RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6097
(167 letters)
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 55.4 bits (134), Expect = 8e-10
Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 11/136 (8%)
Query: 1 YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSV 60
YG N++ +N F+ + P + + G I + + V
Sbjct: 100 YGLNQMKEEKENHFLKFLGFFVGPIQFVMEGAAVLAAGLEDWVDFGVICGLLLLNAVVGF 159
Query: 61 IQTRQ-----KSLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDAT 115
+Q Q L T+ K V R G +E+ +VPGDI+ + + G + D
Sbjct: 160 VQEFQAGSIVDELKKTLAL--KAVVLRD-GTLKEIEAPEVVPGDILQV-EEGTIIPADGR 215
Query: 116 LLQGNCI--VNESMLT 129
++ + V++S LT
Sbjct: 216 IVTDDAFLQVDQSALT 231
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 55.4 bits (134), Expect = 9e-10
Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 17/142 (11%)
Query: 1 YGKNEINVPIQNISSLFVLEALNPFY-------IFQVFTLCVWFAEAYYYYTGAIICMSV 53
+G N++ ++ F+ NP I + + IIC+ V
Sbjct: 45 FGPNKLEEKKESKLLKFLGFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLV 104
Query: 54 FGIVSSVIQTRQ-----KSLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGC 108
S I+ +L + K V R G + E LVPGDI+ I K G
Sbjct: 105 INSTISFIEENNAGNAAAALMAGLAP--KTKVLR-DGKWSEQEAAILVPGDIVSI-KLGD 160
Query: 109 TLACDATLLQGNCI-VNESMLT 129
+ DA LL+G+ + V++S LT
Sbjct: 161 IIPADARLLEGDPLKVDQSALT 182
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 44.2 bits (105), Expect = 6e-06
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 77 KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQG-NCIVNESMLT 129
+ V R G + +V GD++ + K G + D ++ C V+ S LT
Sbjct: 173 QALVIRD-GEKSTINAEFVVAGDLVEV-KGGDRIPADLRIISAHGCKVDNSSLT 224
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB,
actuator, transport protein; 1.65A {Archaeoglobus
fulgidus} PDB: 2voy_F
Length = 113
Score = 41.7 bits (99), Expect = 1e-05
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 85 GLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLT 129
G VP + GDI+++ + G + D +++G V+ESM++
Sbjct: 20 GKEIAVPVEEVAVGDIVIV-RPGEKIPVDGVVVEGESYVDESMIS 63
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 43.4 bits (103), Expect = 1e-05
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 77 KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQG-NCIVNESMLT 129
+ TV R G ++ LV GD++ + K G + D +LQ V+ S LT
Sbjct: 178 QATVIRD-GDKFQINADQLVVGDLVEM-KGGDRVPADIRILQAQGRKVDNSSLT 229
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 41.4 bits (98), Expect = 6e-05
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 76 DKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLT 129
V R G VP + GDI+++ + G + D +++G V+ESM++
Sbjct: 211 KTAVVIRD-GKEIAVPVEEVAVGDIVIV-RPGEKIPVDGVVVEGESYVDESMIS 262
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 40.6 bits (96), Expect = 1e-04
Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 23/117 (19%)
Query: 26 YIFQVFTLCVWFAEAYYYYTGA--IICMSVFGIVSSVIQTRQKSLHDTVNTVD------- 76
++ V + Y +Y + ++ + G ++ R KS T +
Sbjct: 78 FLASVLSTAGVLPREYSFYETSVLLLAFLLLG---RTLEARAKS-----RTGEAIKKLVG 129
Query: 77 ----KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLT 129
V R G VP + GDI+++ + G + D +++G V+ESM++
Sbjct: 130 LQAKTAVVIRD-GKEIAVPVEEVAVGDIVIV-RPGEKIPVDGVVVEGESYVDESMIS 184
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 2e-04
Identities = 19/117 (16%), Positives = 31/117 (26%), Gaps = 35/117 (29%)
Query: 11 QNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQKSLHD 70
+ + FV E L Y + + I+ R + L++
Sbjct: 76 EEMVQKFVEEVLRINY--------KFLMSPI-----KTEQRQPSMMTRMYIEQRDR-LYN 121
Query: 71 TVNTVDKVTVKRSK-------GLYEEVPTTHLVPGDIIVIPKH---GC---TLACDA 114
K V R + L E L P ++I G +A D
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLE------LRPAKNVLI--DGVLGSGKTWVALDV 170
Score = 27.9 bits (61), Expect = 2.1
Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 22/91 (24%)
Query: 9 PIQNISSLFVLEALNPFYIFQVFTLC------VWFAEAYYYYTGAIICMSVFGIVSSV-I 61
I S+ L + + C V A+ + F + + +
Sbjct: 223 IKLRIHSI--QAELRRLLKSKPYENCLLVLLNVQNAK----------AWNAFNLSCKILL 270
Query: 62 QTRQKSLHDTVN---TVDKVTVKRSKGLYEE 89
TR K + D ++ T S L +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Score = 27.5 bits (60), Expect = 2.7
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 33/92 (35%)
Query: 1 YGKNEINVPIQNISSLFVLEALNP------FYIFQVF---------TLCV-WFAEAYYYY 44
+++ I+ SSL L P F VF L + WF
Sbjct: 350 VNCDKLTTIIE--SSL---NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS-- 402
Query: 45 TGAIICMSVFG--IVSSVIQTRQK----SLHD 70
M V S+++ + K S+
Sbjct: 403 ----DVMVVVNKLHKYSLVEKQPKESTISIPS 430
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative
splicing, ATP-binding, cell membrane, cytoplasm, disease
mutation; NMR {Homo sapiens}
Length = 124
Score = 38.3 bits (90), Expect = 2e-04
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 88 EEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLT 129
E+V + GDII + G D +++G+ +V+ES++T
Sbjct: 35 EQVDVELVQRGDIIKV-VPGGKFPVDGRVIEGHSMVDESLIT 75
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 39.1 bits (92), Expect = 4e-04
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 85 GLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLT 129
G EEV ++ GD++ + + G + D + +G V+ESM+T
Sbjct: 234 GSEEEVSLDNVAVGDLLRV-RPGEKIPVDGEVQEGRSFVDESMVT 277
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 38.4 bits (90), Expect = 5e-04
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 77 KVTVKRS-KGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCI---VNESMLT 129
V R+ + + + +VPGDI+ + G + D +L V++S+LT
Sbjct: 127 MGKVYRADRKSVQRIKARDIVPGDIVEV-AVGDKVPADIRILSIKSTTLRVDQSILT 182
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.22
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 18/44 (40%)
Query: 76 DKVTVKRSKG---LYEEVPTTHLVPGDIIVIPKHGCTLACDATL 116
+K +K+ + LY + P LA AT+
Sbjct: 18 EKQALKKLQASLKLYA--DDS--APA-----------LAIKATM 46
>3a2z_A Bifunctional glutathionylspermidine synthetase/AM; GSP amidase,
ATP-binding, hydrolase, ligase, multifunctional
nucleotide-binding; 1.50A {Escherichia coli} PDB: 3a30_A
3a2y_A*
Length = 197
Score = 25.7 bits (56), Expect = 7.2
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 8/74 (10%)
Query: 34 CVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQKSLHDTVNTVDKVTVKRSKGLYEEVPTT 93
CV FA + + + VF V + V + + ++ P
Sbjct: 59 CVEFARRFLFLNYGV----VFTDVGMAWEIFSLRFLREVVNDNILPLQAFPNGSPRAP-- 112
Query: 94 HLVPGDIIVIPKHG 107
V G +++ K G
Sbjct: 113 --VAGALLIWDKGG 124
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 25.6 bits (56), Expect = 9.5
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 77 KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDAT 115
K+TV R L P + P +V T+ C A+
Sbjct: 95 KLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAAS 133
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.443
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,583,799
Number of extensions: 139634
Number of successful extensions: 402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 20
Length of query: 167
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,272,666
Effective search space: 341813280
Effective search space used: 341813280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.4 bits)