BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6098
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 340 bits (872), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 177/298 (59%), Positives = 201/298 (67%), Gaps = 29/298 (9%)
Query: 81 GFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVK 140
G KPY+ KI+E +L + K +N+RRL+AQRN LN KVR ++ GSYVGEV+K
Sbjct: 18 GIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIK 77
Query: 141 PMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLM 200
+ KKVLVKV PEGK+ + RV LR++SY LHK+L NK DPLVSLM
Sbjct: 78 IVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLM 137
Query: 201 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 260
MVEKVPDSTY+MVGGL QIKEIKEVIELPVKHPELF++LGIAQPKGV+LYGPPGTGKTL
Sbjct: 138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTL 197
Query: 261 LARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTI 320
LARAVAHHT+C FIRVSG+ELVQK+IGEGSRMVRELFVMA
Sbjct: 198 LARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMA-------------------- 237
Query: 321 LTNTIVCNFREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATK 378
REHAPSIIFM VQRTMLELLNQLDGFE +K
Sbjct: 238 ---------REHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/46 (89%), Positives = 45/46 (97%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GKTLLARAVAHHT+C FIRVSG+ELVQK+IGEGSRMVRELFVMAR
Sbjct: 193 TGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAR 238
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 125/204 (61%), Gaps = 29/204 (14%)
Query: 172 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 231
P C V L +++ ++ +L + DP+VS+M ++K P +Y +GGL++QI+EIKE +ELP+
Sbjct: 143 PGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPL 202
Query: 232 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 291
HPEL++ +GI PKGV+LYG PGTGKTLLA+AVA+ T TF+R+ GSEL+QK++G+G R
Sbjct: 203 THPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPR 262
Query: 292 MVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMXXXXXXXXXXXX 351
+ R++F +A E+APSI+F+
Sbjct: 263 LCRQIFKVAG-----------------------------ENAPSIVFIDEIDAIGTKRYD 293
Query: 352 XXXXXXXXVQRTMLELLNQLDGFE 375
+QRTMLELLNQLDGF+
Sbjct: 294 SNSGGEREIQRTMLELLNQLDGFD 317
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 38/45 (84%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMA 56
+GKTLLA+AVA+ T TF+R+ GSEL+QK++G+G R+ R++F +A
Sbjct: 227 TGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVA 271
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/201 (47%), Positives = 117/201 (58%), Gaps = 29/201 (14%)
Query: 175 RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHP 234
RV + Y + LP ++DP V++M VE+ PD TY VGG +QI++++EV+ELP+ P
Sbjct: 173 RVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSP 232
Query: 235 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVR 294
E F LGI PKG+LLYGPPGTGKTL ARAVA+ T+ TFIRV GSELVQK++GEG+RMVR
Sbjct: 233 ERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVR 292
Query: 295 ELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMXXXXXXXXXXXXXXX 354
ELF MA KK C IIF
Sbjct: 293 ELFEMARTKK---------------------AC--------IIFFDEIDAVGGARFDDGA 323
Query: 355 XXXXXVQRTMLELLNQLDGFE 375
VQRTMLEL+ QLDGF+
Sbjct: 324 GGDNEVQRTMLELITQLDGFD 344
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/48 (75%), Positives = 42/48 (87%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCK 59
+GKTL ARAVA+ T+ TFIRV GSELVQK++GEG+RMVRELF MAR K
Sbjct: 254 TGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTK 301
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 128/243 (52%), Gaps = 29/243 (11%)
Query: 135 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 194
+G+ ++P+D+ +V + P+ VAL S L ILP D
Sbjct: 96 IGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSD 155
Query: 195 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 254
+S+M + PD TY VGGLD Q +EI+E +ELP+ +L++ +GI P+GVLLYGPP
Sbjct: 156 SSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPP 215
Query: 255 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLF 314
GTGKT+L +AVA+ T+ FIRV+GSE V K++GEG RMVR++F +A
Sbjct: 216 GTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLA-------------- 261
Query: 315 WSLLTILTNTIVCNFREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGF 374
RE+APSIIF+ VQR ++ELL Q+DGF
Sbjct: 262 ---------------RENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306
Query: 375 EAT 377
+ +
Sbjct: 307 DQS 309
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 39/51 (76%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSS 62
+GKT+L +AVA+ T+ FIRV+GSE V K++GEG RMVR++F +AR S
Sbjct: 217 TGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPS 267
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 160 bits (406), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 141/277 (50%), Gaps = 36/277 (12%)
Query: 99 EKEQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFX 158
++ QN+R L+ ++ ++ L+ G +GEV+K + ++K +VK ++
Sbjct: 76 QRRQNIRDLEKLYDKTENDIKALQSI-------GQLIGEVMKELSEEKYIVKASSGPRYI 128
Query: 159 XXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 218
RV L + T+ +ILP + DPLV M + + T++ +GGL
Sbjct: 129 VGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTE 188
Query: 219 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 278
QI+E++EVIELP+K+PE+F +GI PKGVLLYGPPGTGKTLLA+AVA FI
Sbjct: 189 QIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPA 248
Query: 279 SELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIF 338
S +V K+IGE +R++RE+F A +EH P IIF
Sbjct: 249 SGIVDKYIGESARIIREMFAYA-----------------------------KEHEPCIIF 279
Query: 339 MXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFE 375
M +QRT++ELL Q+DGF+
Sbjct: 280 MDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GKTLLA+AVA FI S +V K+IGE +R++RE+F A+
Sbjct: 226 TGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAK 271
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 157 bits (398), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 112/205 (54%), Gaps = 29/205 (14%)
Query: 172 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPV 231
PN V + +SY + LP++ D V M V++ P TY VGGLD QI+E+ E I LP+
Sbjct: 142 PNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPM 201
Query: 232 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 291
K + F +GI PKG L+YGPPGTGKTLLARA A T TF++++ +LVQ +IGEG++
Sbjct: 202 KRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAK 261
Query: 292 MVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMXXXXXXXXXXXX 351
+VR+ F +A +E AP+IIF+
Sbjct: 262 LVRDAFALA-----------------------------KEKAPTIIFIDELDAIGTKRFD 292
Query: 352 XXXXXXXXVQRTMLELLNQLDGFEA 376
VQRTMLELLNQLDGF +
Sbjct: 293 SEKSGDREVQRTMLELLNQLDGFSS 317
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 37/49 (75%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKG 60
+GKTLLARA A T TF++++ +LVQ +IGEG+++VR+ F +A+ K
Sbjct: 226 TGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKA 274
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 157 bits (397), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 110/177 (62%), Gaps = 29/177 (16%)
Query: 200 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 259
M V++ P+ YE +GGL+ Q++EI+EV+ELP+KHPELF+ +GI PKG+LLYGPPGTGKT
Sbjct: 6 MEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKT 65
Query: 260 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLT 319
LLA+AVA T TFIRV GSELV+KFIGEG+ +V+++F +A
Sbjct: 66 LLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLA------------------- 106
Query: 320 ILTNTIVCNFREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEA 376
+E APSIIF+ VQRT+++LL ++DGF+A
Sbjct: 107 ----------KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 41/51 (80%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSS 62
+GKTLLA+AVA T TFIRV GSELV+KFIGEG+ +V+++F +A+ K S
Sbjct: 62 TGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPS 112
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 64/88 (72%)
Query: 210 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 269
Y+ VGG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 270 ECTFIRVSGSELVQKFIGEGSRMVRELF 297
F ++G E++ K GE +R+ F
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAF 290
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 29/177 (16%)
Query: 202 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 261
V +VP T+E +GGL++ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 262 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTIL 321
A+A+A+ + FI + G EL+ + GE VRE+F A
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA--------------------- 566
Query: 322 TNTIVCNFREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATK 378
R+ AP ++F R + ++L ++DG K
Sbjct: 567 --------RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 13 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
GKTLLA+A+A+ + FI + G EL+ + GE VRE+F AR
Sbjct: 523 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 567
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELF 53
+GKTL+ARAVA+ T F ++G E++ K GE +R+ F
Sbjct: 249 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAF 290
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 67/95 (70%)
Query: 203 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 262
E + + Y+ VGG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 263 RAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELF 297
RAVA+ T F ++G E++ K GE +R+ F
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAF 290
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELF 53
+GKTL+ARAVA+ T F ++G E++ K GE +R+ F
Sbjct: 249 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAF 290
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 64/88 (72%)
Query: 210 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 269
Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 270 ECTFIRVSGSELVQKFIGEGSRMVRELF 297
F ++G E++ K GE +R+ F
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAF 290
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 29/177 (16%)
Query: 202 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 261
V +VP T+E +GGL++ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 262 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTIL 321
A+A+A+ + FI + G EL+ + GE VRE+F A
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA--------------------- 566
Query: 322 TNTIVCNFREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATK 378
R+ AP ++F R + ++L ++DG K
Sbjct: 567 --------RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 13 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
GKTLLA+A+A+ + FI + G EL+ + GE VRE+F AR
Sbjct: 523 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 567
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELF 53
+GKTL+ARAVA+ T F ++G E++ K GE +R+ F
Sbjct: 249 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAF 290
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 64/88 (72%)
Query: 210 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 269
Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 270 ECTFIRVSGSELVQKFIGEGSRMVRELF 297
F ++G E++ K GE +R+ F
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAF 290
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELF 53
+GKTL+ARAVA+ T F ++G E++ K GE +R+ F
Sbjct: 249 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAF 290
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 64/88 (72%)
Query: 210 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 269
Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 270 ECTFIRVSGSELVQKFIGEGSRMVRELF 297
F ++G E++ K GE +R+ F
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAF 290
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELF 53
+GKTL+ARAVA+ T F ++G E++ K GE +R+ F
Sbjct: 249 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAF 290
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 64/88 (72%)
Query: 210 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 269
Y+ +GG Q+ +IKE++ELP++HP LF A+G+ P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 270 ECTFIRVSGSELVQKFIGEGSRMVRELF 297
F ++G E++ K GE +R+ F
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAF 290
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELF 53
+GKTL+ARAVA+ T F ++G E++ K GE +R+ F
Sbjct: 249 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAF 290
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 29/177 (16%)
Query: 202 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 261
V +VP T+E +GGL++ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65
Query: 262 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTIL 321
A+A+A+ + FI + G EL+ + GE VRE+F A
Sbjct: 66 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA--------------------- 104
Query: 322 TNTIVCNFREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATK 378
R+ AP ++F R + ++L ++DG K
Sbjct: 105 --------RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 13 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
GKTLLA+A+A+ + FI + G EL+ + GE VRE+F AR
Sbjct: 61 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 105
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 85/168 (50%), Gaps = 30/168 (17%)
Query: 209 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 268
T++ VGG + I+E+KEV+E +K P F+ +G PKG+LL GPPGTGKTLLARAVA
Sbjct: 14 TFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72
Query: 269 TECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCN 328
F +SGS+ V+ F+G G+ VR+LF A
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQA---------------------------- 104
Query: 329 FREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEA 376
+ HAP I+F+ ++T+ +LL ++DGF++
Sbjct: 105 -KAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARC 58
+GKTLLARAVA F +SGS+ V+ F+G G+ VR+LF A+
Sbjct: 60 TGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKA 106
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 84/168 (50%), Gaps = 30/168 (17%)
Query: 209 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 268
T++ VGG + I+E+KEV+E +K P F+ +G PKG+LL GPPGTG TLLARAVA
Sbjct: 14 TFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGE 72
Query: 269 TECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCN 328
F +SGS+ V+ F+G G+ VR+LF A
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQA---------------------------- 104
Query: 329 FREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEA 376
+ HAP I+F+ ++T+ +LL ++DGF++
Sbjct: 105 -KAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARC 58
+G TLLARAVA F +SGS+ V+ F+G G+ VR+LF A+
Sbjct: 60 TGATLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKA 106
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 80/133 (60%), Gaps = 10/133 (7%)
Query: 193 VDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLY 251
+DP +++ + P+ +E V GL+ + +KE + LPVK P LF G +P G+LLY
Sbjct: 2 IDPFTAIL--SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLY 57
Query: 252 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHP 311
GPPGTGK+ LA+AVA TF VS S+LV K++GE ++V++LF MA K +
Sbjct: 58 GPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS----- 112
Query: 312 LLFWSLLTILTNT 324
++F + LT T
Sbjct: 113 IIFIDQVDALTGT 125
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GK+ LA+AVA TF VS S+LV K++GE ++V++LF MAR
Sbjct: 62 TGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAR 107
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 79/130 (60%), Gaps = 9/130 (6%)
Query: 196 LVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPP 254
L S ++ EK P+ +E V GL+ + +KE + LPVK P LF G +P G+LLYGPP
Sbjct: 37 LSSAILSEK-PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPP 93
Query: 255 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLF 314
GTGK+ LA+AVA TF VS S+LV K++GE ++V++LF MA K + ++F
Sbjct: 94 GTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS-----IIF 148
Query: 315 WSLLTILTNT 324
+ LT T
Sbjct: 149 IDQVDALTGT 158
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GK+ LA+AVA TF VS S+LV K++GE ++V++LF MAR
Sbjct: 95 TGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAR 140
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 79/130 (60%), Gaps = 9/130 (6%)
Query: 196 LVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPP 254
L S ++ EK P+ +E V GL+ + +KE + LPVK P LF G +P G+LLYGPP
Sbjct: 22 LSSAILSEK-PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPP 78
Query: 255 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLF 314
GTGK+ LA+AVA TF VS S+LV K++GE ++V++LF MA K + ++F
Sbjct: 79 GTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS-----IIF 133
Query: 315 WSLLTILTNT 324
+ LT T
Sbjct: 134 IDQVDALTGT 143
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GK+ LA+AVA TF VS S+LV K++GE ++V++LF MAR
Sbjct: 80 TGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAR 125
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 64/96 (66%)
Query: 205 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 264
VP+ T+ +G L++ +E+ I PV++P+ F ALG+ P GVLL GPPG GKTLLA+A
Sbjct: 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKA 63
Query: 265 VAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMA 300
VA+ + FI V G EL+ ++GE R VR++F A
Sbjct: 64 VANESGLNFISVKGPELLNMYVGESERAVRQVFQRA 99
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 13 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFF 68
GKTLLA+AVA+ + FI V G EL+ ++GE R VR++F R K S+ FF
Sbjct: 56 GKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVF--QRAKNSAPCVIFF 109
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 77/130 (59%), Gaps = 8/130 (6%)
Query: 196 LVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPP 254
LV + + P+ +E V GL+ + +KE + LPVK P LF G +P G+LLYGPP
Sbjct: 12 LVPRGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPP 69
Query: 255 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLF 314
GTGK+ LA+AVA TF VS S+LV K++GE ++V++LF MA K + ++F
Sbjct: 70 GTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS-----IIF 124
Query: 315 WSLLTILTNT 324
+ LT T
Sbjct: 125 IDEVDALTGT 134
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GK+ LA+AVA TF VS S+LV K++GE ++V++LF MAR
Sbjct: 71 TGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAR 116
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 69/108 (63%), Gaps = 4/108 (3%)
Query: 196 LVSLMMVEKVPDST---YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYG 252
L +L+M E V + T ++ + G D + ++E++ LP PELF L A +G+LL+G
Sbjct: 97 LANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGL-RAPARGLLLFG 155
Query: 253 PPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMA 300
PPG GKT+LA+AVA + TF +S + L K++GEG ++VR LF +A
Sbjct: 156 PPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVA 203
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GKT+LA+AVA + TF +S + L K++GEG ++VR LF +AR
Sbjct: 159 NGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR 204
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 70/114 (61%), Gaps = 4/114 (3%)
Query: 196 LVSLMMVEKV---PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYG 252
++ L+M E + P +E + G++ IKE++ P+ P++F L PKG+LL+G
Sbjct: 66 MIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFG 124
Query: 253 PPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLA 306
PPGTGKTL+ + +A + TF +S S L K++GEG +MVR LF +A ++ A
Sbjct: 125 PPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPA 178
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCK 59
+GKTL+ + +A + TF +S S L K++GEG +MVR LF +ARC+
Sbjct: 128 TGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQ 175
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 30/179 (16%)
Query: 200 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 259
M+ E +T+ V G D +E+ E++E ++ P F LG PKGVL+ GPPGTGKT
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKT 59
Query: 260 LLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLT 319
LLA+A+A + F +SGS+ V+ F+G G+ VR++F A
Sbjct: 60 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA------------------- 100
Query: 320 ILTNTIVCNFREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFEATK 378
++ AP IIF+ ++T+ ++L ++DGFE +
Sbjct: 101 ----------KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GKTLLA+A+A + F +SGS+ V+ F+G G+ VR++F A+
Sbjct: 56 TGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAK 101
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 66/108 (61%), Gaps = 4/108 (3%)
Query: 196 LVSLMMVEKVPDST---YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYG 252
LV L++ E V + + G D + ++E++ LP PELF L A KG+LL+G
Sbjct: 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFG 61
Query: 253 PPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMA 300
PPG GKTLLARAVA TF+ +S + L K++G+G ++VR LF +A
Sbjct: 62 PPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVA 109
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GKTLLARAVA TF+ +S + L K++G+G ++VR LF +AR
Sbjct: 65 NGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR 110
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 87/181 (48%), Gaps = 32/181 (17%)
Query: 195 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 254
PL S++ + P T++ V G + +E+KE++E +K+P F +G PKGVLL GPP
Sbjct: 2 PLGSVLT--EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPP 58
Query: 255 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLF 314
G GKT LARAVA FI SGS+ V+ F+G G+ VR+LF A
Sbjct: 59 GVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA-------------- 104
Query: 315 WSLLTILTNTIVCNFREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGF 374
+ HAP I+F+ ++T+ +LL ++DGF
Sbjct: 105 ---------------KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 149
Query: 375 E 375
E
Sbjct: 150 E 150
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 13 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
GKT LARAVA FI SGS+ V+ F+G G+ VR+LF A+
Sbjct: 61 GKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK 105
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 82/172 (47%), Gaps = 30/172 (17%)
Query: 204 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 263
+ P T++ V G + +E+KE++E +K+P F +G PKGVLL GPPG GKT LAR
Sbjct: 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91
Query: 264 AVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTN 323
AVA FI SGS+ V+ F+G G+ VR+LF A
Sbjct: 92 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA----------------------- 128
Query: 324 TIVCNFREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFE 375
+ HAP I+F+ ++T+ +LL ++DGFE
Sbjct: 129 ------KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 13 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
GKT LARAVA FI SGS+ V+ F+G G+ VR+LF A+
Sbjct: 85 GKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK 129
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 82/172 (47%), Gaps = 30/172 (17%)
Query: 204 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 263
+ P T++ V G + +E+KE++E +K+P F +G PKGVLL GPPG GKT LAR
Sbjct: 24 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 82
Query: 264 AVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTN 323
AVA FI SGS+ V+ F+G G+ VR+LF A
Sbjct: 83 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA----------------------- 119
Query: 324 TIVCNFREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFE 375
+ HAP I+F+ ++T+ +LL ++DGFE
Sbjct: 120 ------KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 13 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
GKT LARAVA FI SGS+ V+ F+G G+ VR+LF A+
Sbjct: 76 GKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK 120
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 82/172 (47%), Gaps = 30/172 (17%)
Query: 204 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 263
+ P T++ V G + +E+KE++E +K+P F +G PKGVLL GPPG GKT LAR
Sbjct: 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91
Query: 264 AVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTN 323
AVA FI SGS+ V+ F+G G+ VR+LF A
Sbjct: 92 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA----------------------- 128
Query: 324 TIVCNFREHAPSIIFMXXXXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGFE 375
+ HAP I+F+ ++T+ +LL ++DGFE
Sbjct: 129 ------KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 13 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
GKT LARAVA FI SGS+ V+ F+G G+ VR+LF A+
Sbjct: 85 GKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK 129
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 69/111 (62%), Gaps = 5/111 (4%)
Query: 196 LVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPP 254
L +++E+ P+ + V GL+ + +KE + LP+K P LF G P +G+LL+GPP
Sbjct: 120 LQGAIVIER-PNVKWSDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLFGPP 176
Query: 255 GTGKTLLARAVA-HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKK 304
GTGK+ LA+AVA TF +S S+LV K++GE ++V+ LF +A K
Sbjct: 177 GTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 12 SGKTLLARAVA-HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GK+ LA+AVA TF +S S+LV K++GE ++V+ LF +AR
Sbjct: 178 TGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAR 224
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 4/101 (3%)
Query: 206 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARA 264
P+ + V GL+ + +KE + LP+K P LF G P +G+LL+GPPGTGK+ LA+A
Sbjct: 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKA 64
Query: 265 VA-HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKK 304
VA TF +S S+LV K++GE ++V+ LF +A K
Sbjct: 65 VATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 105
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 12 SGKTLLARAVA-HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GK+ LA+AVA TF +S S+LV K++GE ++V+ LF +AR
Sbjct: 56 TGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAR 102
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 31/170 (18%)
Query: 206 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 265
P+ ++ + G + +E+ E+++ +K+PE + LG PKGVLL GPPGTGKTLLA+AV
Sbjct: 6 PNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAV 64
Query: 266 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTI 325
A F + GS ++ F+G G+ VR+LF A
Sbjct: 65 AGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETA------------------------- 99
Query: 326 VCNFREHAPSIIFMXX-XXXXXXXXXXXXXXXXXXVQRTMLELLNQLDGF 374
++ APSIIF+ ++T+ +LL ++DGF
Sbjct: 100 ----KKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF 145
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSS 62
+GKTLLA+AVA F + GS ++ F+G G+ VR+LF A+ + S
Sbjct: 55 TGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPS 105
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 209 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 268
+++ V G+ E++E ++ +K PE F LG PKG LL GPPG GKTLLA+AVA
Sbjct: 4 SFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62
Query: 269 TECTFIRVSGSELVQKFIGEGSRMVRELF 297
+ F+ ++G+E V+ G G+ VR LF
Sbjct: 63 AQVPFLAMAGAEFVEVIGGLGAARVRSLF 91
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 13 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCK 59
GKTLLA+AVA + F+ ++G+E V+ G G+ VR LF AR +
Sbjct: 51 GKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARAR 97
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 241 GIAQPK----GVLLYGPPGTGKTLLARAVAHH---TECTFIRVSGSELVQKFIGEGSRMV 293
G+ PK + GP G GKT LARA+A E + IR+ SE ++K G ++
Sbjct: 513 GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLT 572
Query: 294 ----RELFVMASLKKLAFAHHPLLFWSLLTILTN 323
R+ + + L + A HP +F LL +L +
Sbjct: 573 EKVRRKPYSVVLLDAIEKA-HPDVFNILLQVLED 605
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIG-EGSRMVREL 296
PK +L+ GP G GKT +AR +A FI+V ++ + ++G E ++R+L
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIG-EGSRMVREL 296
PK +L+ GP G GKT +AR +A FI+V ++ + ++G E ++R+L
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIG-EGSRMVREL 296
PK +L+ GP G GKT +AR +A FI+V ++ + ++G E ++R+L
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 102
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIG-EGSRMVREL 296
PK +L+ GP G GKT +AR +A FI+V ++ + ++G E ++R+L
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 109
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIG-EGSRMVRELFVMASL 302
PK +L+ GP G GKT +AR +A FI+V ++ + ++G E ++R+L A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG 109
Query: 303 KKLAFAHHPLLF 314
A + ++F
Sbjct: 110 AIDAVEQNGIVF 121
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIG-EGSRMVREL 296
PK +L GP G GKT +AR +A FI+V ++ + ++G E ++R+L
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 246 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 281
+ VLL GPPGTGKT LA A+A ++ F + GSE+
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSG 278
++L+GPPGTGKT LA +A + R+S
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA 83
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 246 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 281
+ VLL GPPGTGKT LA A+A ++ F GSE+
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEV 115
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 247 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK-FIGEGSRMVRELFVMASLKKL 305
+LL GP G+GKTL+A+ +A H + + L + ++GE + + AS +
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 133
Query: 306 AFAHHPLLF 314
A ++F
Sbjct: 134 QKAQKGIVF 142
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 223 IKEVIELPVKHPELFDALGIAQPKG----VLLYGP-PGTGKTLLARAVAHHTECTFIRVS 277
I E I LP E F ++ KG ++L+ P PGTGKT +A+A+ H + V+
Sbjct: 25 IDECI-LPAFDKETFKSI---TSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80
Query: 278 GSELVQKFI 286
GS+ F+
Sbjct: 81 GSDCKIDFV 89
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 284
+LL+GPPG GKT LA +AH +RV+ ++K
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEK 76
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 284
+LL+GPPG GKT LA +AH +RV+ ++K
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEK 76
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 284
+LL+GPPG GKT LA +AH +RV+ ++K
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEK 76
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 250 LYGPPGTGKTLLARAVAHHTECTFIRVS 277
L GPPG GKT LA+++A F+R+S
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRIS 140
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 231 VKHPELFDALGIAQPKGVLLYGPPGTGKTLL 261
+KH ++F L + +G++L GPPG+GKT++
Sbjct: 1035 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1064
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 284
VLL GPPG GKT LA +A + SG LV++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 284
VLL GPPG GKT LA +A + SG LV++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 284
VLL GPPG GKT LA +A + SG LV++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 284
VLL GPPG GKT LA +A + SG LV++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 231 VKHPELFDALGIAQPKGVLLYGPPGTGKTLL 261
+KH ++F L + +G++L GPPG+GKT++
Sbjct: 1254 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1283
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 284
VLL GPPG GKT LA +A + SG LV++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIG 287
VLL GPP +GKT LA +A + FI++ + K IG
Sbjct: 66 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIG 102
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIG 287
VLL GPP +GKT LA +A + FI++ + K IG
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIG 103
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK-FIGE 288
+LL GP G+GKTLLA +A + F + L + ++GE
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK-FIGE 288
+LL GP G+GKTLLA +A + F + L + ++GE
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 284
VLL GPPG G+T LA +A + SG LV++
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 38/127 (29%)
Query: 183 YTLHKILPNKVDPLVSLMMVEK------VPDSTYEMVGGLDNQIKEIKEVIELPVKHPEL 236
Y HK+L ++V+ ++ + K +PD + +Q+ +K V++ P+
Sbjct: 326 YIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNH-------SQVYAVKTVLQRPLS---- 374
Query: 237 FDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---------CTFIRVSGSELVQKFIG 287
L+ GPPGTGKT+ + + +H C ++ +L +K
Sbjct: 375 ------------LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422
Query: 288 EGSRMVR 294
G ++VR
Sbjct: 423 TGLKVVR 429
>pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex
pdb|2XZP|A Chain A, Upf1 Helicase
Length = 623
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 38/127 (29%)
Query: 183 YTLHKILPNKVDPLV------SLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPEL 236
Y HK+L ++V+ ++ + +PD + +Q+ +K V++ P+
Sbjct: 149 YIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNH-------SQVYAVKTVLQRPLS---- 197
Query: 237 FDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---------CTFIRVSGSELVQKFIG 287
L+ GPPGTGKT+ + + +H C ++ +L +K
Sbjct: 198 ------------LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 245
Query: 288 EGSRMVR 294
G ++VR
Sbjct: 246 TGLKVVR 252
>pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|B Chain B, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK7|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
Length = 624
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 38/127 (29%)
Query: 183 YTLHKILPNKVDPLVSLMMVEK------VPDSTYEMVGGLDNQIKEIKEVIELPVKHPEL 236
Y HK+L ++V+ ++ + K +PD + +Q+ +K V++ P+
Sbjct: 150 YIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNH-------SQVYAVKTVLQRPLS---- 198
Query: 237 FDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---------CTFIRVSGSELVQKFIG 287
L+ GPPGTGKT+ + + +H C ++ +L +K
Sbjct: 199 ------------LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246
Query: 288 EGSRMVR 294
G ++VR
Sbjct: 247 TGLKVVR 253
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 241 GIAQPKGV--LLYGPPGTGKTLLARAVA 266
+ QPKG+ L+ G PGTGKT +A +A
Sbjct: 4 SMEQPKGINILITGTPGTGKTSMAEMIA 31
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 246 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 284
+ +LYGPPG GKT A VA + + S++ K
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 246 KGVLLYGPPGTGKTLLARAVAHHT--ECTFIRVSGSEL 281
+ VL+ G PGTGKT +A +A + F ++GSE+
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 243 AQPKGVLLYGPPGTGKTLLARAVAH 267
A+ KG+ LYG G GK+ L A+AH
Sbjct: 150 AEQKGLYLYGDMGIGKSYLLAAMAH 174
>pdb|2WG6|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
Length = 109
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%)
Query: 135 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 194
VG V ++ +V+VK KF P RVAL ++ + +LP D
Sbjct: 40 VGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKD 99
Query: 195 PLVSLMMVEK 204
P+V VE+
Sbjct: 100 PMVYGFEVEE 109
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 205 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 264
+PD +++ + +++ + EV L AL +P LLYG GTGKT +AR
Sbjct: 13 LPDYVPDVLPHREAELRRLAEV---------LAPALRGEKPSNALLYGLTGTGKTAVARL 63
Query: 265 VAHHTEC 271
V E
Sbjct: 64 VLRRLEA 70
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 246 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 281
+ VL+ G PGTGKT +A A + F ++GSE+
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEI 123
>pdb|1U0J|A Chain A, Crystal Structure Of Aav2 Rep40-adp Complex
Length = 267
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 223 IKEVIELPVKHPELFDA--LGIAQPK-----GVLLYGPPGTGKTLLARAVAH 267
I +++EL P+ + LG A K + L+GP TGKT +A A+AH
Sbjct: 75 IYKILELNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126
>pdb|1S9H|A Chain A, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|B Chain B, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|C Chain C, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
Length = 268
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 223 IKEVIELPVKHPELFDA--LGIAQPK-----GVLLYGPPGTGKTLLARAVAH 267
I +++EL P+ + LG A K + L+GP TGKT +A A+AH
Sbjct: 76 IYKILELNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 127
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEG-SRMVRELFV 298
P + L GP GKT LA A+A C I V S L+ + + G ++ REL
Sbjct: 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVD-SALIYRGMDIGTAKPSRELLA 58
>pdb|2WG5|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
Length = 109
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%)
Query: 135 VGEVVKPMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNESYTLHKILPNKVD 194
VG V ++ +V+VK KF P RVAL ++ + +LP D
Sbjct: 40 VGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKD 99
Query: 195 PLVSLMMVEK 204
P+V VE+
Sbjct: 100 PMVYGFEVEE 109
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 244 QPKGVLLYGPPGTGKTLLARAVAH 267
Q + VLL G PGTGK++L +A+A
Sbjct: 59 QKRHVLLIGEPGTGKSMLGQAMAE 82
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 245 PKG----VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRM 292
P+G VLL GPPG GK +AV + ++S EL ++ I EG+++
Sbjct: 16 PRGSHMRVLLLGPPGAGKG--TQAVKLAEKLGIPQISTGELFRRNIEEGTKL 65
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 284
+ P LL G PG+GKT L A+ T+ I + Q+
Sbjct: 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ 72
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRM 292
VLL GPPG GK +AV + ++S EL ++ I EG+++
Sbjct: 3 VLLLGPPGAGKG--TQAVKLAEKLGIPQISTGELFRRNIEEGTKL 45
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 244 QPKGVLLY-GPPGTGKTLLARAVAH---HTECTFIRVSGSELVQK 284
+P G L+ GP G GKT LA+ +A TE IR+ +E ++K
Sbjct: 586 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 630
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query: 249 LLYGPPGTGKTLLARAVAHHTE---------CTFIRVSGSELVQKFIGEGSRMVR 294
L+ GPPGTGKT+ + + +H C V+ L K G ++VR
Sbjct: 379 LIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVR 433
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 244 QPKGVLLY-GPPGTGKTLLARAVA---HHTECTFIRVSGSELVQK 284
+P G L+ GP G GKT LA+ +A TE IR+ +E ++K
Sbjct: 42 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 86
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 15/70 (21%)
Query: 200 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELP-VKHPELFDALGIAQPKGVLLYGPPGTGK 258
+ VEK T + V G D I+ +K +E + H +L GPPGTGK
Sbjct: 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH--------------LLFSGPPGTGK 51
Query: 259 TLLARAVAHH 268
T A A+A
Sbjct: 52 TATAIALARD 61
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 248 VLLYGPPGTGKTLLARAVAHH 268
+L YGPPGTGKT A+A
Sbjct: 49 LLFYGPPGTGKTSTIVALARE 69
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 244 QPKGVLLY-GPPGTGKTLLARAVA---HHTECTFIRVSGSELVQK 284
+P G L+ GP G GKT LA+ +A TE IR+ +E +K
Sbjct: 45 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAXIRIDXTEYXEK 89
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 15/70 (21%)
Query: 200 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELP-VKHPELFDALGIAQPKGVLLYGPPGTGK 258
+ VEK T + V G D I+ +K +E + H +L GPPGTGK
Sbjct: 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH--------------LLFSGPPGTGK 51
Query: 259 TLLARAVAHH 268
T A A+A
Sbjct: 52 TATAIALARD 61
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 20/75 (26%)
Query: 232 KHPELFDALGIAQPKGVLLYGPPGTGKTLLA-------------RAVAHHTECTFIRV-- 276
KHP + +A+ A +G LYG PG + LLA R V TE T +
Sbjct: 73 KHPRVLEAVEEALARG-WLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRL 131
Query: 277 ----SGSELVQKFIG 287
+G +L+ KF G
Sbjct: 132 ARGYTGRDLILKFDG 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,624,102
Number of Sequences: 62578
Number of extensions: 346765
Number of successful extensions: 1115
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 954
Number of HSP's gapped (non-prelim): 155
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)