Query psy6097
Match_columns 167
No_of_seqs 109 out of 1155
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 17:31:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mhs_A Proton pump, plasma mem 100.0 1.6E-32 5.6E-37 246.6 9.8 154 1-158 100-258 (920)
2 2zxe_A Na, K-ATPase alpha subu 100.0 8.8E-32 3E-36 245.0 14.0 156 1-158 80-261 (1028)
3 3ixz_A Potassium-transporting 100.0 3.1E-31 1.1E-35 241.5 15.4 156 1-158 85-266 (1034)
4 3ar4_A Sarcoplasmic/endoplasmi 100.0 1.1E-30 3.9E-35 237.1 13.6 156 1-158 37-222 (995)
5 3b8c_A ATPase 2, plasma membra 100.0 3.4E-33 1.1E-37 250.6 -13.5 154 1-158 45-209 (885)
6 2hc8_A PACS, cation-transporti 99.9 3.6E-27 1.2E-31 164.0 5.6 78 77-158 13-90 (113)
7 2kij_A Copper-transporting ATP 99.9 5E-26 1.7E-30 160.6 6.0 87 67-157 8-101 (124)
8 3rfu_A Copper efflux ATPase; a 99.9 5.4E-25 1.9E-29 194.4 8.3 114 41-157 187-303 (736)
9 3j08_A COPA, copper-exporting 99.9 1.9E-25 6.4E-30 195.1 4.6 113 42-158 96-211 (645)
10 3j09_A COPA, copper-exporting 99.9 5.5E-25 1.9E-29 194.3 5.2 113 42-158 174-289 (723)
11 2jmz_A Hypothetical protein MJ 86.9 0.77 2.6E-05 33.3 4.4 35 77-113 104-138 (186)
12 3p42_A Predicted protein; beta 81.1 1 3.6E-05 34.2 3.0 32 77-108 167-205 (236)
13 2lcj_A PAB POLC intein; hydrol 77.1 2.4 8.2E-05 30.6 3.8 31 77-109 94-124 (185)
14 3sgi_A DNA ligase; HET: DNA AM 58.6 3 0.0001 36.1 1.1 27 90-116 374-401 (615)
15 1dgs_A DNA ligase; AMP complex 53.0 4.7 0.00016 35.3 1.3 22 90-111 362-383 (667)
16 4glx_A DNA ligase; inhibitor, 52.9 3.5 0.00012 35.4 0.6 26 91-116 365-391 (586)
17 2owo_A DNA ligase; protein-DNA 50.4 5.1 0.00017 35.1 1.1 22 90-111 364-385 (671)
18 1at0_A 17-hedgehog; developmen 48.2 11 0.00038 25.9 2.5 30 77-107 73-103 (145)
19 4e2q_A Ureidoglycine aminohydr 46.5 31 0.0011 26.4 5.0 70 89-166 176-257 (266)
20 1sq4_A GLXB, glyoxylate-induce 46.1 25 0.00087 26.8 4.5 59 100-166 195-262 (278)
21 2eqj_A Metal-response element- 46.1 17 0.00059 21.8 2.7 25 75-99 41-65 (66)
22 4e2u_A PHO RADA intein; HINT-f 45.6 35 0.0012 23.9 4.9 19 88-107 107-125 (168)
23 2k1g_A Lipoprotein SPR; soluti 44.1 8 0.00027 26.6 1.2 20 88-108 61-80 (135)
24 2z1c_A Hydrogenase expression/ 40.6 60 0.0021 19.8 4.7 31 77-109 16-49 (75)
25 2jyx_A Lipoprotein SPR; soluti 38.8 18 0.00061 24.6 2.3 20 88-108 61-80 (136)
26 1d1n_A Initiation factor 2; be 37.6 38 0.0013 22.0 3.6 14 92-106 79-92 (99)
27 1o9y_A HRCQ2; secretory protei 37.5 20 0.00068 22.3 2.2 14 92-106 33-46 (84)
28 2cw8_A Endonuclease PI-pkoii; 37.4 38 0.0013 28.5 4.6 27 77-104 97-123 (537)
29 2j58_A WZA, outer membrane lip 36.2 22 0.00075 28.4 2.8 31 77-108 192-234 (359)
30 2crv_A IF-2MT, translation ini 33.5 51 0.0018 22.2 3.8 16 92-108 86-102 (120)
31 3jxo_A TRKA-N domain protein; 33.1 26 0.00087 21.2 2.2 24 78-103 44-69 (86)
32 2in0_A Endonuclease PI-MTUI; h 32.4 21 0.00072 24.0 1.8 19 89-108 81-99 (139)
33 2lkt_A Retinoic acid receptor 29.2 27 0.00094 23.1 1.9 16 91-107 4-19 (125)
34 2if6_A Hypothetical protein YI 27.6 31 0.0011 24.5 2.1 15 92-107 2-16 (186)
35 3our_B EIIA, phosphotransferas 25.6 1.5E+02 0.0053 21.3 5.5 57 96-154 60-137 (183)
36 2cu3_A Unknown function protei 25.4 1E+02 0.0034 17.6 4.1 26 77-103 29-57 (64)
37 3gt2_A Putative uncharacterize 24.9 32 0.0011 23.5 1.7 18 88-106 83-100 (142)
38 1p9k_A ORF, hypothetical prote 24.2 45 0.0015 20.1 2.1 25 83-110 51-75 (79)
39 3uep_A YSCQ-C, type III secret 23.2 25 0.00085 22.5 0.8 12 92-103 37-48 (96)
40 1o6a_A Putative flagellar moto 23.2 21 0.00073 22.8 0.4 12 92-103 37-48 (96)
41 2gpr_A Glucose-permease IIA co 22.9 1.5E+02 0.005 20.6 4.8 55 98-154 35-110 (154)
42 1dm9_A Hypothetical 15.5 KD pr 22.8 75 0.0026 21.4 3.2 32 67-103 26-57 (133)
43 1f0z_A THis protein; ubiquitin 22.4 81 0.0028 18.1 3.0 26 77-103 31-59 (66)
44 2l32_A Small archaeal modifier 22.4 38 0.0013 20.5 1.5 24 77-103 36-59 (74)
45 2k6p_A Uncharacterized protein 21.8 68 0.0023 19.7 2.7 22 80-103 28-49 (92)
46 3pbi_A Invasion protein; pepti 21.8 34 0.0012 25.3 1.4 19 88-107 152-170 (214)
47 3ne0_A Resuscitation promoting 21.7 37 0.0013 25.2 1.6 19 88-107 152-170 (214)
48 3ie4_A GRAM-negative binding p 21.2 79 0.0027 20.7 2.9 20 84-103 56-76 (107)
49 3aqy_A Beta-1,3-glucan-binding 20.4 93 0.0032 20.2 3.2 20 84-103 57-77 (106)
50 2e6z_A Transcription elongatio 20.4 44 0.0015 19.2 1.4 24 93-117 6-29 (59)
51 2kl0_A Putative thiamin biosyn 20.3 71 0.0024 19.1 2.4 26 77-103 30-58 (73)
52 4gjz_A Lysine-specific demethy 20.0 43 0.0015 24.0 1.6 15 94-109 204-218 (235)
No 1
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=99.97 E-value=1.6e-32 Score=246.63 Aligned_cols=154 Identities=18% Similarity=0.238 Sum_probs=136.1
Q ss_pred CCCCccCCCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCC-Ce
Q psy6097 1 YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTV-DK 77 (167)
Q Consensus 1 yG~N~i~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~-~~ 77 (167)
||+|+++.+++++|..|+++|++|+.++++++++++++.+.|.++++++++++++..+++++++++ .++++.+.. ++
T Consensus 100 ~G~N~l~~~~~~~~~~~l~~f~~~~~~ll~~aai~s~~~g~~~~~~~i~~vv~i~~~i~~~qe~~a~~a~~~L~~l~~~~ 179 (920)
T 1mhs_A 100 YGLNQMKEEKENHFLKFLGFFVGPIQFVMEGAAVLAAGLEDWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALK 179 (920)
T ss_dssp TSSSSCCCCCCSSHHHHTHHHHHHHHHHHHHHHHHCTTCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSS
T ss_pred cCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCE
Confidence 899999988899999999999999988777777777666666667778888889999999999988 555554433 37
Q ss_pred EEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeE--EEEeCCcccCCCccccccCCCcCEEeeccEEEEEE
Q psy6097 78 VTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN--CIVNESMLTVHGALFIMWEDVNHTLYCGTVILQAR 155 (167)
Q Consensus 78 ~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~--~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g~ 155 (167)
++|+|+ |+++++++++|+|||+|.+ ++||++||||++++|+ +.||||+|||||.|+.| .+++.+|+||.+.+|+
T Consensus 180 a~V~Rd-G~~~~I~~~eLv~GDiV~l-~~Gd~VPaDg~ll~g~~~l~VDES~LTGES~PV~K--~~gd~v~sGT~v~~G~ 255 (920)
T 1mhs_A 180 AVVLRD-GTLKEIEAPEVVPGDILQV-EEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDK--HKGDQVFASSAVKRGE 255 (920)
T ss_dssp CEEECS-SSEEECCTTTSCTTSEEEE-CTTCBCSSEEEEEEESSCCEEBCTTTSSCCCCEEC--CSSCEECSCBCCSCCC
T ss_pred EEEEEC-CEEEEEEHHHcCCCCEEEe-CCCCccccceEEEecCceeeeeccccCCCCcceEe--cCCCeeecCceEecce
Confidence 999999 9999999999999999999 8999999999999996 69999999999999999 8999999999999998
Q ss_pred eeC
Q psy6097 156 YHG 158 (167)
Q Consensus 156 ~~~ 158 (167)
+.+
T Consensus 256 ~~~ 258 (920)
T 1mhs_A 256 AFV 258 (920)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 2
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=99.97 E-value=8.8e-32 Score=244.96 Aligned_cols=156 Identities=18% Similarity=0.234 Sum_probs=134.7
Q ss_pred CCCCccCCC-CCCHHHHHHHHhhhHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6097 1 YGKNEINVP-IQNISSLFVLEALNPFYIFQVFTLCVWFAE-------------AYYYYTGAIICMSVFGIVSSVIQTRQK 66 (167)
Q Consensus 1 yG~N~i~~~-~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~~~~~ 66 (167)
||+|+++.+ ++|+|++|+++|++++.++++++++++++. ++++++++++++++++.++++++++|+
T Consensus 80 ~G~N~l~~~~~~~~~~~~~~~~~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka 159 (1028)
T 2zxe_A 80 DGPNSLTPPPTTPEWIKFCRQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKS 159 (1028)
T ss_dssp HCCSCCCCCCCCCHHHHHHTTTTSTHHHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999876 589999999999999999998888877654 256678888899999999999999887
Q ss_pred --HHhhhhcCC-CeEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeE-EEEeCCcccCCCccccccC---
Q psy6097 67 --SLHDTVNTV-DKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN-CIVNESMLTVHGALFIMWE--- 139 (167)
Q Consensus 67 --~l~~~~~~~-~~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~-~~Vdes~ltGEs~p~~k~~--- 139 (167)
.++++.+.. ++++|+|+ |+++++++++|+|||+|.+ ++||++||||++++|+ |.||||+|||||.|+.|..
T Consensus 160 ~~~~~~L~~l~~~~a~V~Rd-g~~~~I~~~~Lv~GDiV~l-~~Gd~IPaD~~ll~g~~~~VdeS~LTGES~pv~K~~~~~ 237 (1028)
T 2zxe_A 160 SRIMDSFKNMVPQQALVIRD-GEKSTINAEFVVAGDLVEV-KGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFS 237 (1028)
T ss_dssp CCHHHHHHTTSCSEEEEEET-TEEEEEEGGGCCTTCEEEE-ETTCBCCSEEEEEEEEEEEEECHHHHSCCSCEECCSSCC
T ss_pred HHHHHHHHhhCCCeeEEEEC-CEEEEEEHHHCCcCCEEEE-CCCCEeeceEEEEeeCcEEEEcCccCCCCcceecccCCC
Confidence 555554443 38999999 9999999999999999999 8999999999999995 8999999999999999932
Q ss_pred -----CCcCEEeeccEEEEEEeeC
Q psy6097 140 -----DVNHTLYCGTVILQARYHG 158 (167)
Q Consensus 140 -----~~~~~v~aGt~v~~g~~~~ 158 (167)
+..|.+|+||.+.+|++.+
T Consensus 238 ~~~~~~~~n~v~~GT~v~~G~~~~ 261 (1028)
T 2zxe_A 238 SENPLETRNIAFFSTNCVEGTARG 261 (1028)
T ss_dssp CSSTTTCSSEECTTCEEEEEEEEE
T ss_pred CCCcccccceEEeCceEEcceEEE
Confidence 1235799999999998865
No 3
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=99.97 E-value=3.1e-31 Score=241.51 Aligned_cols=156 Identities=20% Similarity=0.198 Sum_probs=134.4
Q ss_pred CCCCccCCC-CCCHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6097 1 YGKNEINVP-IQNISSLFVLEALNPFYIFQVFTLCVWFAEA-------------YYYYTGAIICMSVFGIVSSVIQTRQK 66 (167)
Q Consensus 1 yG~N~i~~~-~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~~~~~~~~~~~ 66 (167)
||+|+++.+ ++++|++|+++|++++.++++++++++++.. +++.+++++++++++..+++++++|+
T Consensus 85 ~G~N~l~~~~~~~~~~~~~~q~~~~~~~il~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka 164 (1034)
T 3ixz_A 85 DGPNALRPPRGTPEYVKFARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKS 164 (1034)
T ss_pred hCCCCCCCCCCCCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhccCCCccccchhhhhhhheeeeHHHHHHHHHHHHH
Confidence 899999865 5799999999999999888887777766532 35678888889999999999999998
Q ss_pred --HHhhhhcCC-CeEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeE-EEEeCCcccCCCccccccC---
Q psy6097 67 --SLHDTVNTV-DKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN-CIVNESMLTVHGALFIMWE--- 139 (167)
Q Consensus 67 --~l~~~~~~~-~~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~-~~Vdes~ltGEs~p~~k~~--- 139 (167)
.++++.+.. ++++|+|| |+++++++++|+|||+|.+ ++||++||||++++|+ +.||||+|||||.|+.|..
T Consensus 165 ~~al~~L~~l~~~~a~ViRd-G~~~~I~~~eLv~GDiV~l-~~Gd~VPAD~~ll~~~~l~VdES~LTGES~pv~K~~~~~ 242 (1034)
T 3ixz_A 165 TNIIASFKNLVPQQATVIRD-GDKFQINADQLVVGDLVEM-KGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECT 242 (1034)
T ss_pred HHHHHHHhccCCCeeEEEEC-CEEEEEEHHHCCCCcEEEE-cCCceecCCeEEEEeCCceEEecccCCCCCCeeccCCCc
Confidence 555555443 38999999 9999999999999999999 8999999999999985 8999999999999999932
Q ss_pred -----CCcCEEeeccEEEEEEeeC
Q psy6097 140 -----DVNHTLYCGTVILQARYHG 158 (167)
Q Consensus 140 -----~~~~~v~aGt~v~~g~~~~ 158 (167)
+.+|.+|+||.+.+|++++
T Consensus 243 ~~~~~~~~n~~f~GT~v~~G~~~~ 266 (1034)
T 3ixz_A 243 HESPLETRNIAFFSTMCLEGTAQG 266 (1034)
T ss_pred cccccccccceecceeEEeecceE
Confidence 3457899999999999865
No 4
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=99.97 E-value=1.1e-30 Score=237.14 Aligned_cols=156 Identities=21% Similarity=0.296 Sum_probs=132.5
Q ss_pred CCCCccCCC-CCCHHHHHHHHhhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q psy6097 1 YGKNEINVP-IQNISSLFVLEALNPFYIFQVFTLCVWFAEA----------YYYYTGAIICMSVFGIVSSVIQTRQK--S 67 (167)
Q Consensus 1 yG~N~i~~~-~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~----------~~~~~~~i~~~~~~~~~~~~~~~~~~--~ 67 (167)
||+|+++.+ ++++|+++++||.++++++++++++++++.. .|.++++++++++++..++.++++|+ .
T Consensus 37 ~G~N~l~~~~~~~~~~~~~~qf~~~~~~~l~~~a~~s~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~qe~~a~~a 116 (995)
T 3ar4_A 37 YGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENA 116 (995)
T ss_dssp HCCSSCCCCCCCCHHHHHHGGGCSHHHHHHHHHHHHHHHHTTSCCSSGGGSSSHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred cCCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 899999875 5799999999999999998888888877652 45667788888888999999999987 5
Q ss_pred HhhhhcCCC-eEEEEecCCe--eEEeeCCCcCCCcEEEEccCCcEEeeeEEEEee---EEEEeCCcccCCCccccccCC-
Q psy6097 68 LHDTVNTVD-KVTVKRSKGL--YEEVPTTHLVPGDIIVIPKHGCTLACDATLLQG---NCIVNESMLTVHGALFIMWED- 140 (167)
Q Consensus 68 l~~~~~~~~-~~~V~r~~g~--~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g---~~~Vdes~ltGEs~p~~k~~~- 140 (167)
++++.+..+ +++|+|+ |. .+++++++|+|||+|.+ ++||++||||+++++ +|.||||+|||||.|+.|...
T Consensus 117 l~~L~~~~~~~a~V~R~-g~~~~~~I~~~~lv~GDiV~l-~~Gd~IPaD~~ll~~~s~~l~VdeS~LTGES~pv~K~~~~ 194 (995)
T 3ar4_A 117 IEALKEYEPEMGKVYRA-DRKSVQRIKARDIVPGDIVEV-AVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEP 194 (995)
T ss_dssp HHHHGGGSCSEEEEEBT-TCSSCEEEEGGGCCTTCEEEE-ETTCBCCSEEEEEEECSSCEEEECHHHHCCCSCEEECCSC
T ss_pred HHHHHccCCCeEEEEeC-CCceEEEEEHHHCCCCCEEEE-CCCCcccccEEEEEEeeceEEEEcccccCCCcceeccccc
Confidence 666554443 8999998 55 59999999999999999 899999999999764 589999999999999999321
Q ss_pred ----------CcCEEeeccEEEEEEeeC
Q psy6097 141 ----------VNHTLYCGTVILQARYHG 158 (167)
Q Consensus 141 ----------~~~~v~aGt~v~~g~~~~ 158 (167)
++|.+|+||.+.+|++.+
T Consensus 195 ~~~~~~~~~~~~~~v~~GT~v~~G~~~~ 222 (995)
T 3ar4_A 195 VPDPRAVNQDKKNMLFSGTNIAAGKALG 222 (995)
T ss_dssp CCCTTCCGGGCTTEECTTCEEEECEEEE
T ss_pred cCCcccCcccccceEecCCEEEcceEEE
Confidence 237999999999998865
No 5
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=99.96 E-value=3.4e-33 Score=250.64 Aligned_cols=154 Identities=25% Similarity=0.316 Sum_probs=134.3
Q ss_pred CCCCccCCCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhh
Q psy6097 1 YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEA-------YYYYTGAIICMSVFGIVSSVIQTRQK--SLHDT 71 (167)
Q Consensus 1 yG~N~i~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~ 71 (167)
||+|+++.++++.|..|+++|++|+.++++++++++++.+ .|.+++.++++++++..+++++++|+ .++++
T Consensus 45 ~G~N~l~~~~~~~~~~~l~~~~~p~~~il~~aaiis~~l~~~~~~~~~~~~~~~I~~~v~i~~~l~~~qe~ka~~al~~L 124 (885)
T 3b8c_A 45 FGPNKLEEKKESKLLKFLGFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAAL 124 (885)
T ss_dssp CCSCCTTTTCCCTTSSTTSCCCGGGSSHHHHHHHGGGGSSCCTTSCSCCTTHHHHHHHTTTTTTTTTTTTTTTTTHHHHT
T ss_pred cCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999888999999999999999877777777666554 56666777788888888999999987 56666
Q ss_pred hcCC-CeEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeE-EEEeCCcccCCCccccccCCCcCEEeecc
Q psy6097 72 VNTV-DKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN-CIVNESMLTVHGALFIMWEDVNHTLYCGT 149 (167)
Q Consensus 72 ~~~~-~~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~-~~Vdes~ltGEs~p~~k~~~~~~~v~aGt 149 (167)
.+.. ++++|+|| |+++++++++|+|||+|.+ ++||++||||++++|+ +.||||+|||||.|+.| .+++.+|+||
T Consensus 125 ~~~~~~~a~V~Rd-G~~~~I~~~~Lv~GDiV~l-~~Gd~IPaDg~ll~g~~l~VdES~LTGES~Pv~K--~~g~~v~~GT 200 (885)
T 3b8c_A 125 MAGLAPKTKVLRD-GKWSEQEAAILVPGDIVSI-KLGDIIPADARLLEGDPLKVDQSALTGESLPVTK--HPGQEVFSGS 200 (885)
T ss_dssp TTSCSCCCCCCCS-SCSCCCCTTTTCTTSBCCC-CSSCCCSSCCCCCCSSCBCCCCCSTTCCSSCCCB--SSCCCCCSCC
T ss_pred hccCCCeEEEEEC-CEEEEEEHHHCCCCCEEEE-CCCCEEeeceEEEEcCcccccccccCCCCcceEe--cCCCccccCe
Confidence 5443 37899999 9999999999999999999 8999999999999996 58999999999999999 8999999999
Q ss_pred EEEEEEeeC
Q psy6097 150 VILQARYHG 158 (167)
Q Consensus 150 ~v~~g~~~~ 158 (167)
.+.+|++.+
T Consensus 201 ~v~~G~~~~ 209 (885)
T 3b8c_A 201 TCKQGEIEA 209 (885)
T ss_dssp CCCSCCCCC
T ss_pred EEeeeEEEE
Confidence 999997754
No 6
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=99.93 E-value=3.6e-27 Score=163.95 Aligned_cols=78 Identities=21% Similarity=0.351 Sum_probs=74.7
Q ss_pred eEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeEEEEeCCcccCCCccccccCCCcCEEeeccEEEEEEe
Q psy6097 77 KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQARY 156 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g~~ 156 (167)
+++|+|+ |+++++++++|+|||+|.+ ++|+++||||++++|++.||||+||||+.|+.| .+++.+|+||.+.+|.+
T Consensus 13 ~a~v~r~-g~~~~i~~~~l~~GDiv~v-~~G~~iPaDg~v~~g~~~vdeS~LTGEs~pv~k--~~g~~v~aGt~~~~G~~ 88 (113)
T 2hc8_A 13 TAVVIRD-GKEIAVPVEEVAVGDIVIV-RPGEKIPVDGVVVEGESYVDESMISGEPVPVLK--SKGDEVFGATINNTGVL 88 (113)
T ss_dssp EEEEEET-TEEEEEEGGGCCTTCEEEE-CTTCBCCSEEEEEECCEEEECHHHHCCSSCEEE--CTTCEECTTCEECSSCE
T ss_pred EEEEEEC-CEEEEEEHHHCCCCCEEEE-CCCCEEeeeEEEEEceEEEEccccCCCCccEEE--CCCCEEEeCCEEeeceE
Confidence 7999998 9999999999999999999 999999999999999999999999999999999 89999999999999877
Q ss_pred eC
Q psy6097 157 HG 158 (167)
Q Consensus 157 ~~ 158 (167)
..
T Consensus 89 ~~ 90 (113)
T 2hc8_A 89 KI 90 (113)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 7
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=99.92 E-value=5e-26 Score=160.59 Aligned_cols=87 Identities=20% Similarity=0.291 Sum_probs=76.8
Q ss_pred HHhhhhcCCC-eEEEEecCCe------eEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeEEEEeCCcccCCCccccccC
Q psy6097 67 SLHDTVNTVD-KVTVKRSKGL------YEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTVHGALFIMWE 139 (167)
Q Consensus 67 ~l~~~~~~~~-~~~V~r~~g~------~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~~~Vdes~ltGEs~p~~k~~ 139 (167)
.++++....+ +++|+|+ |. ++.+++++|+|||+|.+ ++|+++||||++++|++.||||+||||+.|+.|
T Consensus 8 ~l~~L~~l~p~~a~v~r~-g~~~~~~~~~~v~~~~l~~GDiv~v-~~G~~iPaDg~vi~g~~~vdeS~LTGEs~pv~k-- 83 (124)
T 2kij_A 8 ALAKLISLQATEATIVTL-DSDNILLSEEQVDVELVQRGDIIKV-VPGGKFPVDGRVIEGHSMVDESLITGEAMPVAK-- 83 (124)
T ss_dssp HHHHHHHTCCSEEEEEEC-SSSTTCCEEEEEETTTCCTTCEEEC-CTTCBCSSCEEECSCCCEEECTTTTCCSSCEEC--
T ss_pred HHHHHhccCCCEEEEEEC-CCCCceeEEEEEeHHHCCCCCEEEE-CCCCEEEeeEEEEEccEEEEeccccCCCccEEe--
Confidence 4555544443 8999996 42 68899999999999999 999999999999999999999999999999999
Q ss_pred CCcCEEeeccEEEEEEee
Q psy6097 140 DVNHTLYCGTVILQARYH 157 (167)
Q Consensus 140 ~~~~~v~aGt~v~~g~~~ 157 (167)
..++.+|+||.+.+|.+.
T Consensus 84 ~~g~~v~aGt~~~~G~~~ 101 (124)
T 2kij_A 84 KPGSTVIAGSINQNGSLL 101 (124)
T ss_dssp CTTEEECTTCEEESSCCE
T ss_pred CCCCEEEcCCEEeeeEEE
Confidence 899999999999998765
No 8
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=99.91 E-value=5.4e-25 Score=194.36 Aligned_cols=114 Identities=18% Similarity=0.306 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCC-eEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEE
Q psy6097 41 YYYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLL 117 (167)
Q Consensus 41 ~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~~-~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl 117 (167)
|+..++.++++++++.+++.+.++|+ .++++.+..+ +++++|.||+++++++++|+|||+|.+ ++||++||||+|+
T Consensus 187 yfe~a~~ii~~~llg~~le~~a~~~~~~ai~~L~~l~p~~a~vv~~dg~~~~v~~~~l~~GDiv~v-~~Ge~IPaDg~vl 265 (736)
T 3rfu_A 187 YFEAAAVITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDGSEEEVSLDNVAVGDLLRV-RPGEKIPVDGEVQ 265 (736)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHTCCCCCEEEEEETTEEEEEEETTTCCTTCEECC-CSSEECCSCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCEEEEEEHhhCCCCCEEEE-CCCCcccccEEEE
Confidence 45556667788888989988888776 7777777665 888888449999999999999999999 9999999999999
Q ss_pred eeEEEEeCCcccCCCccccccCCCcCEEeeccEEEEEEee
Q psy6097 118 QGNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQARYH 157 (167)
Q Consensus 118 ~g~~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g~~~ 157 (167)
+|++.||||+|||||.|+.| ++++.+|+||.+.+|...
T Consensus 266 ~G~~~VDES~LTGES~Pv~K--~~gd~v~~Gt~~~~G~~~ 303 (736)
T 3rfu_A 266 EGRSFVDESMVTGEPIPVAK--EASAKVIGATINQTGSFV 303 (736)
T ss_dssp SSCEEEECSSSTTCSSCEEE--CTTCEECTTCEEESCCCC
T ss_pred ECceEeeecccCCccccEEe--ccCCcCCCceEeccceEE
Confidence 99999999999999999999 999999999999988764
No 9
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=99.91 E-value=1.9e-25 Score=195.09 Aligned_cols=113 Identities=17% Similarity=0.288 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCC-eEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEe
Q psy6097 42 YYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQ 118 (167)
Q Consensus 42 ~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~~-~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~ 118 (167)
+..++.+++++.+..+++.+.++|+ .++++.+..+ +++|+|+ |+++++++++|+|||+|.+ ++||++||||++++
T Consensus 96 ~~~~~~i~~~~~ig~~le~~~~~~~~~~l~~l~~l~~~~a~v~r~-g~~~~i~~~~l~~GDiv~v-~~Ge~IPaDg~vl~ 173 (645)
T 3j08_A 96 YETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRD-GKEIAVPVEEVAVGDIVIV-RPGEKIPVDGVVVE 173 (645)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHTSCSEEEEEET-TEEEEEEGGGCCTTCEEEE-CTTCBCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC-CEEEEEEHHHCCCCCEEEE-CCCCEEeeEEEEEE
Confidence 3345667777777878877777665 5566555444 8999999 9999999999999999999 99999999999999
Q ss_pred eEEEEeCCcccCCCccccccCCCcCEEeeccEEEEEEeeC
Q psy6097 119 GNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQARYHG 158 (167)
Q Consensus 119 g~~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g~~~~ 158 (167)
|++.||||+|||||.|+.| ++++.+|+||.+.+|...+
T Consensus 174 G~~~VdeS~LTGES~Pv~K--~~g~~v~~Gt~~~~g~~~~ 211 (645)
T 3j08_A 174 GESYVDESMISGEPVPVLK--SKGDEVFGATINNTGVLKI 211 (645)
T ss_dssp CCEEEECHHHHCCSSCEEE--CTTCEECTTCEECSSCEEE
T ss_pred CcEEEEcccccCCCCceec--CCCCEeeccEEEecCcEEE
Confidence 9999999999999999999 9999999999999887653
No 10
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=99.90 E-value=5.5e-25 Score=194.26 Aligned_cols=113 Identities=17% Similarity=0.288 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCC-eEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEe
Q psy6097 42 YYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTVD-KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQ 118 (167)
Q Consensus 42 ~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~~-~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~ 118 (167)
+..++.+++++.+..+++.+.++|+ .++++.+..+ +++|+|+ |+++++++++|+|||+|.+ ++||++||||++++
T Consensus 174 ~~~~~~i~~~~~ig~~le~~~~~~~~~~i~~l~~l~~~~a~v~r~-g~~~~i~~~~l~~GDiv~v-~~Ge~IPaDg~vl~ 251 (723)
T 3j09_A 174 YETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRD-GKEIAVPVEEVAVGDIVIV-RPGEKIPVDGVVVE 251 (723)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHTSCSEEEEEET-TEEEEEEGGGCCTTCEEEE-CTTCBCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeEEEEC-CEEEEEEHHHCCCCCEEEE-CCCCEEeeEEEEEE
Confidence 4445667777778888887777766 5666655544 8999999 9999999999999999999 99999999999999
Q ss_pred eEEEEeCCcccCCCccccccCCCcCEEeeccEEEEEEeeC
Q psy6097 119 GNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQARYHG 158 (167)
Q Consensus 119 g~~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g~~~~ 158 (167)
|++.||||+|||||.|+.| ++++.+|+||.+.+|...+
T Consensus 252 G~~~VdeS~LTGES~pv~K--~~g~~v~~Gt~~~~g~~~~ 289 (723)
T 3j09_A 252 GESYVDESMISGEPVPVLK--SKGDEVFGATINNTGVLKI 289 (723)
T ss_dssp CCEEEECHHHHCCSSCEEE--CTTCEECTTCEECSSCEEE
T ss_pred CCeEEecccccCCCcceee--cCCCeeccceEEecCcEEE
Confidence 9999999999999999999 9999999999999887653
No 11
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=86.92 E-value=0.77 Score=33.33 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=26.7
Q ss_pred eEEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeee
Q psy6097 77 KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACD 113 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D 113 (167)
...+.++ |...++.+++|.+||.|.+ ..+..++.|
T Consensus 104 p~~v~~~-g~~~w~~A~eLk~GD~v~~-~~~~~~~~~ 138 (186)
T 2jmz_A 104 PVYISKT-GEVLEINAEMVKVGDYIYI-PKNNTINLD 138 (186)
T ss_dssp EEEEEET-TEEEEEEGGGCCTTSEEEE-ECSSSEEEE
T ss_pred EEEEeCC-CeEEEEEhhcCCCCCEEEe-cccCCccce
Confidence 4555555 7888999999999999999 565555544
No 12
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=81.13 E-value=1 Score=34.15 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=25.1
Q ss_pred eEEEEecCCeeEEeeC-------CCcCCCcEEEEccCCc
Q psy6097 77 KVTVKRSKGLYEEVPT-------THLVPGDIIVIPKHGC 108 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~~-------~~lv~GDii~v~~~g~ 108 (167)
+++|++.||+....+. .++.|||.|.||...+
T Consensus 167 ~v~VI~~nG~v~~~~~a~Wn~~~~~l~PG~~I~Vp~~~~ 205 (236)
T 3p42_A 167 NVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAH 205 (236)
T ss_dssp EEEEECTTSCEEEEECSSTTCCCEECCTTCEEEECBCTT
T ss_pred cEEEEeCCCCEEeccccccccCCCCCCCCCEEEEeCCcc
Confidence 7889998898877763 3799999999954443
No 13
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=77.08 E-value=2.4 Score=30.63 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=24.6
Q ss_pred eEEEEecCCeeEEeeCCCcCCCcEEEEccCCcE
Q psy6097 77 KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCT 109 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~ 109 (167)
...+.++ |...++.+++|.+||.|.+ ..++.
T Consensus 94 ~~~v~~~-g~~~~~~A~eLk~GD~v~v-~~~~~ 124 (185)
T 2lcj_A 94 PVLVYEN-GRFIEKRAFEVKEGDKVLV-SELEL 124 (185)
T ss_dssp EEEEEET-TEEEEEEGGGCCTTCEEEE-CCCCC
T ss_pred EEEEecC-CeEEEEEHHHCCCCCEEEE-ccccc
Confidence 4455666 7888999999999999999 66553
No 14
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=58.61 E-value=3 Score=36.07 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=22.2
Q ss_pred eeCCCcCCCcEEEEccCCcEEe-eeEEE
Q psy6097 90 VPTTHLVPGDIIVIPKHGCTLA-CDATL 116 (167)
Q Consensus 90 i~~~~lv~GDii~v~~~g~~iP-~D~~v 116 (167)
+.-.+|.+||.|.|.++||.|| +.+++
T Consensus 374 i~~~di~iGD~V~V~rAGdVIP~V~~vv 401 (615)
T 3sgi_A 374 IKRKGVLIGDTVVIRKAGDVIPEVLGPV 401 (615)
T ss_dssp TTTTCCCBTCEEEEECCSSSSCCCCEEC
T ss_pred HHHcCCCCCCEEEEEEcCCCccceeeec
Confidence 5678899999999988899999 34444
No 15
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=53.02 E-value=4.7 Score=35.25 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=19.7
Q ss_pred eeCCCcCCCcEEEEccCCcEEe
Q psy6097 90 VPTTHLVPGDIIVIPKHGCTLA 111 (167)
Q Consensus 90 i~~~~lv~GDii~v~~~g~~iP 111 (167)
+...+|.+||.|.|.++||.||
T Consensus 362 i~~~di~iGD~V~V~rAGdvIP 383 (667)
T 1dgs_A 362 IEELDIRIGDWVLVHKAGGVIP 383 (667)
T ss_dssp HHHTTCBSSCEEEEEEETTTEE
T ss_pred HHHcCCCCCCEEEEEECCCcch
Confidence 4578899999999988999999
No 16
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=52.86 E-value=3.5 Score=35.45 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=21.2
Q ss_pred eCCCcCCCcEEEEccCCcEEe-eeEEE
Q psy6097 91 PTTHLVPGDIIVIPKHGCTLA-CDATL 116 (167)
Q Consensus 91 ~~~~lv~GDii~v~~~g~~iP-~D~~v 116 (167)
...+|.+||.|.|.++||.|| .+.++
T Consensus 365 ~~~di~iGD~V~V~rAGdVIP~I~~Vv 391 (586)
T 4glx_A 365 ERLGLRIGDKVVIRRAGDVIPQVVNVV 391 (586)
T ss_dssp HHHTCEETCEEEEEEETTTEEEEEEEC
T ss_pred HhcCCCcCCEEEEEECCCcCccceeee
Confidence 357899999999988999999 44444
No 17
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=50.43 E-value=5.1 Score=35.07 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.5
Q ss_pred eeCCCcCCCcEEEEccCCcEEe
Q psy6097 90 VPTTHLVPGDIIVIPKHGCTLA 111 (167)
Q Consensus 90 i~~~~lv~GDii~v~~~g~~iP 111 (167)
|...+|.+||.|.|.++||.||
T Consensus 364 i~~~di~iGD~V~V~rAGdvIP 385 (671)
T 2owo_A 364 IERLGLRIGDKVVIRRAGDVIP 385 (671)
T ss_dssp HHHHTCCBTCEEEEEEETTTEE
T ss_pred HHHcCCCCCCEEEEEECCCccc
Confidence 4467899999999988999999
No 18
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=48.16 E-value=11 Score=25.94 Aligned_cols=30 Identities=10% Similarity=0.079 Sum_probs=21.6
Q ss_pred eEEEEecC-CeeEEeeCCCcCCCcEEEEccCC
Q psy6097 77 KVTVKRSK-GLYEEVPTTHLVPGDIIVIPKHG 107 (167)
Q Consensus 77 ~~~V~r~~-g~~~~i~~~~lv~GDii~v~~~g 107 (167)
.+.+...+ +....+.+++|++||.|.+ ..|
T Consensus 73 ~i~v~~~~~~~~~~v~A~~l~~GD~v~~-~~~ 103 (145)
T 1at0_A 73 LVSVWQPESQKLTFVFADRIEEKNQVLV-RDV 103 (145)
T ss_dssp EEEEEETTTTEEEEEEGGGCCTTCEEEE-ECT
T ss_pred EEEEecCCCCcEEEEEHHHCcCCCEEEE-ecC
Confidence 34444431 3467899999999999999 665
No 19
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=46.53 E-value=31 Score=26.43 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=49.3
Q ss_pred EeeCCCcCCCc---EEEEccCCcEEee-------eE-EEEeeEEEEeCCcccCCCccccccCCCcCEEeeccEEEEEEe-
Q psy6097 89 EVPTTHLVPGD---IIVIPKHGCTLAC-------DA-TLLQGNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQARY- 156 (167)
Q Consensus 89 ~i~~~~lv~GD---ii~v~~~g~~iP~-------D~-~vl~g~~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g~~- 156 (167)
.+..+++...- ++.+ ++|..+|. .+ .||+|...+. +.|+-.|+ ++|+.+|.+..+-++-.
T Consensus 176 ~l~p~~~~~d~~~~~~t~-~PG~~~p~~e~H~~eh~~~vL~G~g~y~---l~~~~~~V----~~GD~i~~~~~~~h~~~n 247 (266)
T 4e2q_A 176 KLLPMSVAYDFNIHTMDF-QPGEFLNVKEVHYNQHGLLLLEGQGIYR---LGDNWYPV----QAGDVIWMAPFVPQWYAA 247 (266)
T ss_dssp ESSCCSTTCSEEEEEEEE-CTTCBCSSCCCCSCCEEEEEEECEEEEE---ETTEEEEE----ETTCEEEECTTCCEEEEE
T ss_pred EccCcccccceEEEEEEE-CCCcCcCCceEcccceEEEEEeceEEEE---ECCEEEEe----cCCCEEEECCCCcEEEEe
Confidence 33455554433 4557 78999986 44 4568886654 56777888 88999999999988866
Q ss_pred eCCCccceee
Q psy6097 157 HGDEYLPWEL 166 (167)
Q Consensus 157 ~~~~~~~~~~ 166 (167)
.|+++...+|
T Consensus 248 ~G~e~~~yl~ 257 (266)
T 4e2q_A 248 LGKTRSRYLL 257 (266)
T ss_dssp ESSSCEEEEE
T ss_pred CCCCCEEEEE
Confidence 6777766554
No 20
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=46.15 E-value=25 Score=26.79 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=41.8
Q ss_pred EEEEccCCcEEeee--------EEEEeeEEEEeCCcccCCCccccccCCCcCEEeeccEEEEE-EeeCCCccceee
Q psy6097 100 IIVIPKHGCTLACD--------ATLLQGNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQA-RYHGDEYLPWEL 166 (167)
Q Consensus 100 ii~v~~~g~~iP~D--------~~vl~g~~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g-~~~~~~~~~~~~ 166 (167)
++.+ ++|..+|-+ ..+|+|.+.+. +.|+..++ ++|+.+|.+.-+-++ ...|++++..++
T Consensus 195 ~~~l-~pG~~i~~~~~h~~e~~~~il~G~~~~~---~~~~~~~v----~~GD~~~~~~~~~h~~~n~g~~~~~yl~ 262 (278)
T 1sq4_A 195 IVNF-EPGGVIPFAETHVMEHGLYVLEGKAVYR---LNQDWVEV----EAGDFMWLRAFCPQACYSGGPGRFRYLL 262 (278)
T ss_dssp EEEE-CSSSEESCCCCCSEEEEEEEEECEEEEE---ETTEEEEE----ETTCEEEEEESCCEEEECCSSSCEEEEE
T ss_pred EEEE-CCCCCcCCCCCCCccEEEEEEeCEEEEE---ECCEEEEe----CCCCEEEECCCCCEEEEcCCCCCEEEEE
Confidence 3556 588888863 67789987554 34777777 889999998877777 445776665554
No 21
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=46.06 E-value=17 Score=21.83 Aligned_cols=25 Identities=8% Similarity=-0.084 Sum_probs=21.2
Q ss_pred CCeEEEEecCCeeEEeeCCCcCCCc
Q psy6097 75 VDKVTVKRSKGLYEEVPTTHLVPGD 99 (167)
Q Consensus 75 ~~~~~V~r~~g~~~~i~~~~lv~GD 99 (167)
..+|.|.-.||....+.++||.+|+
T Consensus 41 ~gtC~V~F~D~s~~w~~~kdi~~~~ 65 (66)
T 2eqj_A 41 KQSCFIIFEDSSKSWVLWKDIQTGA 65 (66)
T ss_dssp TTEEEEEETTTEEEEEETTTEECCC
T ss_pred CcEEEEEEccCCEEEEEeecccccC
Confidence 3478888777999999999999986
No 22
>4e2u_A PHO RADA intein; HINT-fold, unknown function; 1.58A {Pyrococcus horikoshii} PDB: 2lqm_A 4e2t_A*
Probab=45.65 E-value=35 Score=23.88 Aligned_cols=19 Identities=32% Similarity=0.587 Sum_probs=16.9
Q ss_pred EEeeCCCcCCCcEEEEccCC
Q psy6097 88 EEVPTTHLVPGDIIVIPKHG 107 (167)
Q Consensus 88 ~~i~~~~lv~GDii~v~~~g 107 (167)
.++.+++|.+||.+.+ ..|
T Consensus 107 ~w~~a~~L~~Gd~l~~-~~g 125 (168)
T 4e2u_A 107 QWVPAAEVKPGDVVVG-VRN 125 (168)
T ss_dssp EEEEGGGCCTTCEEEE-EET
T ss_pred EEEEHHHCCCCCEEEe-ccC
Confidence 6788999999999999 666
No 23
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=44.11 E-value=8 Score=26.60 Aligned_cols=20 Identities=25% Similarity=0.640 Sum_probs=16.2
Q ss_pred EEeeCCCcCCCcEEEEccCCc
Q psy6097 88 EEVPTTHLVPGDIIVIPKHGC 108 (167)
Q Consensus 88 ~~i~~~~lv~GDii~v~~~g~ 108 (167)
..++.++++|||+|.. ..+.
T Consensus 61 ~~V~~~~l~pGDLvFf-~~~~ 80 (135)
T 2k1g_A 61 KSVSRSNLRTGDLVLF-RAGS 80 (135)
T ss_dssp EEECGGGCCTTEEEEE-EETT
T ss_pred cEecHHHccCCcEEEE-CCCC
Confidence 4678889999999999 6543
No 24
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=40.65 E-value=60 Score=19.83 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=23.2
Q ss_pred eEEEEecCCeeEEee---CCCcCCCcEEEEccCCcE
Q psy6097 77 KVTVKRSKGLYEEVP---TTHLVPGDIIVIPKHGCT 109 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~---~~~lv~GDii~v~~~g~~ 109 (167)
.++|-.+ |..++++ ..+..|||-+.+ +.|--
T Consensus 16 ~A~vd~~-Gv~r~V~l~Lv~~~~vGD~VLV-H~GfA 49 (75)
T 2z1c_A 16 VAVVDFG-GVKREVRLDLMPDTKPGDWVIV-HTGFA 49 (75)
T ss_dssp EEEEEET-TEEEEEECTTSTTCCTTCEEEE-ETTEE
T ss_pred EEEEEcC-CEEEEEEEEEeCCCCCCCEEEE-ecchh
Confidence 4666566 8777777 456789999999 88844
No 25
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=38.83 E-value=18 Score=24.58 Aligned_cols=20 Identities=25% Similarity=0.640 Sum_probs=16.1
Q ss_pred EEeeCCCcCCCcEEEEccCCc
Q psy6097 88 EEVPTTHLVPGDIIVIPKHGC 108 (167)
Q Consensus 88 ~~i~~~~lv~GDii~v~~~g~ 108 (167)
..++.++++|||+|.. ..+.
T Consensus 61 ~~v~~~~l~pGDLvff-~~~~ 80 (136)
T 2jyx_A 61 KSVSRSNLRTGDLVLF-RAGS 80 (136)
T ss_dssp EECCTTTCCTTEEEEE-ECSS
T ss_pred eEcchHhCCCCCEEEE-CCCC
Confidence 4667889999999999 6553
No 26
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=37.56 E-value=38 Score=21.98 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=10.7
Q ss_pred CCCcCCCcEEEEccC
Q psy6097 92 TTHLVPGDIIVIPKH 106 (167)
Q Consensus 92 ~~~lv~GDii~v~~~ 106 (167)
..|+.+||+|.. ..
T Consensus 79 ~~dik~GD~Ie~-ye 92 (99)
T 1d1n_A 79 FNDIKEGDVIEA-YV 92 (99)
T ss_dssp CSSCSSCSEEEE-EC
T ss_pred cCCCCCCCEEEE-EE
Confidence 568888888877 44
No 27
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=37.45 E-value=20 Score=22.31 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=11.0
Q ss_pred CCCcCCCcEEEEccC
Q psy6097 92 TTHLVPGDIIVIPKH 106 (167)
Q Consensus 92 ~~~lv~GDii~v~~~ 106 (167)
--+|.+||+|.+ ..
T Consensus 33 ll~L~~GdVi~L-d~ 46 (84)
T 1o9y_A 33 LRRLDAGTILEV-TG 46 (84)
T ss_dssp HHTCCTTCEEEE-CS
T ss_pred HhcCCCCCEEEe-CC
Confidence 557889999999 53
No 28
>2cw8_A Endonuclease PI-pkoii; hydrolase; 2.50A {Thermococcus kodakarensis} PDB: 2cw7_A
Probab=37.37 E-value=38 Score=28.47 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=22.0
Q ss_pred eEEEEecCCeeEEeeCCCcCCCcEEEEc
Q psy6097 77 KVTVKRSKGLYEEVPTTHLVPGDIIVIP 104 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~~~~lv~GDii~v~ 104 (167)
+..+.++ |+..++.+++|.+||.|.++
T Consensus 97 ~~l~~~~-g~~~~~~a~elk~GD~v~~~ 123 (537)
T 2cw8_A 97 SLFSVRN-GELVEVTGDELKPGDLVAVP 123 (537)
T ss_dssp EEEEEET-TEEEEEETTTCCTTCEEEEE
T ss_pred eEEEEEC-CEEEEEEhhcCCCCCEEEEe
Confidence 3445555 88999999999999999983
No 29
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=36.21 E-value=22 Score=28.40 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=22.3
Q ss_pred eEEEEecCCeeEEeeC------------CCcCCCcEEEEccCCc
Q psy6097 77 KVTVKRSKGLYEEVPT------------THLVPGDIIVIPKHGC 108 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~~------------~~lv~GDii~v~~~g~ 108 (167)
.+++.|+ |+...++- -.|++||+|.|++.++
T Consensus 192 ~V~l~R~-g~~~~idl~~ll~~g~~~~~~~L~~GD~I~Vp~~~~ 234 (359)
T 2j58_A 192 NVVLTHN-GKDTKISLYALMQKGDLTQNHLLYHGDILFIPSNDD 234 (359)
T ss_dssp CEEEEET-TEEEEECHHHHHTTCBGGGCCBCCTTCEEEECBGGG
T ss_pred eEEEEEC-CeEEEEEHHHHhhcCCcccceeccCCCeEEEeecee
Confidence 6889998 87666542 3488999999954444
No 30
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=33.48 E-value=51 Score=22.15 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=10.8
Q ss_pred CC-CcCCCcEEEEccCCc
Q psy6097 92 TT-HLVPGDIIVIPKHGC 108 (167)
Q Consensus 92 ~~-~lv~GDii~v~~~g~ 108 (167)
.. |+++||+|.. ..-.
T Consensus 86 fniDik~GDiIE~-ye~~ 102 (120)
T 2crv_A 86 EKVEFKPGDQVIC-YEEN 102 (120)
T ss_dssp TTSCCCTTEEEEE-ECCS
T ss_pred CCCCCCCCCEEEE-EEEE
Confidence 55 7788888877 5433
No 31
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=33.11 E-value=26 Score=21.22 Aligned_cols=24 Identities=29% Similarity=0.648 Sum_probs=15.2
Q ss_pred EEEEecCCeeEEee--CCCcCCCcEEEE
Q psy6097 78 VTVKRSKGLYEEVP--TTHLVPGDIIVI 103 (167)
Q Consensus 78 ~~V~r~~g~~~~i~--~~~lv~GDii~v 103 (167)
+.+.|+ |+.. ++ ...|.+||++.+
T Consensus 44 ~~I~R~-~~~~-~p~~~~~l~~GD~l~v 69 (86)
T 3jxo_A 44 AAIVRG-GVLV-VPRGDTEILSGDKLYV 69 (86)
T ss_dssp EEEEET-TEEE-CCCTTCBCCTTCEEEE
T ss_pred EEEEEC-CEEE-CCCCCCEECCCCEEEE
Confidence 346677 6543 34 445778888887
No 32
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=32.39 E-value=21 Score=24.02 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=16.0
Q ss_pred EeeCCCcCCCcEEEEccCCc
Q psy6097 89 EVPTTHLVPGDIIVIPKHGC 108 (167)
Q Consensus 89 ~i~~~~lv~GDii~v~~~g~ 108 (167)
++.+++|+|||.+.+ ..|.
T Consensus 81 w~~a~~L~~Gd~v~~-~~~~ 99 (139)
T 2in0_A 81 WRAAGELRKGDRVAV-RDVE 99 (139)
T ss_dssp EEEGGGCCTTCEEEE-ECTT
T ss_pred cEEHHHCCCCCEEEe-CCCc
Confidence 467899999999999 6664
No 33
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=29.21 E-value=27 Score=23.12 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=12.8
Q ss_pred eCCCcCCCcEEEEccCC
Q psy6097 91 PTTHLVPGDIIVIPKHG 107 (167)
Q Consensus 91 ~~~~lv~GDii~v~~~g 107 (167)
+..+.+|||+|.+ ..+
T Consensus 4 ~~~ep~pGDlI~~-~r~ 19 (125)
T 2lkt_A 4 PHQEPKPGDLIEI-FRL 19 (125)
T ss_dssp SSCCCCTTCEEEE-ECS
T ss_pred CCCCCCCCCEEEE-eCC
Confidence 4678999999999 543
No 34
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=27.60 E-value=31 Score=24.48 Aligned_cols=15 Identities=27% Similarity=0.155 Sum_probs=11.8
Q ss_pred CCCcCCCcEEEEccCC
Q psy6097 92 TTHLVPGDIIVIPKHG 107 (167)
Q Consensus 92 ~~~lv~GDii~v~~~g 107 (167)
.++|++||+|.. +.+
T Consensus 2 ~~~l~~GDlvf~-~~~ 16 (186)
T 2if6_A 2 LWQPQTGDIIFQ-ISR 16 (186)
T ss_dssp -CCCCTTCEEEE-CCC
T ss_pred cccCCCCCEEEE-EcC
Confidence 468999999999 653
No 35
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=25.63 E-value=1.5e+02 Score=21.31 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=36.3
Q ss_pred CCCcEEEEccC-CcE-EeeeEEEE--------------ee-EE----EEeCCcccCCCccccccCCCcCEEeeccEEEEE
Q psy6097 96 VPGDIIVIPKH-GCT-LACDATLL--------------QG-NC----IVNESMLTVHGALFIMWEDVNHTLYCGTVILQA 154 (167)
Q Consensus 96 v~GDii~v~~~-g~~-iP~D~~vl--------------~g-~~----~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g 154 (167)
..||=+.+.+. |.. -||||.|. +| .. =+|+..|.||-.-... +.|+.|-+|..+++=
T Consensus 60 ~mGdG~AI~P~~g~v~AP~dG~V~~vfpT~HAigi~s~~G~EvLIHIGiDTV~L~G~gF~~~V--~~Gd~Vk~Gd~L~~f 137 (183)
T 3our_B 60 IVGDGIAIKPTGNKMVAPVNGTIGKIFETNHAFSIESDDGVELFVHFGIDTVELKGEGFTRIA--EEGQTVKAGDTVIEF 137 (183)
T ss_dssp SSCEEEEEEECSSEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTEEECS--CTTCEECTTCEEEEE
T ss_pred CccCeEEEEcCCCEEEeCCCeEEEEECCCCCEEEEEeCCCCEEEEEecccccccCCccceEEE--eCcCEEcCCCEEEEE
Confidence 35776666233 433 39999886 23 22 2588888888654444 678888888777653
No 36
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=25.40 E-value=1e+02 Score=17.58 Aligned_cols=26 Identities=19% Similarity=0.047 Sum_probs=19.1
Q ss_pred eEEEEecCCeeEEee---CCCcCCCcEEEE
Q psy6097 77 KVTVKRSKGLYEEVP---TTHLVPGDIIVI 103 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~---~~~lv~GDii~v 103 (167)
.+.|..| |+...-. ...|..||.|.+
T Consensus 29 ~v~vavN-~~~v~~~~~~~~~L~dgD~v~i 57 (64)
T 2cu3_A 29 GVAVLLN-EEAFLGLEVPDRPLRDGDVVEV 57 (64)
T ss_dssp GEEEEET-TEEEEGGGCCCCCCCTTCEEEE
T ss_pred cEEEEEC-CEECCccccCCcCCCCCCEEEE
Confidence 5778888 7654432 357999999988
No 37
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=24.95 E-value=32 Score=23.48 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=14.6
Q ss_pred EEeeCCCcCCCcEEEEccC
Q psy6097 88 EEVPTTHLVPGDIIVIPKH 106 (167)
Q Consensus 88 ~~i~~~~lv~GDii~v~~~ 106 (167)
..++.++++|||+|.. ..
T Consensus 83 ~~v~~~~~~pGDlvff-~~ 100 (142)
T 3gt2_A 83 QKILPQQARKGDLIFY-GP 100 (142)
T ss_dssp EEECGGGCCTTCEEEE-SG
T ss_pred ceechhhCCCCCEEEe-CC
Confidence 4567789999999998 54
No 38
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=24.21 E-value=45 Score=20.08 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=18.1
Q ss_pred cCCeeEEeeCCCcCCCcEEEEccCCcEE
Q psy6097 83 SKGLYEEVPTTHLVPGDIIVIPKHGCTL 110 (167)
Q Consensus 83 ~~g~~~~i~~~~lv~GDii~v~~~g~~i 110 (167)
| |+...-+...+.+||.|.+ .|..+
T Consensus 51 N-G~~v~~~~~~v~~gd~I~v--~~~~~ 75 (79)
T 1p9k_A 51 D-GAVETRKRCKIVAGQTVSF--AGHSV 75 (79)
T ss_dssp T-TBCCCCSSCCCCSSEEEEE--TTEEE
T ss_pred C-CEEecCCCCCCCCCCEEEE--CCEEE
Confidence 6 7665566778889999988 35544
No 39
>3uep_A YSCQ-C, type III secretion protein; cytosol, protein transport; 2.25A {Yersinia pseudotuberculosis}
Probab=23.21 E-value=25 Score=22.55 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=8.7
Q ss_pred CCCcCCCcEEEE
Q psy6097 92 TTHLVPGDIIVI 103 (167)
Q Consensus 92 ~~~lv~GDii~v 103 (167)
--+|.+||+|.+
T Consensus 37 ll~L~~GdVI~L 48 (96)
T 3uep_A 37 LTSLEPGSLIDL 48 (96)
T ss_dssp HHHCCTTCEEEE
T ss_pred HhcCCCCCEEEe
Confidence 445678888888
No 40
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=23.18 E-value=21 Score=22.79 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=9.3
Q ss_pred CCCcCCCcEEEE
Q psy6097 92 TTHLVPGDIIVI 103 (167)
Q Consensus 92 ~~~lv~GDii~v 103 (167)
--+|.+||+|.+
T Consensus 37 ll~L~~GdVI~L 48 (96)
T 1o6a_A 37 VLEMIHGSIIEL 48 (96)
T ss_dssp HHHCCTTCEEEE
T ss_pred HhCCCCCCEEEe
Confidence 456778888888
No 41
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=22.91 E-value=1.5e+02 Score=20.62 Aligned_cols=55 Identities=15% Similarity=0.255 Sum_probs=35.6
Q ss_pred CcEEEEccCCcE--EeeeEEEEe--------------e-EEE----EeCCcccCCCccccccCCCcCEEeeccEEEEE
Q psy6097 98 GDIIVIPKHGCT--LACDATLLQ--------------G-NCI----VNESMLTVHGALFIMWEDVNHTLYCGTVILQA 154 (167)
Q Consensus 98 GDii~v~~~g~~--iP~D~~vl~--------------g-~~~----Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g 154 (167)
||=+.+.+.+.. -|+||.+.. | ... +|+..|.||..-... +.|+.|-+|..+.+=
T Consensus 35 G~Giai~p~~~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~gF~~~V--~~Gd~V~~G~~L~~~ 110 (154)
T 2gpr_A 35 GDGFAINPKSNDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFV--TQDQEVNAGDKLVTV 110 (154)
T ss_dssp CEEEEEEESSSEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCSEEECC--CTTCEECTTCEEEEE
T ss_pred eCeEEEEeCCCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCceEEEE--cCCCEEcCCCEEEEE
Confidence 666655222233 599999974 1 111 277888888765544 789999999877653
No 42
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=22.75 E-value=75 Score=21.41 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=21.0
Q ss_pred HHhhhhcCCCeEEEEecCCeeEEeeCCCcCCCcEEEE
Q psy6097 67 SLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVI 103 (167)
Q Consensus 67 ~l~~~~~~~~~~~V~r~~g~~~~i~~~~lv~GDii~v 103 (167)
..+++.... .|+ -| |+.. -++..+.+||.|.+
T Consensus 26 ~a~~li~~G-~V~--VN-G~~v-k~s~~V~~GD~I~I 57 (133)
T 1dm9_A 26 LAREMIEGG-KVH--YN-GQRS-KPSKIVELNATLTL 57 (133)
T ss_dssp HHHHHHHTT-CEE--ET-TEEC-CTTCBCCTTCEEEE
T ss_pred HHHHHHHCC-cEE--EC-CEEc-CCCCEeCCCCEEEE
Confidence 344444333 343 46 7764 56778999999999
No 43
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=22.37 E-value=81 Score=18.12 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=19.1
Q ss_pred eEEEEecCCeeEEee---CCCcCCCcEEEE
Q psy6097 77 KVTVKRSKGLYEEVP---TTHLVPGDIIVI 103 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~---~~~lv~GDii~v 103 (167)
.+.|..| |+...-. ...|..||.|.+
T Consensus 31 ~v~vavN-~~~v~~~~~~~~~L~~gD~v~i 59 (66)
T 1f0z_A 31 GAALAIN-QQIVPREQWAQHIVQDGDQILL 59 (66)
T ss_dssp SEEEEET-TEEECHHHHTTCCCCTTEEECE
T ss_pred CEEEEEC-CEECCchhcCCcCCCCCCEEEE
Confidence 5778888 7654432 467999999988
No 44
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=22.36 E-value=38 Score=20.46 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=17.6
Q ss_pred eEEEEecCCeeEEeeCCCcCCCcEEEE
Q psy6097 77 KVTVKRSKGLYEEVPTTHLVPGDIIVI 103 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~~~~lv~GDii~v 103 (167)
.+.|.+| |. .++.+++..||.|.+
T Consensus 36 ~VvV~vN-G~--~v~~d~~l~GD~VeI 59 (74)
T 2l32_A 36 EVTVLVD-GR--PVPEDQSVEVDRVKV 59 (74)
T ss_dssp CCCEECC-CC--CCCTTSSSCCCCEEE
T ss_pred eEEEEEC-CE--ECCHHHCCCCCEEEE
Confidence 5667788 64 566677777988887
No 45
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=21.82 E-value=68 Score=19.74 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=16.2
Q ss_pred EEecCCeeEEeeCCCcCCCcEEEE
Q psy6097 80 VKRSKGLYEEVPTTHLVPGDIIVI 103 (167)
Q Consensus 80 V~r~~g~~~~i~~~~lv~GDii~v 103 (167)
|.-| |+.. -++..+.+||.|.+
T Consensus 28 V~VN-g~~~-~~~~~v~~gd~I~v 49 (92)
T 2k6p_A 28 VWLN-GSCA-KASKEVKAGDTISL 49 (92)
T ss_dssp CEET-TEEC-CTTCBCCTTCEEEE
T ss_pred EEEC-CEEc-CCCCCcCCCCEEEE
Confidence 3446 7654 46778999999999
No 46
>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion related Pro cell WALL, NLPC-like module, hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 3i86_A
Probab=21.78 E-value=34 Score=25.30 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=15.5
Q ss_pred EEeeCCCcCCCcEEEEccCC
Q psy6097 88 EEVPTTHLVPGDIIVIPKHG 107 (167)
Q Consensus 88 ~~i~~~~lv~GDii~v~~~g 107 (167)
..++.++++|||+|.. ..+
T Consensus 152 ~~V~~~~lqpGDLVff-~~g 170 (214)
T 3pbi_A 152 RHVPPAEAKRGDLIFY-GPG 170 (214)
T ss_dssp EEECGGGCCTTCEEEE-SGG
T ss_pred eeechhhCCCCCEEEe-cCC
Confidence 5677889999999998 544
No 47
>3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 3pbc_A 3s0q_A 2xiv_A*
Probab=21.74 E-value=37 Score=25.16 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=15.4
Q ss_pred EEeeCCCcCCCcEEEEccCC
Q psy6097 88 EEVPTTHLVPGDIIVIPKHG 107 (167)
Q Consensus 88 ~~i~~~~lv~GDii~v~~~g 107 (167)
..++.++++|||+|.. ..+
T Consensus 152 ~~V~~~~lqpGDLvFf-~~g 170 (214)
T 3ne0_A 152 RKIPSSQMRRGDVIFY-GPN 170 (214)
T ss_dssp EEEEGGGCCTTCEEEE-SGG
T ss_pred ceechhhCCCCCEEEe-cCC
Confidence 4567789999999999 654
No 48
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=21.20 E-value=79 Score=20.67 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=16.3
Q ss_pred CCeeEEe-eCCCcCCCcEEEE
Q psy6097 84 KGLYEEV-PTTHLVPGDIIVI 103 (167)
Q Consensus 84 ~g~~~~i-~~~~lv~GDii~v 103 (167)
+|+|... ....|++||+|.-
T Consensus 56 ~GrW~~~d~~~~lk~GD~I~Y 76 (107)
T 3ie4_A 56 NGRWTFRDRITALKPGDTLYY 76 (107)
T ss_dssp TTEEEEEESSCCCCTTCEEEE
T ss_pred CCEEEEECCCceeCCCCEEEE
Confidence 3888877 5789999998875
No 49
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=20.39 E-value=93 Score=20.25 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=16.4
Q ss_pred CCeeEEee-CCCcCCCcEEEE
Q psy6097 84 KGLYEEVP-TTHLVPGDIIVI 103 (167)
Q Consensus 84 ~g~~~~i~-~~~lv~GDii~v 103 (167)
+|+|.... ...|++||+|..
T Consensus 57 ~GrW~~~d~~~~lk~GD~i~Y 77 (106)
T 3aqy_A 57 EGRWTFRDRNVKLKLGDKIYF 77 (106)
T ss_dssp TTEEEEEECSCCCCTTCEEEE
T ss_pred CCEEEEECCceEeCCCCEEEE
Confidence 38888666 669999999987
No 50
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.36 E-value=44 Score=19.19 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=18.9
Q ss_pred CCcCCCcEEEEccCCcEEeeeEEEE
Q psy6097 93 THLVPGDIIVIPKHGCTLACDATLL 117 (167)
Q Consensus 93 ~~lv~GDii~v~~~g~~iP~D~~vl 117 (167)
.+..|||.|.+ ..|..-=..|.+.
T Consensus 6 ~~f~~GD~V~V-~~Gpf~g~~G~V~ 29 (59)
T 2e6z_A 6 SGFQPGDNVEV-CEGELINLQGKIL 29 (59)
T ss_dssp SSCCTTSEEEE-CSSTTTTCEEEEC
T ss_pred ccCCCCCEEEE-eecCCCCCEEEEE
Confidence 46789999999 8887766666665
No 51
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=20.33 E-value=71 Score=19.09 Aligned_cols=26 Identities=23% Similarity=0.079 Sum_probs=19.2
Q ss_pred eEEEEecCCeeEEee---CCCcCCCcEEEE
Q psy6097 77 KVTVKRSKGLYEEVP---TTHLVPGDIIVI 103 (167)
Q Consensus 77 ~~~V~r~~g~~~~i~---~~~lv~GDii~v 103 (167)
.+.|-.| |....-. ...|..||.|.+
T Consensus 30 ~vAV~vN-g~iVpr~~~~~~~L~dGD~veI 58 (73)
T 2kl0_A 30 HFAVALN-YDVVPRGKWDETPVTAGDEIEI 58 (73)
T ss_dssp SCEEEES-SSEECHHHHTTCBCCTTCEEEE
T ss_pred cEEEEEC-CEECChHHcCcccCCCCCEEEE
Confidence 5668888 7654433 467999999998
No 52
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=20.04 E-value=43 Score=24.00 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=11.6
Q ss_pred CcCCCcEEEEccCCcE
Q psy6097 94 HLVPGDIIVIPKHGCT 109 (167)
Q Consensus 94 ~lv~GDii~v~~~g~~ 109 (167)
.|.|||++.| ++|-.
T Consensus 204 ~l~pGD~Lyi-P~gW~ 218 (235)
T 4gjz_A 204 ILSPGEILFI-PVKYW 218 (235)
T ss_dssp EECTTCEEEE-CTTCE
T ss_pred EECCCCEEEe-CCCCc
Confidence 4789999999 67754
Done!