RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6097
         (167 letters)



>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A
           {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 115

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 76  DKVTVKRS-KGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQG---NCIVNESMLTVH 131
           +   V R+ +   + +    +VPGDI+ +   G  +  D  +L        V++S+LT  
Sbjct: 1   EMGKVYRADRKSVQRIKARDIVPGDIVEV-AVGDKVPADIRILSIKSTTLRVDQSILTGE 59

Query: 132 GALFIMWEDVNH 143
               I   +   
Sbjct: 60  SVSVIKHTEPVP 71


>d2io8a2 d.3.1.15 (A:10-200) Glutathionylspermidine synthase,
           amidase domain {Escherichia coli [TaxId: 562]}
          Length = 191

 Score = 26.4 bits (58), Expect = 1.5
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 8/74 (10%)

Query: 34  CVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQKSLHDTVNTVDKVTVKRSKGLYEEVPTT 93
           CV FA  + +    +    VF  V    +         V   + + ++     +      
Sbjct: 50  CVEFARRFLFLNYGV----VFTDVGMAWEIFSLRFLREVVNDNILPLQA----FPNGSPR 101

Query: 94  HLVPGDIIVIPKHG 107
             V G +++  K G
Sbjct: 102 APVAGALLIWDKGG 115


>d2bcoa1 c.56.5.7 (A:4-342) Succinylglutamate desuccinylase AstE
           {Vibrio parahaemolyticus [TaxId: 670]}
          Length = 339

 Score = 26.1 bits (57), Expect = 2.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 149 TVILQARYHGDEYLPWELV 167
            +I+    HGDE  P ELV
Sbjct: 52  NIIISCGIHGDETAPMELV 70


>d1yw4a1 c.56.5.7 (A:2-332) Succinylglutamate desuccinylase AstE
           {Chromobacterium violaceum [TaxId: 536]}
          Length = 331

 Score = 25.8 bits (56), Expect = 3.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 149 TVILQARYHGDEYLPWELV 167
           +V+L    HG+E  P E+V
Sbjct: 47  SVLLSCGVHGNETAPIEVV 65


>d2g9da1 c.56.5.7 (A:3-342) Succinylglutamate desuccinylase AstE
           {Vibrio cholerae [TaxId: 666]}
          Length = 340

 Score = 25.4 bits (55), Expect = 3.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 149 TVILQARYHGDEYLPWELV 167
            +++    HGDE  P EL+
Sbjct: 53  NMVISCGIHGDETAPMELL 71


>d1yw6a1 c.56.5.7 (A:1-322) Succinylglutamate desuccinylase AstE
           {Escherichia coli [TaxId: 562]}
          Length = 322

 Score = 25.0 bits (54), Expect = 4.7
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query: 149 TVILQARYHGDEYLPWELV 167
            +++ A  HG+E  P E++
Sbjct: 45  ALVISAGIHGNETAPVEML 63


>d1g3nc2 a.74.1.1 (C:148-253) Viral cyclin {Kaposi's
           sarcoma-associated herpesvirus [TaxId: 37296]}
          Length = 106

 Score = 23.9 bits (51), Expect = 6.9
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 14/65 (21%)

Query: 69  HDTVNT------VDKVTVKRSKGLYEEVPTTHLVPGDII--------VIPKHGCTLACDA 114
           H  VNT      VD +T      +        LVP ++I        V+P+    L CD 
Sbjct: 26  HHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDV 85

Query: 115 TLLQG 119
           ++LQ 
Sbjct: 86  SVLQA 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.140    0.443 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 644,817
Number of extensions: 26776
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 10
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.0 bits)