BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6098
(378 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O18413|PRS8_DROME 26S protease regulatory subunit 8 OS=Drosophila melanogaster
GN=Pros45 PE=1 SV=2
Length = 405
Score = 528 bits (1361), Expect = e-149, Method: Compositional matrix adjust.
Identities = 264/309 (85%), Positives = 271/309 (87%), Gaps = 29/309 (9%)
Query: 70 MDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQ 129
M+++ A EGF+ YY+ KIEELQL+VAEK QNLRRLQAQRNELNAKVRMLREELQLLQ
Sbjct: 7 MEIESAYHKGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQ 66
Query: 130 EQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKIL 189
EQGSYVGEVVKPMDKKKVLVKVHPEGKFVVD+DKNIDINDVTPNCRVALRNESYTLHKIL
Sbjct: 67 EQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKIL 126
Query: 190 PNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVL 249
PNKVDPLVSLMMVEKVPDSTYEMVGGLD QIKEIKEVIELPVKHPELFDALGIAQPKGVL
Sbjct: 127 PNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVL 186
Query: 250 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAH 309
LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMA
Sbjct: 187 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMA--------- 237
Query: 310 HPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 369
REHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN
Sbjct: 238 --------------------REHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 277
Query: 370 QLDGFEATK 378
QLDGFEATK
Sbjct: 278 QLDGFEATK 286
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/68 (75%), Positives = 54/68 (79%), Gaps = 4/68 (5%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMD 71
+GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR S MD
Sbjct: 193 TGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS----IIFMD 248
Query: 72 VDEAIKSS 79
++I SS
Sbjct: 249 EIDSIGSS 256
>sp|P54814|PRS8_MANSE 26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1
Length = 402
Score = 528 bits (1360), Expect = e-149, Method: Compositional matrix adjust.
Identities = 266/309 (86%), Positives = 271/309 (87%), Gaps = 31/309 (10%)
Query: 70 MDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQ 129
M+VD EGF+PYY+TKIEELQLIVAEK QNLRRLQAQRNELNAKVRMLREELQLLQ
Sbjct: 6 MEVDST--KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLREELQLLQ 63
Query: 130 EQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKIL 189
EQGSYVGEVVKPMDKKKVLVKVHPEGKFVVD+DKN+DINDVT NCRVALRNESYTLHKIL
Sbjct: 64 EQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKIL 123
Query: 190 PNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVL 249
PNKVDPLVSLMMVEKVPDSTYEMVGGLD QIKEIKEVIELPVKHPELFDALGIAQPKGVL
Sbjct: 124 PNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVL 183
Query: 250 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAH 309
LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMA
Sbjct: 184 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMA--------- 234
Query: 310 HPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 369
REHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN
Sbjct: 235 --------------------REHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 274
Query: 370 QLDGFEATK 378
QLDGFEATK
Sbjct: 275 QLDGFEATK 283
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/68 (75%), Positives = 54/68 (79%), Gaps = 4/68 (5%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMD 71
+GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR S MD
Sbjct: 190 TGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS----IIFMD 245
Query: 72 VDEAIKSS 79
++I SS
Sbjct: 246 EIDSIGSS 253
>sp|P62198|PRS8_RAT 26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5
PE=1 SV=1
Length = 406
Score = 477 bits (1228), Expect = e-134, Method: Compositional matrix adjust.
Identities = 252/309 (81%), Positives = 269/309 (87%), Gaps = 30/309 (9%)
Query: 70 MDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQ 129
M+++E K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LREELQLLQ
Sbjct: 9 MELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQ 67
Query: 130 EQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKIL 189
EQGSYVGEVV+ MDKKKVLVKVHPEGKFVVD+DKNIDINDVTPNCRVALRN+SYTLHKIL
Sbjct: 68 EQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKIL 127
Query: 190 PNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVL 249
PNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPELF+ALGIAQPKGVL
Sbjct: 128 PNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVL 187
Query: 250 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAH 309
LYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMA
Sbjct: 188 LYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMA--------- 238
Query: 310 HPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 369
REHAPSIIFMDEIDSIGSSR+E GSGGDSEVQRTMLELLN
Sbjct: 239 --------------------REHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLN 278
Query: 370 QLDGFEATK 378
QLDGFEATK
Sbjct: 279 QLDGFEATK 287
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 54/68 (79%), Gaps = 4/68 (5%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMD 71
+GKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMAR S MD
Sbjct: 194 TGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS----IIFMD 249
Query: 72 VDEAIKSS 79
++I SS
Sbjct: 250 EIDSIGSS 257
>sp|P62197|PRS8_PIG 26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1
Length = 406
Score = 477 bits (1228), Expect = e-134, Method: Compositional matrix adjust.
Identities = 252/309 (81%), Positives = 269/309 (87%), Gaps = 30/309 (9%)
Query: 70 MDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQ 129
M+++E K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LREELQLLQ
Sbjct: 9 MELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQ 67
Query: 130 EQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKIL 189
EQGSYVGEVV+ MDKKKVLVKVHPEGKFVVD+DKNIDINDVTPNCRVALRN+SYTLHKIL
Sbjct: 68 EQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKIL 127
Query: 190 PNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVL 249
PNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPELF+ALGIAQPKGVL
Sbjct: 128 PNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVL 187
Query: 250 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAH 309
LYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMA
Sbjct: 188 LYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMA--------- 238
Query: 310 HPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 369
REHAPSIIFMDEIDSIGSSR+E GSGGDSEVQRTMLELLN
Sbjct: 239 --------------------REHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLN 278
Query: 370 QLDGFEATK 378
QLDGFEATK
Sbjct: 279 QLDGFEATK 287
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 54/68 (79%), Gaps = 4/68 (5%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMD 71
+GKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMAR S MD
Sbjct: 194 TGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS----IIFMD 249
Query: 72 VDEAIKSS 79
++I SS
Sbjct: 250 EIDSIGSS 257
>sp|P62196|PRS8_MOUSE 26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1
SV=1
Length = 406
Score = 477 bits (1228), Expect = e-134, Method: Compositional matrix adjust.
Identities = 252/309 (81%), Positives = 269/309 (87%), Gaps = 30/309 (9%)
Query: 70 MDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQ 129
M+++E K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LREELQLLQ
Sbjct: 9 MELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQ 67
Query: 130 EQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKIL 189
EQGSYVGEVV+ MDKKKVLVKVHPEGKFVVD+DKNIDINDVTPNCRVALRN+SYTLHKIL
Sbjct: 68 EQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKIL 127
Query: 190 PNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVL 249
PNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPELF+ALGIAQPKGVL
Sbjct: 128 PNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVL 187
Query: 250 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAH 309
LYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMA
Sbjct: 188 LYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMA--------- 238
Query: 310 HPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 369
REHAPSIIFMDEIDSIGSSR+E GSGGDSEVQRTMLELLN
Sbjct: 239 --------------------REHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLN 278
Query: 370 QLDGFEATK 378
QLDGFEATK
Sbjct: 279 QLDGFEATK 287
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 54/68 (79%), Gaps = 4/68 (5%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMD 71
+GKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMAR S MD
Sbjct: 194 TGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS----IIFMD 249
Query: 72 VDEAIKSS 79
++I SS
Sbjct: 250 EIDSIGSS 257
>sp|P62195|PRS8_HUMAN 26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1
SV=1
Length = 406
Score = 477 bits (1228), Expect = e-134, Method: Compositional matrix adjust.
Identities = 252/309 (81%), Positives = 269/309 (87%), Gaps = 30/309 (9%)
Query: 70 MDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQ 129
M+++E K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LREELQLLQ
Sbjct: 9 MELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQ 67
Query: 130 EQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKIL 189
EQGSYVGEVV+ MDKKKVLVKVHPEGKFVVD+DKNIDINDVTPNCRVALRN+SYTLHKIL
Sbjct: 68 EQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKIL 127
Query: 190 PNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVL 249
PNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPELF+ALGIAQPKGVL
Sbjct: 128 PNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVL 187
Query: 250 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAH 309
LYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMA
Sbjct: 188 LYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMA--------- 238
Query: 310 HPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 369
REHAPSIIFMDEIDSIGSSR+E GSGGDSEVQRTMLELLN
Sbjct: 239 --------------------REHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLN 278
Query: 370 QLDGFEATK 378
QLDGFEATK
Sbjct: 279 QLDGFEATK 287
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 54/68 (79%), Gaps = 4/68 (5%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMD 71
+GKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMAR S MD
Sbjct: 194 TGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS----IIFMD 249
Query: 72 VDEAIKSS 79
++I SS
Sbjct: 250 EIDSIGSS 257
>sp|P62194|PRS8_BOVIN 26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1
Length = 406
Score = 477 bits (1228), Expect = e-134, Method: Compositional matrix adjust.
Identities = 252/309 (81%), Positives = 269/309 (87%), Gaps = 30/309 (9%)
Query: 70 MDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQ 129
M+++E K+ G + YY++KIEELQLIV +K QNLRRLQAQRNELNAKVR+LREELQLLQ
Sbjct: 9 MELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQ 67
Query: 130 EQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKIL 189
EQGSYVGEVV+ MDKKKVLVKVHPEGKFVVD+DKNIDINDVTPNCRVALRN+SYTLHKIL
Sbjct: 68 EQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKIL 127
Query: 190 PNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVL 249
PNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPELF+ALGIAQPKGVL
Sbjct: 128 PNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVL 187
Query: 250 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAH 309
LYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMA
Sbjct: 188 LYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMA--------- 238
Query: 310 HPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 369
REHAPSIIFMDEIDSIGSSR+E GSGGDSEVQRTMLELLN
Sbjct: 239 --------------------REHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLN 278
Query: 370 QLDGFEATK 378
QLDGFEATK
Sbjct: 279 QLDGFEATK 287
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 54/68 (79%), Gaps = 4/68 (5%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMD 71
+GKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMAR S MD
Sbjct: 194 TGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS----IIFMD 249
Query: 72 VDEAIKSS 79
++I SS
Sbjct: 250 EIDSIGSS 257
>sp|P46470|PRS8_XENLA 26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2
SV=2
Length = 461
Score = 464 bits (1195), Expect = e-130, Method: Compositional matrix adjust.
Identities = 248/309 (80%), Positives = 267/309 (86%), Gaps = 31/309 (10%)
Query: 70 MDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQ 129
M++DE+ + G + YY++KIE+LQL+V +K QNLRRLQAQRNELNAKVR+LREELQLLQ
Sbjct: 4 MEMDES-RGGTGLRQYYLSKIEDLQLVVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQ 62
Query: 130 EQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKIL 189
EQGSYVGEVV+ MDKKKVLVKVHPEGKFVVD+DKNIDINDVTPNCRVALRN+SYTLHKIL
Sbjct: 63 EQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKIL 122
Query: 190 PNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVL 249
PNKVDPLVSLMMVEKVPDSTYEM+GGLD QIKEIKEVIELPVKHPE F+ALGIAQPKGVL
Sbjct: 123 PNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEHFEALGIAQPKGVL 182
Query: 250 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAH 309
LYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMA
Sbjct: 183 LYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMA--------- 233
Query: 310 HPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 369
REHAPSIIFMDEIDSIG SR+E GSGGDSEVQRTMLELLN
Sbjct: 234 --------------------REHAPSIIFMDEIDSIG-SRLEGGSGGDSEVQRTMLELLN 272
Query: 370 QLDGFEATK 378
QLDGFEATK
Sbjct: 273 QLDGFEATK 281
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/46 (93%), Positives = 46/46 (100%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GKTLLARAVAHHT+CTFIRVSGSELVQKFIGEG+RMVRELFVMAR
Sbjct: 189 TGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAR 234
>sp|Q9C5U3|PRS8A_ARATH 26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana
GN=RPT6A PE=2 SV=1
Length = 419
Score = 447 bits (1150), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/304 (74%), Positives = 249/304 (81%), Gaps = 30/304 (9%)
Query: 75 AIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSY 134
A K EG K YY+ I ELQ + +K NL RL+AQRNELN++VRMLREELQLLQE GSY
Sbjct: 25 AAKQGEGLKQYYLQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSY 84
Query: 135 VGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVD 194
VGEVVK M K KVLVKVHPEGK+VVDIDK+IDI +TP+ RVALRN+SY LH +LP+KVD
Sbjct: 85 VGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVD 144
Query: 195 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 254
PLV+LM VEKVPDSTY+M+GGLD QIKEIKEVIELP+KHPELF++LGIAQPKGVLLYGPP
Sbjct: 145 PLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPP 204
Query: 255 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLF 314
GTGKTLLARAVAHHT+CTFIRVSGSELVQK+IGEGSRMVRELFVMA
Sbjct: 205 GTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA-------------- 250
Query: 315 WSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSG-GDSEVQRTMLELLNQLDG 373
REHAPSIIFMDEIDSIGS+R+ESGSG GDSEVQRTMLELLNQLDG
Sbjct: 251 ---------------REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG 295
Query: 374 FEAT 377
FEA+
Sbjct: 296 FEAS 299
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/46 (93%), Positives = 46/46 (100%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GKTLLARAVAHHT+CTFIRVSGSELVQK+IGEGSRMVRELFVMAR
Sbjct: 206 TGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAR 251
>sp|Q94BQ2|PRS8B_ARATH 26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana
GN=RPT6B PE=2 SV=1
Length = 419
Score = 445 bits (1145), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/304 (73%), Positives = 249/304 (81%), Gaps = 30/304 (9%)
Query: 75 AIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSY 134
A K EG YY+ ++ELQ + EK NL RL+AQRNELN++VRMLREELQLLQE GSY
Sbjct: 25 AAKQGEGLNKYYLQHLDELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSY 84
Query: 135 VGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVD 194
VGEVVK M K KVLVKVHPEGK+VVDIDK+IDI +TP+ RVALRN+SY LH +LP+KVD
Sbjct: 85 VGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVD 144
Query: 195 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 254
PLV+LM VEKVPDSTY+M+GGLD QIKEIKEVIELP+KHPELF++LGIAQPKGVLLYGPP
Sbjct: 145 PLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPP 204
Query: 255 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLF 314
GTGKTLLARAVAHHT+CTFIRVSGSELVQK+IGEGSRMVRELFVMA
Sbjct: 205 GTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA-------------- 250
Query: 315 WSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSG-GDSEVQRTMLELLNQLDG 373
REHAPSIIFMDEIDSIGS+R+ESGSG GDSEVQRTMLELLNQLDG
Sbjct: 251 ---------------REHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDG 295
Query: 374 FEAT 377
FEA+
Sbjct: 296 FEAS 299
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/46 (93%), Positives = 46/46 (100%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GKTLLARAVAHHT+CTFIRVSGSELVQK+IGEGSRMVRELFVMAR
Sbjct: 206 TGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAR 251
>sp|Q25544|PRS8_NAEFO 26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2
SV=1
Length = 414
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/299 (71%), Positives = 246/299 (82%), Gaps = 30/299 (10%)
Query: 81 GFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVK 140
G K YY+ KI+E ++++ +K +NLRRLQAQRNELN +VR L+EELQ LQE GS+VGEVVK
Sbjct: 26 GLKNYYIAKIQEKEIVLRDKIENLRRLQAQRNELNGRVRSLKEELQQLQEPGSHVGEVVK 85
Query: 141 PMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLM 200
M KKKVL+K+ EGK++VDIDK+I++ D+TP RVALRN+SY LHKILPNK+DPLVSLM
Sbjct: 86 VMGKKKVLIKISQEGKYIVDIDKSIELKDLTPGVRVALRNDSYALHKILPNKIDPLVSLM 145
Query: 201 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 260
VEKVPD+TYEMVGGLD QIKEIKEVIELP+KHPELF++LGIAQPKGV++YGPPGTGKTL
Sbjct: 146 KVEKVPDATYEMVGGLDEQIKEIKEVIELPIKHPELFESLGIAQPKGVIMYGPPGTGKTL 205
Query: 261 LARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTI 320
LARAVAHHT+CTFIRVSGSELVQK+IGEGS+MVRELFVMA
Sbjct: 206 LARAVAHHTDCTFIRVSGSELVQKYIGEGSKMVRELFVMA-------------------- 245
Query: 321 LTNTIVCNFREHAPSIIFMDEIDSIGSSRIESG-SGGDSEVQRTMLELLNQLDGFEATK 378
REHAPSIIFMDEIDSIGS+R E G GGDSEVQRTMLELLNQLDGFE+T+
Sbjct: 246 ---------REHAPSIIFMDEIDSIGSTRTEGGKGGGDSEVQRTMLELLNQLDGFESTQ 295
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/46 (91%), Positives = 46/46 (100%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GKTLLARAVAHHT+CTFIRVSGSELVQK+IGEGS+MVRELFVMAR
Sbjct: 201 TGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSKMVRELFVMAR 246
>sp|Q01939|PRS8_YEAST 26S protease regulatory subunit 8 homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT6 PE=1
SV=4
Length = 405
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/298 (68%), Positives = 237/298 (79%), Gaps = 29/298 (9%)
Query: 81 GFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVK 140
G KPY+ KI+E +L + K +N+RRL+AQRN LN KVR +++EL+LLQE GSYVGEV+K
Sbjct: 18 GIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIK 77
Query: 141 PMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLM 200
+ KKVLVKV PEGK++VD+ K+I++ D+ + RV LR++SY LHK+L NK DPLVSLM
Sbjct: 78 IVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLM 137
Query: 201 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 260
MVEKVPDSTY+MVGGL QIKEIKEVIELPVKHPELF++LGIAQPKGV+LYGPPGTGKTL
Sbjct: 138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTL 197
Query: 261 LARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTI 320
LARAVAHHT+C FIRVSG+ELVQK+IGEGSRMVRELFVMA
Sbjct: 198 LARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMA-------------------- 237
Query: 321 LTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATK 378
REHAPSIIFMDEIDSIGS+R+E GGDSEVQRTMLELLNQLDGFE +K
Sbjct: 238 ---------REHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/46 (89%), Positives = 45/46 (97%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GKTLLARAVAHHT+C FIRVSG+ELVQK+IGEGSRMVRELFVMAR
Sbjct: 193 TGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAR 238
>sp|P41836|PRS8_SCHPO 26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=let1 PE=3 SV=1
Length = 403
Score = 406 bits (1044), Expect = e-112, Method: Compositional matrix adjust.
Identities = 217/315 (68%), Positives = 243/315 (77%), Gaps = 33/315 (10%)
Query: 65 TEFFTMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREE 124
TE +V ++S+E YY KI++ +L + +K QNLRRL+AQRN LNA+VR+LREE
Sbjct: 2 TEVLKTNV---LQSNENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREE 58
Query: 125 LQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYT 184
+QLLQE GSYVGEV+K M K KVLVKVHPEGK+VVDI +IDI ++ PN RVALRN+SY
Sbjct: 59 IQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQ 118
Query: 185 LHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQ 244
L KILPNKVDPLVSLMMVEK+PDSTYEMVGGL+ QIKEIKEVIELPVKHPELF++LGI Q
Sbjct: 119 LIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQ 178
Query: 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKK 304
PKG+LLYGPPGTGKTLLARAVAHHT+C FIRVSGSELVQK+IGEGSRMVRELFVMA
Sbjct: 179 PKGILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMA---- 234
Query: 305 LAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEI-DSIGSSRIESGSGGDSEVQRT 363
REHAPSIIFMDEI S SG GDSEVQRT
Sbjct: 235 -------------------------REHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRT 269
Query: 364 MLELLNQLDGFEATK 378
MLELLNQLDGFEATK
Sbjct: 270 MLELLNQLDGFEATK 284
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/51 (84%), Positives = 46/51 (90%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSS 62
+GKTLLARAVAHHT+C FIRVSGSELVQK+IGEGSRMVRELFVMAR S
Sbjct: 190 TGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 240
>sp|P34124|PRS8_DICDI 26S protease regulatory subunit 8 OS=Dictyostelium discoideum
GN=psmC5 PE=1 SV=2
Length = 403
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/301 (70%), Positives = 239/301 (79%), Gaps = 30/301 (9%)
Query: 79 SEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEV 138
++G K YY +KIEEL++ V EK Q+LRRL+AQRNELN +VRML+EELQLL GS+V EV
Sbjct: 13 TKGIKSYYCSKIEELEIKVNEKAQDLRRLEAQRNELNNRVRMLKEELQLLTNPGSHVAEV 72
Query: 139 VKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVS 198
VK M K KVLVKV+PEGKFVVDID +DI +TP+ R AL++ESYTLH+ILPNK+DPLVS
Sbjct: 73 VKLMGKNKVLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLHRILPNKIDPLVS 132
Query: 199 LMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGK 258
LM VEK+PDSTY+MVGGLD QIKEIKEVIELP+KHPELF++LGIAQPKGVLLYGPPGTGK
Sbjct: 133 LMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGK 192
Query: 259 TLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLL 318
TLLARAVAHHT+CTFIRVSGSELVQK+IGEGSRMVRELF+MA
Sbjct: 193 TLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFIMA------------------ 234
Query: 319 TILTNTIVCNFREHAPSIIFMDEID-SIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 377
REHAPSIIFMDEID S GGDSEVQRTMLELLNQLDGFE+T
Sbjct: 235 -----------REHAPSIIFMDEIDSIGSSRGESGSGGGDSEVQRTMLELLNQLDGFEST 283
Query: 378 K 378
K
Sbjct: 284 K 284
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/46 (91%), Positives = 46/46 (100%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GKTLLARAVAHHT+CTFIRVSGSELVQK+IGEGSRMVRELF+MAR
Sbjct: 190 TGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFIMAR 235
>sp|Q8SQK0|PRS8_ENCCU 26S protease regulatory subunit 8 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPT6 PE=1 SV=1
Length = 453
Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/301 (62%), Positives = 232/301 (77%), Gaps = 30/301 (9%)
Query: 77 KSSEGF-KPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYV 135
+ +EGF K +Y K++ L++ +A+K + LR L+ +R ELN +VR LREE+ ++QE S V
Sbjct: 61 RMAEGFCKNFYSNKLDHLEVQIAKKTKILRVLEQKRAELNRRVRFLREEISIVQEPSSNV 120
Query: 136 GEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDP 195
G VV+ M K +VLVK +P+GK++V ++ ++ +++ RVALR++SY +H+ILP KVDP
Sbjct: 121 GVVVEKMGKMQVLVKTNPDGKYLVKVEPGVNYDELKAGVRVALRSDSYDVHRILPTKVDP 180
Query: 196 LVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 255
LVSLMMVEKVPDSTY+M+GGLD QIKEI+EVIELP+KHPELF+ LGIAQPKGVLLYGPPG
Sbjct: 181 LVSLMMVEKVPDSTYQMIGGLDEQIKEIREVIELPIKHPELFENLGIAQPKGVLLYGPPG 240
Query: 256 TGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFW 315
TGKTLLARAVAHHT+C FIRVSGSELVQK+IGEGSR+VRELF+MA
Sbjct: 241 TGKTLLARAVAHHTQCKFIRVSGSELVQKYIGEGSRLVRELFIMA--------------- 285
Query: 316 SLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 375
REHAPSIIFMDEIDSIGS+R +S G DSEVQRTMLELLNQLDGFE
Sbjct: 286 --------------REHAPSIIFMDEIDSIGSTRGDSNKGSDSEVQRTMLELLNQLDGFE 331
Query: 376 A 376
+
Sbjct: 332 S 332
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 54/70 (77%), Gaps = 4/70 (5%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMD 71
+GKTLLARAVAHHT+C FIRVSGSELVQK+IGEGSR+VRELF+MAR S MD
Sbjct: 241 TGKTLLARAVAHHTQCKFIRVSGSELVQKYIGEGSRLVRELFIMAREHAPS----IIFMD 296
Query: 72 VDEAIKSSEG 81
++I S+ G
Sbjct: 297 EIDSIGSTRG 306
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/292 (43%), Positives = 181/292 (61%), Gaps = 34/292 (11%)
Query: 89 KIEELQLIVAEKEQNLRRLQAQ--RNELNAK---VRMLREELQLLQEQGSYVGEVVKPMD 143
+IE + EKE + R + R EL K + LR +LQ +++ VG V + +D
Sbjct: 52 RIEARRRKTLEKELEMERDEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILD 111
Query: 144 KKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVE 203
+V+VK KFV ++ +D N++ P VAL +S + +LP++ D V M V+
Sbjct: 112 DGRVIVKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVD 171
Query: 204 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 263
+ PD +Y+ +GGLD QI+EI+EV+E P+K PELF+ +G+ PKGVLLYGPPGTGKTLLA+
Sbjct: 172 ESPDVSYDDIGGLDEQIREIREVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTLLAK 231
Query: 264 AVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTN 323
AVA+H + TFIR++ ELVQKFIGEG+R+VRELF +A
Sbjct: 232 AVANHADATFIRLAAPELVQKFIGEGARLVRELFELA----------------------- 268
Query: 324 TIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 375
RE APSIIF+DEID+IG+ R+ + GD EVQRT+ +LL ++DGF+
Sbjct: 269 ------REKAPSIIFIDEIDAIGARRMRDATSGDREVQRTLTQLLAEMDGFD 314
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 43/51 (84%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSS 62
+GKTLLA+AVA+H + TFIR++ ELVQKFIGEG+R+VRELF +AR K S
Sbjct: 224 TGKTLLAKAVANHADATFIRLAAPELVQKFIGEGARLVRELFELAREKAPS 274
>sp|O26824|PAN_METTH Proteasome-activating nucleotidase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=pan PE=3 SV=1
Length = 410
Score = 231 bits (590), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 114/270 (42%), Positives = 175/270 (64%), Gaps = 29/270 (10%)
Query: 107 LQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNID 166
++ +R L+ +V+ LR E++ + + V + +D +V VK FV++ + ID
Sbjct: 47 IENERTRLDREVKSLRGEIERFRTPPLVIATVTEVLDDHRVAVKSTTGPHFVINYSRFID 106
Query: 167 INDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEV 226
+ P RVAL +++++ +LP++ DP+V+ M VE+ PD +YE +GGL+ Q++E+KE
Sbjct: 107 RKQLEPGARVALNQQTFSIVDVLPSEKDPVVTGMEVEEKPDVSYEQIGGLEEQVREVKET 166
Query: 227 IELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFI 286
+ELP+K PELF+ +GI PKGVLLYGPPGTGKTLLA+AVAH T TFI++ SE V+K+I
Sbjct: 167 VELPLKKPELFEKIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVRKYI 226
Query: 287 GEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIG 346
GEG+R+VR +F +A +E +PSIIF+DEID++
Sbjct: 227 GEGARLVRGVFELA-----------------------------KEKSPSIIFIDEIDAVA 257
Query: 347 SSRIESGSGGDSEVQRTMLELLNQLDGFEA 376
+ R++S + GD EVQRT+++LL +LDGFE+
Sbjct: 258 AKRLKSSTSGDREVQRTLMQLLAELDGFES 287
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 40/51 (78%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSS 62
+GKTLLA+AVAH T TFI++ SE V+K+IGEG+R+VR +F +A+ K S
Sbjct: 196 TGKTLLAKAVAHETNATFIKIVASEFVRKYIGEGARLVRGVFELAKEKSPS 246
>sp|P62193|PRS4_RAT 26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1
PE=2 SV=1
Length = 440
Score = 228 bits (582), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 122/276 (44%), Positives = 169/276 (61%), Gaps = 29/276 (10%)
Query: 101 EQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVD 160
E+ R Q Q L K R ++ L+ VG + + +D +V + V
Sbjct: 75 EEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVS 134
Query: 161 IDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQI 220
I +D + + P C V L ++ + + +L + DPLV++M VEK P TY +GGLDNQI
Sbjct: 135 ILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQI 194
Query: 221 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 280
+EIKE +ELP+ HPE ++ +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF+RV GSE
Sbjct: 195 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 254
Query: 281 LVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMD 340
L+QK++G+G ++VRELF +A EHAPSI+F+D
Sbjct: 255 LIQKYLGDGPKLVRELFRVAE-----------------------------EHAPSIVFID 285
Query: 341 EIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376
EID+IG+ R +S SGG+ E+QRTMLELLNQLDGF++
Sbjct: 286 EIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 321
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 39/45 (86%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMA 56
+GKTLLA+AVA+ T TF+RV GSEL+QK++G+G ++VRELF +A
Sbjct: 230 TGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVA 274
>sp|P62192|PRS4_MOUSE 26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1
SV=1
Length = 440
Score = 228 bits (582), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 122/276 (44%), Positives = 169/276 (61%), Gaps = 29/276 (10%)
Query: 101 EQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVD 160
E+ R Q Q L K R ++ L+ VG + + +D +V + V
Sbjct: 75 EEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVS 134
Query: 161 IDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQI 220
I +D + + P C V L ++ + + +L + DPLV++M VEK P TY +GGLDNQI
Sbjct: 135 ILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQI 194
Query: 221 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 280
+EIKE +ELP+ HPE ++ +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF+RV GSE
Sbjct: 195 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 254
Query: 281 LVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMD 340
L+QK++G+G ++VRELF +A EHAPSI+F+D
Sbjct: 255 LIQKYLGDGPKLVRELFRVAE-----------------------------EHAPSIVFID 285
Query: 341 EIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376
EID+IG+ R +S SGG+ E+QRTMLELLNQLDGF++
Sbjct: 286 EIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 321
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 39/45 (86%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMA 56
+GKTLLA+AVA+ T TF+RV GSEL+QK++G+G ++VRELF +A
Sbjct: 230 TGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVA 274
>sp|P62191|PRS4_HUMAN 26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1
SV=1
Length = 440
Score = 228 bits (582), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 122/276 (44%), Positives = 169/276 (61%), Gaps = 29/276 (10%)
Query: 101 EQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVD 160
E+ R Q Q L K R ++ L+ VG + + +D +V + V
Sbjct: 75 EEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVS 134
Query: 161 IDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQI 220
I +D + + P C V L ++ + + +L + DPLV++M VEK P TY +GGLDNQI
Sbjct: 135 ILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQI 194
Query: 221 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 280
+EIKE +ELP+ HPE ++ +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF+RV GSE
Sbjct: 195 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 254
Query: 281 LVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMD 340
L+QK++G+G ++VRELF +A EHAPSI+F+D
Sbjct: 255 LIQKYLGDGPKLVRELFRVAE-----------------------------EHAPSIVFID 285
Query: 341 EIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376
EID+IG+ R +S SGG+ E+QRTMLELLNQLDGF++
Sbjct: 286 EIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 321
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 39/45 (86%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMA 56
+GKTLLA+AVA+ T TF+RV GSEL+QK++G+G ++VRELF +A
Sbjct: 230 TGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVA 274
>sp|B8GGN4|PAN_METPE Proteasome-activating nucleotidase OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3
SV=1
Length = 412
Score = 227 bits (578), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 122/284 (42%), Positives = 175/284 (61%), Gaps = 33/284 (11%)
Query: 91 EELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVK 150
E+L+ I A+K R L+ Q+ +VR + E++ ++ +G V +D+ +V+V+
Sbjct: 37 EQLRQIEADK----RYLETQKVRYEREVRKFKGEIEQMKSPPLVIGTVTDLIDENRVIVR 92
Query: 151 VHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTY 210
+F+V I ++++I ++ P R L +S + +ILP D + M V + P Y
Sbjct: 93 SSAGPRFLVGISQSLNIEEIKPGARCTLNQQSLAIVEILPTNYDAQIYGMEVIEAPSERY 152
Query: 211 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 270
E +GGL+ QI EI+E +ELP+K PE+F +GI PKGVLL+GPPGTGKTLLARAVAH TE
Sbjct: 153 EEIGGLEKQINEIREAVELPLKKPEVFRKMGIEPPKGVLLHGPPGTGKTLLARAVAHQTE 212
Query: 271 CTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFR 330
F+RV GSELVQK+IGEG+R+VRELF +A K
Sbjct: 213 AHFLRVVGSELVQKYIGEGARLVRELFELAKKK--------------------------- 245
Query: 331 EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGF 374
+PSIIF+DEID+IG+SR ES + GD EV RT+++LL ++DGF
Sbjct: 246 --SPSIIFIDEIDAIGASRTESNTSGDREVHRTLMQLLAEMDGF 287
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 43/51 (84%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSS 62
+GKTLLARAVAH TE F+RV GSELVQK+IGEG+R+VRELF +A+ K S
Sbjct: 198 TGKTLLARAVAHQTEAHFLRVVGSELVQKYIGEGARLVRELFELAKKKSPS 248
>sp|O28303|PAN_ARCFU Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=pan PE=1 SV=1
Length = 398
Score = 227 bits (578), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 121/269 (44%), Positives = 169/269 (62%), Gaps = 29/269 (10%)
Query: 107 LQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNID 166
++++R +VR LR E++ L+ VG V ++ +V+VK KFVV+ + I+
Sbjct: 37 IESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYIN 96
Query: 167 INDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEV 226
++ P RVAL ++ + +LP DP+V VE+ P+ +YE +GGLD QI+EI+E
Sbjct: 97 EEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKPEVSYEDIGGLDVQIEEIREA 156
Query: 227 IELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFI 286
+ELP+ PELF +GI PKGVLLYGPPGTGKTLLA+AVA+ T TFIRV GSE VQK+I
Sbjct: 157 VELPLLKPELFAEVGIEPPKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYI 216
Query: 287 GEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIG 346
GEG+R+VRE+F +A +E APSIIF+DE+D+I
Sbjct: 217 GEGARLVREVFQLA-----------------------------KEKAPSIIFIDELDAIA 247
Query: 347 SSRIESGSGGDSEVQRTMLELLNQLDGFE 375
+ R S + GD EVQRTM++LL +LDGF+
Sbjct: 248 ARRTNSDTSGDREVQRTMMQLLAELDGFD 276
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 42/51 (82%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSS 62
+GKTLLA+AVA+ T TFIRV GSE VQK+IGEG+R+VRE+F +A+ K S
Sbjct: 186 TGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAKEKAPS 236
>sp|Q90732|PRS4_CHICK 26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2
SV=1
Length = 440
Score = 225 bits (574), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 120/276 (43%), Positives = 168/276 (60%), Gaps = 29/276 (10%)
Query: 101 EQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVD 160
E+ R Q Q L K R ++ L+ VG + + +D +V + V
Sbjct: 75 EEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVS 134
Query: 161 IDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQI 220
I +D + + P C V L ++ + + +L + DPLV++M +EK P TY +GGLDNQI
Sbjct: 135 ILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQI 194
Query: 221 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 280
+EIKE +ELP+ HPE ++ +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF+RV GSE
Sbjct: 195 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 254
Query: 281 LVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMD 340
L+QK++G+G ++VRELF +A EH PSI+F+D
Sbjct: 255 LIQKYLGDGPKLVRELFRVAE-----------------------------EHGPSIVFID 285
Query: 341 EIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376
EID+IG+ R +S SGG+ E+QRTMLELLNQLDGF++
Sbjct: 286 EIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 321
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 41/51 (80%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSS 62
+GKTLLA+AVA+ T TF+RV GSEL+QK++G+G ++VRELF +A G S
Sbjct: 230 TGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPS 280
>sp|B6YXR2|PAN_THEON Proteasome-activating nucleotidase OS=Thermococcus onnurineus
(strain NA1) GN=pan PE=3 SV=1
Length = 398
Score = 225 bits (574), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 125/308 (40%), Positives = 190/308 (61%), Gaps = 39/308 (12%)
Query: 73 DEAIKSSEGFKPY--YVTK-IEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQ 129
D IK SE + Y Y+ K I +L+L V R L+A + L ++ LR E+ L+
Sbjct: 5 DVGIKPSEEYDDYIMYLKKRIRQLELQV-------RTLEADKERLERELSRLRMEMSRLR 57
Query: 130 EQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKIL 189
+ ++ G +++ +D+ + +V+ + +FVV I I+ ++ P RVAL + + ++L
Sbjct: 58 QPPAFAGTLIELLDEDRAIVQNYNGPRFVVRIAPWIERENLKPGARVALDQRTMAIVELL 117
Query: 190 PNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVL 249
P++ DP V V + P +Y +GGLD Q++E++E IELP+KHPELF+ +GI PKGVL
Sbjct: 118 PSEKDPSVLGFEVIERPTVSYNDIGGLDKQLQELREAIELPLKHPELFEKVGIEPPKGVL 177
Query: 250 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAH 309
LYGPPG GKTL+A+A+AH TFIRV GSELV+KFIGEG+R+V ELF +A
Sbjct: 178 LYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKFIGEGARLVHELFELA--------- 228
Query: 310 HPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 369
+E AP+IIF+DEID+IG+ R++ +GG+ EV RT+++LL
Sbjct: 229 --------------------KEKAPAIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLA 268
Query: 370 QLDGFEAT 377
++DGF+ +
Sbjct: 269 EMDGFDPS 276
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 40/50 (80%)
Query: 13 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSS 62
GKTL+A+A+AH TFIRV GSELV+KFIGEG+R+V ELF +A+ K +
Sbjct: 185 GKTLMAKALAHEVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPA 234
>sp|P46471|PRS7_MOUSE 26S protease regulatory subunit 7 OS=Mus musculus GN=Psmc2 PE=1
SV=5
Length = 433
Score = 225 bits (573), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 116/230 (50%), Positives = 147/230 (63%), Gaps = 29/230 (12%)
Query: 146 KVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 205
K ++ V KFVVD+ + D+ RV + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 206 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 265
PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 266 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTI 325
A+ T+ FIRV GSELVQK++GEG+RMVRELF MA KK
Sbjct: 230 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKK--------------------- 268
Query: 326 VCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 375
C +IF DEID+IG +R + G+GGD+EVQRTMLEL+NQLDGF+
Sbjct: 269 AC--------LIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFD 310
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 41/48 (85%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCK 59
+GKTL ARAVA+ T+ FIRV GSELVQK++GEG+RMVRELF MAR K
Sbjct: 220 TGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267
>sp|Q5R8D7|PRS7_PONAB 26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2
SV=3
Length = 433
Score = 225 bits (573), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 116/230 (50%), Positives = 147/230 (63%), Gaps = 29/230 (12%)
Query: 146 KVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 205
K ++ V KFVVD+ + D+ RV + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 206 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 265
PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 266 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTI 325
A+ T+ FIRV GSELVQK++GEG+RMVRELF MA KK
Sbjct: 230 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKK--------------------- 268
Query: 326 VCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 375
C +IF DEID+IG +R + G+GGD+EVQRTMLEL+NQLDGF+
Sbjct: 269 AC--------LIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFD 310
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 41/48 (85%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCK 59
+GKTL ARAVA+ T+ FIRV GSELVQK++GEG+RMVRELF MAR K
Sbjct: 220 TGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267
>sp|Q4R4R0|PRS7_MACFA 26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2
PE=2 SV=3
Length = 433
Score = 225 bits (573), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 116/230 (50%), Positives = 147/230 (63%), Gaps = 29/230 (12%)
Query: 146 KVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 205
K ++ V KFVVD+ + D+ RV + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 206 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 265
PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 266 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTI 325
A+ T+ FIRV GSELVQK++GEG+RMVRELF MA KK
Sbjct: 230 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKK--------------------- 268
Query: 326 VCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 375
C +IF DEID+IG +R + G+GGD+EVQRTMLEL+NQLDGF+
Sbjct: 269 AC--------LIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFD 310
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 41/48 (85%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCK 59
+GKTL ARAVA+ T+ FIRV GSELVQK++GEG+RMVRELF MAR K
Sbjct: 220 TGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267
>sp|P35998|PRS7_HUMAN 26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1
SV=3
Length = 433
Score = 225 bits (573), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 116/230 (50%), Positives = 147/230 (63%), Gaps = 29/230 (12%)
Query: 146 KVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 205
K ++ V KFVVD+ + D+ RV + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 206 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 265
PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 266 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTI 325
A+ T+ FIRV GSELVQK++GEG+RMVRELF MA KK
Sbjct: 230 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKK--------------------- 268
Query: 326 VCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 375
C +IF DEID+IG +R + G+GGD+EVQRTMLEL+NQLDGF+
Sbjct: 269 AC--------LIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFD 310
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 41/48 (85%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCK 59
+GKTL ARAVA+ T+ FIRV GSELVQK++GEG+RMVRELF MAR K
Sbjct: 220 TGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267
>sp|Q5E9F9|PRS7_BOVIN 26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3
Length = 433
Score = 225 bits (573), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 116/230 (50%), Positives = 147/230 (63%), Gaps = 29/230 (12%)
Query: 146 KVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 205
K ++ V KFVVD+ + D+ RV + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 206 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 265
PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 266 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTI 325
A+ T+ FIRV GSELVQK++GEG+RMVRELF MA KK
Sbjct: 230 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKK--------------------- 268
Query: 326 VCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 375
C +IF DEID+IG +R + G+GGD+EVQRTMLEL+NQLDGF+
Sbjct: 269 AC--------LIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFD 310
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 41/48 (85%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCK 59
+GKTL ARAVA+ T+ FIRV GSELVQK++GEG+RMVRELF MAR K
Sbjct: 220 TGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267
>sp|Q18787|PRS7_CAEEL 26S protease regulatory subunit 7 OS=Caenorhabditis elegans
GN=rpt-1 PE=1 SV=1
Length = 435
Score = 225 bits (573), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 115/230 (50%), Positives = 148/230 (64%), Gaps = 29/230 (12%)
Query: 146 KVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 205
+ L+ V KFVVD+ ++ D+ RV + Y +H LP K+DP V++M VE+
Sbjct: 112 RYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEK 171
Query: 206 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 265
PD TY VGG +QI++++EV+E P+ HPE + LGI PKGVLLYGPPGTGKTL ARAV
Sbjct: 172 PDVTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEPPKGVLLYGPPGTGKTLCARAV 231
Query: 266 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTI 325
A+ T+ FIRV GSELVQK++GEG+RMVRELF MA KK
Sbjct: 232 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKK--------------------- 270
Query: 326 VCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 375
C +IF DEID++G +R + G GGD+EVQRTMLEL+NQLDGF+
Sbjct: 271 AC--------LIFFDEIDAVGGARFDDGQGGDNEVQRTMLELINQLDGFD 312
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 41/48 (85%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCK 59
+GKTL ARAVA+ T+ FIRV GSELVQK++GEG+RMVRELF MAR K
Sbjct: 222 TGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 269
>sp|Q6LWR0|PAN_METMP Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain S2 / LL) GN=pan PE=3 SV=1
Length = 407
Score = 225 bits (573), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 185/287 (64%), Gaps = 36/287 (12%)
Query: 97 VAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGS-------YVGEVVKPMDKKKVLV 149
+AE E + RL+ + ++N + +++E ++L+ + +G ++ ++++K +V
Sbjct: 27 IAELESKVLRLELKNKDINRENVQIKKENEILKRELDKLRIPPLILGTILDKVNERKAVV 86
Query: 150 KVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDST 209
K F+V++ + +D D+ P RV L ++ + ++LP + D M +E+ PD +
Sbjct: 87 KSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDIS 146
Query: 210 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 269
+E +GGL+NQI++IKEV+ELP+K+PELF+ +GI PKGVLLYGPPGTGKTLLA+AVA+ T
Sbjct: 147 FEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYET 206
Query: 270 ECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNF 329
+F+RV GSELV+KFIGEG+++VR++F +A
Sbjct: 207 NASFVRVVGSELVKKFIGEGAKLVRDVFKLA----------------------------- 237
Query: 330 REHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376
+E +P IIF+DEID++ S R ES +GGD EVQRT+++LL ++DGF++
Sbjct: 238 KEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDS 284
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 42/48 (87%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCK 59
+GKTLLA+AVA+ T +F+RV GSELV+KFIGEG+++VR++F +A+ K
Sbjct: 193 TGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEK 240
>sp|A4G0S4|PAN_METM5 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1
Length = 407
Score = 224 bits (572), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 185/289 (64%), Gaps = 29/289 (10%)
Query: 88 TKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKV 147
T+I EL+ V E + + + ++ + +L+ EL L+ +G ++ ++++K
Sbjct: 25 TQIAELESKVLRLELKNKDISRENVQIKKENEILKRELDKLRIPPLILGTILDRVNERKA 84
Query: 148 LVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPD 207
+VK F+V++ + +D +D+ P RV L ++ + ++LP + D M +E+ PD
Sbjct: 85 VVKSSTGPNFLVNLSQFVDPDDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPD 144
Query: 208 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 267
++E +GGL+NQI++IKEV+ELP+K+PELF+ +GI PKGVLLYGPPGTGKTLLA+AVA+
Sbjct: 145 ISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAY 204
Query: 268 HTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVC 327
T +F+RV GSELV+KFIGEG+++VR++F +A
Sbjct: 205 ETNASFVRVVGSELVKKFIGEGAKLVRDVFKLA--------------------------- 237
Query: 328 NFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376
+E +P IIF+DEID++ S R ES +GGD EVQRT+++LL ++DGF++
Sbjct: 238 --KEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDS 284
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 42/48 (87%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCK 59
+GKTLLA+AVA+ T +F+RV GSELV+KFIGEG+++VR++F +A+ K
Sbjct: 193 TGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEK 240
>sp|P46472|PRS7_XENLA 26S protease regulatory subunit 7 OS=Xenopus laevis GN=psmc2 PE=2
SV=1
Length = 433
Score = 224 bits (572), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 116/230 (50%), Positives = 147/230 (63%), Gaps = 29/230 (12%)
Query: 146 KVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 205
K ++ V KFVVD+ + D+ RV + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 206 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 265
PD TY VGG QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 266 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTI 325
A+ T+ FIRV GSELVQK++GEG+RMVRELF MA KK
Sbjct: 230 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKK--------------------- 268
Query: 326 VCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 375
C +IF DEID+IG +R + G+GGD+EVQRTMLEL+NQLDGF+
Sbjct: 269 AC--------LIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFD 310
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 41/48 (85%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCK 59
+GKTL ARAVA+ T+ FIRV GSELVQK++GEG+RMVRELF MAR K
Sbjct: 220 TGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 267
>sp|O57940|PAN_PYRHO Proteasome-activating nucleotidase OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=pan PE=3 SV=1
Length = 399
Score = 224 bits (572), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 120/294 (40%), Positives = 180/294 (61%), Gaps = 29/294 (9%)
Query: 82 FKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKP 141
F+ Y I L+ + + E +R L+A + L ++ LR E+ L++ ++ G V++
Sbjct: 11 FQGDYDDYITYLKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEV 70
Query: 142 MDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMM 201
+D+ + +V+ + +FVV I ID + P RVAL + + +ILP DP V
Sbjct: 71 LDEDRAIVQNYNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFE 130
Query: 202 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 261
V + P+ TY +GGL Q++E++E IELP+KHPELF+ +GI PKGVLLYGPPG GKTL+
Sbjct: 131 VIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLM 190
Query: 262 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTIL 321
A+A+AH TFIRV GSELV+K+IGEG+R+V ELF +A
Sbjct: 191 AKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELA--------------------- 229
Query: 322 TNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 375
+E AP+IIF+DEID+IG+ R++ +GG+ EV RT+++LL ++DGF+
Sbjct: 230 --------KEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFD 275
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 40/50 (80%)
Query: 13 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSS 62
GKTL+A+A+AH TFIRV GSELV+K+IGEG+R+V ELF +A+ K +
Sbjct: 186 GKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPT 235
>sp|Q5JHS5|PAN_PYRKO Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=pan PE=3
SV=1
Length = 397
Score = 224 bits (572), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 188/306 (61%), Gaps = 33/306 (10%)
Query: 70 MDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQ 129
M ++ EG+ Y + L+ + + E +R L+A + L ++ LR E+ L+
Sbjct: 1 MSIENTDVHPEGYDDY----VTFLKRRIRQLELQVRTLEADKERLERELSRLRMEMSRLR 56
Query: 130 EQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKIL 189
+ ++ G V++ +D ++ +V+ + +FVV I I+ + + P RVAL + + ++L
Sbjct: 57 QPPAFAGNVIEVLDDERAIVQNYNGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELL 116
Query: 190 PNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVL 249
P++ DP V V + P TY +GGL+ Q++E++E IELP+KHPELF+ +GI PKGVL
Sbjct: 117 PSEKDPSVLGFEVIERPKVTYNDIGGLEKQLQELREAIELPLKHPELFEQVGIEPPKGVL 176
Query: 250 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAH 309
LYGPPG GKTL+A+AVA+H TFIRV GSELV+KFIGEG+R+V ELF +A
Sbjct: 177 LYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFELA--------- 227
Query: 310 HPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 369
+E AP+IIF+DEID+IG+ R++ +GG+ EV RT+++LL
Sbjct: 228 --------------------KEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLA 267
Query: 370 QLDGFE 375
++DGF+
Sbjct: 268 EMDGFD 273
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 41/50 (82%)
Query: 13 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSS 62
GKTL+A+AVA+H TFIRV GSELV+KFIGEG+R+V ELF +A+ K +
Sbjct: 184 GKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPT 233
>sp|O64982|PRS7_PRUPE 26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2
SV=1
Length = 425
Score = 224 bits (571), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 132/312 (42%), Positives = 182/312 (58%), Gaps = 37/312 (11%)
Query: 73 DEAIKSSEGFKPY--YVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRM-LREELQLLQ 129
D A+ + G PY ++ K E+ +A+K +L ++ L A + L + Q++Q
Sbjct: 21 DIALLKTYGLGPYSTHIKKAEKEVKDLAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQ 80
Query: 130 E----QGSYVGEVVKP-MDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYT 184
E Q + +++ P + K ++ V KFVV + + D+ RV + Y
Sbjct: 81 EEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQ 140
Query: 185 LHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQ 244
+ LP K+DP V++M VE+ PD TY VGG QI++++EV+ELP+ HPE F LGI
Sbjct: 141 IQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP 200
Query: 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKK 304
PKGVL YGPPGTGKTLLARAVA+ T+ FIRV GSELVQK++GEG+RMVRELF MA KK
Sbjct: 201 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKK 260
Query: 305 LAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 364
I+F DE+D+IG +R + G GGD+EVQRTM
Sbjct: 261 AC-----------------------------IVFFDEVDAIGGARFDDGVGGDNEVQRTM 291
Query: 365 LELLNQLDGFEA 376
LE++NQLDGF+A
Sbjct: 292 LEIVNQLDGFDA 303
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/48 (75%), Positives = 42/48 (87%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCK 59
+GKTLLARAVA+ T+ FIRV GSELVQK++GEG+RMVRELF MAR K
Sbjct: 212 TGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 259
>sp|Q8U4H3|PAN_PYRFU Proteasome-activating nucleotidase OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pan PE=3 SV=1
Length = 396
Score = 224 bits (571), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 119/294 (40%), Positives = 179/294 (60%), Gaps = 29/294 (9%)
Query: 82 FKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKP 141
F Y + L+ + + E +R L+A + L ++ LR E+ L++ ++ G V++
Sbjct: 8 FHGNYDDYVTYLKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGSVIEV 67
Query: 142 MDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMM 201
+D + +V+ + +FVV I ID + + P RVAL + + +ILP DP V
Sbjct: 68 LDDDRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFE 127
Query: 202 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 261
V + P+ TY +GGL Q++E++E IELP+KHPELF+ +GI PKGVLLYGPPG GKTL+
Sbjct: 128 VVERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLM 187
Query: 262 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTIL 321
A+A+AH TFIRV GSELV+K+IGEG+R+V ELF +A
Sbjct: 188 AKAIAHEVNATFIRVVGSELVRKYIGEGARLVHELFELA--------------------- 226
Query: 322 TNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 375
+E AP+IIF+DEID+IG+ R++ +GG+ EV RT+++LL ++DGF+
Sbjct: 227 --------KEKAPTIIFIDEIDAIGAKRLDETTGGEREVNRTLMQLLAEMDGFD 272
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 40/50 (80%)
Query: 13 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSS 62
GKTL+A+A+AH TFIRV GSELV+K+IGEG+R+V ELF +A+ K +
Sbjct: 183 GKTLMAKAIAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPT 232
>sp|C5A6P8|PAN_THEGJ Proteasome-activating nucleotidase OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1
Length = 397
Score = 224 bits (571), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 180/290 (62%), Gaps = 29/290 (10%)
Query: 86 YVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKK 145
Y I L+ + + E +R L+A + L ++ LR E+ L++ ++ G V++ +D
Sbjct: 13 YEDYITFLKRRIRQLELQVRTLEADKERLERELSRLRTEMSRLRQPPAFAGTVIEVLDDD 72
Query: 146 KVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 205
+ +V+ + +FVV I I+ + + P RVAL + + ++LP + DP V V +
Sbjct: 73 RAIVQNYNGPRFVVRIAPWIERDKLKPGSRVALDQRTMAIVELLPTEKDPSVLGFEVIEK 132
Query: 206 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 265
P TY+ +GGL+ Q+ E++E +ELP+KHPELF+ +GI PKGVLLYGPPG GKTL+A+AV
Sbjct: 133 PRVTYQDIGGLERQLAELREAVELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKAV 192
Query: 266 AHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTI 325
A+H TFIRV GSELV+KFIGEG+R+V ELF MA
Sbjct: 193 ANHVNATFIRVVGSELVRKFIGEGARLVHELFEMA------------------------- 227
Query: 326 VCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 375
+E AP+IIF+DEID+IG+ R++ +GG+ EV RT+++LL ++DGF+
Sbjct: 228 ----KEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFD 273
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 41/50 (82%)
Query: 13 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSS 62
GKTL+A+AVA+H TFIRV GSELV+KFIGEG+R+V ELF MA+ K +
Sbjct: 184 GKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFEMAKEKAPT 233
>sp|A6VHR1|PAN_METM7 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1
Length = 407
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/287 (40%), Positives = 185/287 (64%), Gaps = 36/287 (12%)
Query: 97 VAEKEQNLRRLQAQRNEL---NAKVR----MLREELQLLQEQGSYVGEVVKPMDKKKVLV 149
+AE E + RL+ + ++ N +++ +L+ EL L+ +G ++ ++++K +V
Sbjct: 27 IAELESKVLRLELKNKDVTRENVQIKKENEILKRELDKLRIPPLILGTILDKVNERKAVV 86
Query: 150 KVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDST 209
K F+V++ + +D D+ P RV L ++ + ++LP + D M +E+ PD +
Sbjct: 87 KSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDIS 146
Query: 210 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 269
+E +GGL+NQI++IKEV+ELP+K+PELF+ +GI PKGVLLYGPPGTGKTLLA+AVA+ T
Sbjct: 147 FEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYET 206
Query: 270 ECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNF 329
+F+RV GSELV+KFIGEG+++VR++F +A
Sbjct: 207 NASFVRVVGSELVKKFIGEGAKLVRDVFKLA----------------------------- 237
Query: 330 REHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376
+E +P IIF+DEID++ S R ES +GGD EVQRT+++LL ++DGF++
Sbjct: 238 KEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDS 284
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 42/48 (87%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCK 59
+GKTLLA+AVA+ T +F+RV GSELV+KFIGEG+++VR++F +A+ K
Sbjct: 193 TGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEK 240
>sp|Q0W257|PAN_UNCMA Proteasome-activating nucleotidase OS=Uncultured methanogenic
archaeon RC-I GN=pan PE=3 SV=1
Length = 417
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 182/301 (60%), Gaps = 36/301 (11%)
Query: 82 FKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAK-------VRMLREELQLLQEQGSY 134
F Y + ++++L+ ++ R+++ ++ + K +R L EL L+
Sbjct: 23 FSKYLLDRVKQLEERNVRLKEEYRKIELEKKSVENKKVQYEREIRKLTSELDRLKTPPLI 82
Query: 135 VGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVD 194
VG ++ M K+++K KFVV+ + I+ +V P +VAL +S + ++LP D
Sbjct: 83 VGTILDVMANGKMIIKSSTGPKFVVNSSQFINSKEVYPGAKVALNQQSLAVIEVLPTVKD 142
Query: 195 PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 254
P V M V P+ Y+ +GGL+ QI E+KE +ELP+ PELF +GI PKGVLLYGPP
Sbjct: 143 PSVLGMEVVDSPEIDYQSIGGLEAQINELKETVELPLLKPELFQKVGIEPPKGVLLYGPP 202
Query: 255 GTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLF 314
GTGKTLLA+AVA+ T+ TFIR+ GSELVQK+IGEG+RMVRELF +A
Sbjct: 203 GTGKTLLAKAVANRTKATFIRIIGSELVQKYIGEGARMVRELFELA-------------- 248
Query: 315 WSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGF 374
+E +PSIIF+DEIDSIG+ R++S + GD EVQRT+++LL ++DGF
Sbjct: 249 ---------------KEKSPSIIFIDEIDSIGAKRLDSITSGDREVQRTLVQLLAEMDGF 293
Query: 375 E 375
+
Sbjct: 294 D 294
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 44/51 (86%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSS 62
+GKTLLA+AVA+ T+ TFIR+ GSELVQK+IGEG+RMVRELF +A+ K S
Sbjct: 204 TGKTLLAKAVANRTKATFIRIIGSELVQKYIGEGARMVRELFELAKEKSPS 254
>sp|Q9FXT9|PRS7_ORYSJ 26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica
GN=RPT1A PE=2 SV=1
Length = 426
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/312 (42%), Positives = 181/312 (58%), Gaps = 37/312 (11%)
Query: 73 DEAIKSSEGFKPYY--VTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRM-LREELQLLQ 129
D A+ + G PY + K+E+ +A+K +L ++ L + L + Q++Q
Sbjct: 22 DIALLKTYGLGPYSTSIKKVEKEIKEMAKKINDLCGIKESDTGLAPPSQWDLVSDKQMMQ 81
Query: 130 E----QGSYVGEVVKP-MDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYT 184
E Q + +++ P D K ++ V KFVV + + D+ RV + Y
Sbjct: 82 EEQPLQVARCTKIISPNTDDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQ 141
Query: 185 LHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQ 244
+ LP K+DP V++M VE+ PD TY VGG QI++++EV+ELP+ HPE F LGI
Sbjct: 142 IQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP 201
Query: 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKK 304
PKGVL YGPPGTGKTLLARAVA+ T+ FIRV GSELVQK++GEG+RMVRELF MA KK
Sbjct: 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKK 261
Query: 305 LAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 364
I+F DE+D+IG +R + G GGD+EVQRTM
Sbjct: 262 AC-----------------------------IVFFDEVDAIGGARFDDGVGGDNEVQRTM 292
Query: 365 LELLNQLDGFEA 376
LE++NQLDGF+A
Sbjct: 293 LEIVNQLDGFDA 304
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/48 (75%), Positives = 42/48 (87%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCK 59
+GKTLLARAVA+ T+ FIRV GSELVQK++GEG+RMVRELF MAR K
Sbjct: 213 TGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 260
>sp|A9A916|PAN_METM6 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1
Length = 407
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 184/289 (63%), Gaps = 29/289 (10%)
Query: 88 TKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKV 147
T+I EL+ V E + + + ++ + +L+ EL L+ +G ++ ++++K
Sbjct: 25 TQIAELESKVLRLELKNKDISRENVQIKKENEILKRELDKLRIPPLILGTILDRVNERKA 84
Query: 148 LVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPD 207
+VK F+V++ + +D D+ P RV L ++ + ++LP + D M +E+ PD
Sbjct: 85 VVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPD 144
Query: 208 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 267
++E +GGL+NQI++IKEV+ELP+K+PELF+ +GI PKGVLLYGPPGTGKTLLA+AVA+
Sbjct: 145 ISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAY 204
Query: 268 HTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVC 327
T +F+RV GSELV+KFIGEG+++VR++F +A
Sbjct: 205 ETNASFVRVVGSELVKKFIGEGAKLVRDVFKLA--------------------------- 237
Query: 328 NFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376
+E +P IIF+DEID++ S R ES +GGD EVQRT+++LL ++DGF++
Sbjct: 238 --KEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDS 284
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 42/48 (87%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCK 59
+GKTLLA+AVA+ T +F+RV GSELV+KFIGEG+++VR++F +A+ K
Sbjct: 193 TGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEK 240
>sp|Q9SEI3|PS10A_ARATH 26S protease regulatory subunit 10B homolog A OS=Arabidopsis
thaliana GN=RPT4A PE=2 SV=1
Length = 399
Score = 223 bits (569), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/308 (39%), Positives = 180/308 (58%), Gaps = 39/308 (12%)
Query: 71 DVDEAIKSSEGFKPYYVTKI---EELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQL 127
DVDE+++ Y K+ +EL+ V +NLR + + N+ ++L+
Sbjct: 3 DVDESVRRRTAAVSEYRKKLLQHKELESRVRTARENLRGAKKEFNKTE-------DDLKS 55
Query: 128 LQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHK 187
LQ G +GEV++P+D ++++VK ++VV +D +T RV L + T+ +
Sbjct: 56 LQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMR 115
Query: 188 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKG 247
LP +VDP+V M+ E + +Y VGGL +QI+E++E IELP+ +PELF +GI PKG
Sbjct: 116 ALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKG 175
Query: 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAF 307
VLLYGPPGTGKTLLARA+A + + F++V S ++ K+IGE +R++RE+F A
Sbjct: 176 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA------- 228
Query: 308 AHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL 367
REH P IIFMDEID+IG R G+ D E+QRT++EL
Sbjct: 229 ----------------------REHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMEL 266
Query: 368 LNQLDGFE 375
LNQLDGF+
Sbjct: 267 LNQLDGFD 274
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 35/46 (76%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GKTLLARA+A + + F++V S ++ K+IGE +R++RE+F AR
Sbjct: 184 TGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAR 229
>sp|Q41365|PRS7_SPIOL 26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2
SV=1
Length = 426
Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/312 (41%), Positives = 182/312 (58%), Gaps = 37/312 (11%)
Query: 73 DEAIKSSEGFKPYY--VTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRM-LREELQLLQ 129
D A+ + G PY + K+E+ +++K +L ++ L A + L + Q++Q
Sbjct: 22 DIALLKTYGLGPYSASIKKVEKEIKDMSKKVNDLIGIKESDTGLAAPSQWDLVSDKQMMQ 81
Query: 130 E----QGSYVGEVVKP-MDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYT 184
E Q + +++ P + K ++ V KFVV + + D+ RV + Y
Sbjct: 82 EEQPLQVARCTKIINPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQ 141
Query: 185 LHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQ 244
+ LP K+DP V++M VE+ PD TY VGG QI++++EV+ELP+ HPE F LGI
Sbjct: 142 IQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP 201
Query: 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKK 304
PKGVL YGPPGTGKTLLARAVA+ T+ FIRV GSELVQK++GEG+RMVRELF MA KK
Sbjct: 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKK 261
Query: 305 LAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 364
I+F DE+D+IG +R + G GGD+EVQRTM
Sbjct: 262 AC-----------------------------IVFFDEVDAIGGARFDDGVGGDNEVQRTM 292
Query: 365 LELLNQLDGFEA 376
LE++NQLDGF+A
Sbjct: 293 LEIVNQLDGFDA 304
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/48 (75%), Positives = 42/48 (87%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCK 59
+GKTLLARAVA+ T+ FIRV GSELVQK++GEG+RMVRELF MAR K
Sbjct: 213 TGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 260
>sp|P48601|PRS4_DROME 26S protease regulatory subunit 4 OS=Drosophila melanogaster
GN=Pros26.4 PE=2 SV=2
Length = 439
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/275 (42%), Positives = 169/275 (61%), Gaps = 33/275 (12%)
Query: 102 QNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDI 161
+N RL+ Q + K R ++ L+ VG + + +D +V + V I
Sbjct: 79 RNQERLKPQ----DEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSI 134
Query: 162 DKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIK 221
+D + + P C V L ++ + + +L + DP+V++M +EK P TY +GGLD QI+
Sbjct: 135 LSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQ 194
Query: 222 EIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 281
EIKE +ELP+ HPE ++ +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF+RV GSEL
Sbjct: 195 EIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 254
Query: 282 VQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDE 341
+QK++G+G ++VRELF +A EHAPSI+F+DE
Sbjct: 255 IQKYLGDGPKLVRELFRVAE-----------------------------EHAPSIVFIDE 285
Query: 342 IDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376
ID++G+ R +S SGG+ E+QRTMLELLNQLDGF++
Sbjct: 286 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 320
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 39/45 (86%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMA 56
+GKTLLA+AVA+ T TF+RV GSEL+QK++G+G ++VRELF +A
Sbjct: 229 TGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVA 273
>sp|P62335|PRS10_SPETR 26S protease regulatory subunit 10B OS=Spermophilus
tridecemlineatus GN=PSMC6 PE=2 SV=1
Length = 389
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/278 (42%), Positives = 165/278 (59%), Gaps = 29/278 (10%)
Query: 99 EKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFV 158
E + L+ L+ Q EL + +L+ LQ G VGEV+K + ++K +VK ++V
Sbjct: 21 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 80
Query: 159 VDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 218
V + +D + + P RVAL + T+ + LP +VDPLV M E + +Y +GGL
Sbjct: 81 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSE 140
Query: 219 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 278
QI+E++EVIELP+ +PELF +GI PKG LLYGPPGTGKTLLARAVA +C F++V
Sbjct: 141 QIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVS 200
Query: 279 SELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIF 338
S +V K+IGE +R++RE+F A R+H P IIF
Sbjct: 201 SSIVDKYIGESARLIREMFNYA-----------------------------RDHQPCIIF 231
Query: 339 MDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376
MDEID+IG R G+ D E+QRT++ELLNQ+DGF+
Sbjct: 232 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDT 269
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 35/46 (76%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GKTLLARAVA +C F++V S +V K+IGE +R++RE+F AR
Sbjct: 178 TGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYAR 223
>sp|P62334|PRS10_MOUSE 26S protease regulatory subunit 10B OS=Mus musculus GN=Psmc6 PE=1
SV=1
Length = 389
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/278 (42%), Positives = 165/278 (59%), Gaps = 29/278 (10%)
Query: 99 EKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFV 158
E + L+ L+ Q EL + +L+ LQ G VGEV+K + ++K +VK ++V
Sbjct: 21 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 80
Query: 159 VDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 218
V + +D + + P RVAL + T+ + LP +VDPLV M E + +Y +GGL
Sbjct: 81 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSE 140
Query: 219 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 278
QI+E++EVIELP+ +PELF +GI PKG LLYGPPGTGKTLLARAVA +C F++V
Sbjct: 141 QIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVS 200
Query: 279 SELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIF 338
S +V K+IGE +R++RE+F A R+H P IIF
Sbjct: 201 SSIVDKYIGESARLIREMFNYA-----------------------------RDHQPCIIF 231
Query: 339 MDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376
MDEID+IG R G+ D E+QRT++ELLNQ+DGF+
Sbjct: 232 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDT 269
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 35/46 (76%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GKTLLARAVA +C F++V S +V K+IGE +R++RE+F AR
Sbjct: 178 TGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYAR 223
>sp|P62333|PRS10_HUMAN 26S protease regulatory subunit 10B OS=Homo sapiens GN=PSMC6 PE=1
SV=1
Length = 389
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/278 (42%), Positives = 165/278 (59%), Gaps = 29/278 (10%)
Query: 99 EKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFV 158
E + L+ L+ Q EL + +L+ LQ G VGEV+K + ++K +VK ++V
Sbjct: 21 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 80
Query: 159 VDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 218
V + +D + + P RVAL + T+ + LP +VDPLV M E + +Y +GGL
Sbjct: 81 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSE 140
Query: 219 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 278
QI+E++EVIELP+ +PELF +GI PKG LLYGPPGTGKTLLARAVA +C F++V
Sbjct: 141 QIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVS 200
Query: 279 SELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIF 338
S +V K+IGE +R++RE+F A R+H P IIF
Sbjct: 201 SSIVDKYIGESARLIREMFNYA-----------------------------RDHQPCIIF 231
Query: 339 MDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376
MDEID+IG R G+ D E+QRT++ELLNQ+DGF+
Sbjct: 232 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDT 269
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 35/46 (76%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GKTLLARAVA +C F++V S +V K+IGE +R++RE+F AR
Sbjct: 178 TGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYAR 223
>sp|Q2KIW6|PRS10_BOVIN 26S protease regulatory subunit 10B OS=Bos taurus GN=PSMC6 PE=2
SV=1
Length = 389
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/278 (42%), Positives = 165/278 (59%), Gaps = 29/278 (10%)
Query: 99 EKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFV 158
E + L+ L+ Q EL + +L+ LQ G VGEV+K + ++K +VK ++V
Sbjct: 21 EIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYV 80
Query: 159 VDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDN 218
V + +D + + P RVAL + T+ + LP +VDPLV M E + +Y +GGL
Sbjct: 81 VGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSE 140
Query: 219 QIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 278
QI+E++EVIELP+ +PELF +GI PKG LLYGPPGTGKTLLARAVA +C F++V
Sbjct: 141 QIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVS 200
Query: 279 SELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIF 338
S +V K+IGE +R++RE+F A R+H P IIF
Sbjct: 201 SSIVDKYIGESARLIREMFNYA-----------------------------RDHQPCIIF 231
Query: 339 MDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376
MDEID+IG R G+ D E+QRT++ELLNQ+DGF+
Sbjct: 232 MDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDT 269
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 35/46 (76%)
Query: 12 SGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 57
+GKTLLARAVA +C F++V S +V K+IGE +R++RE+F AR
Sbjct: 178 TGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYAR 223
>sp|Q9V287|PAN_PYRAB Proteasome-activating nucleotidase OS=Pyrococcus abyssi (strain GE5
/ Orsay) GN=pan PE=3 SV=2
Length = 396
Score = 222 bits (565), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 180/294 (61%), Gaps = 29/294 (9%)
Query: 82 FKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKP 141
F Y I L+ + + E +R L+A + L ++ LR E+ L++ ++ G V++
Sbjct: 8 FHENYDDYITYLKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEV 67
Query: 142 MDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMM 201
+D + +V+ + +FVV I I+ + + P RVAL + + ++LP+ DP V
Sbjct: 68 LDDDRAIVQNYNGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFE 127
Query: 202 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 261
V + P+ TY +GGL Q++E++E IELP+KHPELF+ +GI PKGVLLYGPPG GKTL+
Sbjct: 128 VIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLM 187
Query: 262 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTIL 321
A+A+AH TFIRV GSELV+K+IGEG+R+V ELF +A
Sbjct: 188 AKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELA--------------------- 226
Query: 322 TNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 375
+E AP+IIF+DEID+IG+ R++ +GG+ EV RT+++LL ++DGF+
Sbjct: 227 --------KEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFD 272
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 40/50 (80%)
Query: 13 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSS 62
GKTL+A+A+AH TFIRV GSELV+K+IGEG+R+V ELF +A+ K +
Sbjct: 183 GKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPT 232
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,365,890
Number of Sequences: 539616
Number of extensions: 5819650
Number of successful extensions: 34132
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1669
Number of HSP's successfully gapped in prelim test: 767
Number of HSP's that attempted gapping in prelim test: 29337
Number of HSP's gapped (non-prelim): 5060
length of query: 378
length of database: 191,569,459
effective HSP length: 119
effective length of query: 259
effective length of database: 127,355,155
effective search space: 32984985145
effective search space used: 32984985145
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)