPIAADLVKATANISVGDALAVGSNGSIKV--AKNSLAYVGMALGTG 102 (277)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred ehhccCCc-eeeeccccccccccc--cccchhhhHhhhccceeeeeeeeecCCceEEE--ccCcceEeeEEeccc
Confidence 34443443 788999999999996 24468899777666777777777775455544 667788888877766
No 112
>PRK08983 fliN flagellar motor switch protein; Validated
Probab=26.71 E-value=65 Score=22.82 Aligned_cols=12 Identities=17% Similarity=0.401 Sum_probs=8.0
Q ss_pred CCCcCCCcEEEE
Q psy6097 92 TTHLVPGDIIVI 103 (167)
Q Consensus 92 ~~~lv~GDii~v 103 (167)
.-+|.+||+|.+
T Consensus 69 lL~L~~GDVI~L 80 (127)
T PRK08983 69 LLQLNQGSVVEL 80 (127)
T ss_pred HhCCCCCCEEEe
Confidence 445667777776
No 113
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=26.29 E-value=50 Score=20.57 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=8.9
Q ss_pred CCCcCCCcEEEEccCC
Q psy6097 92 TTHLVPGDIIVIPKHG 107 (167)
Q Consensus 92 ~~~lv~GDii~v~~~g 107 (167)
-.++.+||++.+ ...
T Consensus 26 l~~L~~Gdvi~l-~~~ 40 (77)
T PF01052_consen 26 LLNLKVGDVIPL-DKP 40 (77)
T ss_dssp HHC--TT-EEEE-CCE
T ss_pred HhcCCCCCEEEe-CCC
Confidence 567889999999 543
No 114
>PRK07963 fliN flagellar motor switch protein FliN; Validated
Probab=26.24 E-value=66 Score=23.14 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=8.5
Q ss_pred CCCcCCCcEEEE
Q psy6097 92 TTHLVPGDIIVI 103 (167)
Q Consensus 92 ~~~lv~GDii~v 103 (167)
--+|.+||+|.+
T Consensus 78 LL~L~~GDVI~L 89 (137)
T PRK07963 78 LLRLTQGSVVAL 89 (137)
T ss_pred HhCCCCCCEEEe
Confidence 446677888877
No 115
>PF13403 Hint_2: Hint domain
Probab=26.17 E-value=68 Score=23.08 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=20.2
Q ss_pred EeeCCCcCCCcEEEEccCCcEEeeeE
Q psy6097 89 EVPTTHLVPGDIIVIPKHGCTLACDA 114 (167)
Q Consensus 89 ~i~~~~lv~GDii~v~~~g~~iP~D~ 114 (167)
.++..+|++||.|.= ..|..-|+--
T Consensus 15 ~~~Ve~L~~GD~V~T-~dgg~~~V~w 39 (147)
T PF13403_consen 15 PRPVEDLRPGDRVLT-RDGGFQPVRW 39 (147)
T ss_pred CeEeeccCCCCEEEe-cCCCEEEEEE
Confidence 677889999999999 8887777433
No 116
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=25.90 E-value=96 Score=21.82 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=11.8
Q ss_pred CcCCCcEEEEccCCcEE
Q psy6097 94 HLVPGDIIVIPKHGCTL 110 (167)
Q Consensus 94 ~lv~GDii~v~~~g~~i 110 (167)
++.+||++.+ ++|...
T Consensus 87 ~l~~Gdv~~v-P~G~~h 102 (144)
T PF00190_consen 87 RLKAGDVFVV-PAGHPH 102 (144)
T ss_dssp EEETTEEEEE--TT-EE
T ss_pred eeecccceee-ccceeE
Confidence 4999999999 788653
No 117
>PRK08916 flagellar motor switch protein; Reviewed
Probab=25.18 E-value=66 Score=22.44 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=8.2
Q ss_pred CCCcCCCcEEEE
Q psy6097 92 TTHLVPGDIIVI 103 (167)
Q Consensus 92 ~~~lv~GDii~v 103 (167)
--+|.+||+|.+
T Consensus 63 LL~L~~GDVI~L 74 (116)
T PRK08916 63 LLKLGPGSVLEL 74 (116)
T ss_pred HhcCCCCCEEEc
Confidence 456667777777
No 118
>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional
Probab=25.02 E-value=90 Score=22.31 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=21.7
Q ss_pred eEEEEecCCeeEEeeCCCcCCCcEEEEccCCcE
Q psy6097 77 KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCT 109 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~ 109 (167)
.|+| | |+. .-++.++.+||.|.+ ..|..
T Consensus 35 ~V~v--n-G~~-~Kps~~V~~gd~l~v-~~~~~ 62 (133)
T PRK10348 35 KVHY--N-GQR-SKPSKIVELNATLTL-RQGND 62 (133)
T ss_pred CEEE--C-CEE-CCCCCccCCCCEEEE-EECCE
Confidence 4543 5 877 788999999999999 66654
No 119
>KOG0024|consensus
Probab=25.01 E-value=43 Score=27.84 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=13.5
Q ss_pred CCCcCCCcEEEEccCC
Q psy6097 92 TTHLVPGDIIVIPKHG 107 (167)
Q Consensus 92 ~~~lv~GDii~v~~~g 107 (167)
.+.|+|||.|.+ ++|
T Consensus 80 Vk~LkVGDrVai-Epg 94 (354)
T KOG0024|consen 80 VKHLKVGDRVAI-EPG 94 (354)
T ss_pred ccccccCCeEEe-cCC
Confidence 779999999999 777
No 120
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=24.86 E-value=59 Score=26.21 Aligned_cols=11 Identities=0% Similarity=-0.079 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy6097 51 MSVFGIVSSVI 61 (167)
Q Consensus 51 ~~~~~~~~~~~ 61 (167)
.++++.++-+|
T Consensus 181 AFaINFILLFY 191 (274)
T PF06459_consen 181 AFAINFILLFY 191 (274)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 121
>PRK05698 fliN flagellar motor switch protein; Validated
Probab=24.00 E-value=76 Score=23.33 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=6.5
Q ss_pred CCcCCCcEEEE
Q psy6097 93 THLVPGDIIVI 103 (167)
Q Consensus 93 ~~lv~GDii~v 103 (167)
-+|.+||+|.+
T Consensus 98 L~L~~GDVI~L 108 (155)
T PRK05698 98 LQLNQGSVIEL 108 (155)
T ss_pred hCCCCCCEEEe
Confidence 34556666666
No 122
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=23.90 E-value=1.7e+02 Score=17.45 Aligned_cols=20 Identities=0% Similarity=0.007 Sum_probs=12.0
Q ss_pred CCCCCHHHHHHHHhhhHHHH
Q psy6097 8 VPIQNISSLFVLEALNPFYI 27 (167)
Q Consensus 8 ~~~~s~~~~~~~~~~~~~~i 27 (167)
.+..|+|-.+.+-..+...+
T Consensus 17 ~R~NsF~fViik~vismimy 36 (54)
T PF04835_consen 17 LRPNSFWFVIIKSVISMIMY 36 (54)
T ss_pred cCCchHHHHHHHHHHHHHHH
Confidence 34567777777776654333
No 123
>COG3768 Predicted membrane protein [Function unknown]
Probab=23.83 E-value=4.3e+02 Score=21.99 Aligned_cols=14 Identities=7% Similarity=0.050 Sum_probs=8.4
Q ss_pred CCCCHHHHHHHHhh
Q psy6097 9 PIQNISSLFVLEAL 22 (167)
Q Consensus 9 ~~~s~~~~~~~~~~ 22 (167)
++.|||++++...-
T Consensus 59 pr~s~~k~~~~a~~ 72 (350)
T COG3768 59 PRSSFWKIMLGAGG 72 (350)
T ss_pred ccchHHHHHHHHHH
Confidence 34677776665543
No 124
>PRK03187 tgl transglutaminase; Provisional
Probab=23.63 E-value=2.5e+02 Score=22.66 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=20.4
Q ss_pred CeeEEeeCCCcCCCcEEEEccCCcEEe
Q psy6097 85 GLYEEVPTTHLVPGDIIVIPKHGCTLA 111 (167)
Q Consensus 85 g~~~~i~~~~lv~GDii~v~~~g~~iP 111 (167)
-.......++..|||.++. ++.|.=|
T Consensus 156 L~i~t~~g~~~~PGD~vYF-kNPd~~p 181 (272)
T PRK03187 156 LKLITKTGGDFLPGDCVYF-KNPDFNP 181 (272)
T ss_pred cceEEecCCCCCCCcEEEe-cCCCCCC
Confidence 4455556789999999999 8888766
No 125
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=23.45 E-value=47 Score=21.32 Aligned_cols=10 Identities=30% Similarity=1.172 Sum_probs=8.3
Q ss_pred CcCCCcEEEE
Q psy6097 94 HLVPGDIIVI 103 (167)
Q Consensus 94 ~lv~GDii~v 103 (167)
-|.|||+|.+
T Consensus 46 ~I~~GD~V~V 55 (75)
T COG0361 46 RILPGDVVLV 55 (75)
T ss_pred EeCCCCEEEE
Confidence 3678999999
No 126
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=23.41 E-value=5.7e+02 Score=23.29 Aligned_cols=24 Identities=13% Similarity=0.154 Sum_probs=12.9
Q ss_pred HhhhhcCCC-eEEEEecCCeeEEee
Q psy6097 68 LHDTVNTVD-KVTVKRSKGLYEEVP 91 (167)
Q Consensus 68 l~~~~~~~~-~~~V~r~~g~~~~i~ 91 (167)
++..+.+.| .+-++.+++..++..
T Consensus 77 ~~~al~nmPiGii~~~e~~~veW~N 101 (655)
T COG3887 77 LEEALTNMPIGIILFNETNKVEWVN 101 (655)
T ss_pred HHHHHHhCCceEEEEcCCCceEEec
Confidence 444444555 565666556555544
No 127
>PRK06666 fliM flagellar motor switch protein FliM; Validated
Probab=23.20 E-value=2e+02 Score=23.45 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=20.6
Q ss_pred HHhhhhcCCC-eEEEEecCCeeEEeeCCCcCCCcEEEEccCC
Q psy6097 67 SLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHG 107 (167)
Q Consensus 67 ~l~~~~~~~~-~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g 107 (167)
++++.+..-+ .+++.-..-+...-..-+|.+||+|.+ ...
T Consensus 250 ~l~~~l~~~~v~l~~~L~~~~i~l~dll~L~vGDVI~L-~~~ 290 (337)
T PRK06666 250 ELEQQVQQAEVELVAELGEIKLTLSEILNLKVGDVIPL-EKP 290 (337)
T ss_pred HHHHHHhcCeeEEEEEEecceeeHHHHhCCCCCCEEEe-CCC
Confidence 4444444433 444444311222222667889999998 544
No 128
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=22.87 E-value=95 Score=23.77 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=25.1
Q ss_pred HHhhhhcCCCeEEEEecCCeeEEeeCCCcCCCcEEEEccC
Q psy6097 67 SLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKH 106 (167)
Q Consensus 67 ~l~~~~~~~~~~~V~r~~g~~~~i~~~~lv~GDii~v~~~ 106 (167)
..++++... .++ -| |+....++..+.+||.|.+ ..
T Consensus 106 ~ArqlI~~G-~V~--VN-Gk~v~~ps~~Vk~GD~I~V-~~ 140 (201)
T CHL00113 106 AARQLVNHG-HIL--VN-GRIVDIPSYRCKPKDIITV-KD 140 (201)
T ss_pred HHHHHHHCC-cEE--EC-CEEecCccccCCCCCEEEE-cc
Confidence 344444443 444 46 8888899999999999999 53
No 129
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=22.84 E-value=49 Score=21.83 Aligned_cols=21 Identities=43% Similarity=0.823 Sum_probs=15.7
Q ss_pred CeeEEeeCCCcCCCcEEEEccC
Q psy6097 85 GLYEEVPTTHLVPGDIIVIPKH 106 (167)
Q Consensus 85 g~~~~i~~~~lv~GDii~v~~~ 106 (167)
+....++.++++|||++.. ..
T Consensus 42 ~~~~~~~~~~~~pGDlif~-~~ 62 (105)
T PF00877_consen 42 GFQKRVPISELQPGDLIFF-KG 62 (105)
T ss_dssp SEEEHEEGGG-TTTEEEEE-EG
T ss_pred ccccccchhcCCcccEEEE-eC
Confidence 3334588999999999999 55
No 130
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=22.44 E-value=83 Score=24.42 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=16.1
Q ss_pred CcCCCcEEEEccCCcEEeeeEEEE
Q psy6097 94 HLVPGDIIVIPKHGCTLACDATLL 117 (167)
Q Consensus 94 ~lv~GDii~v~~~g~~iP~D~~vl 117 (167)
.|++||+|.| +....+-+.|-+-
T Consensus 150 ~L~~GD~I~V-~~~~~v~v~G~V~ 172 (239)
T TIGR03028 150 LVAGGDIIYV-DRAPVFYIYGEVQ 172 (239)
T ss_pred EEcCCCEEEE-cCCccEEEEeEcc
Confidence 4789999999 5665555555553
No 131
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.
Probab=21.81 E-value=93 Score=23.67 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=36.3
Q ss_pred HHhhhhcCCCeEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEee-------e---EEEEeeEEEEeCCcccCCC
Q psy6097 67 SLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLAC-------D---ATLLQGNCIVNESMLTVHG 132 (167)
Q Consensus 67 ~l~~~~~~~~~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~-------D---~~vl~g~~~Vdes~ltGEs 132 (167)
..+++.... .+ .-| |+.+..++..+.+||+|.+ . |..... + ..-+...+.+|...+||--
T Consensus 107 ~ArqlI~~G-~V--~VN-gk~v~~ps~~V~~GD~I~V-~-~~~~~~~~i~~~~~~~~~~~~p~~l~~d~~~~~g~~ 176 (200)
T TIGR01017 107 AARQLVSHG-HI--LVN-GKKVDIPSYQVRPGDIISI-K-EKSKKIPLVKENLETNGQRNIPSWLEVDKKTLEGKV 176 (200)
T ss_pred HHHHHHHCC-CE--EEC-CEEeCCCCCCCCCCCEEEE-e-eCcccHHHHHHHHhhhcccCCCCeEEEecccCEEEE
Confidence 344444443 34 346 8888889999999999999 5 322210 0 0112234778888888763
No 132
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=21.53 E-value=56 Score=22.53 Aligned_cols=18 Identities=33% Similarity=0.613 Sum_probs=14.4
Q ss_pred eCCCcCCCcEEEEccCCcE
Q psy6097 91 PTTHLVPGDIIVIPKHGCT 109 (167)
Q Consensus 91 ~~~~lv~GDii~v~~~g~~ 109 (167)
....+++||.+.+ ++|..
T Consensus 82 ~~~~l~~Gd~i~i-p~g~~ 99 (131)
T COG1917 82 EKKELKAGDVIII-PPGVV 99 (131)
T ss_pred CceEecCCCEEEE-CCCCe
Confidence 3678899999999 67754
No 133
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=21.46 E-value=1.1e+02 Score=23.26 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=37.5
Q ss_pred HHhhhhcCCCeEEEEecCCeeEEeeCCCcCCCcEEEEccCCcE----Ee--ee---EEEEeeEEEEeCCcccCCC
Q psy6097 67 SLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCT----LA--CD---ATLLQGNCIVNESMLTVHG 132 (167)
Q Consensus 67 ~l~~~~~~~~~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~----iP--~D---~~vl~g~~~Vdes~ltGEs 132 (167)
..+++.... . |.-| |+....++..+.+||+|.+ ....+ +- .+ ..-+.+.+.+|-..+||--
T Consensus 110 ~arqlI~~G-~--V~VN-gk~v~~ps~~v~~GD~I~v-~~~sr~~~~l~~~l~~~~~~~~p~~l~~D~~~~tg~f 179 (203)
T PRK05327 110 QARQLVSHG-H--ILVN-GKKVNIPSYRVKPGDVIEV-REKSKKLPRIKEALELAERRGVPDWLEVDAEKLEGTF 179 (203)
T ss_pred HHHHHHHCC-c--EEEC-CEEECCCCcCCCCCCEEEE-CCcCcccHHHHHHHHhhcccCCCCeEEEecCcCEEEE
Confidence 444444443 3 4446 8888888999999999999 54211 00 01 0123456778888888864
No 134
>COG1836 Predicted membrane protein [Function unknown]
Probab=21.38 E-value=4e+02 Score=21.19 Aligned_cols=40 Identities=3% Similarity=0.056 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6097 27 IFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQK 66 (167)
Q Consensus 27 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 66 (167)
...+++.++++..++..+.....++..-+....+..++|.
T Consensus 40 ~A~~lG~~i~~~~g~~~fllll~Ff~~g~l~Tk~~~~~K~ 79 (247)
T COG1836 40 SAILLGALIIVFGGFKWFLLLLIFFALGSLATKYKYEEKE 79 (247)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666655555555555555555555544
No 135
>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th
Probab=20.99 E-value=2e+02 Score=17.17 Aligned_cols=11 Identities=27% Similarity=0.830 Sum_probs=9.4
Q ss_pred CcCCCcEEEEcc
Q psy6097 94 HLVPGDIIVIPK 105 (167)
Q Consensus 94 ~lv~GDii~v~~ 105 (167)
.+++||.|.+ +
T Consensus 40 ~~~vGD~V~~-~ 50 (64)
T cd04451 40 RILPGDRVKV-E 50 (64)
T ss_pred ccCCCCEEEE-E
Confidence 4899999999 5
No 136
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=20.92 E-value=58 Score=18.43 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=8.2
Q ss_pred CCCcEEEEccCCcEEeee
Q psy6097 96 VPGDIIVIPKHGCTLACD 113 (167)
Q Consensus 96 v~GDii~v~~~g~~iP~D 113 (167)
.||+-|.=.-.|+.||.|
T Consensus 3 ~pG~~V~CAVTg~~IpLd 20 (42)
T PF09866_consen 3 SPGSFVRCAVTGQPIPLD 20 (42)
T ss_pred cCCCEEEEEeeCCcccHH
Confidence 344444332345555554
No 137
>PF00717 Peptidase_S24: Peptidase S24-like peptidase classification. ; InterPro: IPR019759 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ].; PDB: 1KCA_H 3BDN_A 1F39_A 1JHH_A 1JHE_B 3JSP_A 1JHF_B 1JHC_A 3JSO_B 1B12_D ....
Probab=20.73 E-value=1e+02 Score=18.32 Aligned_cols=11 Identities=36% Similarity=0.670 Sum_probs=5.5
Q ss_pred CCcCCCcEEEE
Q psy6097 93 THLVPGDIIVI 103 (167)
Q Consensus 93 ~~lv~GDii~v 103 (167)
.++..||++.+
T Consensus 23 ~~~~~gdivv~ 33 (70)
T PF00717_consen 23 SEPKDGDIVVV 33 (70)
T ss_dssp S---TTSEEEE
T ss_pred CCCccCeEEEE
Confidence 46667777777
No 138
>KOG1307|consensus
Probab=20.45 E-value=2.7e+02 Score=24.55 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q psy6097 10 IQNISSLFVLEALNPFYIFQVFTLCVWFAEA--YYYYTGAIICMSVF 54 (167)
Q Consensus 10 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~i~~~~~~ 54 (167)
+-+||-+|.+-- ||.+-+++.+..|..+ .|+++.+++.+.+.
T Consensus 154 ~LtWWPLfRD~s---fY~lsl~~Li~Ff~D~~I~WwEaL~L~~~Yi~ 197 (588)
T KOG1307|consen 154 NLTWWPLFRDVS---FYTLSLIMLIYFFLDELIMWWEALALLLMYIS 197 (588)
T ss_pred ccccchhhhhhH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345665554432 3444444444444433 25555555544433
No 139
>COG2323 Predicted membrane protein [Function unknown]
Probab=20.19 E-value=4.3e+02 Score=20.63 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCeEEEEecCCee
Q psy6097 43 YYTGAIICMSVFGIVSSVIQTRQKSLHDTVNTVDKVTVKRSKGLY 87 (167)
Q Consensus 43 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~V~r~~g~~ 87 (167)
....+++...++....++++....+++++..-.| ..+++| |+.
T Consensus 61 ~~~~~~~~~~~l~~~l~~l~~ks~~~r~~l~G~P-~vlI~n-Gki 103 (224)
T COG2323 61 PTIIAILTLALLQILLSYLSLKSRKLRKLLEGKP-TVLIEN-GKI 103 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHhhcCCC-EEEEeC-CeE
Confidence 3334444444444555544433337777776653 447788 753
No 140
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=20.09 E-value=83 Score=24.19 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=29.0
Q ss_pred HHhhhhcCCCeEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEe
Q psy6097 67 SLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLA 111 (167)
Q Consensus 67 ~l~~~~~~~~~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP 111 (167)
+-++++... .|.-| |+.+.+++-.+.|||.+.| ..-+.-|
T Consensus 111 qARQlV~HG---HI~Vn-Gk~V~iPSy~V~~gdei~V-~~k~~s~ 150 (205)
T COG0522 111 QARQLVSHG---HILVN-GKRVNIPSYLVSPGDEISV-REKSKSP 150 (205)
T ss_pred HHHHHhhcc---eEEEC-CEEeccCcEEecCCCEEEe-eecccch
Confidence 334555553 34456 9999999999999999999 6544443
Done!