Query psy6098
Match_columns 378
No_of_seqs 279 out of 3328
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 17:31:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733|consensus 100.0 1.6E-61 3.5E-66 464.2 9.8 323 5-375 227-643 (802)
2 KOG0730|consensus 100.0 1.7E-55 3.6E-60 428.4 9.4 325 2-377 219-568 (693)
3 KOG0728|consensus 100.0 1.6E-51 3.5E-56 358.2 20.0 273 77-378 13-285 (404)
4 COG1222 RPT1 ATP-dependent 26S 100.0 2.3E-48 4.9E-53 354.9 20.1 241 108-377 48-288 (406)
5 KOG0736|consensus 100.0 3.6E-43 7.8E-48 345.5 16.5 331 5-375 435-805 (953)
6 KOG0727|consensus 100.0 1.6E-40 3.4E-45 289.9 18.3 259 90-377 34-292 (408)
7 TIGR01243 CDC48 AAA family ATP 100.0 2E-41 4.4E-46 353.7 14.0 320 5-375 216-586 (733)
8 KOG0726|consensus 100.0 1.8E-37 3.9E-42 275.6 11.8 227 121-376 95-321 (440)
9 COG0464 SpoVK ATPases of the A 100.0 6.4E-37 1.4E-41 307.5 13.5 327 3-377 20-376 (494)
10 KOG0735|consensus 100.0 1.2E-35 2.6E-40 290.1 19.0 315 5-377 435-801 (952)
11 KOG0741|consensus 100.0 4.8E-36 1E-40 284.6 9.6 308 5-348 260-613 (744)
12 PTZ00454 26S protease regulato 100.0 2.6E-33 5.6E-38 270.8 22.0 256 92-376 26-281 (398)
13 KOG0729|consensus 100.0 1.8E-34 4E-39 253.7 11.7 200 148-376 114-313 (435)
14 KOG0652|consensus 100.0 3.3E-33 7.2E-38 245.1 16.2 202 147-377 107-308 (424)
15 PTZ00361 26 proteosome regulat 100.0 1E-31 2.3E-36 261.2 19.5 234 113-375 85-318 (438)
16 KOG0651|consensus 100.0 4.9E-31 1.1E-35 236.6 14.0 233 114-376 36-268 (388)
17 PRK03992 proteasome-activating 100.0 2E-29 4.3E-34 244.8 22.4 255 92-375 12-266 (389)
18 COG1222 RPT1 ATP-dependent 26S 100.0 5.9E-31 1.3E-35 240.9 1.4 156 5-172 189-351 (406)
19 TIGR01242 26Sp45 26S proteasom 100.0 2.8E-28 6E-33 235.7 19.5 250 97-375 8-257 (364)
20 TIGR03689 pup_AAA proteasome A 99.9 3.5E-25 7.5E-30 218.4 21.7 257 92-376 5-330 (512)
21 KOG0736|consensus 99.9 2.6E-28 5.5E-33 241.1 -0.9 162 5-175 709-876 (953)
22 KOG0739|consensus 99.9 2.7E-26 5.8E-31 205.1 10.9 143 201-376 123-265 (439)
23 COG0542 clpA ATP-binding subun 99.9 4.7E-26 1E-30 230.7 14.0 120 212-369 492-618 (786)
24 KOG0738|consensus 99.9 2.7E-26 5.9E-31 211.7 10.4 147 199-377 200-346 (491)
25 KOG0733|consensus 99.9 5.5E-26 1.2E-30 219.7 11.9 138 207-377 186-323 (802)
26 KOG0734|consensus 99.9 6.4E-26 1.4E-30 216.2 11.9 139 206-377 299-437 (752)
27 KOG0730|consensus 99.9 8.2E-28 1.8E-32 235.1 -1.0 153 5-172 472-631 (693)
28 KOG0738|consensus 99.9 9.6E-27 2.1E-31 214.7 3.7 135 5-153 249-395 (491)
29 TIGR02639 ClpA ATP-dependent C 99.9 7.1E-25 1.5E-29 228.9 17.6 75 2-79 204-290 (731)
30 KOG0731|consensus 99.9 1.6E-24 3.5E-29 218.0 12.7 143 205-377 305-448 (774)
31 KOG0734|consensus 99.9 6.1E-26 1.3E-30 216.4 2.2 153 5-173 341-501 (752)
32 PRK11034 clpA ATP-dependent Cl 99.9 1.7E-24 3.8E-29 223.6 8.7 76 2-80 208-295 (758)
33 CHL00095 clpC Clp protease ATP 99.9 1.3E-23 2.8E-28 221.7 13.9 75 2-79 201-287 (821)
34 KOG0728|consensus 99.9 4.8E-24 1E-28 186.6 3.3 154 5-170 185-345 (404)
35 COG1223 Predicted ATPase (AAA+ 99.9 2.6E-23 5.6E-28 182.9 7.9 138 203-375 113-250 (368)
36 KOG0739|consensus 99.9 1.2E-23 2.7E-28 188.1 5.5 136 5-154 170-313 (439)
37 COG0465 HflB ATP-dependent Zn 99.9 1.1E-22 2.3E-27 201.7 12.4 147 199-375 138-284 (596)
38 KOG0727|consensus 99.9 1.1E-23 2.5E-28 184.4 1.9 133 5-146 193-329 (408)
39 TIGR03345 VI_ClpV1 type VI sec 99.9 1.4E-21 3E-26 205.7 16.1 75 2-78 209-295 (852)
40 PRK10865 protein disaggregatio 99.9 4.1E-21 8.9E-26 202.7 17.5 74 2-78 200-286 (857)
41 KOG0729|consensus 99.9 3.6E-23 7.7E-28 182.6 1.5 141 5-156 215-364 (435)
42 COG0465 HflB ATP-dependent Zn 99.9 6.5E-23 1.4E-27 203.2 2.4 152 5-169 187-346 (596)
43 KOG0735|consensus 99.9 3E-23 6.5E-28 203.7 -0.7 134 5-150 705-842 (952)
44 KOG0731|consensus 99.8 1.4E-22 2.9E-27 204.2 0.8 143 5-156 348-498 (774)
45 PLN00020 ribulose bisphosphate 99.8 2.2E-22 4.7E-27 187.6 1.7 74 5-81 152-230 (413)
46 KOG0726|consensus 99.8 2.5E-22 5.4E-27 179.3 0.8 153 5-169 223-382 (440)
47 KOG0652|consensus 99.8 2.6E-22 5.7E-27 176.7 0.9 155 5-171 209-370 (424)
48 COG1223 Predicted ATPase (AAA+ 99.8 6.1E-22 1.3E-26 174.3 2.1 134 4-150 154-291 (368)
49 TIGR01241 FtsH_fam ATP-depende 99.8 1.1E-20 2.3E-25 189.7 11.3 144 203-376 47-190 (495)
50 KOG0737|consensus 99.8 7.1E-21 1.5E-25 175.8 9.0 137 207-375 88-225 (386)
51 TIGR03346 chaperone_ClpB ATP-d 99.8 6.5E-21 1.4E-25 201.9 9.9 74 2-78 195-281 (852)
52 COG0464 SpoVK ATPases of the A 99.8 3.3E-21 7.1E-26 193.8 2.4 138 5-154 280-424 (494)
53 KOG0732|consensus 99.8 1.3E-21 2.8E-26 202.1 -0.6 307 5-349 303-669 (1080)
54 KOG0651|consensus 99.8 8.3E-21 1.8E-25 171.0 4.0 142 5-155 170-318 (388)
55 CHL00195 ycf46 Ycf46; Provisio 99.8 1.5E-19 3.2E-24 178.8 12.0 135 206-374 223-357 (489)
56 CHL00176 ftsH cell division pr 99.8 1.5E-19 3.3E-24 184.1 12.2 142 205-376 177-318 (638)
57 COG0466 Lon ATP-dependent Lon 99.8 5.8E-20 1.3E-24 182.0 8.7 225 103-364 183-453 (782)
58 KOG0741|consensus 99.8 8.5E-20 1.8E-24 174.5 8.3 150 206-377 214-367 (744)
59 TIGR01243 CDC48 AAA family ATP 99.8 2.4E-19 5.1E-24 188.0 12.0 138 205-374 172-309 (733)
60 COG1126 GlnQ ABC-type polar am 99.8 1.3E-19 2.8E-24 156.4 7.8 130 238-377 21-188 (240)
61 PLN00020 ribulose bisphosphate 99.8 5.8E-19 1.3E-23 164.8 10.3 108 240-373 143-250 (413)
62 COG1116 TauB ABC-type nitrate/ 99.8 3.9E-19 8.5E-24 157.5 7.6 125 238-372 22-177 (248)
63 KOG0740|consensus 99.8 8.5E-19 1.9E-23 167.4 9.2 146 196-374 138-283 (428)
64 KOG0737|consensus 99.8 6.3E-20 1.4E-24 169.5 0.2 72 5-79 131-202 (386)
65 COG1120 FepC ABC-type cobalami 99.8 1.4E-18 3E-23 156.7 7.9 126 238-374 21-187 (258)
66 COG2884 FtsE Predicted ATPase 99.8 1.6E-18 3.5E-23 146.4 7.4 131 238-378 21-190 (223)
67 KOG0732|consensus 99.8 2.4E-18 5.2E-23 178.1 10.1 139 206-376 260-403 (1080)
68 KOG0740|consensus 99.7 3.5E-19 7.7E-24 170.1 3.2 131 5-146 190-323 (428)
69 COG1121 ZnuC ABC-type Mn/Zn tr 99.7 1.7E-18 3.7E-23 155.4 6.3 130 238-377 23-191 (254)
70 CHL00195 ycf46 Ycf46; Provisio 99.7 6.6E-19 1.4E-23 174.2 2.7 131 5-146 263-395 (489)
71 CHL00206 ycf2 Ycf2; Provisiona 99.7 3.2E-19 7E-24 192.0 -0.3 129 5-144 1634-1805(2281)
72 COG1131 CcmA ABC-type multidru 99.7 1.1E-17 2.3E-22 156.6 7.8 128 238-375 24-186 (293)
73 COG1127 Ttg2A ABC-type transpo 99.7 1.4E-17 3.1E-22 145.9 7.9 126 238-373 27-193 (263)
74 COG1136 SalX ABC-type antimicr 99.7 1.3E-17 2.8E-22 147.6 7.3 127 238-374 24-191 (226)
75 COG4555 NatA ABC-type Na+ tran 99.7 2.8E-17 6E-22 140.2 8.7 129 238-376 21-184 (245)
76 PTZ00454 26S protease regulato 99.7 1.5E-18 3.3E-23 168.1 0.6 141 5-154 183-330 (398)
77 PRK10733 hflB ATP-dependent me 99.7 5.1E-17 1.1E-21 167.2 11.5 139 208-376 149-287 (644)
78 PTZ00361 26 proteosome regulat 99.7 3.7E-18 8E-23 166.6 2.8 140 5-153 221-367 (438)
79 COG4152 ABC-type uncharacteriz 99.7 4.4E-17 9.6E-22 142.8 8.6 129 238-377 21-182 (300)
80 PRK03992 proteasome-activating 99.7 4E-18 8.7E-23 165.8 0.8 140 5-153 169-315 (389)
81 KOG2004|consensus 99.7 6.5E-17 1.4E-21 159.8 8.8 150 161-347 343-519 (906)
82 PRK13537 nodulation ABC transp 99.7 6.6E-17 1.4E-21 152.5 8.0 130 238-377 26-190 (306)
83 TIGR01188 drrA daunorubicin re 99.7 7.8E-17 1.7E-21 152.0 8.1 130 238-377 12-176 (302)
84 COG3842 PotA ABC-type spermidi 99.7 4.6E-17 1E-21 153.2 6.0 125 238-372 24-183 (352)
85 cd03214 ABC_Iron-Siderophores_ 99.7 9.1E-17 2E-21 140.1 7.4 124 238-373 18-145 (180)
86 COG1124 DppF ABC-type dipeptid 99.7 1.4E-16 3E-21 140.2 8.3 127 238-374 26-190 (252)
87 COG3839 MalK ABC-type sugar tr 99.7 4.4E-17 9.5E-22 152.6 5.4 126 238-373 22-181 (338)
88 TIGR01241 FtsH_fam ATP-depende 99.7 9.3E-18 2E-22 168.5 0.9 138 5-152 92-237 (495)
89 TIGR03689 pup_AAA proteasome A 99.7 1.7E-17 3.7E-22 164.1 2.7 131 5-147 220-369 (512)
90 KOG1051|consensus 99.7 1.4E-15 3E-20 156.9 16.6 75 2-78 209-295 (898)
91 COG1135 AbcC ABC-type metal io 99.7 1E-16 2.2E-21 145.4 7.0 126 238-373 25-189 (339)
92 PRK13536 nodulation factor exp 99.7 1.5E-16 3.2E-21 151.9 8.0 130 238-377 60-224 (340)
93 TIGR00960 3a0501s02 Type II (G 99.7 2E-16 4.3E-21 142.1 8.0 129 238-376 22-189 (216)
94 COG1117 PstB ABC-type phosphat 99.7 3E-16 6.5E-21 135.2 8.3 125 238-373 26-197 (253)
95 cd03226 ABC_cobalt_CbiO_domain 99.7 2.1E-16 4.6E-21 140.7 7.7 129 238-376 19-177 (205)
96 COG1125 OpuBA ABC-type proline 99.7 1.8E-16 3.8E-21 140.0 6.9 125 238-372 20-182 (309)
97 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.6 2E-16 4.3E-21 142.3 7.2 126 238-373 23-188 (218)
98 COG1118 CysA ABC-type sulfate/ 99.6 2.1E-16 4.6E-21 143.1 7.0 126 238-373 21-185 (345)
99 TIGR01166 cbiO cobalt transpor 99.6 3.6E-16 7.9E-21 137.5 8.1 129 238-376 11-178 (190)
100 cd03269 ABC_putative_ATPase Th 99.6 4.3E-16 9.4E-21 139.2 8.1 128 238-375 19-178 (210)
101 COG3638 ABC-type phosphate/pho 99.6 3.7E-16 8.1E-21 136.7 7.4 126 238-373 23-195 (258)
102 COG1122 CbiO ABC-type cobalt t 99.6 5E-16 1.1E-20 139.9 8.5 126 238-374 23-187 (235)
103 TIGR02314 ABC_MetN D-methionin 99.6 3.3E-16 7.1E-21 149.4 7.7 126 238-373 24-188 (343)
104 cd03259 ABC_Carb_Solutes_like 99.6 3.2E-16 6.9E-21 140.4 7.1 126 238-373 19-178 (213)
105 COG0410 LivF ABC-type branched 99.6 3.3E-16 7.2E-21 136.9 6.7 127 238-374 22-185 (237)
106 TIGR02673 FtsE cell division A 99.6 4.6E-16 9.9E-21 139.5 7.8 129 238-376 21-188 (214)
107 PRK11650 ugpC glycerol-3-phosp 99.6 3.1E-16 6.7E-21 150.6 7.1 126 238-373 23-182 (356)
108 cd03293 ABC_NrtD_SsuB_transpor 99.6 3.2E-16 6.8E-21 141.2 6.8 125 238-372 23-178 (220)
109 TIGR01288 nodI ATP-binding ABC 99.6 4.7E-16 1E-20 146.7 7.7 129 238-376 23-186 (303)
110 TIGR03608 L_ocin_972_ABC putat 99.6 5.1E-16 1.1E-20 138.3 7.5 129 238-376 17-185 (206)
111 cd03268 ABC_BcrA_bacitracin_re 99.6 6.6E-16 1.4E-20 137.8 8.2 129 238-376 19-177 (208)
112 cd03225 ABC_cobalt_CbiO_domain 99.6 4.2E-16 9E-21 139.4 6.7 129 238-376 20-185 (211)
113 cd03266 ABC_NatA_sodium_export 99.6 6E-16 1.3E-20 139.1 7.6 129 238-376 24-187 (218)
114 cd03265 ABC_DrrA DrrA is the A 99.6 6.4E-16 1.4E-20 139.2 7.8 126 238-373 19-179 (220)
115 cd03292 ABC_FtsE_transporter F 99.6 6.2E-16 1.3E-20 138.6 7.6 129 238-376 20-187 (214)
116 cd03218 ABC_YhbG The ABC trans 99.6 7.5E-16 1.6E-20 139.8 8.0 129 238-376 19-184 (232)
117 cd03261 ABC_Org_Solvent_Resist 99.6 7E-16 1.5E-20 140.3 7.7 126 238-373 19-184 (235)
118 cd03301 ABC_MalK_N The N-termi 99.6 4.9E-16 1.1E-20 139.2 6.3 126 238-373 19-178 (213)
119 PRK11248 tauB taurine transpor 99.6 7.4E-16 1.6E-20 141.8 7.5 124 238-371 20-174 (255)
120 TIGR03522 GldA_ABC_ATP gliding 99.6 9.4E-16 2E-20 144.5 8.1 126 238-373 21-181 (301)
121 PRK11629 lolD lipoprotein tran 99.6 8.9E-16 1.9E-20 139.5 7.6 126 238-373 28-193 (233)
122 TIGR03265 PhnT2 putative 2-ami 99.6 9E-16 2E-20 147.3 8.0 126 238-373 23-182 (353)
123 PRK13538 cytochrome c biogenes 99.6 9.6E-16 2.1E-20 136.4 7.6 128 238-375 20-179 (204)
124 TIGR02211 LolD_lipo_ex lipopro 99.6 8.2E-16 1.8E-20 138.5 7.2 126 238-373 24-189 (221)
125 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.6 1E-15 2.2E-20 138.2 7.8 128 238-375 41-192 (224)
126 PRK11432 fbpC ferric transport 99.6 7.6E-16 1.6E-20 147.6 7.2 126 238-373 25-184 (351)
127 TIGR00763 lon ATP-dependent pr 99.6 1.5E-15 3.3E-20 159.8 9.8 152 160-348 251-429 (775)
128 PF00004 AAA: ATPase family as 99.6 1.7E-15 3.8E-20 124.6 8.0 72 5-79 2-74 (132)
129 cd03224 ABC_TM1139_LivF_branch 99.6 1.3E-15 2.7E-20 137.4 7.8 129 238-376 19-183 (222)
130 TIGR01189 ccmA heme ABC export 99.6 1.5E-15 3.1E-20 134.6 8.0 129 238-376 19-178 (198)
131 cd03262 ABC_HisP_GlnQ_permease 99.6 1.2E-15 2.6E-20 136.7 7.5 129 238-376 19-186 (213)
132 cd03231 ABC_CcmA_heme_exporter 99.6 1.3E-15 2.8E-20 135.3 7.6 129 238-376 19-176 (201)
133 PRK11153 metN DL-methionine tr 99.6 1.1E-15 2.3E-20 146.5 7.6 126 238-373 24-188 (343)
134 CHL00176 ftsH cell division pr 99.6 2.2E-16 4.8E-21 161.0 3.0 141 5-154 220-367 (638)
135 cd03258 ABC_MetN_methionine_tr 99.6 1.2E-15 2.6E-20 138.7 7.3 126 238-373 24-188 (233)
136 TIGR01186 proV glycine betaine 99.6 1.1E-15 2.4E-20 146.6 7.3 126 238-373 12-177 (363)
137 PRK10908 cell division protein 99.6 1.5E-15 3.3E-20 136.9 7.8 128 238-375 21-187 (222)
138 cd03263 ABC_subfamily_A The AB 99.6 1.6E-15 3.5E-20 136.5 7.9 126 238-373 21-181 (220)
139 PRK11247 ssuB aliphatic sulfon 99.6 1.2E-15 2.7E-20 140.3 7.2 125 238-372 31-180 (257)
140 PRK11000 maltose/maltodextrin 99.6 9.3E-16 2E-20 148.2 6.7 126 238-373 22-181 (369)
141 cd03219 ABC_Mj1267_LivG_branch 99.6 1.6E-15 3.5E-20 138.0 7.9 129 238-376 19-194 (236)
142 PRK09536 btuD corrinoid ABC tr 99.6 1.1E-15 2.3E-20 148.5 7.1 129 238-376 22-190 (402)
143 PRK13540 cytochrome c biogenes 99.6 1.8E-15 3.9E-20 134.2 7.9 128 238-375 20-177 (200)
144 TIGR03864 PQQ_ABC_ATP ABC tran 99.6 1.8E-15 3.9E-20 137.8 8.0 125 238-372 20-179 (236)
145 PRK13541 cytochrome c biogenes 99.6 1.9E-15 4.1E-20 133.5 8.0 129 238-376 19-174 (195)
146 TIGR03258 PhnT 2-aminoethylpho 99.6 1.4E-15 3.1E-20 146.2 7.6 127 238-374 24-186 (362)
147 COG4559 ABC-type hemin transpo 99.6 2.2E-15 4.8E-20 129.6 7.9 128 238-375 20-191 (259)
148 PRK10733 hflB ATP-dependent me 99.6 1.3E-16 2.9E-21 164.2 0.4 142 5-155 189-337 (644)
149 PRK09452 potA putrescine/sperm 99.6 1.3E-15 2.9E-20 146.9 7.2 126 238-373 33-192 (375)
150 TIGR01184 ntrCD nitrate transp 99.6 1.4E-15 3.1E-20 137.9 6.9 126 238-373 4-162 (230)
151 COG4619 ABC-type uncharacteriz 99.6 2.2E-15 4.7E-20 125.0 7.3 125 238-372 22-180 (223)
152 CHL00181 cbbX CbbX; Provisiona 99.6 2.5E-15 5.4E-20 140.1 8.7 106 211-349 23-138 (287)
153 PRK11124 artP arginine transpo 99.6 2E-15 4.3E-20 138.0 7.8 129 238-376 21-192 (242)
154 COG4525 TauB ABC-type taurine 99.6 2.3E-15 5E-20 127.9 7.6 124 238-371 24-178 (259)
155 cd03296 ABC_CysA_sulfate_impor 99.6 1.5E-15 3.3E-20 138.5 7.0 126 238-373 21-184 (239)
156 COG0488 Uup ATPase components 99.6 1.9E-14 4.2E-19 143.6 15.4 125 238-373 341-487 (530)
157 TIGR02315 ABC_phnC phosphonate 99.6 1.6E-15 3.4E-20 138.7 7.1 125 238-372 21-192 (243)
158 cd03246 ABCC_Protease_Secretio 99.6 5E-16 1.1E-20 134.5 3.5 120 238-376 21-147 (173)
159 cd03216 ABC_Carb_Monos_I This 99.6 4.9E-16 1.1E-20 133.2 3.3 111 238-376 19-133 (163)
160 cd03235 ABC_Metallic_Cations A 99.6 2.5E-15 5.5E-20 134.6 8.0 129 238-376 18-183 (213)
161 PRK10851 sulfate/thiosulfate t 99.6 1.8E-15 3.9E-20 145.2 7.4 126 238-373 21-184 (353)
162 PRK13641 cbiO cobalt transport 99.6 2.1E-15 4.5E-20 141.2 7.6 130 238-377 26-197 (287)
163 PRK11264 putative amino-acid A 99.6 2.6E-15 5.5E-20 137.9 8.0 129 238-376 22-195 (250)
164 PRK13539 cytochrome c biogenes 99.6 2.4E-15 5.1E-20 134.2 7.5 129 238-376 21-178 (207)
165 cd03256 ABC_PhnC_transporter A 99.6 1.9E-15 4.1E-20 138.0 7.0 125 238-372 20-191 (241)
166 cd03215 ABC_Carb_Monos_II This 99.6 2.7E-15 5.9E-20 131.0 7.6 114 238-376 19-155 (182)
167 PRK09493 glnQ glutamine ABC tr 99.6 2.3E-15 5E-20 137.4 7.4 129 238-376 20-187 (240)
168 cd03295 ABC_OpuCA_Osmoprotecti 99.6 2.3E-15 5E-20 137.6 7.4 126 238-373 20-183 (242)
169 cd03264 ABC_drug_resistance_li 99.6 3.1E-15 6.6E-20 133.8 7.9 125 238-373 19-178 (211)
170 PRK10584 putative ABC transpor 99.6 2.4E-15 5.3E-20 136.1 7.2 125 238-372 29-193 (228)
171 TIGR02880 cbbX_cfxQ probable R 99.6 4.3E-15 9.3E-20 138.5 9.1 105 212-349 23-137 (284)
172 PRK11607 potG putrescine trans 99.6 2.4E-15 5.3E-20 145.3 7.7 125 238-372 38-196 (377)
173 COG3840 ThiQ ABC-type thiamine 99.6 2.9E-15 6.4E-20 125.9 7.1 128 237-374 17-178 (231)
174 PRK13647 cbiO cobalt transport 99.6 3.1E-15 6.7E-20 139.2 8.0 129 238-376 24-189 (274)
175 TIGR03740 galliderm_ABC gallid 99.6 3.1E-15 6.8E-20 134.9 7.9 128 238-375 19-174 (223)
176 TIGR03410 urea_trans_UrtE urea 99.6 3.1E-15 6.7E-20 135.6 7.9 126 238-373 19-179 (230)
177 TIGR02881 spore_V_K stage V sp 99.6 6.5E-15 1.4E-19 136.0 10.0 126 210-374 5-140 (261)
178 PRK13543 cytochrome c biogenes 99.6 3.6E-15 7.7E-20 133.7 8.0 129 238-376 30-188 (214)
179 cd03294 ABC_Pro_Gly_Bertaine T 99.6 2.1E-15 4.6E-20 139.9 6.7 125 238-372 43-207 (269)
180 PRK13638 cbiO cobalt transport 99.6 3E-15 6.5E-20 139.1 7.7 129 238-376 20-187 (271)
181 PRK10895 lipopolysaccharide AB 99.6 2.8E-15 6E-20 136.9 7.4 129 238-376 22-188 (241)
182 cd03298 ABC_ThiQ_thiamine_tran 99.6 2.3E-15 5E-20 134.6 6.7 125 238-372 17-175 (211)
183 cd03237 ABC_RNaseL_inhibitor_d 99.6 4.2E-15 9.1E-20 135.9 8.4 124 239-372 19-162 (246)
184 cd03230 ABC_DR_subfamily_A Thi 99.6 3.2E-15 7E-20 129.5 7.1 119 238-376 19-146 (173)
185 PRK13637 cbiO cobalt transport 99.6 3.1E-15 6.6E-20 140.1 7.5 126 238-373 26-192 (287)
186 TIGR02142 modC_ABC molybdenum 99.6 2.8E-15 6.2E-20 144.3 7.4 126 238-373 16-179 (354)
187 PRK11300 livG leucine/isoleuci 99.6 3.4E-15 7.3E-20 137.5 7.5 126 238-373 24-201 (255)
188 PRK11144 modC molybdate transp 99.6 2.6E-15 5.7E-20 144.3 7.0 126 238-373 17-176 (352)
189 PRK10070 glycine betaine trans 99.6 3.1E-15 6.6E-20 145.3 7.4 125 238-372 47-211 (400)
190 cd03228 ABCC_MRP_Like The MRP 99.6 1.2E-15 2.6E-20 131.9 4.0 115 238-373 21-144 (171)
191 PRK13644 cbiO cobalt transport 99.6 4E-15 8.6E-20 138.4 7.7 130 238-377 21-188 (274)
192 cd03233 ABC_PDR_domain1 The pl 99.6 4.2E-15 9.1E-20 132.0 7.5 120 238-373 26-166 (202)
193 PRK11831 putative ABC transpor 99.6 3.4E-15 7.4E-20 138.5 7.1 126 238-373 26-191 (269)
194 PRK13650 cbiO cobalt transport 99.6 4.1E-15 8.8E-20 138.7 7.6 126 238-373 26-188 (279)
195 cd03247 ABCC_cytochrome_bd The 99.6 4.7E-15 1E-19 129.1 7.2 117 238-372 21-145 (178)
196 PRK13635 cbiO cobalt transport 99.6 5.4E-15 1.2E-19 137.9 8.1 127 238-374 26-189 (279)
197 PRK13649 cbiO cobalt transport 99.6 4.3E-15 9.4E-20 138.7 7.4 129 238-376 26-196 (280)
198 cd03223 ABCD_peroxisomal_ALDP 99.6 4.8E-15 1.1E-19 127.5 7.1 110 238-371 20-137 (166)
199 PRK10787 DNA-binding ATP-depen 99.6 3.6E-15 7.9E-20 155.8 7.5 152 160-348 253-431 (784)
200 cd03213 ABCG_EPDR ABCG transpo 99.6 6.4E-15 1.4E-19 130.0 8.0 117 238-376 28-162 (194)
201 COG4608 AppF ABC-type oligopep 99.6 4.2E-15 9E-20 133.7 6.8 123 238-374 32-158 (268)
202 PF00004 AAA: ATPase family as 99.6 1.8E-14 3.8E-19 118.5 10.1 96 248-375 1-97 (132)
203 TIGR03411 urea_trans_UrtD urea 99.6 9.4E-15 2E-19 133.5 9.3 126 238-373 21-191 (242)
204 PRK13632 cbiO cobalt transport 99.6 4.1E-15 9E-20 138.1 7.0 127 238-374 28-191 (271)
205 PRK13646 cbiO cobalt transport 99.6 5.4E-15 1.2E-19 138.4 7.8 126 238-373 26-193 (286)
206 PRK11614 livF leucine/isoleuci 99.6 4.8E-15 1E-19 135.0 7.1 130 238-377 24-189 (237)
207 cd03222 ABC_RNaseL_inhibitor T 99.6 5.5E-15 1.2E-19 127.9 6.8 97 239-373 19-119 (177)
208 cd03260 ABC_PstB_phosphate_tra 99.6 6.4E-15 1.4E-19 133.3 7.5 126 238-373 19-189 (227)
209 PRK11231 fecE iron-dicitrate t 99.6 4.9E-15 1.1E-19 136.5 6.8 129 238-376 21-189 (255)
210 PRK13546 teichoic acids export 99.6 5.8E-15 1.2E-19 136.4 7.3 129 238-376 43-194 (264)
211 PRK13643 cbiO cobalt transport 99.6 5.9E-15 1.3E-19 138.2 7.5 130 238-377 25-196 (288)
212 PRK13639 cbiO cobalt transport 99.6 8.2E-15 1.8E-19 136.4 8.4 129 238-376 21-188 (275)
213 PRK13651 cobalt transporter AT 99.6 6E-15 1.3E-19 139.0 7.5 130 238-377 26-217 (305)
214 cd03267 ABC_NatA_like Similar 99.6 6.8E-15 1.5E-19 133.9 7.6 126 238-373 40-201 (236)
215 cd03257 ABC_NikE_OppD_transpor 99.6 5.5E-15 1.2E-19 133.7 6.9 126 238-373 24-193 (228)
216 TIGR03771 anch_rpt_ABC anchore 99.6 1.2E-14 2.5E-19 131.2 8.9 127 240-376 1-164 (223)
217 PRK14250 phosphate ABC transpo 99.6 7.3E-15 1.6E-19 134.2 7.7 126 238-373 22-179 (241)
218 PRK13548 hmuV hemin importer A 99.6 4.9E-15 1.1E-19 136.7 6.5 125 238-372 21-187 (258)
219 PRK10619 histidine/lysine/argi 99.6 6.7E-15 1.5E-19 135.7 7.4 129 238-376 24-203 (257)
220 KOG0744|consensus 99.6 2.5E-15 5.3E-20 136.6 4.2 144 209-376 140-294 (423)
221 PRK13645 cbiO cobalt transport 99.6 7E-15 1.5E-19 137.9 7.5 126 238-373 30-198 (289)
222 COG1137 YhbG ABC-type (unclass 99.6 1.3E-15 2.8E-20 129.9 2.3 128 238-375 23-189 (243)
223 TIGR03005 ectoine_ehuA ectoine 99.5 7.3E-15 1.6E-19 135.1 7.4 126 238-373 19-194 (252)
224 cd03297 ABC_ModC_molybdenum_tr 99.5 5.8E-15 1.3E-19 132.4 6.4 124 238-372 17-178 (214)
225 PRK13631 cbiO cobalt transport 99.5 7.8E-15 1.7E-19 139.1 7.6 130 238-377 45-228 (320)
226 TIGR01277 thiQ thiamine ABC tr 99.5 6.1E-15 1.3E-19 132.1 6.5 125 238-372 17-175 (213)
227 cd03229 ABC_Class3 This class 99.5 2.4E-15 5.1E-20 130.9 3.6 120 238-374 19-149 (178)
228 PRK10771 thiQ thiamine transpo 99.5 7.8E-15 1.7E-19 133.2 7.1 126 238-373 18-177 (232)
229 cd03232 ABC_PDR_domain2 The pl 99.5 1.1E-14 2.4E-19 128.3 7.8 117 238-376 26-159 (192)
230 PRK10575 iron-hydroxamate tran 99.5 6.4E-15 1.4E-19 136.4 6.6 126 238-373 30-195 (265)
231 PRK15112 antimicrobial peptide 99.5 8.3E-15 1.8E-19 135.8 7.3 126 238-373 32-197 (267)
232 cd03234 ABCG_White The White s 99.5 9.2E-15 2E-19 132.2 7.5 129 238-376 26-194 (226)
233 PRK13634 cbiO cobalt transport 99.5 9.4E-15 2E-19 137.0 7.7 126 238-373 26-193 (290)
234 cd03252 ABCC_Hemolysin The ABC 99.5 1.4E-14 3.1E-19 131.9 8.7 126 238-373 21-186 (237)
235 PRK13652 cbiO cobalt transport 99.5 7.9E-15 1.7E-19 136.7 7.0 126 238-373 23-185 (277)
236 PRK09544 znuC high-affinity zi 99.5 1.1E-14 2.5E-19 133.5 8.0 126 238-373 23-168 (251)
237 PRK10253 iron-enterobactin tra 99.5 7.1E-15 1.5E-19 136.1 6.7 126 238-373 26-191 (265)
238 COG4586 ABC-type uncharacteriz 99.5 1.3E-14 2.7E-19 129.5 7.8 127 238-374 43-205 (325)
239 PRK13648 cbiO cobalt transport 99.5 1.1E-14 2.3E-19 135.3 7.8 126 238-373 28-190 (269)
240 cd03300 ABC_PotA_N PotA is an 99.5 1.1E-14 2.3E-19 132.3 7.5 126 238-373 19-178 (232)
241 PRK15056 manganese/iron transp 99.5 1E-14 2.2E-19 135.6 7.6 129 238-376 26-193 (272)
242 TIGR03415 ABC_choXWV_ATP choli 99.5 1E-14 2.3E-19 140.6 7.8 126 238-373 43-212 (382)
243 TIGR03873 F420-0_ABC_ATP propo 99.5 8.2E-15 1.8E-19 135.0 6.8 129 238-376 20-188 (256)
244 cd03251 ABCC_MsbA MsbA is an e 99.5 1.7E-14 3.7E-19 131.1 8.7 126 238-373 21-186 (234)
245 TIGR01242 26Sp45 26S proteasom 99.5 7.6E-16 1.6E-20 149.0 -0.2 73 5-80 160-232 (364)
246 COG0411 LivG ABC-type branched 99.5 3.7E-15 8.1E-20 131.4 4.2 127 238-374 23-198 (250)
247 PRK15439 autoinducer 2 ABC tra 99.5 1E-14 2.2E-19 147.3 7.8 129 238-376 30-191 (510)
248 cd03248 ABCC_TAP TAP, the Tran 99.5 1.6E-14 3.5E-19 130.6 8.4 126 238-373 33-198 (226)
249 CHL00206 ycf2 Ycf2; Provisiona 99.5 1E-14 2.3E-19 157.8 8.2 100 238-375 1623-1765(2281)
250 cd03238 ABC_UvrA The excision 99.5 1.2E-14 2.6E-19 125.7 7.1 117 238-376 14-140 (176)
251 PRK13633 cobalt transporter AT 99.5 1E-14 2.2E-19 136.2 7.1 126 238-373 29-192 (280)
252 PRK13636 cbiO cobalt transport 99.5 1.1E-14 2.4E-19 136.0 7.5 126 238-373 25-189 (283)
253 TIGR02769 nickel_nikE nickel i 99.5 1.3E-14 2.8E-19 134.4 7.6 126 238-373 30-198 (265)
254 cd03299 ABC_ModC_like Archeal 99.5 1.1E-14 2.4E-19 132.4 6.9 126 238-373 18-177 (235)
255 PRK09700 D-allose transporter 99.5 1.3E-14 2.9E-19 146.6 8.1 129 238-376 24-196 (510)
256 cd03217 ABC_FeS_Assembly ABC-t 99.5 1.3E-14 2.8E-19 128.7 7.1 128 238-375 19-154 (200)
257 cd03253 ABCC_ATM1_transporter 99.5 2.2E-14 4.8E-19 130.5 8.7 128 238-376 20-187 (236)
258 PRK10762 D-ribose transporter 99.5 1.2E-14 2.6E-19 146.6 7.6 129 238-376 23-192 (501)
259 cd03254 ABCC_Glucan_exporter_l 99.5 2.3E-14 5.1E-19 129.8 8.8 125 238-372 22-186 (229)
260 PRK09984 phosphonate/organopho 99.5 1.1E-14 2.5E-19 134.6 6.8 126 238-373 23-200 (262)
261 TIGR02770 nickel_nikD nickel i 99.5 1.3E-14 2.9E-19 131.5 7.1 126 238-373 5-173 (230)
262 cd03244 ABCC_MRP_domain2 Domai 99.5 2.6E-14 5.6E-19 128.7 8.8 126 238-373 23-187 (221)
263 PRK10938 putative molybdenum t 99.5 1.3E-14 2.7E-19 146.1 7.4 129 238-376 22-186 (490)
264 PRK13640 cbiO cobalt transport 99.5 1.7E-14 3.7E-19 134.8 7.7 126 238-373 26-191 (282)
265 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.5 2.6E-14 5.7E-19 130.2 8.8 125 238-372 22-186 (238)
266 TIGR01978 sufC FeS assembly AT 99.5 1.7E-14 3.7E-19 131.8 7.5 129 238-376 19-195 (243)
267 PRK10247 putative ABC transpor 99.5 1.5E-14 3.2E-19 130.7 7.0 125 238-372 26-184 (225)
268 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.5 2.1E-14 4.6E-19 120.5 7.2 94 238-371 19-116 (144)
269 PRK03695 vitamin B12-transport 99.5 1.5E-14 3.2E-19 132.7 6.8 129 238-376 15-184 (248)
270 COG4133 CcmA ABC-type transpor 99.5 4.7E-14 1E-18 119.4 8.9 122 239-370 22-175 (209)
271 TIGR02324 CP_lyasePhnL phospho 99.5 2.3E-14 5.1E-19 129.3 7.7 130 238-377 27-201 (224)
272 cd03245 ABCC_bacteriocin_expor 99.5 1.7E-14 3.8E-19 129.8 6.7 126 238-373 23-188 (220)
273 PRK13545 tagH teichoic acids e 99.5 1.7E-14 3.6E-19 142.4 7.0 129 238-376 43-194 (549)
274 TIGR00968 3a0106s01 sulfate AB 99.5 1.9E-14 4.1E-19 131.1 6.9 126 238-373 19-178 (237)
275 PRK14247 phosphate ABC transpo 99.5 3.1E-14 6.6E-19 130.8 8.0 126 238-373 22-194 (250)
276 PRK15079 oligopeptide ABC tran 99.5 1.7E-14 3.7E-19 137.4 6.5 126 238-373 40-209 (331)
277 PRK13549 xylose transporter AT 99.5 2.3E-14 5E-19 144.7 7.7 129 238-376 24-194 (506)
278 PRK13642 cbiO cobalt transport 99.5 2.4E-14 5.2E-19 133.4 7.2 126 238-373 26-188 (277)
279 PRK10982 galactose/methyl gala 99.5 2.6E-14 5.6E-19 143.9 7.8 129 238-376 17-185 (491)
280 COG2274 SunT ABC-type bacterio 99.5 3.4E-14 7.4E-19 146.3 8.8 127 238-374 492-658 (709)
281 TIGR02323 CP_lyasePhnK phospho 99.5 3E-14 6.6E-19 131.0 7.5 125 238-372 22-195 (253)
282 COG1119 ModF ABC-type molybden 99.5 5.1E-14 1.1E-18 124.3 8.4 126 239-374 51-220 (257)
283 TIGR00972 3a0107s01c2 phosphat 99.5 3.6E-14 7.7E-19 130.1 7.7 126 238-373 20-192 (247)
284 COG4148 ModC ABC-type molybdat 99.5 6.8E-15 1.5E-19 131.5 2.8 129 235-373 14-176 (352)
285 PRK11701 phnK phosphonate C-P 99.5 3.1E-14 6.7E-19 131.3 7.2 126 238-373 25-199 (258)
286 TIGR02982 heterocyst_DevA ABC 99.5 3.2E-14 7E-19 128.1 7.1 126 238-373 24-189 (220)
287 COG1123 ATPase components of v 99.5 3.2E-14 7E-19 139.9 7.5 126 238-373 310-477 (539)
288 COG4161 ArtP ABC-type arginine 99.5 8.3E-14 1.8E-18 114.9 8.5 129 239-377 22-193 (242)
289 PRK11308 dppF dipeptide transp 99.5 2.5E-14 5.5E-19 136.0 6.4 126 238-373 34-202 (327)
290 PRK14259 phosphate ABC transpo 99.5 5.8E-14 1.3E-18 130.3 8.6 126 238-373 32-202 (269)
291 PRK09700 D-allose transporter 99.5 2.8E-14 6.1E-19 144.3 7.0 129 238-376 282-460 (510)
292 cd03369 ABCC_NFT1 Domain 2 of 99.5 6.4E-14 1.4E-18 124.9 8.3 125 238-372 27-172 (207)
293 cd03250 ABCC_MRP_domain1 Domai 99.5 8.6E-14 1.9E-18 123.8 9.0 129 238-376 24-179 (204)
294 PRK11288 araG L-arabinose tran 99.5 4E-14 8.7E-19 142.8 7.7 130 238-377 272-448 (501)
295 PRK11288 araG L-arabinose tran 99.5 3.7E-14 8E-19 143.1 7.4 129 238-376 23-191 (501)
296 PRK13547 hmuV hemin importer A 99.5 3.4E-14 7.4E-19 131.8 6.6 126 238-373 20-202 (272)
297 PRK14241 phosphate transporter 99.5 4.9E-14 1.1E-18 130.0 7.5 125 238-372 23-195 (258)
298 CHL00131 ycf16 sulfate ABC tra 99.5 5.3E-14 1.1E-18 129.3 7.6 129 238-376 26-202 (252)
299 PRK14242 phosphate transporter 99.5 6.4E-14 1.4E-18 128.9 7.9 126 238-373 25-197 (253)
300 PRK11022 dppD dipeptide transp 99.5 5.7E-14 1.2E-18 133.6 7.7 126 238-373 26-201 (326)
301 PRK14268 phosphate ABC transpo 99.5 8.2E-14 1.8E-18 128.5 8.4 126 238-373 31-202 (258)
302 PRK14235 phosphate transporter 99.5 6.5E-14 1.4E-18 129.8 7.7 126 238-373 38-211 (267)
303 PRK10418 nikD nickel transport 99.5 7.4E-14 1.6E-18 128.5 7.9 125 238-372 22-187 (254)
304 KOG0744|consensus 99.5 4E-14 8.7E-19 128.8 5.9 81 5-85 181-272 (423)
305 PRK14273 phosphate ABC transpo 99.5 7.3E-14 1.6E-18 128.6 7.8 125 238-372 26-197 (254)
306 cd00267 ABC_ATPase ABC (ATP-bi 99.5 2.6E-14 5.7E-19 121.7 4.4 108 238-374 18-129 (157)
307 PRK14267 phosphate ABC transpo 99.5 8.3E-14 1.8E-18 128.1 8.1 126 238-373 23-197 (253)
308 PRK10762 D-ribose transporter 99.5 6.1E-14 1.3E-18 141.5 7.6 130 238-377 271-447 (501)
309 PRK15439 autoinducer 2 ABC tra 99.5 6.5E-14 1.4E-18 141.5 7.9 129 238-376 282-454 (510)
310 COG4598 HisP ABC-type histidin 99.5 1.3E-13 2.9E-18 115.7 8.2 129 239-377 26-204 (256)
311 PRK15177 Vi polysaccharide exp 99.5 1E-13 2.2E-18 124.2 8.1 122 238-369 6-148 (213)
312 PF05496 RuvB_N: Holliday junc 99.5 3.2E-13 6.9E-18 118.8 10.9 72 202-281 15-86 (233)
313 PRK10419 nikE nickel transport 99.5 6.2E-14 1.3E-18 130.0 6.7 126 238-373 31-199 (268)
314 PRK13409 putative ATPase RIL; 99.5 5.5E-14 1.2E-18 143.5 6.8 125 239-373 359-501 (590)
315 cd03290 ABCC_SUR1_N The SUR do 99.5 1.6E-13 3.6E-18 123.3 9.0 129 238-376 20-193 (218)
316 PRK15093 antimicrobial peptide 99.5 1.1E-13 2.3E-18 132.1 8.1 126 238-373 26-206 (330)
317 PRK14269 phosphate ABC transpo 99.5 9.9E-14 2.1E-18 127.1 7.6 126 238-373 21-190 (246)
318 PRK14263 phosphate ABC transpo 99.5 1.3E-13 2.8E-18 127.4 8.3 125 238-372 27-196 (261)
319 cd03236 ABC_RNaseL_inhibitor_d 99.5 1.9E-13 4.2E-18 125.5 9.1 124 242-375 23-189 (255)
320 PRK09473 oppD oligopeptide tra 99.5 1.1E-13 2.4E-18 131.8 7.7 126 238-373 35-209 (330)
321 COG4178 ABC-type uncharacteriz 99.5 1.4E-13 3E-18 137.2 8.5 123 238-370 412-560 (604)
322 PRK10744 pstB phosphate transp 99.5 1.1E-13 2.4E-18 127.8 7.3 125 238-372 32-203 (260)
323 PRK14251 phosphate ABC transpo 99.5 1.6E-13 3.5E-18 126.1 8.3 126 238-373 23-195 (251)
324 COG4175 ProV ABC-type proline/ 99.5 8.5E-14 1.9E-18 126.6 6.3 124 238-371 47-210 (386)
325 PRK14254 phosphate ABC transpo 99.5 1.3E-13 2.7E-18 129.0 7.6 126 238-373 58-228 (285)
326 TIGR01257 rim_protein retinal- 99.5 1E-13 2.2E-18 155.4 8.2 128 239-376 1959-2121(2272)
327 TIGR02868 CydC thiol reductant 99.5 1.2E-13 2.6E-18 140.3 8.1 124 239-372 355-517 (529)
328 PRK14265 phosphate ABC transpo 99.5 1.6E-13 3.5E-18 127.6 8.2 126 238-373 39-209 (274)
329 PRK14248 phosphate ABC transpo 99.5 1.3E-13 2.7E-18 128.0 7.4 126 238-373 40-212 (268)
330 TIGR03269 met_CoM_red_A2 methy 99.4 9.6E-14 2.1E-18 140.7 7.1 125 238-372 19-215 (520)
331 PRK11176 lipid transporter ATP 99.4 1.7E-13 3.7E-18 140.9 9.0 125 238-372 362-527 (582)
332 PRK14239 phosphate transporter 99.4 1.3E-13 2.9E-18 126.6 7.4 126 238-373 24-196 (252)
333 TIGR01187 potA spermidine/putr 99.4 1E-13 2.3E-18 131.9 6.8 114 250-373 1-148 (325)
334 TIGR02633 xylG D-xylose ABC tr 99.4 1.3E-13 2.9E-18 139.1 8.0 130 238-377 20-193 (500)
335 PRK14262 phosphate ABC transpo 99.4 2.1E-13 4.6E-18 125.2 8.7 126 238-373 22-194 (250)
336 PRK09580 sufC cysteine desulfu 99.4 2E-13 4.3E-18 125.2 8.4 130 238-377 20-197 (248)
337 TIGR02881 spore_V_K stage V sp 99.4 9.2E-14 2E-18 128.4 6.2 67 5-77 46-119 (261)
338 PRK14274 phosphate ABC transpo 99.4 1.8E-13 3.8E-18 126.4 8.1 126 238-373 31-203 (259)
339 COG3845 ABC-type uncharacteriz 99.4 1.1E-13 2.3E-18 133.0 6.7 130 238-377 23-192 (501)
340 PRK10261 glutathione transport 99.4 8.4E-14 1.8E-18 143.7 6.5 126 238-373 343-511 (623)
341 COG4988 CydD ABC-type transpor 99.4 2.5E-13 5.4E-18 133.3 9.3 127 238-374 340-505 (559)
342 cd03289 ABCC_CFTR2 The CFTR su 99.4 1.6E-13 3.4E-18 127.4 7.5 125 238-372 23-185 (275)
343 PRK14243 phosphate transporter 99.4 2.3E-13 5.1E-18 125.9 8.7 126 238-373 29-199 (264)
344 COG4181 Predicted ABC-type tra 99.4 1.6E-13 3.4E-18 114.4 6.7 126 239-374 30-195 (228)
345 CHL00181 cbbX CbbX; Provisiona 99.4 6.4E-14 1.4E-18 130.6 4.9 68 5-78 63-137 (287)
346 PRK14256 phosphate ABC transpo 99.4 1.7E-13 3.6E-18 126.0 7.6 126 238-373 23-196 (252)
347 PRK14244 phosphate ABC transpo 99.4 2.3E-13 5.1E-18 125.0 8.5 126 238-373 24-197 (251)
348 cd03288 ABCC_SUR2 The SUR doma 99.4 2.7E-13 5.9E-18 125.0 9.0 125 238-372 40-203 (257)
349 PRK13549 xylose transporter AT 99.4 1.8E-13 3.9E-18 138.2 8.4 130 238-377 281-457 (506)
350 PRK10636 putative ABC transpor 99.4 2.3E-13 4.9E-18 140.7 9.1 125 238-372 20-196 (638)
351 TIGR03797 NHPM_micro_ABC2 NHPM 99.4 2E-13 4.4E-18 142.8 8.7 123 239-371 473-634 (686)
352 PRK14237 phosphate transporter 99.4 2.2E-13 4.8E-18 126.3 8.0 126 238-373 39-211 (267)
353 PRK13409 putative ATPase RIL; 99.4 2.1E-13 4.6E-18 139.2 8.5 125 241-376 95-262 (590)
354 PRK11819 putative ABC transpor 99.4 2.2E-13 4.8E-18 139.0 8.7 124 238-372 26-210 (556)
355 PRK14260 phosphate ABC transpo 99.4 2.1E-13 4.6E-18 125.9 7.7 126 238-373 26-198 (259)
356 COG1245 Predicted ATPase, RNas 99.4 2E-13 4.3E-18 129.5 7.6 117 241-371 363-501 (591)
357 PRK14275 phosphate ABC transpo 99.4 2.6E-13 5.6E-18 127.0 8.4 126 238-373 58-230 (286)
358 PRK14270 phosphate ABC transpo 99.4 2.3E-13 5E-18 125.0 7.9 126 238-373 23-195 (251)
359 PRK14245 phosphate ABC transpo 99.4 2.5E-13 5.4E-18 124.7 8.1 125 238-372 22-193 (250)
360 PRK14240 phosphate transporter 99.4 2.4E-13 5.3E-18 124.8 7.9 126 238-373 22-194 (250)
361 PLN03211 ABC transporter G-25; 99.4 1.7E-13 3.7E-18 141.6 7.6 130 238-377 87-258 (659)
362 TIGR01257 rim_protein retinal- 99.4 1.7E-13 3.7E-18 153.7 8.0 124 239-372 950-1108(2272)
363 PRK14238 phosphate transporter 99.4 2.5E-13 5.4E-18 126.2 7.8 126 238-373 43-215 (271)
364 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 2.4E-13 5.3E-18 138.6 8.5 125 238-372 341-490 (552)
365 PRK14272 phosphate ABC transpo 99.4 2.7E-13 5.8E-18 124.6 7.9 126 238-373 23-196 (252)
366 TIGR02633 xylG D-xylose ABC tr 99.4 2.4E-13 5.1E-18 137.2 8.2 129 238-376 279-454 (500)
367 PRK15134 microcin C ABC transp 99.4 1.9E-13 4.1E-18 138.8 7.6 126 238-373 28-204 (529)
368 PRK14255 phosphate ABC transpo 99.4 2.2E-13 4.9E-18 125.2 7.4 126 238-373 24-196 (252)
369 TIGR01842 type_I_sec_PrtD type 99.4 2.7E-13 5.8E-18 138.2 8.7 128 238-375 337-504 (544)
370 PRK14249 phosphate ABC transpo 99.4 3E-13 6.5E-18 124.3 8.1 125 238-372 23-194 (251)
371 PRK14236 phosphate transporter 99.4 3.1E-13 6.8E-18 125.6 8.2 126 238-373 44-216 (272)
372 PRK11174 cysteine/glutathione 99.4 3.1E-13 6.7E-18 139.1 8.8 124 238-372 369-532 (588)
373 PRK15064 ABC transporter ATP-b 99.4 2.3E-13 5.1E-18 138.2 7.7 123 238-370 20-200 (530)
374 PRK14261 phosphate ABC transpo 99.4 4.3E-13 9.3E-18 123.4 8.7 126 238-373 25-197 (253)
375 PRK05342 clpX ATP-dependent pr 99.4 6.2E-13 1.4E-17 129.4 10.3 137 212-373 72-213 (412)
376 COG4604 CeuD ABC-type enteroch 99.4 8.4E-13 1.8E-17 112.6 9.6 124 238-372 20-182 (252)
377 PRK14253 phosphate ABC transpo 99.4 3.8E-13 8.2E-18 123.5 8.2 126 238-373 22-193 (249)
378 TIGR03269 met_CoM_red_A2 methy 99.4 2.5E-13 5.4E-18 137.7 7.6 125 238-372 303-474 (520)
379 PRK10982 galactose/methyl gala 99.4 2.5E-13 5.5E-18 136.7 7.6 129 239-377 268-443 (491)
380 PRK15134 microcin C ABC transp 99.4 1.8E-13 3.9E-18 139.0 6.3 126 238-373 305-473 (529)
381 PRK14271 phosphate ABC transpo 99.4 3.7E-13 8.1E-18 125.3 8.0 126 238-373 40-211 (276)
382 PRK10938 putative molybdenum t 99.4 4.4E-13 9.5E-18 135.0 8.8 128 238-375 279-451 (490)
383 COG4618 ArpD ABC-type protease 99.4 3.8E-13 8.2E-18 129.3 7.8 130 238-377 355-524 (580)
384 TIGR03796 NHPM_micro_ABC1 NHPM 99.4 4.4E-13 9.5E-18 140.9 9.0 122 239-370 499-660 (710)
385 PRK11160 cysteine/glutathione 99.4 4.6E-13 9.9E-18 137.2 8.9 125 238-372 359-522 (574)
386 PRK14257 phosphate ABC transpo 99.4 4.6E-13 1E-17 127.4 8.3 126 238-373 101-273 (329)
387 PRK11147 ABC transporter ATPas 99.4 3.2E-13 7E-18 139.8 7.8 123 239-372 339-487 (635)
388 PRK15064 ABC transporter ATP-b 99.4 2.9E-13 6.3E-18 137.5 7.3 125 238-372 338-485 (530)
389 PRK11819 putative ABC transpor 99.4 4.1E-13 8.9E-18 137.0 8.3 125 238-372 343-492 (556)
390 TIGR01193 bacteriocin_ABC ABC- 99.4 4.8E-13 1E-17 140.5 8.9 125 238-372 493-658 (708)
391 KOG0058|consensus 99.4 5.5E-13 1.2E-17 133.5 8.8 123 239-371 488-650 (716)
392 PRK10261 glutathione transport 99.4 2.4E-13 5.2E-18 140.3 6.4 126 238-373 35-216 (623)
393 COG1101 PhnK ABC-type uncharac 99.4 4.2E-13 9.1E-18 116.0 6.7 124 238-371 25-194 (263)
394 PRK14258 phosphate ABC transpo 99.4 5.4E-13 1.2E-17 123.3 8.0 125 238-372 26-197 (261)
395 PRK10790 putative multidrug tr 99.4 4.9E-13 1.1E-17 137.7 8.4 125 238-372 360-523 (592)
396 COG4778 PhnL ABC-type phosphon 99.4 5.1E-13 1.1E-17 111.2 6.8 129 238-376 30-203 (235)
397 PRK14246 phosphate ABC transpo 99.4 5E-13 1.1E-17 123.2 7.3 126 238-373 29-201 (257)
398 COG4987 CydC ABC-type transpor 99.4 7.8E-13 1.7E-17 128.2 8.9 123 239-371 358-520 (573)
399 PRK14264 phosphate ABC transpo 99.4 5E-13 1.1E-17 126.2 7.5 126 238-373 64-248 (305)
400 COG1129 MglA ABC-type sugar tr 99.4 8.1E-13 1.8E-17 129.2 9.1 129 238-376 27-196 (500)
401 PRK13657 cyclic beta-1,2-gluca 99.4 7.9E-13 1.7E-17 136.1 9.3 124 239-372 355-518 (588)
402 TIGR02857 CydD thiol reductant 99.4 8.3E-13 1.8E-17 134.2 9.2 125 238-372 341-505 (529)
403 TIGR01194 cyc_pep_trnsptr cycl 99.4 6.8E-13 1.5E-17 135.4 8.6 124 238-371 361-517 (555)
404 TIGR03375 type_I_sec_LssB type 99.4 7.2E-13 1.6E-17 138.9 8.9 125 238-372 484-648 (694)
405 PRK11147 ABC transporter ATPas 99.4 6.6E-13 1.4E-17 137.5 8.5 123 238-372 22-203 (635)
406 PRK14266 phosphate ABC transpo 99.4 7.7E-13 1.7E-17 121.5 8.0 126 238-373 22-194 (250)
407 PRK10636 putative ABC transpor 99.4 6.8E-13 1.5E-17 137.2 8.1 125 238-372 331-477 (638)
408 COG4167 SapF ABC-type antimicr 99.4 3.3E-13 7.2E-18 113.7 4.6 123 238-372 32-196 (267)
409 TIGR02880 cbbX_cfxQ probable R 99.4 2.1E-13 4.5E-18 127.2 3.7 68 5-78 62-136 (284)
410 COG0444 DppD ABC-type dipeptid 99.4 6.7E-13 1.5E-17 122.1 7.0 126 238-373 24-201 (316)
411 TIGR01192 chvA glucan exporter 99.4 8.8E-13 1.9E-17 135.4 8.6 125 238-372 354-518 (585)
412 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 8.3E-13 1.8E-17 134.7 8.3 124 238-372 24-208 (552)
413 TIGR00955 3a01204 The Eye Pigm 99.4 5.2E-13 1.1E-17 137.7 6.8 130 238-377 44-218 (617)
414 TIGR02203 MsbA_lipidA lipid A 99.4 1.1E-12 2.3E-17 134.7 9.0 124 238-371 351-515 (571)
415 TIGR01846 type_I_sec_HlyB type 99.4 9E-13 2E-17 138.1 8.6 125 238-372 476-640 (694)
416 TIGR00382 clpX endopeptidase C 99.4 1.9E-12 4.1E-17 125.5 10.0 137 212-373 78-221 (413)
417 cd03291 ABCC_CFTR1 The CFTR su 99.4 8.4E-13 1.8E-17 122.9 7.3 123 238-371 56-206 (282)
418 KOG0055|consensus 99.4 1.1E-12 2.5E-17 138.4 8.7 124 239-372 373-536 (1228)
419 PRK14252 phosphate ABC transpo 99.4 1.3E-12 2.8E-17 121.0 8.1 126 238-373 35-209 (265)
420 PRK10789 putative multidrug tr 99.4 1.3E-12 2.9E-17 133.7 8.9 125 238-372 334-498 (569)
421 cd03278 ABC_SMC_barmotin Barmo 99.4 2.8E-12 6E-17 113.3 9.4 116 239-373 17-165 (197)
422 COG0488 Uup ATPase components 99.4 1.8E-12 3.9E-17 129.6 9.0 125 238-373 22-201 (530)
423 TIGR00958 3a01208 Conjugate Tr 99.4 1.4E-12 3.1E-17 136.8 8.6 119 238-366 500-658 (711)
424 PRK10522 multidrug transporter 99.4 1.6E-12 3.4E-17 132.6 8.7 123 238-370 342-494 (547)
425 PF00005 ABC_tran: ABC transpo 99.4 8E-13 1.7E-17 109.7 5.3 103 239-341 5-134 (137)
426 TIGR02204 MsbA_rel ABC transpo 99.3 1.9E-12 4.1E-17 133.0 8.5 125 238-372 359-523 (576)
427 KOG0061|consensus 99.3 1.8E-12 3.9E-17 132.8 7.8 129 239-377 50-222 (613)
428 COG1132 MdlB ABC-type multidru 99.3 2.4E-12 5.3E-17 131.9 8.6 125 238-372 348-512 (567)
429 COG1123 ATPase components of v 99.3 2.6E-12 5.7E-17 126.5 8.0 126 238-373 28-202 (539)
430 COG4674 Uncharacterized ABC-ty 99.3 2.1E-12 4.5E-17 110.0 6.1 127 238-374 24-196 (249)
431 TIGR00390 hslU ATP-dependent p 99.3 4.8E-12 1E-16 121.2 9.2 89 212-300 13-104 (441)
432 PRK10535 macrolide transporter 99.3 2.1E-12 4.5E-17 133.9 7.3 128 238-375 27-194 (648)
433 COG4107 PhnK ABC-type phosphon 99.3 7.8E-12 1.7E-16 104.6 9.2 124 238-372 25-198 (258)
434 PLN03073 ABC transporter F fam 99.3 2.9E-12 6.4E-17 133.3 8.1 124 238-371 528-673 (718)
435 COG1219 ClpX ATP-dependent pro 99.3 1.7E-12 3.8E-17 118.0 5.6 138 213-374 63-203 (408)
436 KOG0057|consensus 99.3 5E-12 1.1E-16 122.8 9.0 123 238-370 371-532 (591)
437 TIGR00956 3a01205 Pleiotropic 99.3 1.8E-12 3.9E-17 144.0 6.7 128 240-377 784-954 (1394)
438 PLN03140 ABC transporter G fam 99.3 2.4E-12 5.3E-17 142.8 7.0 129 239-377 900-1071(1470)
439 COG0396 sufC Cysteine desulfur 99.3 7.6E-12 1.6E-16 109.4 8.4 129 238-376 23-195 (251)
440 KOG0059|consensus 99.3 3.7E-12 8E-17 135.9 7.4 128 238-375 584-748 (885)
441 COG4172 ABC-type uncharacteriz 99.3 3.7E-12 8E-17 119.4 6.4 126 238-373 306-474 (534)
442 PTZ00265 multidrug resistance 99.3 6E-12 1.3E-16 140.2 8.9 124 239-372 1188-1405(1466)
443 COG4136 ABC-type uncharacteriz 99.3 5.7E-12 1.2E-16 103.0 6.3 121 238-368 21-177 (213)
444 TIGR00954 3a01203 Peroxysomal 99.3 9E-12 1.9E-16 129.4 9.2 124 238-371 471-628 (659)
445 PLN03140 ABC transporter G fam 99.3 4.9E-12 1.1E-16 140.4 7.6 125 239-373 185-384 (1470)
446 COG1134 TagH ABC-type polysacc 99.3 1.1E-11 2.4E-16 109.6 7.8 119 238-371 46-193 (249)
447 PTZ00265 multidrug resistance 99.3 1.3E-11 2.8E-16 137.5 9.2 126 238-373 404-627 (1466)
448 PLN03232 ABC transporter C fam 99.2 1.1E-11 2.4E-16 139.0 8.4 123 239-371 1256-1417(1495)
449 PLN03130 ABC transporter C fam 99.2 1.4E-11 3E-16 138.5 9.1 123 239-371 1259-1420(1622)
450 COG2255 RuvB Holliday junction 99.2 2.3E-11 4.9E-16 109.4 8.4 70 204-281 19-88 (332)
451 cd03270 ABC_UvrA_I The excisio 99.2 3.1E-11 6.7E-16 109.1 8.6 57 310-376 130-190 (226)
452 KOG0055|consensus 99.2 2.5E-11 5.5E-16 128.4 9.1 123 240-372 1011-1173(1228)
453 PRK05201 hslU ATP-dependent pr 99.2 2.4E-11 5.1E-16 116.6 8.1 89 212-300 16-107 (443)
454 TIGR00957 MRP_assoc_pro multi 99.2 2.5E-11 5.4E-16 136.4 9.0 123 239-371 1306-1467(1522)
455 KOG0056|consensus 99.2 3.1E-11 6.6E-16 115.6 8.1 129 238-376 557-725 (790)
456 TIGR02639 ClpA ATP-dependent C 99.2 6.6E-11 1.4E-15 124.3 11.2 106 202-349 173-290 (731)
457 COG2256 MGS1 ATPase related to 99.2 4.8E-11 1E-15 112.2 9.0 102 201-347 14-118 (436)
458 TIGR00956 3a01205 Pleiotropic 99.2 2E-11 4.4E-16 135.7 7.6 126 238-373 80-257 (1394)
459 PTZ00243 ABC transporter; Prov 99.2 3.1E-11 6.8E-16 135.5 9.0 123 239-371 1330-1492(1560)
460 PLN03073 ABC transporter F fam 99.2 4.9E-11 1.1E-15 124.3 9.4 50 312-371 339-390 (718)
461 COG4138 BtuD ABC-type cobalami 99.2 1.2E-10 2.6E-15 97.6 9.0 128 239-377 19-184 (248)
462 KOG0927|consensus 99.2 3.8E-11 8.2E-16 116.4 6.3 125 239-373 410-557 (614)
463 TIGR01271 CFTR_protein cystic 99.2 6.9E-11 1.5E-15 132.5 9.2 122 240-371 1240-1399(1490)
464 cd03272 ABC_SMC3_euk Eukaryoti 99.2 1.1E-10 2.4E-15 106.6 8.8 52 312-373 153-210 (243)
465 TIGR00390 hslU ATP-dependent p 99.1 5.3E-11 1.2E-15 114.2 6.4 53 4-56 50-104 (441)
466 cd03279 ABC_sbcCD SbcCD and ot 99.1 5.2E-11 1.1E-15 106.7 6.0 118 245-375 28-183 (213)
467 KOG0742|consensus 99.1 2.3E-10 5E-15 107.5 9.6 128 208-371 352-479 (630)
468 cd03280 ABC_MutS2 MutS2 homolo 99.1 7.7E-11 1.7E-15 104.5 6.0 114 238-375 20-141 (200)
469 KOG0060|consensus 99.1 3E-10 6.6E-15 111.0 8.9 124 239-372 455-617 (659)
470 PF05496 RuvB_N: Holliday junc 99.1 5.3E-11 1.1E-15 104.9 3.1 62 5-77 54-115 (233)
471 KOG0065|consensus 99.1 1.9E-10 4.2E-15 122.0 7.8 126 242-377 814-982 (1391)
472 COG2256 MGS1 ATPase related to 99.1 1.2E-10 2.7E-15 109.5 5.6 67 5-78 52-119 (436)
473 PRK04195 replication factor C 99.1 1.2E-09 2.6E-14 109.6 12.3 72 201-281 4-75 (482)
474 COG5265 ATM1 ABC-type transpor 99.1 3.7E-10 8E-15 106.7 7.9 128 238-375 282-449 (497)
475 cd03271 ABC_UvrA_II The excisi 99.1 4.7E-10 1E-14 103.0 8.5 57 311-377 163-224 (261)
476 TIGR01271 CFTR_protein cystic 99.1 2.1E-10 4.5E-15 128.7 7.2 122 238-371 445-595 (1490)
477 KOG0062|consensus 99.1 3.6E-09 7.9E-14 102.3 14.5 118 241-373 386-530 (582)
478 KOG0927|consensus 99.0 3.8E-10 8.3E-15 109.6 7.7 126 238-373 94-269 (614)
479 TIGR00957 MRP_assoc_pro multi 99.0 2.2E-10 4.8E-15 128.9 7.1 120 239-370 658-805 (1522)
480 PRK05342 clpX ATP-dependent pr 99.0 2.8E-10 6.1E-15 111.0 6.8 76 4-79 111-189 (412)
481 PRK00080 ruvB Holliday junctio 99.0 1.3E-09 2.9E-14 104.0 11.2 70 203-280 17-86 (328)
482 cd03276 ABC_SMC6_euk Eukaryoti 99.0 3.7E-10 8.1E-15 99.8 6.5 107 247-371 23-159 (198)
483 cd03274 ABC_SMC4_euk Eukaryoti 99.0 3.4E-11 7.3E-16 107.6 -0.3 56 308-373 118-179 (212)
484 CHL00095 clpC Clp protease ATP 99.0 9.7E-10 2.1E-14 116.8 10.6 104 205-350 173-288 (821)
485 COG4615 PvdE ABC-type sideroph 99.0 7.6E-10 1.6E-14 103.8 8.2 130 238-377 342-501 (546)
486 TIGR00635 ruvB Holliday juncti 99.0 1.4E-09 3E-14 102.9 10.3 63 209-279 2-64 (305)
487 PLN03025 replication factor C 99.0 2.5E-09 5.5E-14 101.7 11.8 56 201-269 3-58 (319)
488 cd03273 ABC_SMC2_euk Eukaryoti 99.0 6.8E-10 1.5E-14 102.0 7.4 51 312-372 161-217 (251)
489 PRK13342 recombination factor 99.0 1.1E-09 2.4E-14 107.8 9.3 100 202-346 3-105 (413)
490 KOG0745|consensus 99.0 8.9E-10 1.9E-14 104.3 8.0 103 246-373 227-331 (564)
491 KOG0743|consensus 99.0 1.6E-09 3.4E-14 103.7 9.8 136 204-376 194-333 (457)
492 KOG0989|consensus 99.0 1.3E-09 2.7E-14 99.3 8.5 61 199-272 24-84 (346)
493 TIGR00382 clpX endopeptidase C 99.0 5.5E-10 1.2E-14 108.4 6.4 76 5-80 120-198 (413)
494 COG4172 ABC-type uncharacteriz 99.0 6.5E-10 1.4E-14 104.6 6.6 126 238-373 29-205 (534)
495 PTZ00243 ABC transporter; Prov 99.0 4.6E-10 9.9E-15 126.2 6.7 118 239-366 680-823 (1560)
496 cd03240 ABC_Rad50 The catalyti 99.0 1E-09 2.2E-14 97.5 7.5 52 312-373 110-170 (204)
497 PRK14956 DNA polymerase III su 99.0 3E-09 6.5E-14 104.4 11.0 59 201-271 8-66 (484)
498 PRK14960 DNA polymerase III su 99.0 3.8E-09 8.2E-14 106.7 11.9 58 202-271 6-63 (702)
499 PRK10865 protein disaggregatio 99.0 2.5E-09 5.5E-14 113.7 10.8 108 202-350 169-288 (857)
500 PLN03232 ABC transporter C fam 99.0 1.2E-09 2.6E-14 122.8 8.6 123 238-370 636-786 (1495)
No 1
>KOG0733|consensus
Probab=100.00 E-value=1.6e-61 Score=464.22 Aligned_cols=323 Identities=33% Similarity=0.540 Sum_probs=249.4
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
|+.||||||||+||+|+|++++++|+.|++++++|++.||||+++|++|+.|+.++|| |+||||||++.+.+++-.+
T Consensus 227 LlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPc---ivFiDeIDAI~pkRe~aqr 303 (802)
T KOG0733|consen 227 LLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPC---IVFIDEIDAITPKREEAQR 303 (802)
T ss_pred eeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCe---EEEeecccccccchhhHHH
Confidence 6789999999999999999999999999999999999999999999999999999999 9999999999998876333
Q ss_pred hhhhhHHHHHHHH-HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhcccccccccccccccc---ceeecc
Q psy6098 85 YYVTKIEELQLIV-AEKEQNLRRLQAQ--------RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKK---VLVKVH 152 (378)
Q Consensus 85 ~~~~~~~~l~~~l-~~~~~~l~~l~~~--------~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~---~i~~~~ 152 (378)
. +++++ .++..-|..+.+. ....+++++.++ .+|+|.|||++++-..+|++. .|+++.
T Consensus 304 e-------MErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD---paLRRaGRFdrEI~l~vP~e~aR~~IL~~~ 373 (802)
T KOG0733|consen 304 E-------MERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD---PALRRAGRFDREICLGVPSETAREEILRII 373 (802)
T ss_pred H-------HHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC---HHHhccccccceeeecCCchHHHHHHHHHH
Confidence 2 22222 2332223232222 123357777777 899999999999988877743 233333
Q ss_pred CCCceeeecCcccccc---ccCccc-------------hhhccc-------------------------chh--------
Q psy6098 153 PEGKFVVDIDKNIDIN---DVTPNC-------------RVALRN-------------------------ESY-------- 183 (378)
Q Consensus 153 ~~~~~~~~l~~~i~~~---~l~~~~-------------~~~~~~-------------------------~~~-------- 183 (378)
..+. .+...++.. .++|++ .+++++ +..
T Consensus 374 ~~~l---rl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~ 450 (802)
T KOG0733|consen 374 CRGL---RLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNA 450 (802)
T ss_pred HhhC---CCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcc
Confidence 2221 111222211 111111 000000 000
Q ss_pred ----hhhhhc-------C----------------------CCCchhhhhhccccCCCCCcccccCcHHHHHHHHHHHhcc
Q psy6098 184 ----TLHKIL-------P----------------------NKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELP 230 (378)
Q Consensus 184 ----~l~~i~-------~----------------------~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~ 230 (378)
.+.++. + +.+.|...+..+..+|+++|+|||+++++..+++.+|.+|
T Consensus 451 ~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~P 530 (802)
T KOG0733|consen 451 ERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAP 530 (802)
T ss_pred cccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhh
Confidence 000000 0 0112233445566799999999999999999999999999
Q ss_pred ccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccC
Q psy6098 231 VKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHH 310 (378)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~ 310 (378)
+++|+.|+.+|+..+.+++|+||||||||.|||++|++.+.+||.+.|++|..+|+||+++.||++|+.|
T Consensus 531 iK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRA---------- 600 (802)
T KOG0733|consen 531 IKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRA---------- 600 (802)
T ss_pred ccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHh----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCC
Q psy6098 311 PLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 375 (378)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~ 375 (378)
|++.||||||||+|+|+++|+. +....+.|.+++||.+|||..
T Consensus 601 -------------------R~saPCVIFFDEiDaL~p~R~~---~~s~~s~RvvNqLLtElDGl~ 643 (802)
T KOG0733|consen 601 -------------------RASAPCVIFFDEIDALVPRRSD---EGSSVSSRVVNQLLTELDGLE 643 (802)
T ss_pred -------------------hcCCCeEEEecchhhcCcccCC---CCchhHHHHHHHHHHHhcccc
Confidence 8999999999999999999954 345677899999999999984
No 2
>KOG0730|consensus
Probab=100.00 E-value=1.7e-55 Score=428.36 Aligned_cols=325 Identities=33% Similarity=0.490 Sum_probs=251.4
Q ss_pred CCCCCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcC-CCCCceEEEeehhhhhhccC
Q psy6098 2 LKPLHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKG-SSRGTEFFTMDVDEAIKSSE 80 (378)
Q Consensus 2 ~~~~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~-~~~~~ilf~DEid~~~~~~~ 80 (378)
..+|+.||||||||+++|++|++.+++|+.+++++++++|.||+|+++|++|++|.+++ |+ ++||||+|++|+++.
T Consensus 219 rg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~ps---ii~IdEld~l~p~r~ 295 (693)
T KOG0730|consen 219 RGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPS---IIFIDELDALCPKRE 295 (693)
T ss_pred CCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCe---eEeHHhHhhhCCccc
Confidence 35789999999999999999999999999999999999999999999999999999999 88 999999999999887
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc---cceeeccCCCc
Q psy6098 81 GFKPYYVTKIEELQLIVAEKEQNLRR-LQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKK---KVLVKVHPEGK 156 (378)
Q Consensus 81 g~~~~~~~~~~~l~~~l~~~~~~l~~-l~~~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~---~~i~~~~~~~~ 156 (378)
+... . ...+..++..+...+.. -.-....-.+++..++ ++++| |||+.++...+|.. ..+++.+...+
T Consensus 296 ~~~~-~---e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld---~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~ 367 (693)
T KOG0730|consen 296 GADD-V---ESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD---PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKM 367 (693)
T ss_pred ccch-H---HHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC---hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhc
Confidence 7544 1 11111111111111100 0000011124445555 68888 99999999988873 34556655443
Q ss_pred eeeecCccccccccCc------------cchhhc--------ccchhhhhhhcCCCCchhhhhhccccCCCCCcccccCc
Q psy6098 157 FVVDIDKNIDINDVTP------------NCRVAL--------RNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGL 216 (378)
Q Consensus 157 ~~~~l~~~i~~~~l~~------------~~~~~~--------~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~g~ 216 (378)
.. .+.++...++. .++.+. .++..++..+.|+ ..+......|+++|+||||+
T Consensus 368 ~~---~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~~~~~~~A~~~i~ps-----a~Re~~ve~p~v~W~dIGGl 439 (693)
T KOG0730|consen 368 NL---LSDVDLEDIAVSTHGYVGADLAALCREASLQATRRTLEIFQEALMGIRPS-----ALREILVEMPNVSWDDIGGL 439 (693)
T ss_pred CC---cchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCch-----hhhheeccCCCCChhhccCH
Confidence 22 22233332221 222211 1122233333333 33445577899999999999
Q ss_pred HHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccccchhHHHHHHH
Q psy6098 217 DNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVREL 296 (378)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~~~~~~~v~~~ 296 (378)
+++|.++++.|.||+++++.|..||+.++++|+||||||||||+++|++|.+.+.+|+.+.|++++++|+|++++.++++
T Consensus 440 E~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~i 519 (693)
T KOG0730|consen 440 EELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREV 519 (693)
T ss_pred HHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 297 FVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 297 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
|.+| |+..|+||||||||+++++|++..+ ....|++.++|++|||...
T Consensus 520 F~kA-----------------------------R~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~ 567 (693)
T KOG0730|consen 520 FRKA-----------------------------RQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEA 567 (693)
T ss_pred HHHH-----------------------------hhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHcccccc
Confidence 9999 8899999999999999999974322 5678999999999999875
Q ss_pred C
Q psy6098 377 T 377 (378)
Q Consensus 377 ~ 377 (378)
.
T Consensus 568 ~ 568 (693)
T KOG0730|consen 568 L 568 (693)
T ss_pred c
Confidence 4
No 3
>KOG0728|consensus
Probab=100.00 E-value=1.6e-51 Score=358.18 Aligned_cols=273 Identities=91% Similarity=1.319 Sum_probs=266.3
Q ss_pred hccCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccceeeccCCCc
Q psy6098 77 KSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGK 156 (378)
Q Consensus 77 ~~~~g~~~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~~i~~~~~~~~ 156 (378)
.+.++++++|...+.+++..+.+....++++.++.+++..+...+++++..++.||.+++++.+.+.+++.+++.|..++
T Consensus 13 ~~~e~~~~y~~~ki~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel~~lqe~gsyvgev~k~m~k~kVLVKvhpegK 92 (404)
T KOG0728|consen 13 KSGEGLRQYYLQKIEELQLQVAEKTQNLRRLEAQRNELNAKVRLLREELQLLQEPGSYVGEVVKAMGKKKVLVKVHPEGK 92 (404)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCcchHHHHHHhcCcceEEEEEcCCCc
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCccccccccCccchhhcccchhhhhhhcCCCCchhhhhhccccCCCCCcccccCcHHHHHHHHHHHhccccCchh
Q psy6098 157 FVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPEL 236 (378)
Q Consensus 157 ~~~~l~~~i~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~ 236 (378)
|++++..+|+..+++++.++++.++++.+++++|++.||+++.+.++.+|+.+|+.+||++.++++|+++|+.|.+||++
T Consensus 93 yvvdv~k~i~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPEL 172 (404)
T KOG0728|consen 93 YVVDVDKNIDISDVTPSSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEL 172 (404)
T ss_pred EEEeccCCCcHhhcCCcceEEEeccchHHHHhcccccchhhHHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhh
Q psy6098 237 FDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWS 316 (378)
Q Consensus 237 ~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~ 316 (378)
|.++|+.+|++++||||||+|||.|++++|....+.||+++|++++++|+|++.+.++++|.+|
T Consensus 173 F~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvma---------------- 236 (404)
T KOG0728|consen 173 FEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA---------------- 236 (404)
T ss_pred HHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHH----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCCCC
Q psy6098 317 LLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATK 378 (378)
Q Consensus 317 ~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~~~ 378 (378)
|.++|+|||+||||+|++.|.+.++|.|++.++.++++|.++|||.+|+
T Consensus 237 -------------rehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 237 -------------REHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred -------------HhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 8999999999999999999999999999999999999999999999885
No 4
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-48 Score=354.90 Aligned_cols=241 Identities=60% Similarity=0.951 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccceeeccCCCceeeecCccccccccCccchhhcccchhhhhh
Q psy6098 108 QAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHK 187 (378)
Q Consensus 108 ~~~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~~i~~~~~~~~~~~~l~~~i~~~~l~~~~~~~~~~~~~~l~~ 187 (378)
......+......+.++++.++.++.+.+++.+.+++..++++.+.+..+++.+.+.++.+.+.|++++++.+..+++..
T Consensus 48 ~~~~~~~~~~~~~~~~e~~~l~~~pl~vg~v~e~id~~~~iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~ 127 (406)
T COG1222 48 EAEGLRLKREVDRLREEIERLKEPPLIVGTVLEVLDDGRAIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVR 127 (406)
T ss_pred HhhhcchHHHHHHHHHHHHHhcCCCceEEEEEEEcCCceEEEEeCCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeee
Confidence 33344555778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCchhhhhhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhh
Q psy6098 188 ILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 267 (378)
Q Consensus 188 i~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~ 267 (378)
++|+..||.+..+.++..|+++|+||||+++++++|+++++.|+++|++|..+||.||++++||||||||||+|||++|+
T Consensus 128 vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~ 207 (406)
T COG1222 128 VLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN 207 (406)
T ss_pred eCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCceEEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccC
Q psy6098 268 HTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGS 347 (378)
Q Consensus 268 ~~~~~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~ 347 (378)
....+||++.|++++++|+|++++.|+++|++| +.++||||||||||+|+.
T Consensus 208 ~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lA-----------------------------rekaPsIIFiDEIDAIg~ 258 (406)
T COG1222 208 QTDATFIRVVGSELVQKYIGEGARLVRELFELA-----------------------------REKAPSIIFIDEIDAIGA 258 (406)
T ss_pred ccCceEEEeccHHHHHHHhccchHHHHHHHHHH-----------------------------hhcCCeEEEEechhhhhc
Confidence 999999999999999999999999999999999 889999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 348 SRIESGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 348 ~r~~~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
+|.+..++.|.+++|++++||.|||||+..
T Consensus 259 kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 259 KRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred ccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 999999999999999999999999999764
No 5
>KOG0736|consensus
Probab=100.00 E-value=3.6e-43 Score=345.49 Aligned_cols=331 Identities=28% Similarity=0.454 Sum_probs=222.5
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCC-C
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGF-K 83 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~-~ 83 (378)
|+.||||||||++.|++|+++|.|+++|++.++++.-.+-+|.++...|.+|++..|+ |||+-..|-+....+|- .
T Consensus 435 LLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pa---vifl~~~dvl~id~dgged 511 (953)
T KOG0736|consen 435 LLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPA---VLFLRNLDVLGIDQDGGED 511 (953)
T ss_pred EEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCce---EEEEeccceeeecCCCchh
Confidence 5789999999999999999999999999999999999999999999999999999999 99998888877655541 1
Q ss_pred chhhhhHHHHHH------------------HHHHHHHHHHHHHHH-----HHHHHHHHHH---------HHHHH---HHH
Q psy6098 84 PYYVTKIEELQL------------------IVAEKEQNLRRLQAQ-----RNELNAKVRM---------LREEL---QLL 128 (378)
Q Consensus 84 ~~~~~~~~~l~~------------------~l~~~~~~l~~l~~~-----~~~l~~~~~~---------l~eel---~~l 128 (378)
-+....+..+.. .........+..--. ...-.+++.- +..++ ...
T Consensus 512 ~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a 591 (953)
T KOG0736|consen 512 ARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLA 591 (953)
T ss_pred HHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 111111111110 000000000000000 0000011100 11111 233
Q ss_pred Hhcccccccccccccccc---ceeeccCCCceeeecCccc-cccccCccchhhcccchhhhhhhcCCCCchhhhhhcccc
Q psy6098 129 QEQGSYVGEVVKPMDKKK---VLVKVHPEGKFVVDIDKNI-DINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEK 204 (378)
Q Consensus 129 ~~~g~~~~~i~~~l~~~~---~i~~~~~~~~~~~~l~~~i-~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~ 204 (378)
.+..+|....+..+...- +..++...+ .......- +-.....+......+...++.++.....+. .....
T Consensus 592 ~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~--l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~a----iGAPK 665 (953)
T KOG0736|consen 592 RKTSGFSFGDLEALVAHSSLAAKTRIKNKG--LAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDA----IGAPK 665 (953)
T ss_pred HhcCCCCHHHHHHHhcCchHHHHHHHHhhc--ccccchhccccccccccceecHHHHHHHHHHHHHhhhhh----cCCCC
Confidence 455555544443322211 000110000 00000000 000111111222223333343332222211 13456
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCccccc
Q psy6098 205 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 284 (378)
Q Consensus 205 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~ 284 (378)
+|.++|+||||++++|.+|.+.|..|++||++|.+ ++.+..+++||||||||||.+||++|.++...|+.+.|+++..+
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 89999999999999999999999999999999866 88888899999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHH
Q psy6098 285 FIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 364 (378)
Q Consensus 285 ~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~ 364 (378)
|+|+++++||++|+.| |+..||||||||+|+++|+|+....++ ....|++
T Consensus 745 YVGqSE~NVR~VFerA-----------------------------R~A~PCVIFFDELDSlAP~RG~sGDSG-GVMDRVV 794 (953)
T KOG0736|consen 745 YVGQSEENVREVFERA-----------------------------RSAAPCVIFFDELDSLAPNRGRSGDSG-GVMDRVV 794 (953)
T ss_pred HhcchHHHHHHHHHHh-----------------------------hccCCeEEEeccccccCccCCCCCCcc-ccHHHHH
Confidence 9999999999999999 899999999999999999997654333 2456899
Q ss_pred HHHHHhccCCC
Q psy6098 365 LELLNQLDGFE 375 (378)
Q Consensus 365 ~~lL~~l~~~~ 375 (378)
.|+|.+|||.-
T Consensus 795 SQLLAELDgls 805 (953)
T KOG0736|consen 795 SQLLAELDGLS 805 (953)
T ss_pred HHHHHHhhccc
Confidence 99999999975
No 6
>KOG0727|consensus
Probab=100.00 E-value=1.6e-40 Score=289.85 Aligned_cols=259 Identities=42% Similarity=0.735 Sum_probs=236.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccceeeccCCCceeeecCccccccc
Q psy6098 90 IEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDIND 169 (378)
Q Consensus 90 ~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~~i~~~~~~~~~~~~l~~~i~~~~ 169 (378)
...++..+.-+..+...+......+...+...++++...+.-+-..|.+++.++++.+++....+..|++.+.+.++.+.
T Consensus 34 ~k~le~~le~l~vqe~yik~e~~~lkre~~~aqeevkriqsvplvigqfle~vdqnt~ivgsttgsny~vrilstidrel 113 (408)
T KOG0727|consen 34 YKKLERELELLEVQEDYIKDEQRNLKRELLHAQEEVKRIQSVPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDREL 113 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhhccCceeecccCCceEEeehhhhhHHH
Confidence 34555555444444444444455666777777888888888889999999999999999999999999999999999999
Q ss_pred cCccchhhcccchhhhhhhcCCCCchhhhhhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCccee
Q psy6098 170 VTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVL 249 (378)
Q Consensus 170 l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 249 (378)
++|++.+++.+.++++..++|+..|+..+.+.-...|+++|.|+||++-+|++++++++.|+.+.++++.+|+.||.+++
T Consensus 114 lkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvl 193 (408)
T KOG0727|consen 114 LKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVL 193 (408)
T ss_pred cCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceE
Confidence 99999999999999999999999999888888889999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCchHHHHHHHhhhcCceEEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhccc
Q psy6098 250 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNF 329 (378)
Q Consensus 250 l~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (378)
+|||||||||+|+|++|+.....||++.|++++++|.|++.+.++.+|..|
T Consensus 194 lygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrla----------------------------- 244 (408)
T KOG0727|consen 194 LYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA----------------------------- 244 (408)
T ss_pred EeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 330 REHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 330 ~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
+.+.|+|||+||||+|+.+|-+...|.|.+.++.+.++|++||||+.+
T Consensus 245 kenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~ 292 (408)
T KOG0727|consen 245 KENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT 292 (408)
T ss_pred hccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc
Confidence 889999999999999999999988999999999999999999999865
No 7
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2e-41 Score=353.70 Aligned_cols=320 Identities=33% Similarity=0.559 Sum_probs=231.7
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
++.||||||||++|+++|++++.+|+.+++++++++|.|+++++++.+|+.|...+|+ ||||||+|+++..++....
T Consensus 216 LL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~---il~iDEid~l~~~r~~~~~ 292 (733)
T TIGR01243 216 LLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPS---IIFIDEIDAIAPKREEVTG 292 (733)
T ss_pred EEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCc---EEEeehhhhhcccccCCcc
Confidence 5889999999999999999999999999999999999999999999999999999998 9999999999987654322
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccccccccccccccc---cceeeccCCCce
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQ----RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKK---KVLVKVHPEGKF 157 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~---~~i~~~~~~~~~ 157 (378)
... ..+...+.. .+..+... .-...+.++.++ +++++++||...+...+++. ..+++.+.....
T Consensus 293 ~~~---~~~~~~Ll~---~ld~l~~~~~vivI~atn~~~~ld---~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~ 363 (733)
T TIGR01243 293 EVE---KRVVAQLLT---LMDGLKGRGRVIVIGATNRPDALD---PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP 363 (733)
T ss_pred hHH---HHHHHHHHH---HhhccccCCCEEEEeecCChhhcC---HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC
Confidence 111 111111111 11111000 000123333443 57788899988887776653 234443332211
Q ss_pred eeecCcccccccc---Ccc---------chhh--------------------------------cccchhhhhhhcCCCC
Q psy6098 158 VVDIDKNIDINDV---TPN---------CRVA--------------------------------LRNESYTLHKILPNKV 193 (378)
Q Consensus 158 ~~~l~~~i~~~~l---~~~---------~~~~--------------------------------~~~~~~~l~~i~~~~~ 193 (378)
+...++.+.+ ..+ ++.+ ..+...++..+.|+.
T Consensus 364 ---l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~- 439 (733)
T TIGR01243 364 ---LAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSA- 439 (733)
T ss_pred ---CccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccc-
Confidence 1111111111 001 0100 001111111111111
Q ss_pred chhhhhhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceE
Q psy6098 194 DPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTF 273 (378)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~ 273 (378)
.+......|.++|++++|+++++++|++.+.+++.+++.+..+++.++.+++|+||||||||++++++|+.++.++
T Consensus 440 ----~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f 515 (733)
T TIGR01243 440 ----IREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF 515 (733)
T ss_pred ----cchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 1122345678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCC
Q psy6098 274 IRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESG 353 (378)
Q Consensus 274 i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~ 353 (378)
+.++++++.++|+|++++.++++|..| +...|+||||||||+|++.|+...
T Consensus 516 i~v~~~~l~~~~vGese~~i~~~f~~A-----------------------------~~~~p~iifiDEid~l~~~r~~~~ 566 (733)
T TIGR01243 516 IAVRGPEILSKWVGESEKAIREIFRKA-----------------------------RQAAPAIIFFDEIDAIAPARGARF 566 (733)
T ss_pred EEEehHHHhhcccCcHHHHHHHHHHHH-----------------------------HhcCCEEEEEEChhhhhccCCCCC
Confidence 999999999999999999999999999 778999999999999999985422
Q ss_pred CCCChHHHHHHHHHHHhccCCC
Q psy6098 354 SGGDSEVQRTMLELLNQLDGFE 375 (378)
Q Consensus 354 ~~~d~~~~~~~~~lL~~l~~~~ 375 (378)
+ .....+.+.++|.+||+..
T Consensus 567 ~--~~~~~~~~~~lL~~ldg~~ 586 (733)
T TIGR01243 567 D--TSVTDRIVNQLLTEMDGIQ 586 (733)
T ss_pred C--ccHHHHHHHHHHHHhhccc
Confidence 2 2345678899999999864
No 8
>KOG0726|consensus
Probab=100.00 E-value=1.8e-37 Score=275.56 Aligned_cols=227 Identities=50% Similarity=0.860 Sum_probs=216.4
Q ss_pred HHHHHHHHHhccccccccccccccccceeeccCCCceeeecCccccccccCccchhhcccchhhhhhhcCCCCchhhhhh
Q psy6098 121 LREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLM 200 (378)
Q Consensus 121 l~eel~~l~~~g~~~~~i~~~l~~~~~i~~~~~~~~~~~~l~~~i~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 200 (378)
-+..++.++.++--++++.+.++++.+++....+..+++++.+.++.+.+.|+|.+.+.+..+++..++....||.+..+
T Consensus 95 ~r~~vd~lRGtPmsvg~leEiidd~haivst~~g~e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpmv~vm 174 (440)
T KOG0726|consen 95 ERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMVSVM 174 (440)
T ss_pred HHhHHHhhcCCccccccHHHHhcCCceEEecccCchheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCccceee
Confidence 33456788888888999999999999999988888999999999999999999999999998999999999999999999
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCc
Q psy6098 201 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 280 (378)
Q Consensus 201 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~ 280 (378)
.++..|..+|.|+||+++++++|++++++|+.||+.+..+|+.||+++.|||+||||||.|+|++|+....+|+++-|++
T Consensus 175 K~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGse 254 (440)
T KOG0726|consen 175 KVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSE 254 (440)
T ss_pred ecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 281 LVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 281 l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
+.++|.|++.+.++++|+.| ..++|+|+|+||||+++.+|.+..+|...+.
T Consensus 255 LiQkylGdGpklvRqlF~vA-----------------------------~e~apSIvFiDEIdAiGtKRyds~SggerEi 305 (440)
T KOG0726|consen 255 LIQKYLGDGPKLVRELFRVA-----------------------------EEHAPSIVFIDEIDAIGTKRYDSNSGGEREI 305 (440)
T ss_pred HHHHHhccchHHHHHHHHHH-----------------------------HhcCCceEEeehhhhhccccccCCCccHHHH
Confidence 99999999999999999999 6789999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCC
Q psy6098 361 QRTMLELLNQLDGFEA 376 (378)
Q Consensus 361 ~~~~~~lL~~l~~~~~ 376 (378)
++.++++|+++|||++
T Consensus 306 QrtmLELLNQldGFds 321 (440)
T KOG0726|consen 306 QRTMLELLNQLDGFDS 321 (440)
T ss_pred HHHHHHHHHhccCccc
Confidence 9999999999999976
No 9
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-37 Score=307.50 Aligned_cols=327 Identities=34% Similarity=0.489 Sum_probs=233.1
Q ss_pred CCCCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCC
Q psy6098 3 KPLHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGF 82 (378)
Q Consensus 3 ~~~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~ 82 (378)
..++.||||||||++++++|.+ ++.++.+++++.+++|+|+++.+++.+|+.|+..+|+ ++|+||++.+++.+...
T Consensus 20 ~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---ii~~d~~~~~~~~~~~~ 95 (494)
T COG0464 20 GVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPS---IIFIDEIDALAPKRSSD 95 (494)
T ss_pred CceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCC---eEeechhhhcccCcccc
Confidence 4577899999999999999999 8888999999999999999999999999999999997 99999999999886661
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc---ceeeccCCCc
Q psy6098 83 KPYYVTKIEELQLIVAEKEQNLRRLQ---AQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKK---VLVKVHPEGK 156 (378)
Q Consensus 83 ~~~~~~~~~~l~~~l~~~~~~l~~l~---~~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~---~i~~~~~~~~ 156 (378)
. ..+...+. .++...+..+. .......++...++ ++++++++|...+...+++.. .+...+....
T Consensus 96 ~---~~~~~~v~---~~l~~~~d~~~~~~v~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~ 166 (494)
T COG0464 96 Q---GEVERRVV---AQLLALMDGLKRGQVIVIGATNRPDGLD---PAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLM 166 (494)
T ss_pred c---cchhhHHH---HHHHHhcccccCCceEEEeecCCccccC---hhHhCccccceeeecCCCCHHHHHHHHHHHHhcC
Confidence 1 11111111 11111111111 00000123333333 577889999999888777643 3333332222
Q ss_pred eeeecCccccccccCccc------hh-hc--ccchhhhhhhc---CCCCch-------hhh-----hhccccCCCCCccc
Q psy6098 157 FVVDIDKNIDINDVTPNC------RV-AL--RNESYTLHKIL---PNKVDP-------LVS-----LMMVEKVPDSTYEM 212 (378)
Q Consensus 157 ~~~~l~~~i~~~~l~~~~------~~-~~--~~~~~~l~~i~---~~~~~~-------~~~-----~~~~~~~~~~~~~~ 212 (378)
.. ....+...+...+ .. .+ .....++.+.. +..... ... .......+.++|++
T Consensus 167 ~~---~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~d 243 (494)
T COG0464 167 FL---GPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPSRGVLFEDEDVTLDD 243 (494)
T ss_pred CC---cccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcccccccCCCCcceeh
Confidence 11 1111111111000 00 00 00111111210 111000 000 12334567899999
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccccchhHHH
Q psy6098 213 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRM 292 (378)
Q Consensus 213 i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~~~~~~~ 292 (378)
++|++++++.+++.+.+++.+++.+...++.++.+++|+||||||||+|++++|..++.+|+.++++++.++|+|+++++
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ 323 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKN 323 (494)
T ss_pred hhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 293 VRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 293 v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
++++|..| +...||||||||+|++++.|+.. .+....+.+.++|.+|+
T Consensus 324 ir~~F~~A-----------------------------~~~~p~iiFiDEiDs~~~~r~~~---~~~~~~r~~~~lL~~~d 371 (494)
T COG0464 324 IRELFEKA-----------------------------RKLAPSIIFIDEIDSLASGRGPS---EDGSGRRVVGQLLTELD 371 (494)
T ss_pred HHHHHHHH-----------------------------HcCCCcEEEEEchhhhhccCCCC---CchHHHHHHHHHHHHhc
Confidence 99999999 77899999999999999999532 23334789999999999
Q ss_pred CCCCC
Q psy6098 373 GFEAT 377 (378)
Q Consensus 373 ~~~~~ 377 (378)
+....
T Consensus 372 ~~e~~ 376 (494)
T COG0464 372 GIEKA 376 (494)
T ss_pred CCCcc
Confidence 87653
No 10
>KOG0735|consensus
Probab=100.00 E-value=1.2e-35 Score=290.13 Aligned_cols=315 Identities=28% Similarity=0.374 Sum_probs=210.0
Q ss_pred CCCCCCCChhHHHHHHHhhccC----ceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTE----CTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSE 80 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~----~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~ 80 (378)
++.||+|||||.||+++++++. ++|..|+++.+-+.-.-...+.++.+|..|..++|+ |+.+|++|.++...+
T Consensus 435 ll~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PS---iIvLDdld~l~~~s~ 511 (952)
T KOG0735|consen 435 LLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPS---IIVLDDLDCLASASS 511 (952)
T ss_pred EEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCc---EEEEcchhhhhccCc
Confidence 5789999999999999999874 699999999999877777778899999999999999 999999999997322
Q ss_pred CCCc---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
Q psy6098 81 GFKP---YYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLR----------------------------------- 122 (378)
Q Consensus 81 g~~~---~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~----------------------------------- 122 (378)
.-.+ .+........+++...+..+.+..+. ..-.+.+..+.
T Consensus 512 ~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~-Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~ 590 (952)
T KOG0735|consen 512 NENGQDGVVSERLAAFLNQVIKIYLKRNRKIAV-IATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL 590 (952)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHccCcEEEE-EEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhh
Confidence 1111 11111111111111111000000000 00000111111
Q ss_pred -----HHHHHH-Hhccccccccccccccccc---e-eeccCCCceeeecCccccccccCccchhhcccchhhhhhhcCCC
Q psy6098 123 -----EELQLL-QEQGSYVGEVVKPMDKKKV---L-VKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNK 192 (378)
Q Consensus 123 -----eel~~l-~~~g~~~~~i~~~l~~~~~---i-~~~~~~~~~~~~l~~~i~~~~l~~~~~~~~~~~~~~l~~i~~~~ 192 (378)
+.++.+ ..+.+|...+.+.+-++.. . -+++.+.+ .+. -..+..+|+...|..
T Consensus 591 ~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~k------------llt------ke~f~ksL~~F~P~a 652 (952)
T KOG0735|consen 591 SDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPK------------LLT------KELFEKSLKDFVPLA 652 (952)
T ss_pred hhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcc------------cch------HHHHHHHHHhcChHH
Confidence 011111 1223333222222211100 0 00000000 000 001112222222221
Q ss_pred CchhhhhhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce
Q psy6098 193 VDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 272 (378)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~ 272 (378)
.... ....-....|+|++|+.++++.+++.+.||.++|..|.+..+....+++||||||||||.|+.++|..++..
T Consensus 653 LR~i----k~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~ 728 (952)
T KOG0735|consen 653 LRGI----KLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR 728 (952)
T ss_pred hhhc----cccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee
Confidence 1110 011122378999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCC
Q psy6098 273 FIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIES 352 (378)
Q Consensus 273 ~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~ 352 (378)
||.+.|+++..+|+|.++++||.+|..| ++.+||||||||+|+++|+|+..
T Consensus 729 fisvKGPElL~KyIGaSEq~vR~lF~rA-----------------------------~~a~PCiLFFDEfdSiAPkRGhD 779 (952)
T KOG0735|consen 729 FISVKGPELLSKYIGASEQNVRDLFERA-----------------------------QSAKPCILFFDEFDSIAPKRGHD 779 (952)
T ss_pred EEEecCHHHHHHHhcccHHHHHHHHHHh-----------------------------hccCCeEEEeccccccCcccCCC
Confidence 9999999999999999999999999999 77899999999999999999776
Q ss_pred CCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 353 GSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 353 ~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
+.|. +.|.++|+|++|||.+..
T Consensus 780 sTGV---TDRVVNQlLTelDG~Egl 801 (952)
T KOG0735|consen 780 STGV---TDRVVNQLLTELDGAEGL 801 (952)
T ss_pred CCCc---hHHHHHHHHHhhcccccc
Confidence 5553 458899999999998653
No 11
>KOG0741|consensus
Probab=100.00 E-value=4.8e-36 Score=284.64 Aligned_cols=308 Identities=20% Similarity=0.274 Sum_probs=191.8
Q ss_pred CCCCCCCChhHHHHHHHhhccCc-eEEEeccccccccccchhHHHHHHHHHHHHh----cC-CCCCceEEEeehhhhhhc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTEC-TFIRVSGSELVQKFIGEGSRMVRELFVMARC----KG-SSRGTEFFTMDVDEAIKS 78 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~-~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~----~~-~~~~~ilf~DEid~~~~~ 78 (378)
||-||||||||++||.+++.||+ .--.||++++++||+||||++||.+|+.|.. .. -+.-|||+|||||++|++
T Consensus 260 LLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKq 339 (744)
T KOG0741|consen 260 LLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQ 339 (744)
T ss_pred EEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHh
Confidence 57899999999999999999997 4556999999999999999999999999964 22 233489999999999999
Q ss_pred cCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcccccccccccccccc---ceeec
Q psy6098 79 SEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRN----ELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKK---VLVKV 151 (378)
Q Consensus 79 ~~g~~~~~~~~~~~l~~~l~~~~~~l~~l~~~~~----~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~---~i~~~ 151 (378)
|+.++....+++ .+.+++- ..++....+++ .++++.+.++ ++|.||||+.-..+..+|+++ .|+++
T Consensus 340 RGS~~g~TGVhD-~VVNQLL---sKmDGVeqLNNILVIGMTNR~DlID---EALLRPGRlEVqmEIsLPDE~gRlQIl~I 412 (744)
T KOG0741|consen 340 RGSMAGSTGVHD-TVVNQLL---SKMDGVEQLNNILVIGMTNRKDLID---EALLRPGRLEVQMEISLPDEKGRLQILKI 412 (744)
T ss_pred cCCCCCCCCccH-HHHHHHH---HhcccHHhhhcEEEEeccCchhhHH---HHhcCCCceEEEEEEeCCCccCceEEEEh
Confidence 887766555544 3433333 23333333333 4567778877 799999999999999999976 46777
Q ss_pred cCCCce-eeecCccccccccCccchhhcccc---------hhhhhhhcCCC----Cchhh------hh----hccccC-C
Q psy6098 152 HPEGKF-VVDIDKNIDINDVTPNCRVALRNE---------SYTLHKILPNK----VDPLV------SL----MMVEKV-P 206 (378)
Q Consensus 152 ~~~~~~-~~~l~~~i~~~~l~~~~~~~~~~~---------~~~l~~i~~~~----~~~~~------~~----~~~~~~-~ 206 (378)
|+..+. .--+..+||..+++.-++.....+ ++++++..... .++.. .+ ...+.+ |
T Consensus 413 HT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkP 492 (744)
T KOG0741|consen 413 HTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKP 492 (744)
T ss_pred hhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCc
Confidence 776543 223456777776654333222111 22332221111 11100 00 000011 1
Q ss_pred CCCcc--c-----ccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEe-cc
Q psy6098 207 DSTYE--M-----VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV-SG 278 (378)
Q Consensus 207 ~~~~~--~-----i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~-~~ 278 (378)
.-..+ + ..|+-..-..+.+.+..-....+..+.-.-.+-..++|.||||+|||+||-.||.....+||++ +.
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSp 572 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISP 572 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeCh
Confidence 00000 0 0111100011111111000000111222223334689999999999999999999999999988 44
Q ss_pred CcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCC
Q psy6098 279 SELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSS 348 (378)
Q Consensus 279 ~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~ 348 (378)
.++........-..+..+|+.| ..++-++|++|+|+.|..-
T Consensus 573 e~miG~sEsaKc~~i~k~F~DA-----------------------------YkS~lsiivvDdiErLiD~ 613 (744)
T KOG0741|consen 573 EDMIGLSESAKCAHIKKIFEDA-----------------------------YKSPLSIIVVDDIERLLDY 613 (744)
T ss_pred HHccCccHHHHHHHHHHHHHHh-----------------------------hcCcceEEEEcchhhhhcc
Confidence 4444432222234678889888 6778899999999988764
No 12
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.6e-33 Score=270.79 Aligned_cols=256 Identities=44% Similarity=0.751 Sum_probs=233.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccceeeccCCCceeeecCccccccccC
Q psy6098 92 ELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVT 171 (378)
Q Consensus 92 ~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~~i~~~~~~~~~~~~l~~~i~~~~l~ 171 (378)
.+......+......+....+.+...+..+++++..++.++.+.+++.+.+++...+++...+..+++.+.+.++.+.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 105 (398)
T PTZ00454 26 ELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPLVIGQFLEMIDSNYGIVSSTSGSNYYVRILSTLNRELLK 105 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEcCCEEEEEcCCCCEEEEecccccCHhhCC
Confidence 33444555556666666767777888888999999999999999999999999999999998889999999999999999
Q ss_pred ccchhhcccchhhhhhhcCCCCchhhhhhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEe
Q psy6098 172 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 251 (378)
Q Consensus 172 ~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 251 (378)
+++++++......+..++|...++.+..+.++..|+++|+||+|++.++++|++.+.+|+.+++.+..+|+.++.+++|+
T Consensus 106 ~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~ 185 (398)
T PTZ00454 106 PNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLY 185 (398)
T ss_pred CCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEE
Confidence 99999999999999999999999988888888899999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHhhhcCceEEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhccccc
Q psy6098 252 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE 331 (378)
Q Consensus 252 Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (378)
||||||||++++++|+.++.+++.+.++++.++|+|++...++++|..+ +.
T Consensus 186 GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A-----------------------------~~ 236 (398)
T PTZ00454 186 GPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLA-----------------------------RE 236 (398)
T ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHH-----------------------------Hh
Confidence 9999999999999999999999999999999999999999999999988 67
Q ss_pred CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 332 HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 332 ~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
..|+||||||||+++.+|.++.++.+...++.+.++|.+|+++..
T Consensus 237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 799999999999999999887788888889999999999998753
No 13
>KOG0729|consensus
Probab=100.00 E-value=1.8e-34 Score=253.71 Aligned_cols=200 Identities=57% Similarity=0.953 Sum_probs=187.8
Q ss_pred eeeccCCCceeeecCccccccccCccchhhcccchhhhhhhcCCCCchhhhhhccccCCCCCcccccCcHHHHHHHHHHH
Q psy6098 148 LVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVI 227 (378)
Q Consensus 148 i~~~~~~~~~~~~l~~~i~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~ 227 (378)
++.+....++++.+-+.+...++..++|+-..+..+.++--+|+++||.++.+.+++-|+++|.|+||.+++++++++++
T Consensus 114 vin~kqiakfvv~lg~~vsptdieegmrvgvdrnkyqi~lplppkidpsvtmm~veekpdvty~dvggckeqieklrevv 193 (435)
T KOG0729|consen 114 VINVKQIAKFVVGLGDRVSPTDIEEGMRVGVDRNKYQIQLPLPPKIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVV 193 (435)
T ss_pred eeeHHHHHHHHhccccccCchhhhhhheecccccceeEeccCCCCCCCceeEEEeecCCCcccccccchHHHHHHHHHHH
Confidence 33343445567788888999999999999998888888888999999999999999999999999999999999999999
Q ss_pred hccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccccchhHHHHHHHHHHhhhhhhhh
Q psy6098 228 ELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAF 307 (378)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~ 307 (378)
+.|+.+|+.|-.+|+.|++++++|||||||||.++|++|+.....||++-|++++++|+|++.+.++++|++|
T Consensus 194 e~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~ma------- 266 (435)
T KOG0729|consen 194 ELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMA------- 266 (435)
T ss_pred hccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHh-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 308 AHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
|..+.|||||||||+++..|-+...|.|.++++.+++++.+||||+.
T Consensus 267 ----------------------rtkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp 313 (435)
T KOG0729|consen 267 ----------------------RTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP 313 (435)
T ss_pred ----------------------cccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC
Confidence 78899999999999999999988889999999999999999999974
No 14
>KOG0652|consensus
Probab=100.00 E-value=3.3e-33 Score=245.10 Aligned_cols=202 Identities=48% Similarity=0.848 Sum_probs=191.3
Q ss_pred ceeeccCCCceeeecCccccccccCccchhhcccchhhhhhhcCCCCchhhhhhccccCCCCCcccccCcHHHHHHHHHH
Q psy6098 147 VLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEV 226 (378)
Q Consensus 147 ~i~~~~~~~~~~~~l~~~i~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~ 226 (378)
+.++.+.+..++.++...++.+.++|+-.+.+..+++-+-..+|+.+|+.+..+.+..-|+.+|+|+||++.+++++.++
T Consensus 107 aViktStRqt~fLPvvGLvd~~~LkPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEA 186 (424)
T KOG0652|consen 107 AVIKTSTRQTYFLPVVGLVDPDKLKPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEA 186 (424)
T ss_pred EEEecccceeeeeeeecccChhhCCCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHH
Confidence 36677777888888888999999999999999999998888899999999999999999999999999999999999999
Q ss_pred HhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccccchhHHHHHHHHHHhhhhhhh
Q psy6098 227 IELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLA 306 (378)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~ 306 (378)
|..|+.|++.|.++++.||+++++|||||||||.++|+.|...+.+|..+.|+.++++|+|.+.+.|+..|..|
T Consensus 187 iVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLA------ 260 (424)
T KOG0652|consen 187 IVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALA------ 260 (424)
T ss_pred hccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHh------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 307 FAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
+...|+||||||+|+|+.+|.++-.++|.++++.++++|.+||||.+.
T Consensus 261 -----------------------KEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~ 308 (424)
T KOG0652|consen 261 -----------------------KEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD 308 (424)
T ss_pred -----------------------hccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc
Confidence 778999999999999999998888889999999999999999999764
No 15
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.98 E-value=1e-31 Score=261.20 Aligned_cols=234 Identities=50% Similarity=0.843 Sum_probs=219.7
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccccccccceeeccCCCceeeecCccccccccCccchhhcccchhhhhhhcCCC
Q psy6098 113 ELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNK 192 (378)
Q Consensus 113 ~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~~i~~~~~~~~~~~~l~~~i~~~~l~~~~~~~~~~~~~~l~~i~~~~ 192 (378)
.+...+..++++++.++.++..++++.+.++++..+++...+..+++.+.+.++.+.+.|++++.+.+....+..+++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~ 164 (438)
T PTZ00361 85 PAQEKNEAELKKVDDLRGSPLSVGTLEEIIDENHAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDE 164 (438)
T ss_pred hHHHHHHHHHHHHHHhhCCCcEEEEEEEEeCCCeEEEEeCCCCEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccc
Confidence 56677888889999999999999999999999999999998889999999999999999999999998889999999999
Q ss_pred CchhhhhhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce
Q psy6098 193 VDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 272 (378)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~ 272 (378)
.|+.+..+.++..|+.+|+||+|+++++++|.+++.+++.+++.+..+++.++.+++|+||||||||++++++|+.+..+
T Consensus 165 ~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~ 244 (438)
T PTZ00361 165 VDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT 244 (438)
T ss_pred cchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCC
Q psy6098 273 FIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIES 352 (378)
Q Consensus 273 ~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~ 352 (378)
++.+.++++.+.|.|++...++++|..| +.+.|+||||||||+++.+|...
T Consensus 245 fi~V~~seL~~k~~Ge~~~~vr~lF~~A-----------------------------~~~~P~ILfIDEID~l~~kR~~~ 295 (438)
T PTZ00361 245 FLRVVGSELIQKYLGDGPKLVRELFRVA-----------------------------EENAPSIVFIDEIDAIGTKRYDA 295 (438)
T ss_pred EEEEecchhhhhhcchHHHHHHHHHHHH-----------------------------HhCCCcEEeHHHHHHHhccCCCC
Confidence 9999999999999999999999999988 66789999999999999999877
Q ss_pred CCCCChHHHHHHHHHHHhccCCC
Q psy6098 353 GSGGDSEVQRTMLELLNQLDGFE 375 (378)
Q Consensus 353 ~~~~d~~~~~~~~~lL~~l~~~~ 375 (378)
.++.+...++.++++|.+|+++.
T Consensus 296 ~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 296 TSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred CCcccHHHHHHHHHHHHHHhhhc
Confidence 77888888899999999999864
No 16
>KOG0651|consensus
Probab=99.97 E-value=4.9e-31 Score=236.61 Aligned_cols=233 Identities=47% Similarity=0.785 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccccceeeccCCCceeeecCccccccccCccchhhcccchhhhhhhcCCCC
Q psy6098 114 LNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKV 193 (378)
Q Consensus 114 l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~~i~~~~~~~~~~~~l~~~i~~~~l~~~~~~~~~~~~~~l~~i~~~~~ 193 (378)
+........+.+.+++..+...++++..+.+++-+++.+.+..|++.+...+|..+++.++++.+.-....+.+.+|...
T Consensus 36 l~k~~~ksend~kslqsvg~~~gevlk~l~~~~~iVK~s~Gpryvvg~~~~~D~~~i~~G~rv~ldittltIm~~lprev 115 (388)
T KOG0651|consen 36 LGKKYDKSENDLKSLQSVGQIIGEVLKQLEDEKFIVKASSGPRYVVGCRRSVDKEKIARGTRVVLDITTLTIMRGLPREV 115 (388)
T ss_pred HhhhcCcccchHHHhhhcCchhHHHHhhccccceEeecCCCCcEEEEcccccchhhhccCceeeeeeeeeehhcccchHH
Confidence 33444455556678888899999999999999999999999999999999999999999999998766777788888888
Q ss_pred chhhhhhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceE
Q psy6098 194 DPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTF 273 (378)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~ 273 (378)
| .+-.+..+...+.+|+.++|.-.+..++++.+..|+..|+++.+.+|++|.+++|+||||+|||.+++++|..++.++
T Consensus 116 d-~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 116 D-LVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred H-HHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 8 777778888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCC
Q psy6098 274 IRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESG 353 (378)
Q Consensus 274 i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~ 353 (378)
+.+..+++.++|.||+.+.+++.|..| +.+.||+||+||||+++.+|..-.
T Consensus 195 l~v~ss~lv~kyiGEsaRlIRemf~yA-----------------------------~~~~pciifmdeiDAigGRr~se~ 245 (388)
T KOG0651|consen 195 LKVVSSALVDKYIGESARLIRDMFRYA-----------------------------REVIPCIIFMDEIDAIGGRRFSEG 245 (388)
T ss_pred EEeeHhhhhhhhcccHHHHHHHHHHHH-----------------------------hhhCceEEeehhhhhhccEEeccc
Confidence 999999999999999999999999999 889999999999999999997666
Q ss_pred CCCChHHHHHHHHHHHhccCCCC
Q psy6098 354 SGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 354 ~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
+..|.+.++++++++.+|++++.
T Consensus 246 Ts~dreiqrTLMeLlnqmdgfd~ 268 (388)
T KOG0651|consen 246 TSSDREIQRTLMELLNQMDGFDT 268 (388)
T ss_pred cchhHHHHHHHHHHHHhhccchh
Confidence 67889999999999999999864
No 17
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=2e-29 Score=244.79 Aligned_cols=255 Identities=51% Similarity=0.860 Sum_probs=227.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccceeeccCCCceeeecCccccccccC
Q psy6098 92 ELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVT 171 (378)
Q Consensus 92 ~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~~i~~~~~~~~~~~~l~~~i~~~~l~ 171 (378)
.+......+......+....+.+...+..+.+++..+..++...+.+.+.+++...++..+.+..++++....++...+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~l~ 91 (389)
T PRK03992 12 ELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLIVATVLEVLDDGRVVVKSSGGPQFLVNVSPFIDREKLK 91 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCCCeEEEEECCCCEEEEeccccCCHhHCC
Confidence 34444555566666677777777788888888889999899999999999998888888888888888888888889999
Q ss_pred ccchhhcccchhhhhhhcCCCCchhhhhhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEe
Q psy6098 172 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 251 (378)
Q Consensus 172 ~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 251 (378)
++.++.+.+....+..++|...++.+..+.+...|+.+|++++|++++++++.+.+.+++.+++.+..+++.++.+++|+
T Consensus 92 ~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~ 171 (389)
T PRK03992 92 PGARVALNQQSLAIVEVLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLY 171 (389)
T ss_pred CCCEEEEcCcchhhhhcccccccchhheeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEE
Confidence 99999998888888899999998888888888999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHhhhcCceEEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhccccc
Q psy6098 252 GPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE 331 (378)
Q Consensus 252 Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (378)
||||||||++++++|..++.+++.++++++...|.|+++..++++|..+ +.
T Consensus 172 GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a-----------------------------~~ 222 (389)
T PRK03992 172 GPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELA-----------------------------RE 222 (389)
T ss_pred CCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHH-----------------------------Hh
Confidence 9999999999999999999999999999999999999999999999988 66
Q ss_pred CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCC
Q psy6098 332 HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 375 (378)
Q Consensus 332 ~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~ 375 (378)
+.|+||||||||++++.|.+...+.+...++.+.++|.+++++.
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 78999999999999999876655667788889999999998764
No 18
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.9e-31 Score=240.88 Aligned_cols=156 Identities=33% Similarity=0.434 Sum_probs=128.7
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
||-||||||||+||||+|++.+++|+.|.+|+|+.||+||+++.||++|+.||.++|| ||||||||++...+-....
T Consensus 189 LLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPs---IIFiDEIDAIg~kR~d~~t 265 (406)
T COG1222 189 LLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPS---IIFIDEIDAIGAKRFDSGT 265 (406)
T ss_pred EeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCe---EEEEechhhhhcccccCCC
Confidence 6889999999999999999999999999999999999999999999999999999999 9999999999987644332
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccccccccccccccc---cceeeccCCCce
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQRN----ELNAKVRMLREELQLLQEQGSYVGEVVKPMDKK---KVLVKVHPEGKF 157 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~~~----~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~---~~i~~~~~~~~~ 157 (378)
.+ +.++++.+.++..++..+....+ ..+++++-++ +++.|||||++.+..++|+. ..|+++|+.++
T Consensus 266 ~g---DrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LD---PALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM- 338 (406)
T COG1222 266 SG---DREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILD---PALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM- 338 (406)
T ss_pred Cc---hHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccC---hhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc-
Confidence 22 46777777776666665544321 2357788888 89999999999999999884 57889998876
Q ss_pred eeecCccccccccCc
Q psy6098 158 VVDIDKNIDINDVTP 172 (378)
Q Consensus 158 ~~~l~~~i~~~~l~~ 172 (378)
.+.++|+.+.+..
T Consensus 339 --~l~~dvd~e~la~ 351 (406)
T COG1222 339 --NLADDVDLELLAR 351 (406)
T ss_pred --cCccCcCHHHHHH
Confidence 4566777666543
No 19
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=2.8e-28 Score=235.69 Aligned_cols=250 Identities=52% Similarity=0.884 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccceeeccCCCceeeecCccccccccCccchh
Q psy6098 97 VAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRV 176 (378)
Q Consensus 97 l~~~~~~l~~l~~~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~~i~~~~~~~~~~~~l~~~i~~~~l~~~~~~ 176 (378)
...+...+..+......+...+..+++++..++.++...+++.+.+.+...+++...+..+++.+.+.++...+.++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v 87 (364)
T TIGR01242 8 IRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPLIVGTVLEVLDDNRVVVKSSTGPNFVVNVSAFIDRKSLKPGARV 87 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEecCCEEEEEeCCCCEEEEeccccCCHhHCCCCCEE
Confidence 34444455555555566777788888888999999999999999999988888888888888898899999999999999
Q ss_pred hcccchhhhhhhcCCCCchhhhhhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCC
Q psy6098 177 ALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGT 256 (378)
Q Consensus 177 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~ 256 (378)
.+.........++|...++....+.+...|..+|++++|+++++++|++.+.+++.+++.+..+++.++.+++|+|||||
T Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGt 167 (364)
T TIGR01242 88 ALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGT 167 (364)
T ss_pred EEcCCcceEEeecccccccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCC
Confidence 99888888888888888888888888899999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhhhcCceEEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeE
Q psy6098 257 GKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSI 336 (378)
Q Consensus 257 GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~v 336 (378)
|||++++++|+.++.+++.+.+.++...|.+++...+++.|..+ +...|+|
T Consensus 168 GKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a-----------------------------~~~~p~i 218 (364)
T TIGR01242 168 GKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELA-----------------------------KEKAPSI 218 (364)
T ss_pred CHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHH-----------------------------HhcCCcE
Confidence 99999999999999999999999998899999999999999877 5678999
Q ss_pred EEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCC
Q psy6098 337 IFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 375 (378)
Q Consensus 337 l~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~ 375 (378)
|||||+|+++..|.+...+.++..++.+.++|.+++++.
T Consensus 219 l~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 219 IFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred EEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 999999999999877777778888899999999998763
No 20
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.94 E-value=3.5e-25 Score=218.43 Aligned_cols=257 Identities=34% Similarity=0.566 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc-cccccceeeccCCCceeeecCcccccccc
Q psy6098 92 ELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKP-MDKKKVLVKVHPEGKFVVDIDKNIDINDV 170 (378)
Q Consensus 92 ~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~-l~~~~~i~~~~~~~~~~~~l~~~i~~~~l 170 (378)
++..++.++.....++..........+..++++++.+..|+...+.++.. .++..+.+ ...+.++.+.+++.++...+
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~~~~~l 83 (512)
T TIGR03689 5 ELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPSTYGTFLQTAIDDETAEV-FTAGRRMRVTVSPNVNAAEL 83 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEEeccCCCeEEE-EeCCceEEEEeCCCCCHHHC
Confidence 44555666666777788888888899999999999999888888888765 44444444 44566788899999999999
Q ss_pred Cccchhhcccchhhh--------------hhhcC---------------------------CC-----Cc----------
Q psy6098 171 TPNCRVALRNESYTL--------------HKILP---------------------------NK-----VD---------- 194 (378)
Q Consensus 171 ~~~~~~~~~~~~~~l--------------~~i~~---------------------------~~-----~~---------- 194 (378)
.++..+.+.+...-+ ..+.. .. .+
T Consensus 84 ~~g~~v~l~e~~~~v~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 163 (512)
T TIGR03689 84 VPGQTVRLNEALQVVEARDFETVGEIATLKEVLGDGRALVVDHSGEERVVKLAGALADELIRAGDSLLVDPKAGYAFEAV 163 (512)
T ss_pred CCCCEEEECCcceeeccCCCCCCCceEEEEEEeCCCeEEEEeCCCCeEEeehhhhhCHhhCCCCCEEEEcccchhhhhcC
Confidence 999888765321110 00000 00 00
Q ss_pred --hhhhhhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-
Q psy6098 195 --PLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC- 271 (378)
Q Consensus 195 --~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~- 271 (378)
........+..|+++|++|+|+++++++|++.+.+++.+++.+..+++.++.+++||||||||||++++++|+.++.
T Consensus 164 ~~~~~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 164 PKAEVEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CHhHHhcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 11233345678999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred ---------eEEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecC
Q psy6098 272 ---------TFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEI 342 (378)
Q Consensus 272 ---------~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEi 342 (378)
.++.+.++++..+|++++++.++.+|+.+.... ....|+|||||||
T Consensus 244 i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a-------------------------~~g~p~IIfIDEi 298 (512)
T TIGR03689 244 IGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKA-------------------------SDGRPVIVFFDEM 298 (512)
T ss_pred cccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHh-------------------------hcCCCceEEEehh
Confidence 267788889999999999999999998872110 2257999999999
Q ss_pred ccccCCCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 343 DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 343 d~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
|+++++|+... .+....+.+.++|..||+...
T Consensus 299 D~L~~~R~~~~--s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 299 DSIFRTRGSGV--SSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred hhhhcccCCCc--cchHHHHHHHHHHHHhccccc
Confidence 99999885321 122335677899999998753
No 21
>KOG0736|consensus
Probab=99.94 E-value=2.6e-28 Score=241.08 Aligned_cols=162 Identities=20% Similarity=0.252 Sum_probs=124.8
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
||-||||||||+||||+|.|++..|++|.++||+.+|+||||++||++|++||+.+|| ||||||+|++++.|+..++
T Consensus 709 LLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PC---VIFFDELDSlAP~RG~sGD 785 (953)
T KOG0736|consen 709 LLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPC---VIFFDELDSLAPNRGRSGD 785 (953)
T ss_pred EEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCe---EEEeccccccCccCCCCCC
Confidence 6789999999999999999999999999999999999999999999999999999999 9999999999999887777
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc----ceeeccCCCcee
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRR--LQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKK----VLVKVHPEGKFV 158 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~--l~~~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~----~i~~~~~~~~~~ 158 (378)
-++++++.+..-+.+++..... -.-+....+++++.++ ++|.|||||+.-+....++.. .+++..+++
T Consensus 786 SGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLD---pALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk--- 859 (953)
T KOG0736|consen 786 SGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLD---PALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK--- 859 (953)
T ss_pred ccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccC---hhhcCCCccceeEEecCCccHHHHHHHHHHHHHH---
Confidence 6766665544333333322211 0111334568888888 899999999999988877632 234433333
Q ss_pred eecCccccccccCccch
Q psy6098 159 VDIDKNIDINDVTPNCR 175 (378)
Q Consensus 159 ~~l~~~i~~~~l~~~~~ 175 (378)
..++++|+..+++..|.
T Consensus 860 FkLdedVdL~eiAk~cp 876 (953)
T KOG0736|consen 860 FKLDEDVDLVEIAKKCP 876 (953)
T ss_pred ccCCCCcCHHHHHhhCC
Confidence 24667777766665554
No 22
>KOG0739|consensus
Probab=99.93 E-value=2.7e-26 Score=205.06 Aligned_cols=143 Identities=45% Similarity=0.759 Sum_probs=129.7
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCc
Q psy6098 201 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 280 (378)
Q Consensus 201 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~ 280 (378)
.+.+-|.+.|+|+.|++.+|+.|++++.+|++.|++|.. .-.|-++++||||||||||.|+|++|...+.+|+.++.++
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 345678999999999999999999999999999999865 3455678999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 281 LVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 281 l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
|+++|.|++++.|.++|++| |.++|+|||+||||+++.+|++ +-...+
T Consensus 202 LvSKWmGESEkLVknLFemA-----------------------------Re~kPSIIFiDEiDslcg~r~e---nEseas 249 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMA-----------------------------RENKPSIIFIDEIDSLCGSRSE---NESEAS 249 (439)
T ss_pred HHHHHhccHHHHHHHHHHHH-----------------------------HhcCCcEEEeehhhhhccCCCC---CchHHH
Confidence 99999999999999999999 8999999999999999999954 344566
Q ss_pred HHHHHHHHHhccCCCC
Q psy6098 361 QRTMLELLNQLDGFEA 376 (378)
Q Consensus 361 ~~~~~~lL~~l~~~~~ 376 (378)
+|.-.++|.+|.|.|.
T Consensus 250 RRIKTEfLVQMqGVG~ 265 (439)
T KOG0739|consen 250 RRIKTEFLVQMQGVGN 265 (439)
T ss_pred HHHHHHHHHhhhcccc
Confidence 7888899999999875
No 23
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.7e-26 Score=230.72 Aligned_cols=120 Identities=30% Similarity=0.455 Sum_probs=95.5
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhhhcCCCCCc----ceeEeCCCCCchHHHHHHHhhhcCc---eEEEeccCccccc
Q psy6098 212 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPK----GVLLYGPPGTGKTLLARAVAHHTEC---TFIRVSGSELVQK 284 (378)
Q Consensus 212 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~ll~Gp~G~GKTtl~~~ia~~~~~---~~i~~~~~~l~~~ 284 (378)
.++||+++++.+.++|.. ...|+..+. .++|.||+|+|||-|+|++|..+.. ..|+++++++..+
T Consensus 492 rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred ceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 689999999999999876 344555433 6899999999999999999999984 4999999877544
Q ss_pred ccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHH
Q psy6098 285 FIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 364 (378)
Q Consensus 285 ~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~ 364 (378)
+ ..+++..+++.|.+++.....+++. |+++.+||+||||++ .+|.....+
T Consensus 564 H---------------sVSrLIGaPPGYVGyeeGG~LTEaV----Rr~PySViLlDEIEK-----------AHpdV~nil 613 (786)
T COG0542 564 H---------------SVSRLIGAPPGYVGYEEGGQLTEAV----RRKPYSVILLDEIEK-----------AHPDVFNLL 613 (786)
T ss_pred H---------------HHHHHhCCCCCCceeccccchhHhh----hcCCCeEEEechhhh-----------cCHHHHHHH
Confidence 2 5666777778888877755555555 788999999999887 567777777
Q ss_pred HHHHH
Q psy6098 365 LELLN 369 (378)
Q Consensus 365 ~~lL~ 369 (378)
+|+|.
T Consensus 614 LQVlD 618 (786)
T COG0542 614 LQVLD 618 (786)
T ss_pred HHHhc
Confidence 77765
No 24
>KOG0738|consensus
Probab=99.93 E-value=2.7e-26 Score=211.66 Aligned_cols=147 Identities=45% Similarity=0.659 Sum_probs=133.3
Q ss_pred hhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEecc
Q psy6098 199 LMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 278 (378)
Q Consensus 199 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~ 278 (378)
+..+..-|.+.|+||.|++++|+-|++++..|+..|+.|+.+ ..|-++++++||||||||+|||++|.+++.+|+.++.
T Consensus 200 rdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSs 278 (491)
T KOG0738|consen 200 RDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSS 278 (491)
T ss_pred HHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEech
Confidence 334556688999999999999999999999999999998763 4666799999999999999999999999999999999
Q ss_pred CcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 279 SELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 279 ~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
+.+.++|-|++++.|+-+|++| |-++|++|||||||+|+++|++ ++-+.
T Consensus 279 stltSKwRGeSEKlvRlLFemA-----------------------------RfyAPStIFiDEIDslcs~RG~--s~EHE 327 (491)
T KOG0738|consen 279 STLTSKWRGESEKLVRLLFEMA-----------------------------RFYAPSTIFIDEIDSLCSQRGG--SSEHE 327 (491)
T ss_pred hhhhhhhccchHHHHHHHHHHH-----------------------------HHhCCceeehhhHHHHHhcCCC--ccchh
Confidence 9999999999999999999999 7889999999999999999965 45567
Q ss_pred HHHHHHHHHHHhccCCCCC
Q psy6098 359 EVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~~~~ 377 (378)
.+++.-.+||.+|||.+.+
T Consensus 328 aSRRvKsELLvQmDG~~~t 346 (491)
T KOG0738|consen 328 ASRRVKSELLVQMDGVQGT 346 (491)
T ss_pred HHHHHHHHHHHHhhccccc
Confidence 7788889999999999765
No 25
>KOG0733|consensus
Probab=99.93 E-value=5.5e-26 Score=219.70 Aligned_cols=138 Identities=41% Similarity=0.721 Sum_probs=127.7
Q ss_pred CCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCccccccc
Q psy6098 207 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFI 286 (378)
Q Consensus 207 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~ 286 (378)
++.|.++||++.+..++.+.+.. .++|+.|.++|+.|+++++|+||||||||+||++|||.++.+|+.+++.++++.+.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 56799999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHH
Q psy6098 287 GEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLE 366 (378)
Q Consensus 287 ~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~ 366 (378)
|++++.++++|..| +...|||+||||||+|+++|.+ +.-.-.+|.+.|
T Consensus 265 GESEkkiRelF~~A-----------------------------~~~aPcivFiDeIDAI~pkRe~---aqreMErRiVaQ 312 (802)
T KOG0733|consen 265 GESEKKIRELFDQA-----------------------------KSNAPCIVFIDEIDAITPKREE---AQREMERRIVAQ 312 (802)
T ss_pred cccHHHHHHHHHHH-----------------------------hccCCeEEEeecccccccchhh---HHHHHHHHHHHH
Confidence 99999999999999 7899999999999999999954 233345788899
Q ss_pred HHHhccCCCCC
Q psy6098 367 LLNQLDGFEAT 377 (378)
Q Consensus 367 lL~~l~~~~~~ 377 (378)
||.-||+....
T Consensus 313 Llt~mD~l~~~ 323 (802)
T KOG0733|consen 313 LLTSMDELSNE 323 (802)
T ss_pred HHHhhhccccc
Confidence 99999987643
No 26
>KOG0734|consensus
Probab=99.93 E-value=6.4e-26 Score=216.22 Aligned_cols=139 Identities=47% Similarity=0.786 Sum_probs=129.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccc
Q psy6098 206 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKF 285 (378)
Q Consensus 206 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~ 285 (378)
..++|+|+-|+|++|+++++++.+ ++.|+.|.++|-+-|++|+|.||||||||+|+|++||+.+.+|++..|+++-++|
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 456799999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHH
Q psy6098 286 IGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML 365 (378)
Q Consensus 286 ~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~ 365 (378)
+|.+.+.||++|..| ++.+||||||||||+++.+|... ... .....++
T Consensus 378 VGvGArRVRdLF~aA-----------------------------k~~APcIIFIDEiDavG~kR~~~--~~~-y~kqTlN 425 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAA-----------------------------KARAPCIIFIDEIDAVGGKRNPS--DQH-YAKQTLN 425 (752)
T ss_pred hcccHHHHHHHHHHH-----------------------------HhcCCeEEEEechhhhcccCCcc--HHH-HHHHHHH
Confidence 999999999999999 88899999999999999999532 222 6789999
Q ss_pred HHHHhccCCCCC
Q psy6098 366 ELLNQLDGFEAT 377 (378)
Q Consensus 366 ~lL~~l~~~~~~ 377 (378)
|+|.+||||...
T Consensus 426 QLLvEmDGF~qN 437 (752)
T KOG0734|consen 426 QLLVEMDGFKQN 437 (752)
T ss_pred HHHHHhcCcCcC
Confidence 999999999754
No 27
>KOG0730|consensus
Probab=99.93 E-value=8.2e-28 Score=235.15 Aligned_cols=153 Identities=24% Similarity=0.351 Sum_probs=121.2
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
|+-||||||||++|||+|++++++|++|++++|+++|+||||+.+|++|+.||+.+|| |+||||||+++.+|+|...
T Consensus 472 LlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~---IiFfDEiDsi~~~R~g~~~ 548 (693)
T KOG0730|consen 472 LLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPC---IIFFDEIDALAGSRGGSSS 548 (693)
T ss_pred EEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCe---EEehhhHHhHhhccCCCcc
Confidence 6789999999999999999999999999999999999999999999999999999999 9999999999999886554
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcccccccccccccccc---ceeeccCCCce
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQRN----ELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKK---VLVKVHPEGKF 157 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~~~----~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~---~i~~~~~~~~~ 157 (378)
....+.++++...|+.+....+ ..+++++.++ .++.+||||++-+..++|+.+ +|++.+..++
T Consensus 549 ------~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID---~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm- 618 (693)
T KOG0730|consen 549 ------GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMID---PALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM- 618 (693)
T ss_pred ------chHHHHHHHHHHHcccccccCcEEEEeccCChhhcC---HHHcCCcccceeEeecCccHHHHHHHHHHHHhcC-
Confidence 2222333444444444444322 3456777777 789999999999999999854 5666666654
Q ss_pred eeecCccccccccCc
Q psy6098 158 VVDIDKNIDINDVTP 172 (378)
Q Consensus 158 ~~~l~~~i~~~~l~~ 172 (378)
++.++++.+.+..
T Consensus 619 --p~~~~vdl~~La~ 631 (693)
T KOG0730|consen 619 --PFSEDVDLEELAQ 631 (693)
T ss_pred --CCCccccHHHHHH
Confidence 4455666666553
No 28
>KOG0738|consensus
Probab=99.93 E-value=9.6e-27 Score=214.66 Aligned_cols=135 Identities=28% Similarity=0.320 Sum_probs=103.9
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
|+.||||||||+||||+|.|++.+||.|+.+.|+|||.||||+.||-+|++||.++|+ +|||||||+||.++++...
T Consensus 249 Lm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPS---tIFiDEIDslcs~RG~s~E 325 (491)
T KOG0738|consen 249 LMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPS---TIFIDEIDSLCSQRGGSSE 325 (491)
T ss_pred eeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCc---eeehhhHHHHHhcCCCccc
Confidence 6789999999999999999999999999999999999999999999999999999999 9999999999999887532
Q ss_pred hhhhhHHHHHHHH-HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhccccccccccccccc---cceeecc
Q psy6098 85 YYVTKIEELQLIV-AEKEQNLRRLQAQRNE--------LNAKVRMLREELQLLQEQGSYVGEVVKPMDKK---KVLVKVH 152 (378)
Q Consensus 85 ~~~~~~~~l~~~l-~~~~~~l~~l~~~~~~--------l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~---~~i~~~~ 152 (378)
.+..+++ ..+..+|..+....+. .++-++.++ ++++| ||...++.++|+. .+++++.
T Consensus 326 ------HEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiD---EAlrR--RlEKRIyIPLP~~~~R~~Li~~~ 394 (491)
T KOG0738|consen 326 ------HEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDID---EALRR--RLEKRIYIPLPDAEARSALIKIL 394 (491)
T ss_pred ------hhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchH---HHHHH--HHhhheeeeCCCHHHHHHHHHHh
Confidence 2222222 3334444444333222 245667777 56655 7888899998874 3444444
Q ss_pred C
Q psy6098 153 P 153 (378)
Q Consensus 153 ~ 153 (378)
.
T Consensus 395 l 395 (491)
T KOG0738|consen 395 L 395 (491)
T ss_pred h
Confidence 3
No 29
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.93 E-value=7.1e-25 Score=228.85 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=68.5
Q ss_pred CCCCCCCCCCChhHHHHHHHhhcc----------CceEEEecccccc--ccccchhHHHHHHHHHHHHhcCCCCCceEEE
Q psy6098 2 LKPLHPTWIVSGKTLLARAVAHHT----------ECTFIRVSGSELV--QKFIGEGSRMVRELFVMARCKGSSRGTEFFT 69 (378)
Q Consensus 2 ~~~~~~~pPGtGKt~~a~~~a~~~----------~~~~~~v~~~~~~--~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~ 69 (378)
.||+|+||||||||++|+++|..+ +.+|+.++.+.++ .+|.|+.|++++.+|++|+...++ ||||
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~---ILfi 280 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNA---ILFI 280 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCe---EEEE
Confidence 589999999999999999999987 7899999999998 589999999999999999876666 9999
Q ss_pred eehhhhhhcc
Q psy6098 70 MDVDEAIKSS 79 (378)
Q Consensus 70 DEid~~~~~~ 79 (378)
||+++++...
T Consensus 281 DEih~l~~~g 290 (731)
T TIGR02639 281 DEIHTIVGAG 290 (731)
T ss_pred ecHHHHhccC
Confidence 9999999754
No 30
>KOG0731|consensus
Probab=99.91 E-value=1.6e-24 Score=218.01 Aligned_cols=143 Identities=47% Similarity=0.817 Sum_probs=133.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCccccc
Q psy6098 205 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 284 (378)
Q Consensus 205 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~ 284 (378)
-..++|.|+.|++++|++|.|.+.+ ++.|+.+..+|.+.|++++|+||||||||.|||++||+.+.+|+.++|++++.+
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 3448899999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCC-CCCCChHHHHH
Q psy6098 285 FIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIES-GSGGDSEVQRT 363 (378)
Q Consensus 285 ~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~-~~~~d~~~~~~ 363 (378)
+++.....++++|..| |.+.|||||+||||+++..|++. ..+.+.+....
T Consensus 384 ~~g~~asrvr~lf~~a-----------------------------r~~aP~iifideida~~~~r~G~~~~~~~~e~e~t 434 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLA-----------------------------RKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQT 434 (774)
T ss_pred hcccchHHHHHHHHHh-----------------------------hccCCeEEEecccccccccccccccCCCChHHHHH
Confidence 9999999999999999 88999999999999999999643 33556677889
Q ss_pred HHHHHHhccCCCCC
Q psy6098 364 MLELLNQLDGFEAT 377 (378)
Q Consensus 364 ~~~lL~~l~~~~~~ 377 (378)
++|+|.+|||+..+
T Consensus 435 lnQll~emDgf~~~ 448 (774)
T KOG0731|consen 435 LNQLLVEMDGFETS 448 (774)
T ss_pred HHHHHHHhcCCcCC
Confidence 99999999999865
No 31
>KOG0734|consensus
Probab=99.91 E-value=6.1e-26 Score=216.35 Aligned_cols=153 Identities=24% Similarity=0.309 Sum_probs=114.6
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
||+||||||||+||||+|.|.+++|++.++|++-..|+|.++++||++|+.|++++|| ||||||||++..+|.....
T Consensus 341 LLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APc---IIFIDEiDavG~kR~~~~~ 417 (752)
T KOG0734|consen 341 LLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPC---IIFIDEIDAVGGKRNPSDQ 417 (752)
T ss_pred EEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCe---EEEEechhhhcccCCccHH
Confidence 6899999999999999999999999999999999999999999999999999999999 9999999999876433211
Q ss_pred -hhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcccccccccccccc---ccceeeccCCCc
Q psy6098 85 -YYVTKIEELQLIVAEKEQNLRRLQA----QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDK---KKVLVKVHPEGK 156 (378)
Q Consensus 85 -~~~~~~~~l~~~l~~~~~~l~~l~~----~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~---~~~i~~~~~~~~ 156 (378)
+.. ..++++..+++.+.- .....++.++.++ .+|.|||||++.+..+.|+ +.+|++.+..+.
T Consensus 418 ~y~k-------qTlNQLLvEmDGF~qNeGiIvigATNfpe~LD---~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki 487 (752)
T KOG0734|consen 418 HYAK-------QTLNQLLVEMDGFKQNEGIIVIGATNFPEALD---KALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI 487 (752)
T ss_pred HHHH-------HHHHHHHHHhcCcCcCCceEEEeccCChhhhh---HHhcCCCccceeEecCCCCcccHHHHHHHHHhcC
Confidence 222 223333333332211 1222345666666 7899999999999999887 566777765553
Q ss_pred eeeecCccccccccCcc
Q psy6098 157 FVVDIDKNIDINDVTPN 173 (378)
Q Consensus 157 ~~~~l~~~i~~~~l~~~ 173 (378)
.+..+||...++.+
T Consensus 488 ---~~~~~VD~~iiARG 501 (752)
T KOG0734|consen 488 ---PLDEDVDPKIIARG 501 (752)
T ss_pred ---CcccCCCHhHhccC
Confidence 33456665555443
No 32
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.90 E-value=1.7e-24 Score=223.61 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=66.6
Q ss_pred CCCCCCCCCCChhHHHHHHHhhcc----------CceEEEecccccc--ccccchhHHHHHHHHHHHHhcCCCCCceEEE
Q psy6098 2 LKPLHPTWIVSGKTLLARAVAHHT----------ECTFIRVSGSELV--QKFIGEGSRMVRELFVMARCKGSSRGTEFFT 69 (378)
Q Consensus 2 ~~~~~~~pPGtGKt~~a~~~a~~~----------~~~~~~v~~~~~~--~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~ 69 (378)
.+|+++||||||||++|+++|..+ ++.++.++.+.++ .+|.|+.|++++.+|+.+++..++ ||||
T Consensus 208 ~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~---ILfI 284 (758)
T PRK11034 208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNS---ILFI 284 (758)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCC---EEEe
Confidence 589999999999999999999764 6788888888887 579999999999999999876555 9999
Q ss_pred eehhhhhhccC
Q psy6098 70 MDVDEAIKSSE 80 (378)
Q Consensus 70 DEid~~~~~~~ 80 (378)
||++.++....
T Consensus 285 DEIh~L~g~g~ 295 (758)
T PRK11034 285 DEIHTIIGAGA 295 (758)
T ss_pred ccHHHHhccCC
Confidence 99999987643
No 33
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.90 E-value=1.3e-23 Score=221.74 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=67.2
Q ss_pred CCCCCCCCCCChhHHHHHHHhhcc----------CceEEEecccccc--ccccchhHHHHHHHHHHHHhcCCCCCceEEE
Q psy6098 2 LKPLHPTWIVSGKTLLARAVAHHT----------ECTFIRVSGSELV--QKFIGEGSRMVRELFVMARCKGSSRGTEFFT 69 (378)
Q Consensus 2 ~~~~~~~pPGtGKt~~a~~~a~~~----------~~~~~~v~~~~~~--~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~ 69 (378)
-||+++||||||||++|+++|..+ +.+|++++.+.++ ++|.||.|++++.+|+.++...++ ||||
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~---ILfi 277 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNI---ILVI 277 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCe---EEEE
Confidence 489999999999999999999886 4799999999988 579999999999999999875555 9999
Q ss_pred eehhhhhhcc
Q psy6098 70 MDVDEAIKSS 79 (378)
Q Consensus 70 DEid~~~~~~ 79 (378)
||+++++...
T Consensus 278 DEih~l~~~g 287 (821)
T CHL00095 278 DEVHTLIGAG 287 (821)
T ss_pred ecHHHHhcCC
Confidence 9999998653
No 34
>KOG0728|consensus
Probab=99.89 E-value=4.8e-24 Score=186.59 Aligned_cols=154 Identities=40% Similarity=0.516 Sum_probs=119.2
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
++-||||||||+||||+|....++|+.|++|+|+.+|+||+.+.+|++|-.||.++|+ |+|.||||++..++....+
T Consensus 185 lLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehaps---iifmdeidsigs~r~e~~~ 261 (404)
T KOG0728|consen 185 LLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS---IIFMDEIDSIGSSRVESGS 261 (404)
T ss_pred EEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCc---eEeeecccccccccccCCC
Confidence 5789999999999999999999999999999999999999999999999999999999 9999999999876532222
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhccccccccccccccc---cceeeccCCCce
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQRNE----LNAKVRMLREELQLLQEQGSYVGEVVKPMDKK---KVLVKVHPEGKF 157 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~~~~----l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~---~~i~~~~~~~~~ 157 (378)
.+ +.++++.+..+.-++..+.+..+. .+++++-++ +++.+|||+++.+.-+.|++ ..++++|++++
T Consensus 262 gg---dsevqrtmlellnqldgfeatknikvimatnridild---~allrpgridrkiefp~p~e~ar~~ilkihsrkm- 334 (404)
T KOG0728|consen 262 GG---DSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILD---PALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM- 334 (404)
T ss_pred Cc---cHHHHHHHHHHHHhccccccccceEEEEecccccccc---HhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh-
Confidence 21 344555554444444455444332 246666666 78999999999999887774 35788888775
Q ss_pred eeecCcccccccc
Q psy6098 158 VVDIDKNIDINDV 170 (378)
Q Consensus 158 ~~~l~~~i~~~~l 170 (378)
++...|+...+
T Consensus 335 --nl~rgi~l~ki 345 (404)
T KOG0728|consen 335 --NLTRGINLRKI 345 (404)
T ss_pred --chhcccCHHHH
Confidence 34555655544
No 35
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.89 E-value=2.6e-23 Score=182.89 Aligned_cols=138 Identities=37% Similarity=0.638 Sum_probs=119.3
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCccc
Q psy6098 203 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV 282 (378)
Q Consensus 203 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~ 282 (378)
+.+++.+++|++|++++|..- ..|..++..|+.| +=+.|+.++||||||||||+++|++|+..+.+++.++..++.
T Consensus 113 e~~~~it~ddViGqEeAK~kc-rli~~yLenPe~F---g~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li 188 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKC-RLIMEYLENPERF---GDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI 188 (368)
T ss_pred hhhccccHhhhhchHHHHHHH-HHHHHHhhChHHh---cccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHH
Confidence 457889999999999999884 4444457777654 567799999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 283 QKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 283 ~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
..|+|...+.++++++.| +..+|||+||||+|+|+-+|.- ..+-..+..
T Consensus 189 GehVGdgar~Ihely~rA-----------------------------~~~aPcivFiDE~DAiaLdRry--QelRGDVsE 237 (368)
T COG1223 189 GEHVGDGARRIHELYERA-----------------------------RKAAPCIVFIDELDAIALDRRY--QELRGDVSE 237 (368)
T ss_pred HHHhhhHHHHHHHHHHHH-----------------------------HhcCCeEEEehhhhhhhhhhhH--HHhcccHHH
Confidence 999999999999999999 7889999999999999988743 233334567
Q ss_pred HHHHHHHhccCCC
Q psy6098 363 TMLELLNQLDGFE 375 (378)
Q Consensus 363 ~~~~lL~~l~~~~ 375 (378)
.++.||++|||..
T Consensus 238 iVNALLTelDgi~ 250 (368)
T COG1223 238 IVNALLTELDGIK 250 (368)
T ss_pred HHHHHHHhccCcc
Confidence 8999999999975
No 36
>KOG0739|consensus
Probab=99.88 E-value=1.2e-23 Score=188.06 Aligned_cols=136 Identities=25% Similarity=0.314 Sum_probs=98.3
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
||-|||||||+.||+|+|.+.|.+|++|+.|||+|+|.||||+.|+.+|++||.+.|+ ||||||||++|.++.+-.+
T Consensus 170 LLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPS---IIFiDEiDslcg~r~enEs 246 (439)
T KOG0739|consen 170 LLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPS---IIFIDEIDSLCGSRSENES 246 (439)
T ss_pred EEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCc---EEEeehhhhhccCCCCCch
Confidence 6889999999999999999999999999999999999999999999999999999999 9999999999987654322
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccccccccccccccccc---eeeccCC
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQ-----RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKV---LVKVHPE 154 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~-----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~~---i~~~~~~ 154 (378)
.-. .+.--.+..+|.....- ....++.++.++. +++| ||...+..++++..+ +.++|-+
T Consensus 247 eas------RRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDs---AIRR--RFekRIYIPLPe~~AR~~MF~lhlG 313 (439)
T KOG0739|consen 247 EAS------RRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDS---AIRR--RFEKRIYIPLPEAHARARMFKLHLG 313 (439)
T ss_pred HHH------HHHHHHHHHhhhccccCCCceEEEecCCCchhHHH---HHHH--HhhcceeccCCcHHHhhhhheeccC
Confidence 111 11111111222221111 1122455666663 3333 788999999988543 4455544
No 37
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.1e-22 Score=201.66 Aligned_cols=147 Identities=44% Similarity=0.783 Sum_probs=133.9
Q ss_pred hhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEecc
Q psy6098 199 LMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 278 (378)
Q Consensus 199 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~ 278 (378)
....+.-..++|.|+.|.+++|+++.+.+.. ++.|..+..+|..-|++++|+||||||||+|+|++||..+.+|+.+++
T Consensus 138 k~~~~~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSG 216 (596)
T COG0465 138 KLYLEDQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 216 (596)
T ss_pred HHhcccccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccc
Confidence 3344445668999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred CcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 279 SELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 279 ~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
++++.+|+|-+...+|++|.+| +.+.||||||||||+++..|+....+...
T Consensus 217 S~FVemfVGvGAsRVRdLF~qA-----------------------------kk~aP~IIFIDEiDAvGr~Rg~g~Gggnd 267 (596)
T COG0465 217 SDFVEMFVGVGASRVRDLFEQA-----------------------------KKNAPCIIFIDEIDAVGRQRGAGLGGGND 267 (596)
T ss_pred hhhhhhhcCCCcHHHHHHHHHh-----------------------------hccCCCeEEEehhhhcccccCCCCCCCch
Confidence 9999999999999999999999 88899999999999999999754444455
Q ss_pred HHHHHHHHHHHhccCCC
Q psy6098 359 EVQRTMLELLNQLDGFE 375 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~~ 375 (378)
+....++|+|.+|||++
T Consensus 268 erEQTLNQlLvEmDGF~ 284 (596)
T COG0465 268 EREQTLNQLLVEMDGFG 284 (596)
T ss_pred HHHHHHHHHHhhhccCC
Confidence 66789999999999998
No 38
>KOG0727|consensus
Probab=99.87 E-value=1.1e-23 Score=184.42 Aligned_cols=133 Identities=32% Similarity=0.432 Sum_probs=101.8
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
|+-|||||||||||+|+|+...+.|+.|.+|+++.||.||+.+++|++|..|+.++|+ |+||||+|++...+=....
T Consensus 193 llygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenaps---iifideidaiatkrfdaqt 269 (408)
T KOG0727|consen 193 LLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPS---IIFIDEIDAIATKRFDAQT 269 (408)
T ss_pred EEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCc---EEEeehhhhHhhhhccccc
Confidence 6789999999999999999999999999999999999999999999999999999999 9999999999876422111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcccccccccccccccc
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQRN----ELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKK 146 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~~~----~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~ 146 (378)
. .+++++..+..+..+|..+.-..+ -.+++.+-++ +++.+|||+++.+.-+++++.
T Consensus 270 g---adrevqril~ellnqmdgfdq~~nvkvimatnradtld---pallrpgrldrkiefplpdrr 329 (408)
T KOG0727|consen 270 G---ADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLD---PALLRPGRLDRKIEFPLPDRR 329 (408)
T ss_pred c---ccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccC---HhhcCCccccccccCCCCchh
Confidence 0 123444444333333333322111 1235555565 799999999999999988854
No 39
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.87 E-value=1.4e-21 Score=205.72 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=64.9
Q ss_pred CCCCCCCCCCChhHHHHHHHhhcc----------CceEEEeccccccc--cccchhHHHHHHHHHHHHhcCCCCCceEEE
Q psy6098 2 LKPLHPTWIVSGKTLLARAVAHHT----------ECTFIRVSGSELVQ--KFIGEGSRMVRELFVMARCKGSSRGTEFFT 69 (378)
Q Consensus 2 ~~~~~~~pPGtGKt~~a~~~a~~~----------~~~~~~v~~~~~~~--~~~Gese~~~~~~f~~a~~~~~~~~~ilf~ 69 (378)
.+|+|+||||||||++|+.+|..+ +.+++.++.+.+++ +|.|+.|++++.+|++++... .+.||||
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~--~~~ILfI 286 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASP--QPIILFI 286 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcC--CCeEEEE
Confidence 589999999999999999999876 36788999988874 699999999999999997532 2459999
Q ss_pred eehhhhhhc
Q psy6098 70 MDVDEAIKS 78 (378)
Q Consensus 70 DEid~~~~~ 78 (378)
||+++++..
T Consensus 287 DEih~l~~~ 295 (852)
T TIGR03345 287 DEAHTLIGA 295 (852)
T ss_pred eChHHhccC
Confidence 999999864
No 40
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.86 E-value=4.1e-21 Score=202.71 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=65.2
Q ss_pred CCCCCCCCCCChhHHHHHHHhhcc----------CceEEEecccccc--ccccchhHHHHHHHHHHHHh-cCCCCCceEE
Q psy6098 2 LKPLHPTWIVSGKTLLARAVAHHT----------ECTFIRVSGSELV--QKFIGEGSRMVRELFVMARC-KGSSRGTEFF 68 (378)
Q Consensus 2 ~~~~~~~pPGtGKt~~a~~~a~~~----------~~~~~~v~~~~~~--~~~~Gese~~~~~~f~~a~~-~~~~~~~ilf 68 (378)
-+|+++||||||||++|+++|..+ +.+++.++.+.++ .+|.|+.|++++.+|+.+.+ ..++ |||
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~---ILf 276 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNV---ILF 276 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCe---EEE
Confidence 489999999999999999999987 7899999999887 66999999999999998654 3344 999
Q ss_pred Eeehhhhhhc
Q psy6098 69 TMDVDEAIKS 78 (378)
Q Consensus 69 ~DEid~~~~~ 78 (378)
|||+++++..
T Consensus 277 IDEih~l~~~ 286 (857)
T PRK10865 277 IDELHTMVGA 286 (857)
T ss_pred EecHHHhccC
Confidence 9999999844
No 41
>KOG0729|consensus
Probab=99.86 E-value=3.6e-23 Score=182.61 Aligned_cols=141 Identities=35% Similarity=0.411 Sum_probs=106.5
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhcc--CCC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSS--EGF 82 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~--~g~ 82 (378)
++-||||||||+.|||+|+..+++|+.|-+|+|+.||+||+++.+|++|++||....| |+||||||++...+ +|.
T Consensus 215 llygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkkac---iiffdeidaiggarfddg~ 291 (435)
T KOG0729|consen 215 LLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKAC---IIFFDEIDAIGGARFDDGA 291 (435)
T ss_pred EEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceE---EEEeeccccccCccccCCC
Confidence 5789999999999999999999999999999999999999999999999999988888 99999999998664 454
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccccccccccccc---ccceeeccCCC
Q psy6098 83 KPYYVTKIEELQLIVAEKEQNLRRLQAQ----RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDK---KKVLVKVHPEG 155 (378)
Q Consensus 83 ~~~~~~~~~~l~~~l~~~~~~l~~l~~~----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~---~~~i~~~~~~~ 155 (378)
.... +++..+..+-.++..+... ..-..++++-++ +++.+|||+++.+.-.+++ +.-+.++|...
T Consensus 292 ggdn-----evqrtmleli~qldgfdprgnikvlmatnrpdtld---pallrpgrldrkvef~lpdlegrt~i~kihaks 363 (435)
T KOG0729|consen 292 GGDN-----EVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLD---PALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS 363 (435)
T ss_pred CCcH-----HHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcC---HhhcCCcccccceeccCCcccccceeEEEeccc
Confidence 4432 2222222221111111111 001135556666 7999999999999888776 56688888766
Q ss_pred c
Q psy6098 156 K 156 (378)
Q Consensus 156 ~ 156 (378)
+
T Consensus 364 m 364 (435)
T KOG0729|consen 364 M 364 (435)
T ss_pred c
Confidence 5
No 42
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.5e-23 Score=203.19 Aligned_cols=152 Identities=23% Similarity=0.362 Sum_probs=121.6
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccC-CCC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSE-GFK 83 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~-g~~ 83 (378)
+++||||||||+||||+|.+.+++|+++|+|+++..|+|-.++++|++|..|++++|| |+||||||++.+.+. |+.
T Consensus 187 lLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~---IIFIDEiDAvGr~Rg~g~G 263 (596)
T COG0465 187 LLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPC---IIFIDEIDAVGRQRGAGLG 263 (596)
T ss_pred eEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCC---eEEEehhhhcccccCCCCC
Confidence 6899999999999999999999999999999999999999999999999999999999 999999999998874 322
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccccccccccccc---ccceeeccCCCc
Q psy6098 84 PYYVTKIEELQLIVAEKEQNLRRLQAQ----RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDK---KKVLVKVHPEGK 156 (378)
Q Consensus 84 ~~~~~~~~~l~~~l~~~~~~l~~l~~~----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~---~~~i~~~~~~~~ 156 (378)
. + .++.+..++++...++.+... ....+++++-++ +++.||+||++.+...+++ ++.++++|....
T Consensus 264 g-g---nderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD---~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~ 336 (596)
T COG0465 264 G-G---NDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD---PALLRPGRFDRQILVELPDIKGREQILKVHAKNK 336 (596)
T ss_pred C-C---chHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch---HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcC
Confidence 2 1 255556667777777666521 122356777777 8999999999999998887 567888886654
Q ss_pred eeeecCccccccc
Q psy6098 157 FVVDIDKNIDIND 169 (378)
Q Consensus 157 ~~~~l~~~i~~~~ 169 (378)
. +.+.++...
T Consensus 337 ~---l~~~Vdl~~ 346 (596)
T COG0465 337 P---LAEDVDLKK 346 (596)
T ss_pred C---CCCcCCHHH
Confidence 3 334455443
No 43
>KOG0735|consensus
Probab=99.86 E-value=3e-23 Score=203.74 Aligned_cols=134 Identities=23% Similarity=0.247 Sum_probs=105.3
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
||-||||||||+||-|+|..++..|++|.++||++||+|.||++||++|.+|+..+|| ||||||.|+++++|+--..
T Consensus 705 LLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PC---iLFFDEfdSiAPkRGhDsT 781 (952)
T KOG0735|consen 705 LLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPC---ILFFDEFDSIAPKRGHDST 781 (952)
T ss_pred EEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCe---EEEeccccccCcccCCCCC
Confidence 6789999999999999999999999999999999999999999999999999999999 9999999999998764332
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccccccccccccccccceee
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQ----RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVK 150 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~~i~~ 150 (378)
.. .++ .++++..+++..... .-..+.+++.++ +++.||||+++-+.-.+|++.+.+.
T Consensus 782 GV--TDR----VVNQlLTelDG~Egl~GV~i~aaTsRpdliD---pALLRpGRlD~~v~C~~P~~~eRl~ 842 (952)
T KOG0735|consen 782 GV--TDR----VVNQLLTELDGAEGLDGVYILAATSRPDLID---PALLRPGRLDKLVYCPLPDEPERLE 842 (952)
T ss_pred Cc--hHH----HHHHHHHhhccccccceEEEEEecCCccccC---HhhcCCCccceeeeCCCCCcHHHHH
Confidence 22 111 122222233222221 112356777777 8999999999999999988765443
No 44
>KOG0731|consensus
Probab=99.85 E-value=1.4e-22 Score=204.23 Aligned_cols=143 Identities=26% Similarity=0.355 Sum_probs=113.0
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCC-CC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEG-FK 83 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g-~~ 83 (378)
||.||||||||+||||+|.|.|++|+.|++||++..++|..+.++|++|..||.++|| |+||||||++...+.| ..
T Consensus 348 LL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~---iifideida~~~~r~G~~~ 424 (774)
T KOG0731|consen 348 LLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPS---IIFIDEIDAVGRKRGGKGT 424 (774)
T ss_pred EEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCe---EEEeccccccccccccccc
Confidence 6899999999999999999999999999999999999999999999999999999999 9999999999988854 22
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcccccccccccccc---ccceeeccCCCc
Q psy6098 84 PYYVTKIEELQLIVAEKEQNLRRLQAQRN----ELNAKVRMLREELQLLQEQGSYVGEVVKPMDK---KKVLVKVHPEGK 156 (378)
Q Consensus 84 ~~~~~~~~~l~~~l~~~~~~l~~l~~~~~----~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~---~~~i~~~~~~~~ 156 (378)
...+ .+-+..++++...++.+..... ..+++++.++ .++.|||||++.+...+|+ +..|.+.|....
T Consensus 425 ~~~~---~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld---~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~ 498 (774)
T KOG0731|consen 425 GGGQ---DEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD---PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKK 498 (774)
T ss_pred CCCC---hHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC---HHhcCCCccccceeccCCchhhhHHHHHHHhhcc
Confidence 2222 3334445555555555543322 2345666666 7899999999999888776 445667775543
No 45
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.84 E-value=2.2e-22 Score=187.63 Aligned_cols=74 Identities=20% Similarity=0.104 Sum_probs=69.3
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhc-----CCCCCceEEEeehhhhhhcc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCK-----GSSRGTEFFTMDVDEAIKSS 79 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~-----~~~~~~ilf~DEid~~~~~~ 79 (378)
++-||||||||++||++|+++|++|+.+++++|.++|+||+|+++|++|..|++. +|| ||||||||++++.+
T Consensus 152 lL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPc---VLFIDEIDA~~g~r 228 (413)
T PLN00020 152 GIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMS---CLFINDLDAGAGRF 228 (413)
T ss_pred EeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCe---EEEEehhhhcCCCC
Confidence 3579999999999999999999999999999999999999999999999999865 588 99999999999887
Q ss_pred CC
Q psy6098 80 EG 81 (378)
Q Consensus 80 ~g 81 (378)
++
T Consensus 229 ~~ 230 (413)
T PLN00020 229 GT 230 (413)
T ss_pred CC
Confidence 64
No 46
>KOG0726|consensus
Probab=99.84 E-value=2.5e-22 Score=179.26 Aligned_cols=153 Identities=27% Similarity=0.389 Sum_probs=113.9
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
.|.|+||||||+||+|+|++..++|+.|-+|+|+.+|.|+..+.+|++|..|..++|+ |+||||||++...+-...+
T Consensus 223 IlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apS---IvFiDEIdAiGtKRyds~S 299 (440)
T KOG0726|consen 223 ILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPS---IVFIDEIDAIGTKRYDSNS 299 (440)
T ss_pred EEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCc---eEEeehhhhhccccccCCC
Confidence 4789999999999999999999999999999999999999999999999999999999 9999999999988766555
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccccccccccccccc---cceeeccCCCce
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQ----RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKK---KVLVKVHPEGKF 157 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~---~~i~~~~~~~~~ 157 (378)
+++ .++++.+..+.-++..+... ..-.+++++.++ +++.||||+++.+.-+++++ +.|..+|...+.
T Consensus 300 gge---rEiQrtmLELLNQldGFdsrgDvKvimATnrie~LD---PaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mt 373 (440)
T KOG0726|consen 300 GGE---REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD---PALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMT 373 (440)
T ss_pred ccH---HHHHHHHHHHHHhccCccccCCeEEEEecccccccC---HhhcCCCccccccccCCCchhhhceeEEEeecccc
Confidence 554 23333222222122111111 111235555666 79999999999999998884 457777766653
Q ss_pred eeecCccccccc
Q psy6098 158 VVDIDKNIDIND 169 (378)
Q Consensus 158 ~~~l~~~i~~~~ 169 (378)
+..+++.+.
T Consensus 374 ---l~~dVnle~ 382 (440)
T KOG0726|consen 374 ---LAEDVNLEE 382 (440)
T ss_pred ---hhccccHHH
Confidence 344444443
No 47
>KOG0652|consensus
Probab=99.84 E-value=2.6e-22 Score=176.66 Aligned_cols=155 Identities=24% Similarity=0.372 Sum_probs=115.8
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
|+-||||||||++|||.|.+.+++|+...++.|+.+|+|++++.+|+.|+.|+..+|+ |+||||+|++...+-.+..
T Consensus 209 LmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~---IIFIDElDAIGtKRfDSek 285 (424)
T KOG0652|consen 209 LMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPT---IIFIDELDAIGTKRFDSEK 285 (424)
T ss_pred EeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCe---EEEEechhhhccccccccc
Confidence 5789999999999999999999999999999999999999999999999999999999 9999999999876543322
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccccccccccccccc---cceeeccCCCce
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQA----QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKK---KVLVKVHPEGKF 157 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~----~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~---~~i~~~~~~~~~ 157 (378)
.+ ++++++.+..+.-++..+.- ......++.+-++ +++.|.||+++.+.-++|.+ ..++++|.+++
T Consensus 286 ~G---DREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLD---PALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKM- 358 (424)
T KOG0652|consen 286 AG---DREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILD---PALLRSGRLDRKIEFPHPNEEARARILQIHSRKM- 358 (424)
T ss_pred cc---cHHHHHHHHHHHHhhcCCCCccceEEEeecccccccC---HHHhhcccccccccCCCCChHHHHHHHHHhhhhc-
Confidence 11 23333333222222211111 0112345666666 78999999999999988874 45778888775
Q ss_pred eeecCccccccccC
Q psy6098 158 VVDIDKNIDINDVT 171 (378)
Q Consensus 158 ~~~l~~~i~~~~l~ 171 (378)
.+.++++.+++.
T Consensus 359 --nv~~DvNfeELa 370 (424)
T KOG0652|consen 359 --NVSDDVNFEELA 370 (424)
T ss_pred --CCCCCCCHHHHh
Confidence 446667666654
No 48
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.84 E-value=6.1e-22 Score=174.28 Aligned_cols=134 Identities=19% Similarity=0.282 Sum_probs=95.3
Q ss_pred CCCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCC
Q psy6098 4 PLHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFK 83 (378)
Q Consensus 4 ~~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~ 83 (378)
=|+-||||||||++|||+|++.+.+|+.|+.++|+++|+|+.+++++++|++|++.+|| |+||||+|++.-.
T Consensus 154 VLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPc---ivFiDE~DAiaLd----- 225 (368)
T COG1223 154 VLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPC---IVFIDELDAIALD----- 225 (368)
T ss_pred eEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCe---EEEehhhhhhhhh-----
Confidence 37889999999999999999999999999999999999999999999999999999999 9999999999754
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccccccccccccccccceee
Q psy6098 84 PYYVTKIEELQLIVAEKEQNLRRLQAQ----RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVK 150 (378)
Q Consensus 84 ~~~~~~~~~l~~~l~~~~~~l~~l~~~----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~~i~~ 150 (378)
++++.....+...++.+...+..+... ....++++..++ .+.+ .||..++.-.+|..++...
T Consensus 226 RryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD---~aiR--sRFEeEIEF~LP~~eEr~~ 291 (368)
T COG1223 226 RRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLD---PAIR--SRFEEEIEFKLPNDEERLE 291 (368)
T ss_pred hhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcC---HHHH--hhhhheeeeeCCChHHHHH
Confidence 344333222222222222222222110 112234555555 2322 4788888777777655433
No 49
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.83 E-value=1.1e-20 Score=189.72 Aligned_cols=144 Identities=46% Similarity=0.816 Sum_probs=129.2
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCccc
Q psy6098 203 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV 282 (378)
Q Consensus 203 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~ 282 (378)
+..+..+|+|++|++++++++.+.+.+ +.+++.+..++...+.+++|+||||||||+++++||+..+.+++.++++++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 345678999999999999999998887 8888999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 283 QKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 283 ~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
+.+.+.+...++++|..+ +...|+||||||||+++++|....++.+....+
T Consensus 126 ~~~~g~~~~~l~~~f~~a-----------------------------~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~ 176 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQA-----------------------------KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQ 176 (495)
T ss_pred HHHhcccHHHHHHHHHHH-----------------------------HhcCCCEEEEechhhhhhccccCcCCccHHHHH
Confidence 999999999999999988 667999999999999999986655555667778
Q ss_pred HHHHHHHhccCCCC
Q psy6098 363 TMLELLNQLDGFEA 376 (378)
Q Consensus 363 ~~~~lL~~l~~~~~ 376 (378)
.++++|.+||++..
T Consensus 177 ~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 177 TLNQLLVEMDGFGT 190 (495)
T ss_pred HHHHHHhhhccccC
Confidence 89999999998743
No 50
>KOG0737|consensus
Probab=99.83 E-value=7.1e-21 Score=175.76 Aligned_cols=137 Identities=39% Similarity=0.723 Sum_probs=119.0
Q ss_pred CCCcccccCcHHHHHHHHHHHhccccCchhhhhcC-CCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccc
Q psy6098 207 DSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALG-IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKF 285 (378)
Q Consensus 207 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~ 285 (378)
.++|+||+|++++++++++.+..|+.+|++|.... ..++.+++|+||||||||.+|+++|...+..||.+.++.+.++|
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 46899999999999999999999999999996444 55778999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHH
Q psy6098 286 IGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML 365 (378)
Q Consensus 286 ~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~ 365 (378)
.|+..+.++.+|..| ..-.|++||+||+|++...| . ++-.......-.
T Consensus 168 fgE~eKlv~AvFslA-----------------------------sKl~P~iIFIDEvds~L~~R-~--s~dHEa~a~mK~ 215 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLA-----------------------------SKLQPSIIFIDEVDSFLGQR-R--STDHEATAMMKN 215 (386)
T ss_pred HHHHHHHHHHHHhhh-----------------------------hhcCcceeehhhHHHHHhhc-c--cchHHHHHHHHH
Confidence 999999999999999 55699999999999999998 3 222334444445
Q ss_pred HHHHhccCCC
Q psy6098 366 ELLNQLDGFE 375 (378)
Q Consensus 366 ~lL~~l~~~~ 375 (378)
+++..-||+.
T Consensus 216 eFM~~WDGl~ 225 (386)
T KOG0737|consen 216 EFMALWDGLS 225 (386)
T ss_pred HHHHHhcccc
Confidence 7777777764
No 51
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.83 E-value=6.5e-21 Score=201.90 Aligned_cols=74 Identities=15% Similarity=0.202 Sum_probs=65.3
Q ss_pred CCCCCCCCCCChhHHHHHHHhhcc----------CceEEEecccccc--ccccchhHHHHHHHHHHHHhc-CCCCCceEE
Q psy6098 2 LKPLHPTWIVSGKTLLARAVAHHT----------ECTFIRVSGSELV--QKFIGEGSRMVRELFVMARCK-GSSRGTEFF 68 (378)
Q Consensus 2 ~~~~~~~pPGtGKt~~a~~~a~~~----------~~~~~~v~~~~~~--~~~~Gese~~~~~~f~~a~~~-~~~~~~ilf 68 (378)
-+|+++||||||||++|+++|..+ +.+++.++.+.++ .+|.|+.|++++.+|+.+++. .++ |||
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~---ILf 271 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQI---ILF 271 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCe---EEE
Confidence 489999999999999999999886 6789999988887 579999999999999999753 344 999
Q ss_pred Eeehhhhhhc
Q psy6098 69 TMDVDEAIKS 78 (378)
Q Consensus 69 ~DEid~~~~~ 78 (378)
|||++.++..
T Consensus 272 IDEih~l~~~ 281 (852)
T TIGR03346 272 IDELHTLVGA 281 (852)
T ss_pred eccHHHhhcC
Confidence 9999999864
No 52
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3.3e-21 Score=193.84 Aligned_cols=138 Identities=27% Similarity=0.317 Sum_probs=104.4
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
||.||||||||++|+++|.+++++|+.|.+++++++|+||||+++|++|..|++.+|| ||||||+|+++..++....
T Consensus 280 Ll~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~---iiFiDEiDs~~~~r~~~~~ 356 (494)
T COG0464 280 LLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPS---IIFIDEIDSLASGRGPSED 356 (494)
T ss_pred EEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCc---EEEEEchhhhhccCCCCCc
Confidence 5889999999999999999999999999999999999999999999999999999999 9999999999988765433
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccccccccccccccc---ceeeccCC
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQ----RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKK---VLVKVHPE 154 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~---~i~~~~~~ 154 (378)
... .+.+.++...+..+... .....++++.++ +++.|+|||+..+..++++.. .+.+.+..
T Consensus 357 ~~~------~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld---~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 357 GSG------RRVVGQLLTELDGIEKAEGVLVIAATNRPDDLD---PALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred hHH------HHHHHHHHHHhcCCCccCceEEEecCCCccccC---HhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 221 11112222122111111 123346666666 688899999999999988854 34444443
No 53
>KOG0732|consensus
Probab=99.81 E-value=1.3e-21 Score=202.05 Aligned_cols=307 Identities=23% Similarity=0.301 Sum_probs=170.1
Q ss_pred CCCCCCCChhHHHHHHHhhcc-----CceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhc-
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT-----ECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKS- 78 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~-----~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~- 78 (378)
|+-||||||||++||++|..+ +..|+.-.++|..++|+||.|+++|.+|++|++..|+ |+||||||-+.+.
T Consensus 303 L~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPS---IIffdeIdGlapvr 379 (1080)
T KOG0732|consen 303 LFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPS---IIFFDEIDGLAPVR 379 (1080)
T ss_pred eecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCce---EEeccccccccccc
Confidence 688999999999999999988 4699999999999999999999999999999999999 9999999965543
Q ss_pred ------------------cCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHH-
Q psy6098 79 ------------------SEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKV------------------RML- 121 (378)
Q Consensus 79 ------------------~~g~~~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~------------------~~l- 121 (378)
++|+.+|+++++-...++++..+..+++...+..++...+ ..+
T Consensus 380 SskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~ 459 (1080)
T KOG0732|consen 380 SSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPIS 459 (1080)
T ss_pred cchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCC
Confidence 6777777666655555555554444444333311111000 000
Q ss_pred HHHHH-HHHhccccccccccccccccceeeccCCCceeeecCc--cccccccCccchhhcccchhhhhhhcCCCCchhhh
Q psy6098 122 REELQ-LLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDK--NIDINDVTPNCRVALRNESYTLHKILPNKVDPLVS 198 (378)
Q Consensus 122 ~eel~-~l~~~g~~~~~i~~~l~~~~~i~~~~~~~~~~~~l~~--~i~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 198 (378)
...+. ....+.+|.|+++..+|...++..+......++.... .++...++ +....+..++.++.|+.......
T Consensus 460 ~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ik----V~~~~f~~A~~~i~ps~~R~~~~ 535 (1080)
T KOG0732|consen 460 RELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIK----VEVRDFVEAMSRITPSSRRSSVI 535 (1080)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhh----hhhHhhhhhhhccCCCCCccccC
Confidence 01111 2233445555555555554444333222211111111 12222222 44455555666665544321100
Q ss_pred hh------ccccCC-CCCcccccC---cHHHHHHHHHHHhccccCchhhhhcCCCC--CcceeEeCCCCCchHHHHHHHh
Q psy6098 199 LM------MVEKVP-DSTYEMVGG---LDNQIKEIKEVIELPVKHPELFDALGIAQ--PKGVLLYGPPGTGKTLLARAVA 266 (378)
Q Consensus 199 ~~------~~~~~~-~~~~~~i~g---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~ll~Gp~G~GKTtl~~~ia 266 (378)
.. ....++ ......+-+ ......++.+...+.+...+. .|.+.. ...+++.|..|.|-+-+.++|-
T Consensus 536 ~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~--~~~i~lic~~~lli~~~~~~g~~~lg~aIl 613 (1080)
T KOG0732|consen 536 FSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFES--NFAIRLICRPRLLINGGKGSGQDYLGPAIL 613 (1080)
T ss_pred CCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhc--ccchhhhcCcHHhcCCCcccccCcccHHHH
Confidence 00 000000 000000001 111112222221111111111 011110 1147889999999999999998
Q ss_pred hhcCce-EEEeccCcccccc-cchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCcc
Q psy6098 267 HHTECT-FIRVSGSELVQKF-IGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDS 344 (378)
Q Consensus 267 ~~~~~~-~i~~~~~~l~~~~-~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~ 344 (378)
..+... ......+.+.... .......+..+|..+ |.+.||||||-.+|.
T Consensus 614 h~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~ea-----------------------------R~~~psi~~ip~~d~ 664 (1080)
T KOG0732|consen 614 HRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEA-----------------------------RKTTPSIVFIPNVDE 664 (1080)
T ss_pred HHHhccchHHHHHHHHHhccccccHHHHHHHHHHHH-----------------------------hccCCceeeccchhh
Confidence 876543 2222333333322 344455677788888 889999999999998
Q ss_pred ccCCC
Q psy6098 345 IGSSR 349 (378)
Q Consensus 345 ~~~~r 349 (378)
+...+
T Consensus 665 w~~~~ 669 (1080)
T KOG0732|consen 665 WARVI 669 (1080)
T ss_pred hhhcC
Confidence 88766
No 54
>KOG0651|consensus
Probab=99.81 E-value=8.3e-21 Score=171.00 Aligned_cols=142 Identities=26% Similarity=0.303 Sum_probs=112.1
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
++-||||||||++||++|..+++.|+.|+.++|+++|+||+++.+|+-|..|+.+.|| |+|+||||++...+ .+
T Consensus 170 ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pc---iifmdeiDAigGRr---~s 243 (388)
T KOG0651|consen 170 LLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPC---IIFMDEIDAIGGRR---FS 243 (388)
T ss_pred EEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCce---EEeehhhhhhccEE---ec
Confidence 4679999999999999999999999999999999999999999999999999999999 99999999998776 22
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhccccccccccccccc---cceeeccCCC
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQRNE----LNAKVRMLREELQLLQEQGSYVGEVVKPMDKK---KVLVKVHPEG 155 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~~~~----l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~---~~i~~~~~~~ 155 (378)
.+...+.+++..+..+..+++.+...... ..++++-++ ++|.|+||+++.+..+++.. -.+.++|...
T Consensus 244 e~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLd---paLlRpGRldrk~~iPlpne~~r~~I~Kih~~~ 318 (388)
T KOG0651|consen 244 EGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLD---PALLRPGRLDRKVEIPLPNEQARLGILKIHVQP 318 (388)
T ss_pred cccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccc---hhhcCCccccceeccCCcchhhceeeEeecccc
Confidence 33334566666666665555555443221 135556665 78999999999998887764 3466666543
No 55
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.81 E-value=1.5e-19 Score=178.81 Aligned_cols=135 Identities=27% Similarity=0.446 Sum_probs=113.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccc
Q psy6098 206 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKF 285 (378)
Q Consensus 206 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~ 285 (378)
++.+|++++|++.+|+.+++.... .......+|+.++++++|+||||||||+++|+||+.++.+++.++.+.+..+|
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 457899999999999999876543 22345678999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHH
Q psy6098 286 IGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML 365 (378)
Q Consensus 286 ~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~ 365 (378)
+|+++..++++|..+ +...||||||||||+++..+.. .+......+.+.
T Consensus 300 vGese~~l~~~f~~A-----------------------------~~~~P~IL~IDEID~~~~~~~~--~~d~~~~~rvl~ 348 (489)
T CHL00195 300 VGESESRMRQMIRIA-----------------------------EALSPCILWIDEIDKAFSNSES--KGDSGTTNRVLA 348 (489)
T ss_pred cChHHHHHHHHHHHH-----------------------------HhcCCcEEEehhhhhhhccccC--CCCchHHHHHHH
Confidence 999999999999988 6779999999999999886532 222234567777
Q ss_pred HHHHhccCC
Q psy6098 366 ELLNQLDGF 374 (378)
Q Consensus 366 ~lL~~l~~~ 374 (378)
.+|..|+..
T Consensus 349 ~lL~~l~~~ 357 (489)
T CHL00195 349 TFITWLSEK 357 (489)
T ss_pred HHHHHHhcC
Confidence 888777653
No 56
>CHL00176 ftsH cell division protein; Validated
Probab=99.80 E-value=1.5e-19 Score=184.06 Aligned_cols=142 Identities=45% Similarity=0.812 Sum_probs=127.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCccccc
Q psy6098 205 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 284 (378)
Q Consensus 205 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~ 284 (378)
-...+|+|++|++++++++.+.+.+ ++.++.+..++...+.+++|+||||||||++++++|+..+.+++.++++++...
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 3457899999999999999998877 788888999999999999999999999999999999999999999999999888
Q ss_pred ccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHH
Q psy6098 285 FIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 364 (378)
Q Consensus 285 ~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~ 364 (378)
+++.+...++++|..+ +...|+||||||||+++.+|+....+.+......+
T Consensus 256 ~~g~~~~~vr~lF~~A-----------------------------~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L 306 (638)
T CHL00176 256 FVGVGAARVRDLFKKA-----------------------------KENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTL 306 (638)
T ss_pred hhhhhHHHHHHHHHHH-----------------------------hcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHH
Confidence 8888888899999988 67899999999999999998765556667778899
Q ss_pred HHHHHhccCCCC
Q psy6098 365 LELLNQLDGFEA 376 (378)
Q Consensus 365 ~~lL~~l~~~~~ 376 (378)
.++|.+||++..
T Consensus 307 ~~LL~~~dg~~~ 318 (638)
T CHL00176 307 NQLLTEMDGFKG 318 (638)
T ss_pred HHHHhhhccccC
Confidence 999999998743
No 57
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5.8e-20 Score=182.01 Aligned_cols=225 Identities=23% Similarity=0.298 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc--------------cceeeccCCCceeeecCcccccc
Q psy6098 103 NLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKK--------------KVLVKVHPEGKFVVDIDKNIDIN 168 (378)
Q Consensus 103 ~l~~l~~~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~--------------~~i~~~~~~~~~~~~l~~~i~~~ 168 (378)
.+....+...++...+..+.++++.++-..++...+...+.+. +++.........+..+...++..
T Consensus 183 ~iLe~~~v~~Rlek~l~~l~~ei~~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~~~e~~~~~~kie~~ 262 (782)
T COG0466 183 EILETLDVKERLEKLLDLLEKEIDLLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDDDDKDEVEELREKIEKL 262 (782)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhHHHHHHHHHhhc
Confidence 3333344445555555555555555444444444444444431 11211111112234556677777
Q ss_pred ccCccchhhcccchhhhhhhcCCCCchhhhhhccccCCCCCcc------------------cccCcHHHHHHHHHHHhcc
Q psy6098 169 DVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYE------------------MVGGLDNQIKEIKEVIELP 230 (378)
Q Consensus 169 ~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~------------------~i~g~~~~~~~l~~~~~~~ 230 (378)
.++...+....++...|..+.|.+.++.+.+.+.+|+-+.+|. |+.|++++|++|-+++...
T Consensus 263 ~~p~evk~k~~~El~kL~~m~~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~ 342 (782)
T COG0466 263 KLPKEAKEKAEKELKKLETMSPMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQ 342 (782)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHH
Confidence 8888888888888999999999999999999999999998883 7999999999999998763
Q ss_pred ccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccc---------cccchhHHHHHHHHHHhh
Q psy6098 231 VKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ---------KFIGEGSRMVRELFVMAS 301 (378)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~---------~~~~~~~~~v~~~~~~a~ 301 (378)
... .--.|.++||+||||+|||+|++.||..++..|++++...+.. -|+|..+..+-+.+..+
T Consensus 343 ~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka- 414 (782)
T COG0466 343 KLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKA- 414 (782)
T ss_pred HHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHh-
Confidence 222 2234579999999999999999999999999999998765532 27888777777777766
Q ss_pred hhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCC-CCCCCCC----CChHHHHHH
Q psy6098 302 LKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSS-RIESGSG----GDSEVQRTM 364 (378)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~-r~~~~~~----~d~~~~~~~ 364 (378)
....| |++|||||++.++ |++|.++ +||+....+
T Consensus 415 ----------------------------~~~NP-v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F 453 (782)
T COG0466 415 ----------------------------GVKNP-VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTF 453 (782)
T ss_pred ----------------------------CCcCC-eEEeechhhccCCCCCChHHHHHhhcCHhhcCch
Confidence 33455 9999999999986 7667665 466544433
No 58
>KOG0741|consensus
Probab=99.80 E-value=8.5e-20 Score=174.46 Aligned_cols=150 Identities=37% Similarity=0.607 Sum_probs=119.1
Q ss_pred CCCCccc--ccCcHHHHHHH-HHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce-EEEeccCcc
Q psy6098 206 PDSTYEM--VGGLDNQIKEI-KEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-FIRVSGSEL 281 (378)
Q Consensus 206 ~~~~~~~--i~g~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-~i~~~~~~l 281 (378)
|+-+|.+ |||++..-..| ++++...+..|+....+|++.-++++||||||||||.+||.|..++... -=.++|+++
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 4444554 78999887776 5677777888899999999999999999999999999999999999865 445699999
Q ss_pred cccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHH
Q psy6098 282 VQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 361 (378)
Q Consensus 282 ~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~ 361 (378)
..+|+|+++.+||.+|..|..+. +.+ ...+.-.||+|||||+||++|++. +|......
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~--------------------r~~-g~~SgLHIIIFDEiDAICKqRGS~-~g~TGVhD 351 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQ--------------------RRL-GANSGLHIIIFDEIDAICKQRGSM-AGSTGVHD 351 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHH--------------------Hhh-CccCCceEEEehhhHHHHHhcCCC-CCCCCccH
Confidence 99999999999999999884322 100 012556799999999999999753 23233445
Q ss_pred HHHHHHHHhccCCCCC
Q psy6098 362 RTMLELLNQLDGFEAT 377 (378)
Q Consensus 362 ~~~~~lL~~l~~~~~~ 377 (378)
.+++|||..|||.++.
T Consensus 352 ~VVNQLLsKmDGVeqL 367 (744)
T KOG0741|consen 352 TVVNQLLSKMDGVEQL 367 (744)
T ss_pred HHHHHHHHhcccHHhh
Confidence 6889999999998653
No 59
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.80 E-value=2.4e-19 Score=187.98 Aligned_cols=138 Identities=53% Similarity=0.917 Sum_probs=121.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCccccc
Q psy6098 205 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 284 (378)
Q Consensus 205 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~ 284 (378)
.++.+|++++|+++++++|++.+.+++.+++.+.++++.++++++|+||||||||+++++||+.++.+++.+++.++..+
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHH
Q psy6098 285 FIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 364 (378)
Q Consensus 285 ~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~ 364 (378)
|.++++..++++|+.+ ....|+||||||||+++++|..+.+..+. +.+
T Consensus 252 ~~g~~~~~l~~lf~~a-----------------------------~~~~p~il~iDEid~l~~~r~~~~~~~~~---~~~ 299 (733)
T TIGR01243 252 YYGESEERLREIFKEA-----------------------------EENAPSIIFIDEIDAIAPKREEVTGEVEK---RVV 299 (733)
T ss_pred cccHHHHHHHHHHHHH-----------------------------HhcCCcEEEeehhhhhcccccCCcchHHH---HHH
Confidence 9999999999999988 55689999999999999998766554444 344
Q ss_pred HHHHHhccCC
Q psy6098 365 LELLNQLDGF 374 (378)
Q Consensus 365 ~~lL~~l~~~ 374 (378)
.+++..|++.
T Consensus 300 ~~Ll~~ld~l 309 (733)
T TIGR01243 300 AQLLTLMDGL 309 (733)
T ss_pred HHHHHHhhcc
Confidence 4555555543
No 60
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.79 E-value=1.3e-19 Score=156.36 Aligned_cols=130 Identities=25% Similarity=0.306 Sum_probs=105.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcc----------------cccccchhHHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL----------------VQKFIGEGSRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l----------------~~~~~~~~~~~v~~~~~~ 299 (378)
-++.+.+|+.++++||+|||||||+|+|.++-.++ .|.++|..+ ++.|--.+..++.+++..
T Consensus 21 i~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~l 100 (240)
T COG1126 21 ISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTL 100 (240)
T ss_pred cceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHh
Confidence 35678899999999999999999999999988776 889988544 222222222233333222
Q ss_pred h------------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 300 A------------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 300 a------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
+ .+.++++..+...++..||+|++||+++||+ ..|.|++||| |||++||+
T Consensus 101 ap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDE----------PTSALDPE 170 (240)
T COG1126 101 APVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE----------PTSALDPE 170 (240)
T ss_pred hhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecC----------CcccCCHH
Confidence 2 3677788999999999999999999999998 8999999999 99999999
Q ss_pred HHHHHHHHHHhccCCCCC
Q psy6098 360 VQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 360 ~~~~~~~lL~~l~~~~~~ 377 (378)
....+++++.+|...|-|
T Consensus 171 lv~EVL~vm~~LA~eGmT 188 (240)
T COG1126 171 LVGEVLDVMKDLAEEGMT 188 (240)
T ss_pred HHHHHHHHHHHHHHcCCe
Confidence 999999999999877754
No 61
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.78 E-value=5.8e-19 Score=164.84 Aligned_cols=108 Identities=20% Similarity=0.205 Sum_probs=88.8
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhh
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLT 319 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~ 319 (378)
.++++|.+++|+||||||||.++++||+.++.++|.+++.++.++|+|++++.++++|..|....-
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~-------------- 208 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIK-------------- 208 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhh--------------
Confidence 578999999999999999999999999999999999999999999999999999999998821000
Q ss_pred hhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 320 ILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 320 ~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
+..+||||||||||+++++|++ +......+....+||..||+
T Consensus 209 ----------~~~aPcVLFIDEIDA~~g~r~~--~~~tv~~qiV~~tLLnl~D~ 250 (413)
T PLN00020 209 ----------KKGKMSCLFINDLDAGAGRFGT--TQYTVNNQMVNGTLMNIADN 250 (413)
T ss_pred ----------ccCCCeEEEEehhhhcCCCCCC--CCcchHHHHHHHHHHHHhcC
Confidence 1358999999999999999852 22222333334688887775
No 62
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=3.9e-19 Score=157.53 Aligned_cols=125 Identities=20% Similarity=0.158 Sum_probs=101.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcc----------cccccchhHHHHHHHHHH------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL----------VQKFIGEGSRMVRELFVM------ 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l----------~~~~~~~~~~~v~~~~~~------ 299 (378)
-++.+.+|+.++|+||+|||||||+|+|||+..+. .|.++|..+ +|++.-.++.++.++...
T Consensus 22 i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~ 101 (248)
T COG1116 22 INLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRG 101 (248)
T ss_pred ceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccc
Confidence 46788999999999999999999999999999987 788888654 344444444444443332
Q ss_pred -----------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHH
Q psy6098 300 -----------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLE 366 (378)
Q Consensus 300 -----------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~ 366 (378)
..+..+++.......+..+|+||+||+++||+ ..|.||++|| |++++|..++..+.+
T Consensus 102 ~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE----------PFgALDalTR~~lq~ 171 (248)
T COG1116 102 KSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDE----------PFGALDALTREELQD 171 (248)
T ss_pred cchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcC----------CcchhhHHHHHHHHH
Confidence 23555677888999999999999999999999 9999999999 999999999888887
Q ss_pred HHHhcc
Q psy6098 367 LLNQLD 372 (378)
Q Consensus 367 lL~~l~ 372 (378)
.|.++-
T Consensus 172 ~l~~lw 177 (248)
T COG1116 172 ELLRLW 177 (248)
T ss_pred HHHHHH
Confidence 776653
No 63
>KOG0740|consensus
Probab=99.77 E-value=8.5e-19 Score=167.44 Aligned_cols=146 Identities=38% Similarity=0.671 Sum_probs=128.8
Q ss_pred hhhhhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEE
Q psy6098 196 LVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 275 (378)
Q Consensus 196 ~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~ 275 (378)
.......+..+++.|+|+.|++.+++.+.+++.+|...+..|..+. .+..+++|.||||+|||+|+++||.+.+..|..
T Consensus 138 ~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~ 216 (428)
T KOG0740|consen 138 GIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFN 216 (428)
T ss_pred HHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEee
Confidence 3444556777889999999999999999999999999999887654 455689999999999999999999999999999
Q ss_pred eccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCC
Q psy6098 276 VSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSG 355 (378)
Q Consensus 276 ~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~ 355 (378)
++.++|..+|+|++++.++.+|..| +...|+|+|+||||+++.+|+ ..
T Consensus 217 iSassLtsK~~Ge~eK~vralf~vA-----------------------------r~~qPsvifidEidslls~Rs---~~ 264 (428)
T KOG0740|consen 217 ISASSLTSKYVGESEKLVRALFKVA-----------------------------RSLQPSVIFIDEIDSLLSKRS---DN 264 (428)
T ss_pred ccHHHhhhhccChHHHHHHHHHHHH-----------------------------HhcCCeEEEechhHHHHhhcC---Cc
Confidence 9999999999999999999999999 788999999999999999993 33
Q ss_pred CChHHHHHHHHHHHhccCC
Q psy6098 356 GDSEVQRTMLELLNQLDGF 374 (378)
Q Consensus 356 ~d~~~~~~~~~lL~~l~~~ 374 (378)
.++...+...++|.+.++.
T Consensus 265 e~e~srr~ktefLiq~~~~ 283 (428)
T KOG0740|consen 265 EHESSRRLKTEFLLQFDGK 283 (428)
T ss_pred ccccchhhhhHHHhhhccc
Confidence 4556677888888888765
No 64
>KOG0737|consensus
Probab=99.76 E-value=6.3e-20 Score=169.54 Aligned_cols=72 Identities=33% Similarity=0.442 Sum_probs=70.4
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhcc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSS 79 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~ 79 (378)
|+-||||||||++|+|+|++.|+.|+.|+.+.+.+||.||+++.++.+|..|.+.+|| ||||||+|+++..+
T Consensus 131 LL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~---iIFIDEvds~L~~R 202 (386)
T KOG0737|consen 131 LLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPS---IIFIDEVDSFLGQR 202 (386)
T ss_pred eecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhcCcc---eeehhhHHHHHhhc
Confidence 6889999999999999999999999999999999999999999999999999999999 99999999999876
No 65
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.75 E-value=1.4e-18 Score=156.73 Aligned_cols=126 Identities=23% Similarity=0.248 Sum_probs=99.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccchh----------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGEG---------------- 289 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~~---------------- 289 (378)
-+|.+++|+.++|.||||||||||+|+|+|.+++. .|.+++.++.+. |+.+.
T Consensus 21 ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~G 100 (258)
T COG1120 21 LSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLG 100 (258)
T ss_pred ceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhc
Confidence 46789999999999999999999999999999976 899999766221 11100
Q ss_pred -----------HHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCC
Q psy6098 290 -----------SRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGG 356 (378)
Q Consensus 290 -----------~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~ 356 (378)
.+.-.+ .....++.+.........+..+|+|++|++.+|++ +.|.||+||| |++.+
T Consensus 101 R~p~~~~~~~~~~~D~~-~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDE----------PTs~L 169 (258)
T COG1120 101 RYPHLGLFGRPSKEDEE-IVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDE----------PTSHL 169 (258)
T ss_pred CCcccccccCCCHhHHH-HHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCC----------Ccccc
Confidence 011111 11223555666777778899999999999999998 8999999999 99999
Q ss_pred ChHHHHHHHHHHHhccCC
Q psy6098 357 DSEVQRTMLELLNQLDGF 374 (378)
Q Consensus 357 d~~~~~~~~~lL~~l~~~ 374 (378)
|...+..++++++++...
T Consensus 170 Di~~Q~evl~ll~~l~~~ 187 (258)
T COG1120 170 DIAHQIEVLELLRDLNRE 187 (258)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999998733
No 66
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.75 E-value=1.6e-18 Score=146.43 Aligned_cols=131 Identities=24% Similarity=0.308 Sum_probs=107.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccc------------------ccccchhHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELV------------------QKFIGEGSRMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~------------------~~~~~~~~~~v~~~~ 297 (378)
-+|.+.+|+.+-+.||+|+|||||+|.|.+...++ .|.+++.++. +.|---...++.++.
T Consensus 21 vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNV 100 (223)
T COG2884 21 VSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENV 100 (223)
T ss_pred ceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhh
Confidence 46789999999999999999999999999999887 8888887762 222111222333322
Q ss_pred HH-----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 298 VM-----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 298 ~~-----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
.. +.++.+++.++....+..||+|++|++++||+ +.|.||+-|| ||..+||
T Consensus 101 A~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADE----------PTGNLDp 170 (223)
T COG2884 101 ALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADE----------PTGNLDP 170 (223)
T ss_pred hhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecC----------CCCCCCh
Confidence 22 23666778899999999999999999999999 9999999999 9999999
Q ss_pred HHHHHHHHHHHhccCCCCCC
Q psy6098 359 EVQRTMLELLNQLDGFEATK 378 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~~~~~ 378 (378)
.....+++++.++...|.|.
T Consensus 171 ~~s~~im~lfeeinr~GtTV 190 (223)
T COG2884 171 DLSWEIMRLFEEINRLGTTV 190 (223)
T ss_pred HHHHHHHHHHHHHhhcCcEE
Confidence 99999999999999998873
No 67
>KOG0732|consensus
Probab=99.75 E-value=2.4e-18 Score=178.12 Aligned_cols=139 Identities=40% Similarity=0.715 Sum_probs=122.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce-----EEEeccCc
Q psy6098 206 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-----FIRVSGSE 280 (378)
Q Consensus 206 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-----~i~~~~~~ 280 (378)
..++|+++||+++++..+++.+..|+.+|+.|.+|++.|+++++|+||||||||+.++++|..+... |..-+|++
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 4578999999999999999999999999999999999999999999999999999999999887643 66668899
Q ss_pred ccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 281 LVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 281 l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
..++|+|+.++..+..|+.| +.+.|+|||+||||-|++.|+.+ .+...
T Consensus 340 ~lskwvgEaERqlrllFeeA-----------------------------~k~qPSIIffdeIdGlapvrSsk---qEqih 387 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEA-----------------------------QKTQPSIIFFDEIDGLAPVRSSK---QEQIH 387 (1080)
T ss_pred hhccccCcHHHHHHHHHHHH-----------------------------hccCceEEeccccccccccccch---HHHhh
Confidence 99999999999999999999 88999999999999999998543 44444
Q ss_pred HHHHHHHHHhccCCCC
Q psy6098 361 QRTMLELLNQLDGFEA 376 (378)
Q Consensus 361 ~~~~~~lL~~l~~~~~ 376 (378)
..++..+|.-|||..+
T Consensus 388 ~SIvSTLLaLmdGlds 403 (1080)
T KOG0732|consen 388 ASIVSTLLALMDGLDS 403 (1080)
T ss_pred hhHHHHHHHhccCCCC
Confidence 5566677777777654
No 68
>KOG0740|consensus
Probab=99.75 E-value=3.5e-19 Score=170.05 Aligned_cols=131 Identities=24% Similarity=0.287 Sum_probs=92.8
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCC-C
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGF-K 83 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~-~ 83 (378)
||.||||||||+|++|+|.|++++|+.|++++|.++|+||+|+.||.+|..||+..|+ |+||||+|.++..+..- .
T Consensus 190 LLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPs---vifidEidslls~Rs~~e~ 266 (428)
T KOG0740|consen 190 LLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPS---VIFIDEIDSLLSKRSDNEH 266 (428)
T ss_pred heecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCe---EEEechhHHHHhhcCCccc
Confidence 5889999999999999999999999999999999999999999999999999999999 99999999999776331 1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Q psy6098 84 PYYVTKIEELQLIVAEKEQNLRRLQ--AQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKK 146 (378)
Q Consensus 84 ~~~~~~~~~l~~~l~~~~~~l~~l~--~~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~ 146 (378)
......-.+...+.... ..... -.....+++++.++ +++++ +|.+.++.++|+..
T Consensus 267 e~srr~ktefLiq~~~~---~s~~~drvlvigaTN~P~e~D---ea~~R--rf~kr~yiplPd~e 323 (428)
T KOG0740|consen 267 ESSRRLKTEFLLQFDGK---NSAPDDRVLVIGATNRPWELD---EAARR--RFVKRLYIPLPDYE 323 (428)
T ss_pred ccchhhhhHHHhhhccc---cCCCCCeEEEEecCCCchHHH---HHHHH--HhhceeeecCCCHH
Confidence 11111111111111000 00000 00112245666666 45555 78888888888743
No 69
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.7e-18 Score=155.44 Aligned_cols=130 Identities=21% Similarity=0.291 Sum_probs=102.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------cccchhH-------HHHHHHHHH--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------KFIGEGS-------RMVRELFVM-- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~~~~~~~-------~~v~~~~~~-- 299 (378)
-++.+.+|+.++|+||||+|||||+|+|.|++++. .|.+.+..... .|+.+.. .+|.++..+
T Consensus 23 i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~ 102 (254)
T COG1121 23 ISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGR 102 (254)
T ss_pred cEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccC
Confidence 46788999999999999999999999999999976 77776653211 1222211 122222222
Q ss_pred -------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 300 -------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 300 -------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
..++++++.......+..||+|+.||+.+||+ +.|.+|+||| |++|.|+
T Consensus 103 ~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDE----------P~~gvD~ 172 (254)
T COG1121 103 YGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDE----------PFTGVDV 172 (254)
T ss_pred cccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecC----------CcccCCH
Confidence 23566677788888999999999999999999 9999999999 9999999
Q ss_pred HHHHHHHHHHHhccCCCCC
Q psy6098 359 EVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~~~~ 377 (378)
.++..+.++|.++...|.|
T Consensus 173 ~~~~~i~~lL~~l~~eg~t 191 (254)
T COG1121 173 AGQKEIYDLLKELRQEGKT 191 (254)
T ss_pred HHHHHHHHHHHHHHHCCCE
Confidence 9999999999999987665
No 70
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.73 E-value=6.6e-19 Score=174.22 Aligned_cols=131 Identities=17% Similarity=0.192 Sum_probs=93.9
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
|+.||||||||++||++|++++.+|+.++.+.+.++|+|++|++++++|+.|++.+|| ||||||||.++..+.+...
T Consensus 263 LL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~---IL~IDEID~~~~~~~~~~d 339 (489)
T CHL00195 263 LLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPC---ILWIDEIDKAFSNSESKGD 339 (489)
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCc---EEEehhhhhhhccccCCCC
Confidence 5789999999999999999999999999999999999999999999999999999999 9999999999875332211
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQA--QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKK 146 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~--~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~ 146 (378)
.. . ....+..+...+..... ..-.-.+.++.++ +++.|+|||+..+...+|+..
T Consensus 340 ~~-~----~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld---~allR~GRFD~~i~v~lP~~~ 395 (489)
T CHL00195 340 SG-T----TNRVLATFITWLSEKKSPVFVVATANNIDLLP---LEILRKGRFDEIFFLDLPSLE 395 (489)
T ss_pred ch-H----HHHHHHHHHHHHhcCCCceEEEEecCChhhCC---HHHhCCCcCCeEEEeCCcCHH
Confidence 11 0 01111111111110000 0000124445555 677889999999988888743
No 71
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.73 E-value=3.2e-19 Score=191.97 Aligned_cols=129 Identities=11% Similarity=0.047 Sum_probs=90.9
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccc----------cc-------------------------------
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKF----------IG------------------------------- 43 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~----------~G------------------------------- 43 (378)
||+||||||||+||||+|++++++|+.|++++++++| +|
T Consensus 1634 LLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~~~~m~ 1713 (2281)
T CHL00206 1634 LVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMDMM 1713 (2281)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchhhhhhh
Confidence 6899999999999999999999999999999999765 23
Q ss_pred hhHH--HHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6098 44 EGSR--MVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRML 121 (378)
Q Consensus 44 ese~--~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l 121 (378)
+++. +||.+|+.|++.+|| ||||||||+++.... +. .....+...++........-.....+.+++++.+
T Consensus 1714 ~~e~~~rIr~lFelARk~SPC---IIFIDEIDaL~~~ds----~~-ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~L 1785 (2281)
T CHL00206 1714 PKIDRFYITLQFELAKAMSPC---IIWIPNIHDLNVNES----NY-LSLGLLVNSLSRDCERCSTRNILVIASTHIPQKV 1785 (2281)
T ss_pred hhhhHHHHHHHHHHHHHCCCe---EEEEEchhhcCCCcc----ce-ehHHHHHHHhccccccCCCCCEEEEEeCCCcccC
Confidence 3333 499999999999999 999999999987521 11 1122222222211000000000122345677777
Q ss_pred HHHHHHHHhcccccccccccccc
Q psy6098 122 REELQLLQEQGSYVGEVVKPMDK 144 (378)
Q Consensus 122 ~eel~~l~~~g~~~~~i~~~l~~ 144 (378)
+ +++.|||||++.+...++.
T Consensus 1786 D---PALLRPGRFDR~I~Ir~Pd 1805 (2281)
T CHL00206 1786 D---PALIAPNKLNTCIKIRRLL 1805 (2281)
T ss_pred C---HhHcCCCCCCeEEEeCCCC
Confidence 7 8999999999999876443
No 72
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.72 E-value=1.1e-17 Score=156.63 Aligned_cols=128 Identities=25% Similarity=0.276 Sum_probs=99.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc---------ccch-----hHHHHHHHHHHh-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK---------FIGE-----GSRMVRELFVMA- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~---------~~~~-----~~~~v~~~~~~a- 300 (378)
-+|.+.+|+.++|.||||+|||||+|+|+|...+. .|.++|.+.... |+.+ ..-++++.+...
T Consensus 24 vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~ 103 (293)
T COG1131 24 VSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFA 103 (293)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHH
Confidence 46788999999999999999999999999999987 888888655321 2221 111333433332
Q ss_pred ----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 301 ----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 301 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
.++.+.+.......+..+|.|++|++.++.+ +.|+++|||| |++|+||..+.
T Consensus 104 ~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE----------Pt~GLDp~~~~ 173 (293)
T COG1131 104 RLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDE----------PTSGLDPESRR 173 (293)
T ss_pred HHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC----------CCcCCCHHHHH
Confidence 1233334444467789999999999999998 9999999999 99999999999
Q ss_pred HHHHHHHhccCCC
Q psy6098 363 TMLELLNQLDGFE 375 (378)
Q Consensus 363 ~~~~lL~~l~~~~ 375 (378)
.++++|+.+...+
T Consensus 174 ~~~~~l~~l~~~g 186 (293)
T COG1131 174 EIWELLRELAKEG 186 (293)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998776
No 73
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.71 E-value=1.4e-17 Score=145.91 Aligned_cols=126 Identities=25% Similarity=0.263 Sum_probs=99.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccccc----------c--------hhHHHHHHH-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFI----------G--------EGSRMVREL- 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~----------~--------~~~~~v~~~- 296 (378)
-++.+.+|+.+++.||+|+|||||+|+|.|++.++ .|.+.|.++.+... | .+.-+|.++
T Consensus 27 v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNV 106 (263)
T COG1127 27 VDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENV 106 (263)
T ss_pred ceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhh
Confidence 35678999999999999999999999999999998 89999987733210 0 001111111
Q ss_pred -----------------HHHhhhhhhhhccC-chhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCC
Q psy6098 297 -----------------FVMASLKKLAFAHH-PLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGG 356 (378)
Q Consensus 297 -----------------~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~ 356 (378)
+....++.+++... ....++.||+||.+|+++||+ .+|.+||+|| |++|+
T Consensus 107 afplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DE----------PtsGL 176 (263)
T COG1127 107 AFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDE----------PTSGL 176 (263)
T ss_pred heehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecC----------CCCCC
Confidence 11223555566666 888999999999999999998 8999999999 99999
Q ss_pred ChHHHHHHHHHHHhccC
Q psy6098 357 DSEVQRTMLELLNQLDG 373 (378)
Q Consensus 357 d~~~~~~~~~lL~~l~~ 373 (378)
||.+...+.+++..+..
T Consensus 177 DPI~a~~~~~LI~~L~~ 193 (263)
T COG1127 177 DPISAGVIDELIRELND 193 (263)
T ss_pred CcchHHHHHHHHHHHHH
Confidence 99999999999998864
No 74
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.71 E-value=1.3e-17 Score=147.60 Aligned_cols=127 Identities=27% Similarity=0.264 Sum_probs=98.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------------------cccchhHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------------------KFIGEGSRMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------------------~~~~~~~~~v~~~ 296 (378)
.++.+.+|+.+++.||+|||||||++.|+++..++ .+.+++.++.. .|--...-++.+.
T Consensus 24 v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~EN 103 (226)
T COG1136 24 VNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLEN 103 (226)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHH
Confidence 46789999999999999999999999999999987 78888865522 1111111233333
Q ss_pred HHHh-----------------hhhhhhhccCch-hhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCC
Q psy6098 297 FVMA-----------------SLKKLAFAHHPL-LFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGG 356 (378)
Q Consensus 297 ~~~a-----------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~ 356 (378)
+... .++.+.+.+... ..+..||+|++||+++||+ +.|.+||.|| ||.++
T Consensus 104 v~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADE----------PTgnL 173 (226)
T COG1136 104 VELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADE----------PTGNL 173 (226)
T ss_pred HHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeC----------ccccC
Confidence 3311 133334554444 6788999999999999999 9999999999 99999
Q ss_pred ChHHHHHHHHHHHhccCC
Q psy6098 357 DSEVQRTMLELLNQLDGF 374 (378)
Q Consensus 357 d~~~~~~~~~lL~~l~~~ 374 (378)
|......++++|.++...
T Consensus 174 D~~t~~~V~~ll~~~~~~ 191 (226)
T COG1136 174 DSKTAKEVLELLRELNKE 191 (226)
T ss_pred ChHHHHHHHHHHHHHHHh
Confidence 999999999999998644
No 75
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.71 E-value=2.8e-17 Score=140.20 Aligned_cols=129 Identities=24% Similarity=0.219 Sum_probs=103.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccccc----------ch---hH-HHHHHHHHHh-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFI----------GE---GS-RMVRELFVMA- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~----------~~---~~-~~v~~~~~~a- 300 (378)
-+|.+..|+.++|.||||+||||++|+||+++.|+ .+.+++-+...... ++ .. -++++.+..-
T Consensus 21 VSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa 100 (245)
T COG4555 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFA 100 (245)
T ss_pred eeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHH
Confidence 47888999999999999999999999999999987 88888877743310 11 11 1233332211
Q ss_pred ----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 301 ----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 301 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
..+.+.+....+.++..+|.|++|++.+||+ ++|++++||| |++|+|....+
T Consensus 101 ~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDE----------P~sGLDi~~~r 170 (245)
T COG4555 101 RLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDE----------PTSGLDIRTRR 170 (245)
T ss_pred HHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcC----------CCCCccHHHHH
Confidence 1344556778888999999999999999999 9999999999 99999999999
Q ss_pred HHHHHHHhccCCCC
Q psy6098 363 TMLELLNQLDGFEA 376 (378)
Q Consensus 363 ~~~~lL~~l~~~~~ 376 (378)
.+.+++.+++..+.
T Consensus 171 ~~~dfi~q~k~egr 184 (245)
T COG4555 171 KFHDFIKQLKNEGR 184 (245)
T ss_pred HHHHHHHHhhcCCc
Confidence 99999999987554
No 76
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.71 E-value=1.5e-18 Score=168.12 Aligned_cols=141 Identities=32% Similarity=0.407 Sum_probs=99.7
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
++.||||||||++|+++|++++.+|+.+.++++.++|+|++++.++++|+.|+..+|| |+||||+|+++..+.+...
T Consensus 183 LL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~---ILfIDEID~i~~~r~~~~~ 259 (398)
T PTZ00454 183 LLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPS---IIFIDEVDSIATKRFDAQT 259 (398)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCe---EEEEECHhhhccccccccC
Confidence 5789999999999999999999999999999999999999999999999999999999 9999999999876532211
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccccccccccccccccc---eeeccCC
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQ----RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKV---LVKVHPE 154 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~~---i~~~~~~ 154 (378)
.. .......+..+...+..+... .-...+.++.++ +++.++++|+..+..++|+... +.+.+..
T Consensus 260 ~~---d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LD---pAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 260 GA---DREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD---PALLRPGRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred Cc---cHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCC---HHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 11 112222222222121111000 001134445555 6778899999999888877543 4554433
No 77
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.70 E-value=5.1e-17 Score=167.22 Aligned_cols=139 Identities=44% Similarity=0.796 Sum_probs=122.9
Q ss_pred CCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccccc
Q psy6098 208 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIG 287 (378)
Q Consensus 208 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~~ 287 (378)
.+|+++.|.+..++++.+.+.+ +..+..+..++...+.+++|+||||||||++++++++.++.+++.++++++...+.+
T Consensus 149 ~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g 227 (644)
T PRK10733 149 TTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG 227 (644)
T ss_pred CcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhc
Confidence 4688999999999999999887 566777777788888899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHH
Q psy6098 288 EGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL 367 (378)
Q Consensus 288 ~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~l 367 (378)
.+...+++.|..+ +...|+||||||||+++.+|+....+.+....+.++++
T Consensus 228 ~~~~~~~~~f~~a-----------------------------~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~l 278 (644)
T PRK10733 228 VGASRVRDMFEQA-----------------------------KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQM 278 (644)
T ss_pred ccHHHHHHHHHHH-----------------------------HhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHH
Confidence 9999999999888 66789999999999999999765555666777889999
Q ss_pred HHhccCCCC
Q psy6098 368 LNQLDGFEA 376 (378)
Q Consensus 368 L~~l~~~~~ 376 (378)
|.+||++..
T Consensus 279 L~~mdg~~~ 287 (644)
T PRK10733 279 LVEMDGFEG 287 (644)
T ss_pred HHhhhcccC
Confidence 999998754
No 78
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.70 E-value=3.7e-18 Score=166.55 Aligned_cols=140 Identities=29% Similarity=0.376 Sum_probs=99.2
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
++.||||||||++||++|++++.+|+.|++++++++|+|++++.++++|..|+..+|| |+||||+|+++..+....+
T Consensus 221 LL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~---ILfIDEID~l~~kR~~~~s 297 (438)
T PTZ00361 221 ILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPS---IVFIDEIDAIGTKRYDATS 297 (438)
T ss_pred EEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCc---EEeHHHHHHHhccCCCCCC
Confidence 5789999999999999999999999999999999999999999999999999999999 9999999999976543222
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccccccccccccccc---ceeeccC
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQ----RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKK---VLVKVHP 153 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~---~i~~~~~ 153 (378)
... ..+...+..+...+..+... .....+.++.++ +++.++++|+..+....++.. .+++.+.
T Consensus 298 gg~---~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LD---paLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 298 GGE---KEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLD---PALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred ccc---HHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhh---HHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 211 11111111111111111100 001134455555 577889999999988887643 4555443
No 79
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.70 E-value=4.4e-17 Score=142.83 Aligned_cols=129 Identities=22% Similarity=0.210 Sum_probs=105.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc------ccch---------------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK------FIGE--------------------- 288 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~------~~~~--------------------- 288 (378)
-+|.+++|+.++|.||||+||||+.|+|.|++.++ .|.++|.++... |..+
T Consensus 21 isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~Lk 100 (300)
T COG4152 21 ISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELK 100 (300)
T ss_pred eeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhc
Confidence 47789999999999999999999999999999986 999999877432 2211
Q ss_pred --hHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHH
Q psy6098 289 --GSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 364 (378)
Q Consensus 289 --~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~ 364 (378)
..+.++.-+.. -++++....+....+..||.|+.|++..+.+ |.|.+|+||| |+||+||...+.+
T Consensus 101 Gm~~~e~~~~~~~-wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDE----------PFSGLDPVN~elL 169 (300)
T COG4152 101 GMPKAEIQKKLQA-WLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDE----------PFSGLDPVNVELL 169 (300)
T ss_pred CCcHHHHHHHHHH-HHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecC----------CccCCChhhHHHH
Confidence 11111111111 1566667889999999999999999998888 9999999999 9999999999999
Q ss_pred HHHHHhccCCCCC
Q psy6098 365 LELLNQLDGFEAT 377 (378)
Q Consensus 365 ~~lL~~l~~~~~~ 377 (378)
-+.+.++...|+|
T Consensus 170 k~~I~~lk~~Gat 182 (300)
T COG4152 170 KDAIFELKEEGAT 182 (300)
T ss_pred HHHHHHHHhcCCE
Confidence 9999999988876
No 80
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.69 E-value=4e-18 Score=165.75 Aligned_cols=140 Identities=34% Similarity=0.465 Sum_probs=97.9
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
++.||||||||++||++|++++.+|+.++++++.++|+|++++.++.+|+.|+..+|| ||||||+|+++..+.+...
T Consensus 169 LL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~---IlfiDEiD~l~~~r~~~~~ 245 (389)
T PRK03992 169 LLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPS---IIFIDEIDAIAAKRTDSGT 245 (389)
T ss_pred EEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCe---EEEEechhhhhcccccCCC
Confidence 5789999999999999999999999999999999999999999999999999999998 9999999999876543221
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccccccccccccccc---ceeeccC
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQ----RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKK---VLVKVHP 153 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~---~i~~~~~ 153 (378)
... ..+...+..+...+..+... .....+.++.++ +++.++++|+..+..+.++.. .+++.+.
T Consensus 246 ~~~---~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld---~allRpgRfd~~I~v~~P~~~~R~~Il~~~~ 315 (389)
T PRK03992 246 SGD---REVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILD---PAILRPGRFDRIIEVPLPDEEGRLEILKIHT 315 (389)
T ss_pred Ccc---HHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCC---HHHcCCccCceEEEECCCCHHHHHHHHHHHh
Confidence 111 11222222221111111000 001123344444 677889999998887777643 3444443
No 81
>KOG2004|consensus
Probab=99.68 E-value=6.5e-17 Score=159.82 Aligned_cols=150 Identities=22% Similarity=0.356 Sum_probs=118.6
Q ss_pred cCccccccccCccchhhcccchhhhhhhcCCCCchhhhhhccccCCCCCc------------------ccccCcHHHHHH
Q psy6098 161 IDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTY------------------EMVGGLDNQIKE 222 (378)
Q Consensus 161 l~~~i~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~------------------~~i~g~~~~~~~ 222 (378)
+..+++...++........++...|..+-+++....+++.+.+|+...+| +|+.||+++|++
T Consensus 343 ~~er~~~~~~P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeR 422 (906)
T KOG2004|consen 343 FRERIKSLKMPDHVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKER 422 (906)
T ss_pred HHHHhhhccCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHH
Confidence 34455555666666666667777888888888889999999999988888 479999999999
Q ss_pred HHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCccc---------ccccchhHHHH
Q psy6098 223 IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV---------QKFIGEGSRMV 293 (378)
Q Consensus 223 l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~---------~~~~~~~~~~v 293 (378)
|.+++...... +-..|+++||+||||+|||+++|.||..+++.|++++-..+. .-|+|..+..+
T Consensus 423 ILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGki 495 (906)
T KOG2004|consen 423 ILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKI 495 (906)
T ss_pred HHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHH
Confidence 99998763222 445689999999999999999999999999999998766552 23788877777
Q ss_pred HHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccC
Q psy6098 294 RELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGS 347 (378)
Q Consensus 294 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~ 347 (378)
-+.+... ....| +++|||||++++
T Consensus 496 Iq~LK~v-----------------------------~t~NP-liLiDEvDKlG~ 519 (906)
T KOG2004|consen 496 IQCLKKV-----------------------------KTENP-LILIDEVDKLGS 519 (906)
T ss_pred HHHHHhh-----------------------------CCCCc-eEEeehhhhhCC
Confidence 7776655 33455 999999999994
No 82
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.68 E-value=6.6e-17 Score=152.51 Aligned_cols=130 Identities=21% Similarity=0.205 Sum_probs=97.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc---------ccchh-----HHHHHHHHHH--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK---------FIGEG-----SRMVRELFVM-- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~---------~~~~~-----~~~v~~~~~~-- 299 (378)
-+|.+.+|+.++|+||||+|||||+++|+|.+.++ .|.++|.++... |+.+. ..++.+.+..
T Consensus 26 vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~ 105 (306)
T PRK13537 26 LSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFG 105 (306)
T ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHH
Confidence 46788999999999999999999999999999876 788887654210 11110 1123333221
Q ss_pred ---------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 300 ---------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 300 ---------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
..++.+.+.......+..+|.|++|+++++++ +.|.+||||| |++|+|+..++
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDE----------Pt~gLD~~~~~ 175 (306)
T PRK13537 106 RYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE----------PTTGLDPQARH 175 (306)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeC----------CCcCCCHHHHH
Confidence 01223334455566778999999999999998 9999999999 99999999999
Q ss_pred HHHHHHHhccCCCCC
Q psy6098 363 TMLELLNQLDGFEAT 377 (378)
Q Consensus 363 ~~~~lL~~l~~~~~~ 377 (378)
.++++|.++...+.|
T Consensus 176 ~l~~~l~~l~~~g~t 190 (306)
T PRK13537 176 LMWERLRSLLARGKT 190 (306)
T ss_pred HHHHHHHHHHhCCCE
Confidence 999999998655543
No 83
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.68 E-value=7.8e-17 Score=151.95 Aligned_cols=130 Identities=20% Similarity=0.237 Sum_probs=97.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc---------cccch-----hHHHHHHHHHH--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ---------KFIGE-----GSRMVRELFVM-- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~---------~~~~~-----~~~~v~~~~~~-- 299 (378)
-+|.+.+|+.++|.||||+|||||+|+|+|.+.++ .|.+++.++.. .|+.+ ...++.+.+..
T Consensus 12 vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 91 (302)
T TIGR01188 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMG 91 (302)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHH
Confidence 46789999999999999999999999999999876 78887754421 01111 01123332221
Q ss_pred ---------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 300 ---------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 300 ---------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
..+..+.+.......+..+|+|++|+++++++ +.|.+||||| |++++|+..++
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE----------Pt~gLD~~~~~ 161 (302)
T TIGR01188 92 RLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDE----------PTTGLDPRTRR 161 (302)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCcCCCHHHHH
Confidence 11333444555667788999999999999998 9999999999 99999999999
Q ss_pred HHHHHHHhccCCCCC
Q psy6098 363 TMLELLNQLDGFEAT 377 (378)
Q Consensus 363 ~~~~lL~~l~~~~~~ 377 (378)
.++++|.++...+.|
T Consensus 162 ~l~~~l~~~~~~g~t 176 (302)
T TIGR01188 162 AIWDYIRALKEEGVT 176 (302)
T ss_pred HHHHHHHHHHhCCCE
Confidence 999999998654443
No 84
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.67 E-value=4.6e-17 Score=153.24 Aligned_cols=125 Identities=24% Similarity=0.254 Sum_probs=97.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcc-------------cccccchhHHHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL-------------VQKFIGEGSRMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l-------------~~~~~~~~~~~v~~~~~~--- 299 (378)
-++.+.+|+.++|.|||||||||++|+|||+..++ .|.++|.++ ++.|.-.+..+|.++...
T Consensus 24 isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk 103 (352)
T COG3842 24 ISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLK 103 (352)
T ss_pred ceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhh
Confidence 46788999999999999999999999999999987 899998876 233322222233333211
Q ss_pred ---------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 300 ---------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 300 ---------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
..++.+.+.......+..+|+|++||+++||+ ..|.||+||| |.+++|...+.
T Consensus 104 ~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE----------PlSaLD~kLR~ 173 (352)
T COG3842 104 VRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE----------PLSALDAKLRE 173 (352)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC----------cccchhHHHHH
Confidence 12445567788889999999999999999999 8999999999 99999998877
Q ss_pred HHHHHHHhcc
Q psy6098 363 TMLELLNQLD 372 (378)
Q Consensus 363 ~~~~lL~~l~ 372 (378)
.+..-|+++.
T Consensus 174 ~mr~Elk~lq 183 (352)
T COG3842 174 QMRKELKELQ 183 (352)
T ss_pred HHHHHHHHHH
Confidence 7766555554
No 85
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.67 E-value=9.1e-17 Score=140.11 Aligned_cols=124 Identities=27% Similarity=0.262 Sum_probs=95.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFW 315 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~ 315 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++...........+.-+++ .+..+.+.......+
T Consensus 18 ~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q--~l~~~gl~~~~~~~~ 95 (180)
T cd03214 18 LSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ--ALELLGLAHLADRPF 95 (180)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH--HHHHcCCHhHhcCCc
Confidence 36788999999999999999999999999998776 78888876533211111112222232 233344444445667
Q ss_pred hHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 316 SLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 316 ~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
..+|.|++|+++++++ ..|+++++|| |++++|+.....+.++|.++..
T Consensus 96 ~~LS~G~~qrl~laral~~~p~llllDE----------P~~~LD~~~~~~~~~~l~~~~~ 145 (180)
T cd03214 96 NELSGGERQRVLLARALAQEPPILLLDE----------PTSHLDIAHQIELLELLRRLAR 145 (180)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHHH
Confidence 8899999999999998 8999999999 9999999999999999998854
No 86
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.4e-16 Score=140.25 Aligned_cols=127 Identities=24% Similarity=0.236 Sum_probs=96.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------------ccc--hhHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------------FIG--EGSRMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------------~~~--~~~~~v~~~~ 297 (378)
-+|.+.+|+.++|+|++|||||||+|+|+|+..+. .|.++|..+..+ ..+ .+..++.+++
T Consensus 26 VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l 105 (252)
T COG1124 26 VSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL 105 (252)
T ss_pred eeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHH
Confidence 46789999999999999999999999999999987 899988655331 000 1112233322
Q ss_pred HHh---------------hhhhhhh-ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 298 VMA---------------SLKKLAF-AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 298 ~~a---------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
..+ .++.+++ .......+..+|+|++||++++|+ ..|.+|++|| |++++|..
T Consensus 106 ~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDE----------ptSaLD~s 175 (252)
T COG1124 106 SEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDE----------PTSALDVS 175 (252)
T ss_pred hhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecC----------chhhhcHH
Confidence 221 1223333 344555677899999999999999 8999999999 99999999
Q ss_pred HHHHHHHHHHhccCC
Q psy6098 360 VQRTMLELLNQLDGF 374 (378)
Q Consensus 360 ~~~~~~~lL~~l~~~ 374 (378)
.+..++++|.++...
T Consensus 176 iQa~IlnlL~~l~~~ 190 (252)
T COG1124 176 VQAQILNLLLELKKE 190 (252)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988754
No 87
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.67 E-value=4.4e-17 Score=152.62 Aligned_cols=126 Identities=25% Similarity=0.237 Sum_probs=100.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcc-------------cccccchhHHHHHHHHHHh--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL-------------VQKFIGEGSRMVRELFVMA-- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l-------------~~~~~~~~~~~v~~~~~~a-- 300 (378)
-++.+..|+.+.|.|||||||||++|+|||+..++ .|.+++.++ ++.|.-.+.-+|++++...
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk 101 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLK 101 (338)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhh
Confidence 46678899999999999999999999999999987 899988766 2333333333344433322
Q ss_pred ---------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 301 ---------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 301 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
..+.+.+.+.....+..||+|++||++++|+ ..|+|++||| |.+.+|...+..
T Consensus 102 ~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE----------PlSnLDa~lR~~ 171 (338)
T COG3839 102 LRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE----------PLSNLDAKLRVL 171 (338)
T ss_pred hCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC----------chhHhhHHHHHH
Confidence 1344567788888899999999999999999 9999999999 999999998888
Q ss_pred HHHHHHhccC
Q psy6098 364 MLELLNQLDG 373 (378)
Q Consensus 364 ~~~lL~~l~~ 373 (378)
+...|.++..
T Consensus 172 mr~ei~~lh~ 181 (338)
T COG3839 172 MRSEIKKLHE 181 (338)
T ss_pred HHHHHHHHHH
Confidence 8888777664
No 88
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.67 E-value=9.3e-18 Score=168.54 Aligned_cols=138 Identities=25% Similarity=0.333 Sum_probs=99.1
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCC-CC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEG-FK 83 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g-~~ 83 (378)
++.||||||||++||++|.+++++|+.++++++.+.|+|+++++++++|+.|+..+|| ||||||+|+++..++. ..
T Consensus 92 LL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~---Il~iDEid~l~~~r~~~~~ 168 (495)
T TIGR01241 92 LLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPC---IIFIDEIDAVGRQRGAGLG 168 (495)
T ss_pred EEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCC---EEEEechhhhhhccccCcC
Confidence 5789999999999999999999999999999999999999999999999999999999 9999999999976543 21
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccccccccccccccc---cceeecc
Q psy6098 84 PYYVTKIEELQLIVAEKEQNLRRLQAQ----RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKK---KVLVKVH 152 (378)
Q Consensus 84 ~~~~~~~~~l~~~l~~~~~~l~~l~~~----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~---~~i~~~~ 152 (378)
... ......+..+...+..+... .....+.++.++ +++.+++||+..+...+|+. ..+++.+
T Consensus 169 ~~~----~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld---~al~r~gRfd~~i~i~~Pd~~~R~~il~~~ 237 (495)
T TIGR01241 169 GGN----DEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLD---PALLRPGRFDRQVVVDLPDIKGREEILKVH 237 (495)
T ss_pred Ccc----HHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcC---HHHhcCCcceEEEEcCCCCHHHHHHHHHHH
Confidence 111 11111122222222111110 001134455555 67889999999998888774 3444443
No 89
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.67 E-value=1.7e-17 Score=164.07 Aligned_cols=131 Identities=21% Similarity=0.264 Sum_probs=93.4
Q ss_pred CCCCCCCChhHHHHHHHhhccCc----------eEEEeccccccccccchhHHHHHHHHHHHHhc----CCCCCceEEEe
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTEC----------TFIRVSGSELVQKFIGEGSRMVRELFVMARCK----GSSRGTEFFTM 70 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~----------~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~----~~~~~~ilf~D 70 (378)
|+.||||||||++||++|++++. .|+.+++++++++|+|+++++++.+|+.|+.. .|| |+|||
T Consensus 220 LLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~---IIfID 296 (512)
T TIGR03689 220 LLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPV---IVFFD 296 (512)
T ss_pred EEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCc---eEEEe
Confidence 68899999999999999999853 48889999999999999999999999999875 466 99999
Q ss_pred ehhhhhhccCC-CCchhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccccccccccccccc
Q psy6098 71 DVDEAIKSSEG-FKPYYVTKIEELQLIVAEKEQNLRRLQAQ----RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKK 145 (378)
Q Consensus 71 Eid~~~~~~~g-~~~~~~~~~~~l~~~l~~~~~~l~~l~~~----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~ 145 (378)
|+|+++..++. ..+... ..+ +.++...+..+... .....+..+.++ +++.||+||+..+....|+.
T Consensus 297 EiD~L~~~R~~~~s~d~e---~~i---l~~LL~~LDgl~~~~~ViVI~ATN~~d~LD---pALlRpGRfD~~I~~~~Pd~ 367 (512)
T TIGR03689 297 EMDSIFRTRGSGVSSDVE---TTV---VPQLLSELDGVESLDNVIVIGASNREDMID---PAILRPGRLDVKIRIERPDA 367 (512)
T ss_pred hhhhhhcccCCCccchHH---HHH---HHHHHHHhcccccCCceEEEeccCChhhCC---HhhcCccccceEEEeCCCCH
Confidence 99999977542 222111 111 11221111111110 111235555665 68899999999998888775
Q ss_pred cc
Q psy6098 146 KV 147 (378)
Q Consensus 146 ~~ 147 (378)
..
T Consensus 368 e~ 369 (512)
T TIGR03689 368 EA 369 (512)
T ss_pred HH
Confidence 43
No 90
>KOG1051|consensus
Probab=99.67 E-value=1.4e-15 Score=156.95 Aligned_cols=75 Identities=21% Similarity=0.205 Sum_probs=62.4
Q ss_pred CCCCCCCCCCChhHHHHHHHhhcc----------CceEEEecccccc--ccccchhHHHHHHHHHHHHhcCCCCCceEEE
Q psy6098 2 LKPLHPTWIVSGKTLLARAVAHHT----------ECTFIRVSGSELV--QKFIGEGSRMVRELFVMARCKGSSRGTEFFT 69 (378)
Q Consensus 2 ~~~~~~~pPGtGKt~~a~~~a~~~----------~~~~~~v~~~~~~--~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~ 69 (378)
-||++||.||.|||.++.-+|+.. +..++.++...++ .++.|+.|.+++++-.++.. ...|.|||+
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~--~~~gvILfi 286 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVES--GGGGVILFL 286 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhc--CCCcEEEEe
Confidence 489999999999999999999765 3477777776566 56999999999999999985 344689999
Q ss_pred eehhhhhhc
Q psy6098 70 MDVDEAIKS 78 (378)
Q Consensus 70 DEid~~~~~ 78 (378)
||+.-+...
T Consensus 287 gelh~lvg~ 295 (898)
T KOG1051|consen 287 GELHWLVGS 295 (898)
T ss_pred cceeeeecC
Confidence 998877644
No 91
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=1e-16 Score=145.40 Aligned_cols=126 Identities=26% Similarity=0.289 Sum_probs=101.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccc------------------ccccchhHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELV------------------QKFIGEGSRMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~------------------~~~~~~~~~~v~~~~ 297 (378)
-++.++.|++++++|.+|+|||||+|+|.++-.|+ .|.++|.++. ++|--.+.++|.++.
T Consensus 25 vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~Nv 104 (339)
T COG1135 25 VSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENV 104 (339)
T ss_pred ceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhh
Confidence 46789999999999999999999999999998887 8999986652 222222333333333
Q ss_pred HHh-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 298 VMA-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 298 ~~a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
.+. .++.+++.++...++..||+|++||+.+||+ ..|.||+.|| +||++||
T Consensus 105 A~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DE----------aTSALDP 174 (339)
T COG1135 105 AFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDE----------ATSALDP 174 (339)
T ss_pred hhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecC----------ccccCCh
Confidence 221 1444567788889999999999999999999 9999999999 9999999
Q ss_pred HHHHHHHHHHHhccC
Q psy6098 359 EVQRTMLELLNQLDG 373 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~ 373 (378)
.....++++|+++..
T Consensus 175 ~TT~sIL~LL~~In~ 189 (339)
T COG1135 175 ETTQSILELLKDINR 189 (339)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998864
No 92
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.66 E-value=1.5e-16 Score=151.89 Aligned_cols=130 Identities=22% Similarity=0.210 Sum_probs=97.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc------c---ccch-----hHHHHHHHHHH--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ------K---FIGE-----GSRMVRELFVM-- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~------~---~~~~-----~~~~v~~~~~~-- 299 (378)
-+|.+.+|+.++|+||||+|||||+++|+|.+.++ .|.++|.++.. . |+.+ ...++.+.+..
T Consensus 60 is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~ 139 (340)
T PRK13536 60 LSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFG 139 (340)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHH
Confidence 46789999999999999999999999999999876 78887765421 0 1110 01122222221
Q ss_pred ---------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 300 ---------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 300 ---------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
..+..+.+.......+..+|.|++|+++++++ +.|.|||||| |++|+|+..++
T Consensus 140 ~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDE----------Pt~gLD~~~r~ 209 (340)
T PRK13536 140 RYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDE----------PTTGLDPHARH 209 (340)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC----------CCCCCCHHHHH
Confidence 01233344555667788999999999999998 8999999999 99999999999
Q ss_pred HHHHHHHhccCCCCC
Q psy6098 363 TMLELLNQLDGFEAT 377 (378)
Q Consensus 363 ~~~~lL~~l~~~~~~ 377 (378)
.++++|.++...+.|
T Consensus 210 ~l~~~l~~l~~~g~t 224 (340)
T PRK13536 210 LIWERLRSLLARGKT 224 (340)
T ss_pred HHHHHHHHHHhCCCE
Confidence 999999998655543
No 93
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.66 E-value=2e-16 Score=142.06 Aligned_cols=129 Identities=21% Similarity=0.314 Sum_probs=95.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------c---ccchh-----HHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------K---FIGEG-----SRMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~---~~~~~-----~~~v~~~~ 297 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+
T Consensus 22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 101 (216)
T TIGR00960 22 LNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNV 101 (216)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHH
Confidence 46788999999999999999999999999998765 77777754421 0 11111 01223322
Q ss_pred HHh-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 298 VMA-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 298 ~~a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
... .++.+.+.......+..+|+|++|+++++++ ..|+||+||| |++++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE----------Pt~~LD~ 171 (216)
T TIGR00960 102 AFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADE----------PTGNLDP 171 (216)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCCcCCH
Confidence 211 1233344455566778999999999999998 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccCCCC
Q psy6098 359 EVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~~~ 376 (378)
..+..+.++|.++...+.
T Consensus 172 ~~~~~l~~~l~~~~~~~~ 189 (216)
T TIGR00960 172 ELSRDIMRLFEEFNRRGT 189 (216)
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 999999999998854443
No 94
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=3e-16 Score=135.17 Aligned_cols=125 Identities=22% Similarity=0.251 Sum_probs=91.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccccc---------cch-------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQKF---------IGE------------- 288 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~~~---------~~~------------- 288 (378)
-++.++++..++|+||+||||||++|++..+... ..|.++|.++.... +|+
T Consensus 26 i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIy 105 (253)
T COG1117 26 INLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIY 105 (253)
T ss_pred CceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHH
Confidence 3567888999999999999999999999887553 26777777774321 111
Q ss_pred ------------hHHH----HHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 289 ------------GSRM----VRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 289 ------------~~~~----v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
..+. |...+..|.++. ...+........||+|++||+|+||+ ..|.||++||
T Consensus 106 dNVayG~r~~g~~~~~ldeiVe~sLk~AaLWd-EVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDE--------- 175 (253)
T COG1117 106 DNVAYGLRLHGIKDKELDEIVESSLKKAALWD-EVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDE--------- 175 (253)
T ss_pred HHHHHhHHhhccchHHHHHHHHHHHHHhHhHH-HhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecC---------
Confidence 0011 222222222221 12344445566799999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|+|++||.+...+-+++.+|..
T Consensus 176 -PtSALDPIsT~kIEeLi~eLk~ 197 (253)
T COG1117 176 -PTSALDPISTLKIEELITELKK 197 (253)
T ss_pred -cccccCchhHHHHHHHHHHHHh
Confidence 9999999999999999999874
No 95
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.65 E-value=2.1e-16 Score=140.70 Aligned_cols=129 Identities=21% Similarity=0.203 Sum_probs=96.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------cccchh------HHHHHHHHHHh--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------KFIGEG------SRMVRELFVMA-- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~~~~~~------~~~v~~~~~~a-- 300 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+. ..++.+.+...
T Consensus 19 v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~ 98 (205)
T cd03226 19 LSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLK 98 (205)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhh
Confidence 36788999999999999999999999999998765 77777755311 011111 11333333221
Q ss_pred -----------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHH
Q psy6098 301 -----------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL 367 (378)
Q Consensus 301 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~l 367 (378)
.++.+.+.......+..+|+|++|++.++++ .+|.+++||| |++++|+..+..+.++
T Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE----------Pt~~LD~~~~~~l~~~ 168 (205)
T cd03226 99 ELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE----------PTSGLDYKNMERVGEL 168 (205)
T ss_pred hcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC----------CCccCCHHHHHHHHHH
Confidence 1233344555566778999999999999998 8999999999 9999999999999999
Q ss_pred HHhccCCCC
Q psy6098 368 LNQLDGFEA 376 (378)
Q Consensus 368 L~~l~~~~~ 376 (378)
|.++...+.
T Consensus 169 l~~~~~~~~ 177 (205)
T cd03226 169 IRELAAQGK 177 (205)
T ss_pred HHHHHHCCC
Confidence 998854343
No 96
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.65 E-value=1.8e-16 Score=139.97 Aligned_cols=125 Identities=22% Similarity=0.240 Sum_probs=96.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccch-----hHHHHHHHHHHh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGE-----GSRMVRELFVMA 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~-----~~~~v~~~~~~a 300 (378)
-++.+..|+.++|+||+||||||++|+|.++..++ .|.+++.++.+. |+-+ +..++.+++...
T Consensus 20 v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~V 99 (309)
T COG1125 20 VNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATV 99 (309)
T ss_pred eeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhh
Confidence 36788999999999999999999999999999987 899999877432 2111 111222222111
Q ss_pred -----------------hhhhhhhc--cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 301 -----------------SLKKLAFA--HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 301 -----------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
.+..+.+. .+....+..||+|++||+.++|+ ..|.||++|| |++++||.
T Consensus 100 P~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDE----------PFgALDpI 169 (309)
T COG1125 100 PKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDE----------PFGALDPI 169 (309)
T ss_pred hhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecC----------CccccChh
Confidence 13333443 46777889999999999999998 8999999999 99999999
Q ss_pred HHHHHHHHHHhcc
Q psy6098 360 VQRTMLELLNQLD 372 (378)
Q Consensus 360 ~~~~~~~lL~~l~ 372 (378)
.+..+-+.+.+|.
T Consensus 170 ~R~~lQ~e~~~lq 182 (309)
T COG1125 170 TRKQLQEEIKELQ 182 (309)
T ss_pred hHHHHHHHHHHHH
Confidence 9988888877776
No 97
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.65 E-value=2e-16 Score=142.27 Aligned_cols=126 Identities=25% Similarity=0.341 Sum_probs=93.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----------c---ccchh-----HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----------K---FIGEG-----SRMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----------~---~~~~~-----~~~v~~~ 296 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.
T Consensus 23 ~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 102 (218)
T cd03255 23 VSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALEN 102 (218)
T ss_pred eEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHH
Confidence 46788999999999999999999999999998765 77777654321 1 11110 0122222
Q ss_pred HHH-----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 297 FVM-----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 297 ~~~-----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+.. ..+..+.+.......+..+|+|++|++.++++ ..|+||+||| |++++|
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDE----------P~~~LD 172 (218)
T cd03255 103 VELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADE----------PTGNLD 172 (218)
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcC----------CcccCC
Confidence 211 11223334444566778999999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccC
Q psy6098 358 SEVQRTMLELLNQLDG 373 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~ 373 (378)
+..+..+.++|.++..
T Consensus 173 ~~~~~~l~~~l~~~~~ 188 (218)
T cd03255 173 SETGKEVMELLRELNK 188 (218)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998854
No 98
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=2.1e-16 Score=143.06 Aligned_cols=126 Identities=22% Similarity=0.266 Sum_probs=98.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccC---cc-------------cccccchhHHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGS---EL-------------VQKFIGEGSRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~---~l-------------~~~~~~~~~~~v~~~~~~ 299 (378)
-++.|..|+.++|+||||+||||++|+|||+..++ .|.+++. +. ++.|.-....+|.+++..
T Consensus 21 i~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAF 100 (345)
T COG1118 21 ISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAF 100 (345)
T ss_pred ceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhh
Confidence 46678899999999999999999999999999987 8888887 33 222222222233333222
Q ss_pred hh-------------------hhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 300 AS-------------------LKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 300 a~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
+. +..+.+......++..||+|++||++.||+ ..|.||+||| |++++|.
T Consensus 101 Gl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDE----------Pf~ALDa 170 (345)
T COG1118 101 GLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE----------PFGALDA 170 (345)
T ss_pred cccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecC----------CchhhhH
Confidence 21 344456777788899999999999999998 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccC
Q psy6098 359 EVQRTMLELLNQLDG 373 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~ 373 (378)
..+..+-.+|+++..
T Consensus 171 ~vr~~lr~wLr~~~~ 185 (345)
T COG1118 171 KVRKELRRWLRKLHD 185 (345)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988887753
No 99
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.64 E-value=3.6e-16 Score=137.53 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=94.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccc---------c---cccchhH------HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELV---------Q---KFIGEGS------RMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~---------~---~~~~~~~------~~v~~~~ 297 (378)
-++.+.+|+.++|.||||+|||||+++|+|...+. .|.+++.++. . .|+.+.. .++.+.+
T Consensus 11 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl 90 (190)
T TIGR01166 11 LNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDV 90 (190)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHH
Confidence 46789999999999999999999999999998765 6777664431 0 0111111 1233322
Q ss_pred HHh-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 298 VMA-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 298 ~~a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
... .++.+.+.......+..+|.|++|+++++++ ..|.+|+||| |++++|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE----------Pt~~LD~ 160 (190)
T TIGR01166 91 AFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE----------PTAGLDP 160 (190)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------CcccCCH
Confidence 211 1222334444566778999999999999998 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccCCCC
Q psy6098 359 EVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~~~ 376 (378)
..+..+.++|.++...+.
T Consensus 161 ~~~~~~~~~l~~~~~~~~ 178 (190)
T TIGR01166 161 AGREQMLAILRRLRAEGM 178 (190)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999998864443
No 100
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=4.3e-16 Score=139.24 Aligned_cols=128 Identities=20% Similarity=0.188 Sum_probs=93.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc---c---ccch-----hHHHHHHHHHHh----
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ---K---FIGE-----GSRMVRELFVMA---- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~---~---~~~~-----~~~~v~~~~~~a---- 300 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+ ...++.+.+...
T Consensus 19 v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 98 (210)
T cd03269 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLK 98 (210)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHc
Confidence 46788999999999999999999999999998765 77777754311 0 1110 011222222111
Q ss_pred -------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHH
Q psy6098 301 -------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML 365 (378)
Q Consensus 301 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~ 365 (378)
.++.+.+.......+..+|.|++|++.++++ ..|.++++|| |++++|+..+..+.
T Consensus 99 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDE----------P~~~LD~~~~~~~~ 168 (210)
T cd03269 99 GLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDE----------PFSGLDPVNVELLK 168 (210)
T ss_pred CCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCcCCCHHHHHHHH
Confidence 1223334444556778999999999999998 8999999999 99999999999999
Q ss_pred HHHHhccCCC
Q psy6098 366 ELLNQLDGFE 375 (378)
Q Consensus 366 ~lL~~l~~~~ 375 (378)
++|.++...+
T Consensus 169 ~~l~~~~~~~ 178 (210)
T cd03269 169 DVIRELARAG 178 (210)
T ss_pred HHHHHHHHCC
Confidence 9999875434
No 101
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=3.7e-16 Score=136.72 Aligned_cols=126 Identities=24% Similarity=0.302 Sum_probs=100.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccc----------cch--------hH-------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKF----------IGE--------GS------- 290 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~----------~~~--------~~------- 290 (378)
-++.+++|+.++|+||+|+|||||+|+|++...+. .|.+++.++.... +|. ..
T Consensus 23 Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NV 102 (258)
T COG3638 23 VNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENV 102 (258)
T ss_pred EeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHH
Confidence 46789999999999999999999999999988876 7888886552110 000 00
Q ss_pred --------HHHHH----------HHHHhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 291 --------RMVRE----------LFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 291 --------~~v~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
..++. ......+.++++..+.+.+.+.||+|++||+++||+ ..|.||+-||
T Consensus 103 l~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADE--------- 173 (258)
T COG3638 103 LLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADE--------- 173 (258)
T ss_pred HhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCC---------
Confidence 01111 111224777788899999999999999999999999 9999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|.+++||...+.++++|+.+..
T Consensus 174 -PvasLDp~~a~~Vm~~l~~in~ 195 (258)
T COG3638 174 -PVASLDPESAKKVMDILKDINQ 195 (258)
T ss_pred -cccccChhhHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 102
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=5e-16 Score=139.85 Aligned_cols=126 Identities=25% Similarity=0.251 Sum_probs=98.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------ccc---------------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------KFI--------------------- 286 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~~~--------------------- 286 (378)
.++.+.+|+.++|+||||+|||||+++++|++.+. .|.+++.++.. +.+
T Consensus 23 v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~eva 102 (235)
T COG1122 23 VSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVA 102 (235)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHh
Confidence 46789999999999999999999999999999987 77777765321 111
Q ss_pred ------chhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 287 ------GEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 287 ------~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
+.....+.+.... .+..+.+.......+..||+|++||+++|.. ..|.+|+||| ||+++|+
T Consensus 103 fg~~n~g~~~~e~~~rv~~-~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDE----------Pta~LD~ 171 (235)
T COG1122 103 FGLENLGLPREEIEERVAE-ALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDE----------PTAGLDP 171 (235)
T ss_pred hchhhcCCCHHHHHHHHHH-HHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcC----------CCCCCCH
Confidence 1111112221111 2444456666778888999999999999987 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccCC
Q psy6098 359 EVQRTMLELLNQLDGF 374 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~ 374 (378)
..++.+++++.++...
T Consensus 172 ~~~~~l~~~l~~L~~~ 187 (235)
T COG1122 172 KGRRELLELLKKLKEE 187 (235)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999765
No 103
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.64 E-value=3.3e-16 Score=149.40 Aligned_cols=126 Identities=25% Similarity=0.281 Sum_probs=97.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccc---h-----hHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIG---E-----GSRMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~---~-----~~~~v~~~~ 297 (378)
-+|.+.+|+.++|.||||||||||+|+|+|+..++ .|.+++.++... .++ + ...++.+.+
T Consensus 24 vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni 103 (343)
T TIGR02314 24 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNV 103 (343)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHH
Confidence 36788999999999999999999999999999876 788887655210 011 0 112233322
Q ss_pred HHh-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 298 VMA-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 298 ~~a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
... .++.+.+.......+..||+|++||+.++|+ ..|+||++|| |++++|+
T Consensus 104 ~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDE----------Pts~LD~ 173 (343)
T TIGR02314 104 ALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDE----------ATSALDP 173 (343)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC----------CcccCCH
Confidence 211 1333445566677889999999999999999 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccC
Q psy6098 359 EVQRTMLELLNQLDG 373 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~ 373 (378)
..+..++++|+++..
T Consensus 174 ~t~~~i~~lL~~l~~ 188 (343)
T TIGR02314 174 ATTQSILELLKEINR 188 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998854
No 104
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=3.2e-16 Score=140.41 Aligned_cols=126 Identities=22% Similarity=0.244 Sum_probs=93.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----c---ccchhH-----HHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----K---FIGEGS-----RMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----~---~~~~~~-----~~v~~~~~~--- 299 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+.. .++.+.+..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 98 (213)
T cd03259 19 LSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLK 98 (213)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHH
Confidence 36788999999999999999999999999998765 77777654321 0 111110 122222211
Q ss_pred --------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 300 --------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 300 --------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
..+..+.+.......+..+|+|++|++.++++ ..|.||+||| |++++|+..+..
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE----------Pt~~LD~~~~~~ 168 (213)
T cd03259 99 LRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE----------PLSALDAKLREE 168 (213)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------CcccCCHHHHHH
Confidence 11233334444556678999999999999998 8999999999 999999999999
Q ss_pred HHHHHHhccC
Q psy6098 364 MLELLNQLDG 373 (378)
Q Consensus 364 ~~~lL~~l~~ 373 (378)
+.++|.++..
T Consensus 169 l~~~l~~~~~ 178 (213)
T cd03259 169 LREELKELQR 178 (213)
T ss_pred HHHHHHHHHH
Confidence 9999998743
No 105
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.63 E-value=3.3e-16 Score=136.93 Aligned_cols=127 Identities=18% Similarity=0.266 Sum_probs=100.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc-----------ccchhH-----HHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK-----------FIGEGS-----RMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~-----------~~~~~~-----~~v~~~~~~ 299 (378)
-++.+..|++++|+||||+||||++|+|+|...+. .|.++|.++... |+.+.. -+|.+++..
T Consensus 22 vsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~ 101 (237)
T COG0410 22 VSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLL 101 (237)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhh
Confidence 46788999999999999999999999999999974 999999988543 333322 256776665
Q ss_pred hhhhhh-----------------hhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 300 ASLKKL-----------------AFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 300 a~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
+....- .+..........+|+|++|+++++|+ ..|.+++||| |+.|+.|..
T Consensus 102 g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDE----------Ps~GLaP~i 171 (237)
T COG0410 102 GAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDE----------PSEGLAPKI 171 (237)
T ss_pred hhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecC----------CccCcCHHH
Confidence 421110 02333444555799999999999999 9999999999 999999999
Q ss_pred HHHHHHHHHhccCC
Q psy6098 361 QRTMLELLNQLDGF 374 (378)
Q Consensus 361 ~~~~~~lL~~l~~~ 374 (378)
...+.+.++++...
T Consensus 172 v~~I~~~i~~l~~~ 185 (237)
T COG0410 172 VEEIFEAIKELRKE 185 (237)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999854
No 106
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.63 E-value=4.6e-16 Score=139.48 Aligned_cols=129 Identities=22% Similarity=0.346 Sum_probs=94.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------c---ccchhH-----HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------K---FIGEGS-----RMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~---~~~~~~-----~~v~~~~ 297 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+.. .++.+.+
T Consensus 21 is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 100 (214)
T TIGR02673 21 VSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENV 100 (214)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHH
Confidence 36789999999999999999999999999998765 77777654321 0 111110 1222222
Q ss_pred HHh-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 298 VMA-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 298 ~~a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
... .++.+.+.......+..+|+|++|+++++++ ..|+|++||| |++++|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDE----------Pt~~LD~ 170 (214)
T TIGR02673 101 ALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADE----------PTGNLDP 170 (214)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC----------CcccCCH
Confidence 211 1222333444455678999999999999998 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccCCCC
Q psy6098 359 EVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~~~ 376 (378)
..+..+.++|.++...+.
T Consensus 171 ~~~~~l~~~l~~~~~~~~ 188 (214)
T TIGR02673 171 DLSERILDLLKRLNKRGT 188 (214)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999998754443
No 107
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=3.1e-16 Score=150.63 Aligned_cols=126 Identities=23% Similarity=0.199 Sum_probs=96.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc--------ccch-----hHHHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK--------FIGE-----GSRMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~--------~~~~-----~~~~v~~~~~~--- 299 (378)
-++.+.+|+.++|.||||||||||+|+|||+..++ .|.+++.++... |+.+ ...++.+++..
T Consensus 23 vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~ 102 (356)
T PRK11650 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLK 102 (356)
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHh
Confidence 46788999999999999999999999999998876 888888655210 1111 11122222221
Q ss_pred --------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 300 --------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 300 --------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
..++.+.+.......+..||+|++||++++|+ ..|+||+||| |++++|+..+..
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDE----------P~s~LD~~~r~~ 172 (356)
T PRK11650 103 IRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDE----------PLSNLDAKLRVQ 172 (356)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CcccCCHHHHHH
Confidence 11333445566677888999999999999999 8999999999 999999999999
Q ss_pred HHHHHHhccC
Q psy6098 364 MLELLNQLDG 373 (378)
Q Consensus 364 ~~~lL~~l~~ 373 (378)
+.+.|.++..
T Consensus 173 l~~~l~~l~~ 182 (356)
T PRK11650 173 MRLEIQRLHR 182 (356)
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 108
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=3.2e-16 Score=141.16 Aligned_cols=125 Identities=21% Similarity=0.201 Sum_probs=92.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--c---ccchh-----HHHHHHHHHH------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--K---FIGEG-----SRMVRELFVM------ 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--~---~~~~~-----~~~v~~~~~~------ 299 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 23 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 102 (220)
T cd03293 23 ISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQG 102 (220)
T ss_pred eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcC
Confidence 36788899999999999999999999999998765 77777654311 0 11110 0122222211
Q ss_pred -----------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHH
Q psy6098 300 -----------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLE 366 (378)
Q Consensus 300 -----------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~ 366 (378)
..++.+.+.......+..+|+|++|++.++++ ..|++++||| |++++|+..+..+.+
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE----------Pt~~LD~~~~~~~~~ 172 (220)
T cd03293 103 VPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDE----------PFSALDALTREQLQE 172 (220)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECC----------CCCCCCHHHHHHHHH
Confidence 11233334444556678899999999999998 8999999999 999999999999999
Q ss_pred HHHhcc
Q psy6098 367 LLNQLD 372 (378)
Q Consensus 367 lL~~l~ 372 (378)
+|.++.
T Consensus 173 ~l~~~~ 178 (220)
T cd03293 173 ELLDIW 178 (220)
T ss_pred HHHHHH
Confidence 998873
No 109
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.63 E-value=4.7e-16 Score=146.74 Aligned_cols=129 Identities=22% Similarity=0.224 Sum_probs=94.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc------c---ccchh-----HHHHHHHHHH--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ------K---FIGEG-----SRMVRELFVM-- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~------~---~~~~~-----~~~v~~~~~~-- 299 (378)
-+|.+.+|+.++|+||||+|||||+++|+|.+.++ .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 23 vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 102 (303)
T TIGR01288 23 LSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFG 102 (303)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHH
Confidence 46788999999999999999999999999998765 77777654311 0 11110 1122222211
Q ss_pred ---------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 300 ---------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 300 ---------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
..+..+.+.......+..+|+|++|++.++++ ..|.+||||| |++++|+..+.
T Consensus 103 ~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE----------Pt~gLD~~~~~ 172 (303)
T TIGR01288 103 RYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDE----------PTTGLDPHARH 172 (303)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCcCCCHHHHH
Confidence 01223334445566778999999999999998 8999999999 99999999999
Q ss_pred HHHHHHHhccCCCC
Q psy6098 363 TMLELLNQLDGFEA 376 (378)
Q Consensus 363 ~~~~lL~~l~~~~~ 376 (378)
.++++|.++...+.
T Consensus 173 ~l~~~l~~~~~~g~ 186 (303)
T TIGR01288 173 LIWERLRSLLARGK 186 (303)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999998865444
No 110
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.63 E-value=5.1e-16 Score=138.34 Aligned_cols=129 Identities=20% Similarity=0.227 Sum_probs=94.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccc---c--------c---ccchh-----HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELV---Q--------K---FIGEG-----SRMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~---~--------~---~~~~~-----~~~v~~~ 296 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++. . . |+.+. ..++.+.
T Consensus 17 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 96 (206)
T TIGR03608 17 LNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEEN 96 (206)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHH
Confidence 46788899999999999999999999999998765 6777765521 0 0 11110 0122222
Q ss_pred HHH-----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 297 FVM-----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 297 ~~~-----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+.. ..++.+.+.......+..+|.|++|+++++++ ..|++++||| |++++|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDE----------Pt~~LD 166 (206)
T TIGR03608 97 LDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADE----------PTGSLD 166 (206)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC----------CcCCCC
Confidence 211 11333334445566778999999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccCCCC
Q psy6098 358 SEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~~~~ 376 (378)
+..+..+.++|+++...+.
T Consensus 167 ~~~~~~l~~~l~~~~~~~~ 185 (206)
T TIGR03608 167 PKNRDEVLDLLLELNDEGK 185 (206)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999998754343
No 111
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.63 E-value=6.6e-16 Score=137.84 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=94.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----c---ccchh-----HHHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----K---FIGEG-----SRMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----~---~~~~~-----~~~v~~~~~~--- 299 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 19 ~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 98 (208)
T cd03268 19 ISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLAR 98 (208)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHH
Confidence 46788899999999999999999999999998765 77787765421 0 11110 1122222211
Q ss_pred ----------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHH
Q psy6098 300 ----------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL 367 (378)
Q Consensus 300 ----------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~l 367 (378)
..++.+.+.......+..+|+|++|+++++++ ..|+++++|| |++++|+..+..+.++
T Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE----------Pt~~LD~~~~~~l~~~ 168 (208)
T cd03268 99 LLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDE----------PTNGLDPDGIKELREL 168 (208)
T ss_pred hcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC----------CcccCCHHHHHHHHHH
Confidence 11233334444566788999999999999998 8999999999 9999999999999999
Q ss_pred HHhccCCCC
Q psy6098 368 LNQLDGFEA 376 (378)
Q Consensus 368 L~~l~~~~~ 376 (378)
|.++...+.
T Consensus 169 l~~~~~~~~ 177 (208)
T cd03268 169 ILSLRDQGI 177 (208)
T ss_pred HHHHHHCCC
Confidence 998764443
No 112
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.63 E-value=4.2e-16 Score=139.44 Aligned_cols=129 Identities=25% Similarity=0.258 Sum_probs=94.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------cccchh------HHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------KFIGEG------SRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~~~~~~------~~~v~~~~~~ 299 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+. ..++.+.+..
T Consensus 20 vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~ 99 (211)
T cd03225 20 ISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAF 99 (211)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHH
Confidence 46778899999999999999999999999998765 77777654311 011111 1123333221
Q ss_pred h-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 300 A-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 300 a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
+ .+..+.+.......+..+|+|++|+++++++ ..|.+|+||| |++++|+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE----------Pt~~LD~~~ 169 (211)
T cd03225 100 GLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE----------PTAGLDPAG 169 (211)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC----------CcccCCHHH
Confidence 1 1222233334455677899999999999998 8999999999 999999999
Q ss_pred HHHHHHHHHhccCCCC
Q psy6098 361 QRTMLELLNQLDGFEA 376 (378)
Q Consensus 361 ~~~~~~lL~~l~~~~~ 376 (378)
+..+.++|.++...+.
T Consensus 170 ~~~~~~~l~~~~~~~~ 185 (211)
T cd03225 170 RRELLELLKKLKAEGK 185 (211)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999998865443
No 113
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.62 E-value=6e-16 Score=139.11 Aligned_cols=129 Identities=23% Similarity=0.305 Sum_probs=94.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc------c---ccch-----hHHHHHHHHHH--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ------K---FIGE-----GSRMVRELFVM-- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~------~---~~~~-----~~~~v~~~~~~-- 299 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+ ...++.+.+..
T Consensus 24 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 103 (218)
T cd03266 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFA 103 (218)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHH
Confidence 35788899999999999999999999999998765 67776654321 0 1110 00122222211
Q ss_pred ---------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 300 ---------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 300 ---------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
..++.+.+.......+..+|+|++|+++++++ ..|++|+||| |++++|+..+.
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE----------Pt~~LD~~~~~ 173 (218)
T cd03266 104 GLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDE----------PTTGLDVMATR 173 (218)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcC----------CCcCCCHHHHH
Confidence 11333344455566788999999999999998 8999999999 99999999999
Q ss_pred HHHHHHHhccCCCC
Q psy6098 363 TMLELLNQLDGFEA 376 (378)
Q Consensus 363 ~~~~lL~~l~~~~~ 376 (378)
.+.++|.++...+.
T Consensus 174 ~l~~~l~~~~~~~~ 187 (218)
T cd03266 174 ALREFIRQLRALGK 187 (218)
T ss_pred HHHHHHHHHHHCCC
Confidence 99999998854443
No 114
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=6.4e-16 Score=139.18 Aligned_cols=126 Identities=18% Similarity=0.227 Sum_probs=92.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc------c---ccchh-----HHHHHHHHHH--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ------K---FIGEG-----SRMVRELFVM-- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~------~---~~~~~-----~~~v~~~~~~-- 299 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.++ .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 98 (220)
T cd03265 19 VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHA 98 (220)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHH
Confidence 46788999999999999999999999999998765 67777654311 0 11110 0122222211
Q ss_pred ---------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 300 ---------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 300 ---------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
..+..+.+.......+..+|+|++|++.++++ ..|.++++|| |++++|+..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDE----------Pt~~LD~~~~~ 168 (220)
T cd03265 99 RLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE----------PTIGLDPQTRA 168 (220)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------CccCCCHHHHH
Confidence 11333344444566778999999999999998 8999999999 99999999999
Q ss_pred HHHHHHHhccC
Q psy6098 363 TMLELLNQLDG 373 (378)
Q Consensus 363 ~~~~lL~~l~~ 373 (378)
.+.++|.++..
T Consensus 169 ~l~~~l~~~~~ 179 (220)
T cd03265 169 HVWEYIEKLKE 179 (220)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 115
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.62 E-value=6.2e-16 Score=138.61 Aligned_cols=129 Identities=23% Similarity=0.321 Sum_probs=93.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------c---ccchhH-----HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------K---FIGEGS-----RMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~---~~~~~~-----~~v~~~~ 297 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+.. .++.+.+
T Consensus 20 ~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l 99 (214)
T cd03292 20 INISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENV 99 (214)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHH
Confidence 46788999999999999999999999999998765 67777654321 0 111100 1222222
Q ss_pred HHh-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 298 VMA-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 298 ~~a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
... .++.+.+.......+..+|.|++|+++++++ ..|+|+++|| |++++|+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE----------Pt~~LD~ 169 (214)
T cd03292 100 AFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADE----------PTGNLDP 169 (214)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeC----------CCCcCCH
Confidence 111 1222333444455678899999999999998 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccCCCC
Q psy6098 359 EVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~~~ 376 (378)
..+..+.++|.++...+.
T Consensus 170 ~~~~~~~~~l~~~~~~~~ 187 (214)
T cd03292 170 DTTWEIMNLLKKINKAGT 187 (214)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999998854443
No 116
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.62 E-value=7.5e-16 Score=139.85 Aligned_cols=129 Identities=20% Similarity=0.206 Sum_probs=94.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------c---ccchh-----HHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------K---FIGEG-----SRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~---~~~~~-----~~~v~~~~~~ 299 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 98 (232)
T cd03218 19 VSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILA 98 (232)
T ss_pred ceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHH
Confidence 36788999999999999999999999999998765 67776643311 0 11110 0122222211
Q ss_pred -----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 300 -----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 300 -----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
..++.+.+.......+..+|.|++|++.++++ ..|.+|+||| |++++|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE----------Pt~~LD~~~ 168 (232)
T cd03218 99 VLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE----------PFAGVDPIA 168 (232)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC----------CcccCCHHH
Confidence 11223334455566778999999999999998 8999999999 999999999
Q ss_pred HHHHHHHHHhccCCCC
Q psy6098 361 QRTMLELLNQLDGFEA 376 (378)
Q Consensus 361 ~~~~~~lL~~l~~~~~ 376 (378)
+..+.++|.++...+.
T Consensus 169 ~~~~~~~l~~~~~~~~ 184 (232)
T cd03218 169 VQDIQKIIKILKDRGI 184 (232)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 9999999998865443
No 117
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=7e-16 Score=140.33 Aligned_cols=126 Identities=19% Similarity=0.251 Sum_probs=93.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------c---ccchh-----HHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------K---FIGEG-----SRMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~---~~~~~-----~~~v~~~~ 297 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 98 (235)
T cd03261 19 VDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENV 98 (235)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHH
Confidence 36789999999999999999999999999998765 77777654311 0 11111 11233322
Q ss_pred HHh------------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 298 VMA------------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 298 ~~a------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
... .+..+.+.......+..+|+|++|++.++++ ..|+||+||| |++++|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDE----------Pt~~LD 168 (235)
T cd03261 99 AFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDE----------PTAGLD 168 (235)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecC----------CcccCC
Confidence 211 1233334444566778999999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccC
Q psy6098 358 SEVQRTMLELLNQLDG 373 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~ 373 (378)
+..+..+.++|.++..
T Consensus 169 ~~~~~~l~~~l~~~~~ 184 (235)
T cd03261 169 PIASGVIDDLIRSLKK 184 (235)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998754
No 118
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.62 E-value=4.9e-16 Score=139.19 Aligned_cols=126 Identities=25% Similarity=0.233 Sum_probs=92.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------cccchh-----HHHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------KFIGEG-----SRMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~~~~~~-----~~~v~~~~~~--- 299 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+. ..++.+.+..
T Consensus 19 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 98 (213)
T cd03301 19 LNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLK 98 (213)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHH
Confidence 46788999999999999999999999999998765 67776654311 011111 0122222211
Q ss_pred --------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 300 --------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 300 --------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
..+..+.+.......+..+|.|++|+++++++ .+|++++||| |++++|+..++.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE----------Pt~~LD~~~~~~ 168 (213)
T cd03301 99 LRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE----------PLSNLDAKLRVQ 168 (213)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------CcccCCHHHHHH
Confidence 11233334444566778999999999999998 8999999999 999999999999
Q ss_pred HHHHHHhccC
Q psy6098 364 MLELLNQLDG 373 (378)
Q Consensus 364 ~~~lL~~l~~ 373 (378)
+.++|.++..
T Consensus 169 l~~~l~~~~~ 178 (213)
T cd03301 169 MRAELKRLQQ 178 (213)
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 119
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=7.4e-16 Score=141.79 Aligned_cols=124 Identities=22% Similarity=0.233 Sum_probs=91.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----cccchh-----HHHHHHHHHH------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----KFIGEG-----SRMVRELFVM------ 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----~~~~~~-----~~~v~~~~~~------ 299 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+. ..++.+.+..
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~ 99 (255)
T PRK11248 20 INLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAG 99 (255)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcC
Confidence 46788999999999999999999999999998765 77776654311 011110 0122222211
Q ss_pred -----------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHH
Q psy6098 300 -----------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLE 366 (378)
Q Consensus 300 -----------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~ 366 (378)
..+..+.+.......+..+|+|++|++.++++ ..|.+|+||| |++++|+..+..+.+
T Consensus 100 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDE----------Pt~~LD~~~~~~l~~ 169 (255)
T PRK11248 100 VEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDE----------PFGALDAFTREQMQT 169 (255)
T ss_pred CCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCccCCHHHHHHHHH
Confidence 11233334444456778999999999999998 8999999999 999999999999999
Q ss_pred HHHhc
Q psy6098 367 LLNQL 371 (378)
Q Consensus 367 lL~~l 371 (378)
+|.++
T Consensus 170 ~L~~~ 174 (255)
T PRK11248 170 LLLKL 174 (255)
T ss_pred HHHHH
Confidence 99987
No 120
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.61 E-value=9.4e-16 Score=144.52 Aligned_cols=126 Identities=17% Similarity=0.247 Sum_probs=94.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc---------ccch-----hHHHHHHHHHH--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK---------FIGE-----GSRMVRELFVM-- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~---------~~~~-----~~~~v~~~~~~-- 299 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.++ .|.+++.++... |+.+ ...++.+.+..
T Consensus 21 is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~ 100 (301)
T TIGR03522 21 VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIA 100 (301)
T ss_pred eEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHH
Confidence 36788999999999999999999999999998876 777777544210 1111 00122222211
Q ss_pred ---------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 300 ---------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 300 ---------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
..+..+.+.......+..+|.|++|++.++++ +.|.+||||| |++|+|+..+.
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDE----------Pt~gLD~~~~~ 170 (301)
T TIGR03522 101 GIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDE----------PTTGLDPNQLV 170 (301)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------CcccCCHHHHH
Confidence 11333344555567788999999999999998 9999999999 99999999999
Q ss_pred HHHHHHHhccC
Q psy6098 363 TMLELLNQLDG 373 (378)
Q Consensus 363 ~~~~lL~~l~~ 373 (378)
.++++|.++..
T Consensus 171 ~l~~~l~~~~~ 181 (301)
T TIGR03522 171 EIRNVIKNIGK 181 (301)
T ss_pred HHHHHHHHhcC
Confidence 99999999854
No 121
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=8.9e-16 Score=139.46 Aligned_cols=126 Identities=20% Similarity=0.227 Sum_probs=93.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----------c---ccchhH-----HHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----------K---FIGEGS-----RMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----------~---~~~~~~-----~~v~~~ 296 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+.. .++.+.
T Consensus 28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 107 (233)
T PRK11629 28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALEN 107 (233)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHH
Confidence 46789999999999999999999999999998765 77777654321 1 111110 122222
Q ss_pred HHH-----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 297 FVM-----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 297 ~~~-----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+.. ..+..+.+.......+..+|+|++|+++++++ .+|+||+||| |++++|
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE----------Pt~~LD 177 (233)
T PRK11629 108 VAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADE----------PTGNLD 177 (233)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCCCCC
Confidence 211 11233344444566778999999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccC
Q psy6098 358 SEVQRTMLELLNQLDG 373 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~ 373 (378)
+..+..+.++|.++..
T Consensus 178 ~~~~~~l~~~l~~~~~ 193 (233)
T PRK11629 178 ARNADSIFQLLGELNR 193 (233)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998843
No 122
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.61 E-value=9e-16 Score=147.25 Aligned_cols=126 Identities=22% Similarity=0.245 Sum_probs=96.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------------cccchhHHHHHHHHHHh--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------------KFIGEGSRMVRELFVMA-- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------------~~~~~~~~~v~~~~~~a-- 300 (378)
-++.+.+|+.++|+||||||||||+++|||...++ .|.+++.++.. .+.-....++.+++...
T Consensus 23 vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~ 102 (353)
T TIGR03265 23 ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLK 102 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHH
Confidence 46788899999999999999999999999998876 78888765421 11111111223322211
Q ss_pred ---------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 301 ---------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 301 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
.++.+.+.......+..+|+|++|+++++|+ ..|++++||| |++++|...+..
T Consensus 103 ~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDE----------P~s~LD~~~r~~ 172 (353)
T TIGR03265 103 NRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDE----------PLSALDARVREH 172 (353)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------CcccCCHHHHHH
Confidence 2334455666777888999999999999999 8999999999 999999999999
Q ss_pred HHHHHHhccC
Q psy6098 364 MLELLNQLDG 373 (378)
Q Consensus 364 ~~~lL~~l~~ 373 (378)
+.+.|+++..
T Consensus 173 l~~~L~~l~~ 182 (353)
T TIGR03265 173 LRTEIRQLQR 182 (353)
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 123
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.61 E-value=9.6e-16 Score=136.40 Aligned_cols=128 Identities=19% Similarity=0.154 Sum_probs=93.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------c--ccch-----hHHHHHHHHHH--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------K--FIGE-----GSRMVRELFVM-- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~--~~~~-----~~~~v~~~~~~-- 299 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+ ...++.+.+..
T Consensus 20 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~ 99 (204)
T PRK13538 20 LSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQ 99 (204)
T ss_pred ceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHH
Confidence 46789999999999999999999999999998865 67777654311 0 0100 00122222111
Q ss_pred ------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHH
Q psy6098 300 ------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML 365 (378)
Q Consensus 300 ------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~ 365 (378)
..++.+.+.......+..+|.|++|+++++++ ..|.++++|| |++++|+..+..+.
T Consensus 100 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE----------Pt~~LD~~~~~~l~ 169 (204)
T PRK13538 100 RLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDE----------PFTAIDKQGVARLE 169 (204)
T ss_pred HhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC----------CCccCCHHHHHHHH
Confidence 11233334444556778999999999999998 8999999999 99999999999999
Q ss_pred HHHHhccCCC
Q psy6098 366 ELLNQLDGFE 375 (378)
Q Consensus 366 ~lL~~l~~~~ 375 (378)
++|.++...+
T Consensus 170 ~~l~~~~~~~ 179 (204)
T PRK13538 170 ALLAQHAEQG 179 (204)
T ss_pred HHHHHHHHCC
Confidence 9999875434
No 124
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.61 E-value=8.2e-16 Score=138.52 Aligned_cols=126 Identities=24% Similarity=0.256 Sum_probs=92.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----------c---ccchh-----HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----------K---FIGEG-----SRMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----------~---~~~~~-----~~~v~~~ 296 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.
T Consensus 24 isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 103 (221)
T TIGR02211 24 VSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALEN 103 (221)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHH
Confidence 46788999999999999999999999999998765 67776644311 1 11111 1122222
Q ss_pred HHH-----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 297 FVM-----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 297 ~~~-----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+.. ..+..+.+.......+..+|+|++|++.++++ ..|+||+||| |++++|
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE----------Pt~~LD 173 (221)
T TIGR02211 104 VAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADE----------PTGNLD 173 (221)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC----------CCCcCC
Confidence 211 11222334444556778999999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccC
Q psy6098 358 SEVQRTMLELLNQLDG 373 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~ 373 (378)
+..+..+.++|.++..
T Consensus 174 ~~~~~~l~~~l~~~~~ 189 (221)
T TIGR02211 174 NNNAKIIFDLMLELNR 189 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998753
No 125
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.61 E-value=1e-15 Score=138.21 Aligned_cols=128 Identities=17% Similarity=0.069 Sum_probs=92.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccc--cc-ccchhHHHHHHHHHH-------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELV--QK-FIGEGSRMVRELFVM------------- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~--~~-~~~~~~~~v~~~~~~------------- 299 (378)
-+|.+.+|+.++|.||||+|||||+++|+|...+. .|.+++.++. .. ..-....++.+.+..
T Consensus 41 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~ 120 (224)
T cd03220 41 VSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEID 120 (224)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHH
Confidence 35788999999999999999999999999998765 7777765431 10 000001111111111
Q ss_pred ----hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 300 ----ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 300 ----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
..++.+.+.......+..+|+|++|++.++++ .+|++|+||| |++++|+..++.+.++|.++..
T Consensus 121 ~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE----------P~~gLD~~~~~~~~~~l~~~~~ 190 (224)
T cd03220 121 EKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE----------VLAVGDAAFQEKCQRRLRELLK 190 (224)
T ss_pred HHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHh
Confidence 01222334444556778999999999999998 8999999999 9999999999999999988754
Q ss_pred CC
Q psy6098 374 FE 375 (378)
Q Consensus 374 ~~ 375 (378)
.+
T Consensus 191 ~~ 192 (224)
T cd03220 191 QG 192 (224)
T ss_pred CC
Confidence 44
No 126
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=7.6e-16 Score=147.55 Aligned_cols=126 Identities=25% Similarity=0.253 Sum_probs=95.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------------cccchhHHHHHHHHHHh--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------------KFIGEGSRMVRELFVMA-- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------------~~~~~~~~~v~~~~~~a-- 300 (378)
-++.+.+|+.++|.||||||||||+++|+|+..++ .|.+++.++.. .+.-....++.+++...
T Consensus 25 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~ 104 (351)
T PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLK 104 (351)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHh
Confidence 46788999999999999999999999999999876 78888765421 11111111222222211
Q ss_pred ---------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 301 ---------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 301 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
.++.+.+.......+..+|+|++||++++|+ ..|+||+||| |++++|+..+..
T Consensus 105 ~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDE----------P~s~LD~~~r~~ 174 (351)
T PRK11432 105 MLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDE----------PLSNLDANLRRS 174 (351)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC----------CcccCCHHHHHH
Confidence 1333344555667788999999999999999 8999999999 999999999999
Q ss_pred HHHHHHhccC
Q psy6098 364 MLELLNQLDG 373 (378)
Q Consensus 364 ~~~lL~~l~~ 373 (378)
+.+.|.++..
T Consensus 175 l~~~l~~l~~ 184 (351)
T PRK11432 175 MREKIRELQQ 184 (351)
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 127
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.61 E-value=1.5e-15 Score=159.80 Aligned_cols=152 Identities=22% Similarity=0.353 Sum_probs=114.6
Q ss_pred ecCccccccccCccchhhcccchhhhhhhcCCCCchhhhhhccccCCCCCcc------------------cccCcHHHHH
Q psy6098 160 DIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYE------------------MVGGLDNQIK 221 (378)
Q Consensus 160 ~l~~~i~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~------------------~i~g~~~~~~ 221 (378)
.+...++...+++..+....++..++.++.+.+.++.+.+.+++++...+|. +++|++++++
T Consensus 251 ~~~~k~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~ 330 (775)
T TIGR00763 251 KLKEKLEELKLPEEVKKVIEKELTKLSLLEPSSSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKE 330 (775)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHH
Confidence 4455666667888888888888889999999888888888888777777664 5789999999
Q ss_pred HHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCccc---------ccccchhHHH
Q psy6098 222 EIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV---------QKFIGEGSRM 292 (378)
Q Consensus 222 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~---------~~~~~~~~~~ 292 (378)
.|.+++..+... +-..+.+++|+||||||||+++++||+.++.+++.++...+. ..|+|.....
T Consensus 331 ~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~ 403 (775)
T TIGR00763 331 RILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGR 403 (775)
T ss_pred HHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCch
Confidence 999877653221 122455899999999999999999999999998888654331 2456666666
Q ss_pred HHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCC
Q psy6098 293 VRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSS 348 (378)
Q Consensus 293 v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~ 348 (378)
+.+.|..+ ....| ||||||||++.+.
T Consensus 404 i~~~l~~~-----------------------------~~~~~-villDEidk~~~~ 429 (775)
T TIGR00763 404 IIQGLKKA-----------------------------KTKNP-LFLLDEIDKIGSS 429 (775)
T ss_pred HHHHHHHh-----------------------------CcCCC-EEEEechhhcCCc
Confidence 66666554 23344 9999999999864
No 128
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.61 E-value=1.7e-15 Score=124.58 Aligned_cols=72 Identities=31% Similarity=0.469 Sum_probs=68.7
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcC-CCCCceEEEeehhhhhhcc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKG-SSRGTEFFTMDVDEAIKSS 79 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~-~~~~~ilf~DEid~~~~~~ 79 (378)
++.||||||||++|+.+|+.++.+|+.++++++.+.+.+++++.++.+|+.|+..+ |+ |+||||+|.++...
T Consensus 2 ll~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPC---VLFIDEIDKLFPKS 74 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSE---EEEEETGGGTSHHC
T ss_pred EEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccce---eeeeccchhccccc
Confidence 46899999999999999999999999999999999999999999999999999887 87 99999999999876
No 129
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.61 E-value=1.3e-15 Score=137.41 Aligned_cols=129 Identities=19% Similarity=0.293 Sum_probs=93.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------c---ccchh-----HHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------K---FIGEG-----SRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~---~~~~~-----~~~v~~~~~~ 299 (378)
-+|.+.+|+.++|.||||+|||||+++|+|...+. .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 98 (222)
T cd03224 19 VSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLL 98 (222)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHH
Confidence 46788999999999999999999999999998765 67777654311 1 11111 0122222221
Q ss_pred h---------------hhhhh-hhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHH
Q psy6098 300 A---------------SLKKL-AFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 361 (378)
Q Consensus 300 a---------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~ 361 (378)
. .+..+ .+.......+..+|.|++|++.++++ ..|++|++|| |++++|+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE----------Pt~~LD~~~~ 168 (222)
T cd03224 99 GAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE----------PSEGLAPKIV 168 (222)
T ss_pred HhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECC----------CcccCCHHHH
Confidence 1 12222 12334456677899999999999998 8999999999 9999999999
Q ss_pred HHHHHHHHhccCCCC
Q psy6098 362 RTMLELLNQLDGFEA 376 (378)
Q Consensus 362 ~~~~~lL~~l~~~~~ 376 (378)
..++++|.++...+.
T Consensus 169 ~~l~~~l~~~~~~~~ 183 (222)
T cd03224 169 EEIFEAIRELRDEGV 183 (222)
T ss_pred HHHHHHHHHHHHCCC
Confidence 999999998864443
No 130
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.61 E-value=1.5e-15 Score=134.59 Aligned_cols=129 Identities=18% Similarity=0.176 Sum_probs=93.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc------c---ccch-----hHHHHHHHHHH--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ------K---FIGE-----GSRMVRELFVM-- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~------~---~~~~-----~~~~v~~~~~~-- 299 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+ ...++.+.+..
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 98 (198)
T TIGR01189 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWA 98 (198)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHH
Confidence 46788999999999999999999999999998765 67776654311 0 1111 00122222111
Q ss_pred -----------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHH
Q psy6098 300 -----------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLE 366 (378)
Q Consensus 300 -----------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~ 366 (378)
..++.+.+.......+..+|.|++|++.++++ ..|.++++|| |++++|+..+..+.+
T Consensus 99 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE----------Pt~~LD~~~~~~l~~ 168 (198)
T TIGR01189 99 AIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDE----------PTTALDKAGVALLAG 168 (198)
T ss_pred HHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC----------CCcCCCHHHHHHHHH
Confidence 11223334444556778999999999999998 8999999999 999999999999999
Q ss_pred HHHhccCCCC
Q psy6098 367 LLNQLDGFEA 376 (378)
Q Consensus 367 lL~~l~~~~~ 376 (378)
+|.++...+.
T Consensus 169 ~l~~~~~~~~ 178 (198)
T TIGR01189 169 LLRAHLARGG 178 (198)
T ss_pred HHHHHHhCCC
Confidence 9998754443
No 131
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.61 E-value=1.2e-15 Score=136.69 Aligned_cols=129 Identities=22% Similarity=0.293 Sum_probs=94.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc---------c---ccchh-----HHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ---------K---FIGEG-----SRMVRELFV 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~---------~---~~~~~-----~~~v~~~~~ 298 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ...+.+.+.
T Consensus 19 ~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 98 (213)
T cd03262 19 IDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENIT 98 (213)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHH
Confidence 46788999999999999999999999999998765 77777654411 0 11110 012222221
Q ss_pred H------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 299 M------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 299 ~------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
. ..++.+.+.......+..+|.|++|++.++++ .+|++++||| |++++|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE----------P~~~LD~ 168 (213)
T cd03262 99 LAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDE----------PTSALDP 168 (213)
T ss_pred hHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeC----------CccCCCH
Confidence 1 11222334444566778899999999999998 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccCCCC
Q psy6098 359 EVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~~~ 376 (378)
..+..+.++|.++...+.
T Consensus 169 ~~~~~l~~~l~~~~~~~~ 186 (213)
T cd03262 169 ELVGEVLDVMKDLAEEGM 186 (213)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999998864443
No 132
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.61 E-value=1.3e-15 Score=135.27 Aligned_cols=129 Identities=18% Similarity=0.163 Sum_probs=94.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc---------ccch-----hHHHHHHHHHH--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK---------FIGE-----GSRMVRELFVM-- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~---------~~~~-----~~~~v~~~~~~-- 299 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++... |+.+ ...++.+.+..
T Consensus 19 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 98 (201)
T cd03231 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWH 98 (201)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhc
Confidence 46788999999999999999999999999998765 677766543110 1110 00122222211
Q ss_pred ---------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHH
Q psy6098 300 ---------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELL 368 (378)
Q Consensus 300 ---------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL 368 (378)
..++.+.+.......+..+|.|++|++.++++ ..|++|++|| |++++|+..++.+.++|
T Consensus 99 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE----------Pt~~LD~~~~~~l~~~l 168 (201)
T cd03231 99 ADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDE----------PTTALDKAGVARFAEAM 168 (201)
T ss_pred ccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCCCCCHHHHHHHHHHH
Confidence 11333344444566788999999999999998 8999999999 99999999999999999
Q ss_pred HhccCCCC
Q psy6098 369 NQLDGFEA 376 (378)
Q Consensus 369 ~~l~~~~~ 376 (378)
.++...+.
T Consensus 169 ~~~~~~g~ 176 (201)
T cd03231 169 AGHCARGG 176 (201)
T ss_pred HHHHhCCC
Confidence 88754443
No 133
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=1.1e-15 Score=146.47 Aligned_cols=126 Identities=24% Similarity=0.302 Sum_probs=94.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------c---ccch-----hHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------K---FIGE-----GSRMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~---~~~~-----~~~~v~~~~ 297 (378)
-+|.+.+|+.++|.||||+|||||+|+|+|.+.+. .|.+++.++.. . |+.+ ...++.+.+
T Consensus 24 vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni 103 (343)
T PRK11153 24 VSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNV 103 (343)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHH
Confidence 46789999999999999999999999999999875 77787754421 0 1111 011233332
Q ss_pred HHh-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 298 VMA-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 298 ~~a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
... .++.+.+.......+..||+|++|++.++++ ..|+|||||| |++++|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDE----------Pts~LD~ 173 (343)
T PRK11153 104 ALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDE----------ATSALDP 173 (343)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC----------CcccCCH
Confidence 211 1233334455566778999999999999998 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccC
Q psy6098 359 EVQRTMLELLNQLDG 373 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~ 373 (378)
..+..+.++|.++..
T Consensus 174 ~~~~~l~~~L~~l~~ 188 (343)
T PRK11153 174 ATTRSILELLKDINR 188 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998853
No 134
>CHL00176 ftsH cell division protein; Validated
Probab=99.60 E-value=2.2e-16 Score=161.04 Aligned_cols=141 Identities=24% Similarity=0.317 Sum_probs=98.8
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
++.||||||||++||++|.+++.+|+.++++++.+.|+|.++++++.+|+.|+..+|| ||||||+|+++..++....
T Consensus 220 LL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~---ILfIDEID~l~~~r~~~~~ 296 (638)
T CHL00176 220 LLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPC---IVFIDEIDAVGRQRGAGIG 296 (638)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCc---EEEEecchhhhhcccCCCC
Confidence 6789999999999999999999999999999999999999999999999999999999 9999999999876532111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccccccccccccccc---cceeeccCC
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQA----QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKK---KVLVKVHPE 154 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~----~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~---~~i~~~~~~ 154 (378)
... .+....+..+...+..+.. ..-...+.++.++ +++.+++||+..+...+|+. ..+++.+..
T Consensus 297 ~~~---~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD---~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~ 367 (638)
T CHL00176 297 GGN---DEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILD---AALLRPGRFDRQITVSLPDREGRLDILKVHAR 367 (638)
T ss_pred CCc---HHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhh---hhhhccccCceEEEECCCCHHHHHHHHHHHHh
Confidence 111 1111112221111111100 0011134445555 67889999999988777763 345555433
No 135
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=1.2e-15 Score=138.65 Aligned_cols=126 Identities=23% Similarity=0.295 Sum_probs=93.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------c---ccchh-----HHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------K---FIGEG-----SRMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~---~~~~~-----~~~v~~~~ 297 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+
T Consensus 24 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 103 (233)
T cd03258 24 VSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENV 103 (233)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHH
Confidence 36789999999999999999999999999999875 77777755421 0 11110 01222222
Q ss_pred HHh-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 298 VMA-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 298 ~~a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
... .++.+.+.......+..+|.|++|++.++++ ..|++++||| |++++|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDE----------P~~~LD~ 173 (233)
T cd03258 104 ALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDE----------ATSALDP 173 (233)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecC----------CCCcCCH
Confidence 110 1233334444556678899999999999998 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccC
Q psy6098 359 EVQRTMLELLNQLDG 373 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~ 373 (378)
..+..+.++|.++..
T Consensus 174 ~~~~~l~~~l~~~~~ 188 (233)
T cd03258 174 ETTQSILALLRDINR 188 (233)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998754
No 136
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.60 E-value=1.1e-15 Score=146.60 Aligned_cols=126 Identities=24% Similarity=0.260 Sum_probs=96.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----------cccch--------hHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----------KFIGE--------GSRMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----------~~~~~--------~~~~v~~~ 296 (378)
-+|.+.+|+.++|.||||||||||+++|+|+..+. .|.+++.++.. ..++. ...++.++
T Consensus 12 vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eN 91 (363)
T TIGR01186 12 ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQN 91 (363)
T ss_pred eEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHH
Confidence 46789999999999999999999999999999876 78888765431 11110 01122222
Q ss_pred HHH-----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 297 FVM-----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 297 ~~~-----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+.. ..++.+.+.......+..||+|++|+++++|+ .+|+||+||| |++++|
T Consensus 92 i~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE----------P~saLD 161 (363)
T TIGR01186 92 TSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDE----------AFSALD 161 (363)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CcccCC
Confidence 211 11334455566777888999999999999999 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccC
Q psy6098 358 SEVQRTMLELLNQLDG 373 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~ 373 (378)
+..+..+.++|.++..
T Consensus 162 ~~~r~~l~~~l~~l~~ 177 (363)
T TIGR01186 162 PLIRDSMQDELKKLQA 177 (363)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988853
No 137
>PRK10908 cell division protein FtsE; Provisional
Probab=99.60 E-value=1.5e-15 Score=136.89 Aligned_cols=128 Identities=19% Similarity=0.269 Sum_probs=93.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------c---ccchh-----HHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------K---FIGEG-----SRMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~---~~~~~-----~~~v~~~~ 297 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 100 (222)
T PRK10908 21 VTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNV 100 (222)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHH
Confidence 46788999999999999999999999999998765 77777654321 0 11111 11222222
Q ss_pred HHh-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 298 VMA-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 298 ~~a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
... .++.+.+.......+..+|.|++|+++++++ ..|.+|+||| |++++|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE----------Pt~~LD~ 170 (222)
T PRK10908 101 AIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADE----------PTGNLDD 170 (222)
T ss_pred HhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC----------CCCcCCH
Confidence 211 1222333344456678999999999999998 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccCCC
Q psy6098 359 EVQRTMLELLNQLDGFE 375 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~~ 375 (378)
..+..+.++|.++...+
T Consensus 171 ~~~~~l~~~l~~~~~~~ 187 (222)
T PRK10908 171 ALSEGILRLFEEFNRVG 187 (222)
T ss_pred HHHHHHHHHHHHHHHCC
Confidence 99999999999885433
No 138
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.60 E-value=1.6e-15 Score=136.49 Aligned_cols=126 Identities=19% Similarity=0.193 Sum_probs=93.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc---------ccchh-----HHHHHHHHHH--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK---------FIGEG-----SRMVRELFVM-- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~---------~~~~~-----~~~v~~~~~~-- 299 (378)
.++.+.+|+.++|.||||+|||||+++|+|...+. .|.+++.++... |+.+. ..++.+.+..
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 100 (220)
T cd03263 21 LSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYA 100 (220)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHH
Confidence 46789999999999999999999999999998765 777776554210 11110 1122222211
Q ss_pred ---------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 300 ---------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 300 ---------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
..++.+.+.......+..+|.|++|++.++++ .+|++|++|| |++++|+..+.
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE----------P~~~LD~~~~~ 170 (220)
T cd03263 101 RLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE----------PTSGLDPASRR 170 (220)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECC----------CCCCCCHHHHH
Confidence 11223334444456678999999999999998 8999999999 99999999999
Q ss_pred HHHHHHHhccC
Q psy6098 363 TMLELLNQLDG 373 (378)
Q Consensus 363 ~~~~lL~~l~~ 373 (378)
.+.++|.++..
T Consensus 171 ~l~~~l~~~~~ 181 (220)
T cd03263 171 AIWDLILEVRK 181 (220)
T ss_pred HHHHHHHHHhc
Confidence 99999998754
No 139
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.60 E-value=1.2e-15 Score=140.33 Aligned_cols=125 Identities=20% Similarity=0.195 Sum_probs=92.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----cccch-----hHHHHHHHHHH------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----KFIGE-----GSRMVRELFVM------ 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----~~~~~-----~~~~v~~~~~~------ 299 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.++ .|.+++..+.. .|+.+ ...++.+.+..
T Consensus 31 isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~ 110 (257)
T PRK11247 31 LDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQW 110 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchH
Confidence 46788999999999999999999999999998765 66665543210 01111 01122222211
Q ss_pred -----hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 300 -----ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 300 -----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
..++.+.+.......+..+|+|++|++.++++ ..|++++||| |++++|+..+..+.++|.++.
T Consensus 111 ~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDE----------Pt~~LD~~~~~~l~~~L~~~~ 180 (257)
T PRK11247 111 RDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDE----------PLGALDALTRIEMQDLIESLW 180 (257)
T ss_pred HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHH
Confidence 11333444455566778999999999999998 8999999999 999999999999999998873
No 140
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.60 E-value=9.3e-16 Score=148.19 Aligned_cols=126 Identities=22% Similarity=0.193 Sum_probs=94.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----c---ccch-----hHHHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----K---FIGE-----GSRMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----~---~~~~-----~~~~v~~~~~~--- 299 (378)
-++.+.+|+.++|.||||||||||+++|+|.+.++ .|.+++.++.. . |+.+ ...++.+.+..
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~ 101 (369)
T PRK11000 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLK 101 (369)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHh
Confidence 46788899999999999999999999999998875 77777754421 0 1111 01122222211
Q ss_pred --------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 300 --------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 300 --------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
..++.+.+.......+..||+|++|+++++++ ..|+||+||| |++++|+..+..
T Consensus 102 ~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDE----------Pts~LD~~~~~~ 171 (369)
T PRK11000 102 LAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE----------PLSNLDAALRVQ 171 (369)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CcccCCHHHHHH
Confidence 11333445555667788999999999999998 8999999999 999999999999
Q ss_pred HHHHHHhccC
Q psy6098 364 MLELLNQLDG 373 (378)
Q Consensus 364 ~~~lL~~l~~ 373 (378)
+.++|.++..
T Consensus 172 l~~~L~~l~~ 181 (369)
T PRK11000 172 MRIEISRLHK 181 (369)
T ss_pred HHHHHHHHHH
Confidence 9999988743
No 141
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.60 E-value=1.6e-15 Score=138.04 Aligned_cols=129 Identities=19% Similarity=0.172 Sum_probs=94.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------c---ccchh-----HHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------K---FIGEG-----SRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~---~~~~~-----~~~v~~~~~~ 299 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 19 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~ 98 (236)
T cd03219 19 VSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMV 98 (236)
T ss_pred ceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHH
Confidence 36788999999999999999999999999998765 67776643311 0 11110 0122222111
Q ss_pred ---------------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 300 ---------------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 300 ---------------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
..++.+.+.......+..+|+|++|++.++++ ..|++|++||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE--------- 169 (236)
T cd03219 99 AAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDE--------- 169 (236)
T ss_pred HHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC---------
Confidence 11233334455566788999999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
|++++|+..+..+.++|.++...+.
T Consensus 170 -Pt~~LD~~~~~~l~~~l~~~~~~~~ 194 (236)
T cd03219 170 -PAAGLNPEETEELAELIRELRERGI 194 (236)
T ss_pred -CcccCCHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999998864443
No 142
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.60 E-value=1.1e-15 Score=148.55 Aligned_cols=129 Identities=24% Similarity=0.223 Sum_probs=95.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccchh-----HHHHHHHHHH-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGEG-----SRMVRELFVM- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~~-----~~~v~~~~~~- 299 (378)
-+|.+.+|+.++|.||||+|||||+|+|+|++.+. .|.+++.++... |+.+. ...+.+++..
T Consensus 22 vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~ 101 (402)
T PRK09536 22 VDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMG 101 (402)
T ss_pred eEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhc
Confidence 46788999999999999999999999999998875 788877544210 11110 0012221111
Q ss_pred --------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 300 --------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 300 --------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
..++.+.+.......+..+|+|++|++.++++ +.|.|||||| |++++|
T Consensus 102 ~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDE----------PtsgLD 171 (402)
T PRK09536 102 RTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDE----------PTASLD 171 (402)
T ss_pred cchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC----------CcccCC
Confidence 11333344455566788999999999999998 9999999999 999999
Q ss_pred hHHHHHHHHHHHhccCCCC
Q psy6098 358 SEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~~~~ 376 (378)
+..+..++++|+++...+.
T Consensus 172 ~~~~~~l~~lL~~l~~~g~ 190 (402)
T PRK09536 172 INHQVRTLELVRRLVDDGK 190 (402)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999999865443
No 143
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.60 E-value=1.8e-15 Score=134.21 Aligned_cols=128 Identities=17% Similarity=0.135 Sum_probs=93.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc---------ccch-----hHHHHHHHHHHh-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK---------FIGE-----GSRMVRELFVMA- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~---------~~~~-----~~~~v~~~~~~a- 300 (378)
.++.+.+|+.++|.||||+|||||+++|+|...+. .|.+++.++... |+.+ ...++.+.+...
T Consensus 20 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~ 99 (200)
T PRK13540 20 ISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDI 99 (200)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHH
Confidence 46788899999999999999999999999998765 778877654210 1111 111233332211
Q ss_pred -----------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHH
Q psy6098 301 -----------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL 367 (378)
Q Consensus 301 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~l 367 (378)
.++.+.+.......+..+|.|++|++.++++ ..|+++++|| |++++|+..+..+.++
T Consensus 100 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDE----------P~~~LD~~~~~~l~~~ 169 (200)
T PRK13540 100 HFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDE----------PLVALDELSLLTIITK 169 (200)
T ss_pred hcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC----------CCcccCHHHHHHHHHH
Confidence 1222223333345667899999999999998 8999999999 9999999999999999
Q ss_pred HHhccCCC
Q psy6098 368 LNQLDGFE 375 (378)
Q Consensus 368 L~~l~~~~ 375 (378)
|.++...+
T Consensus 170 l~~~~~~~ 177 (200)
T PRK13540 170 IQEHRAKG 177 (200)
T ss_pred HHHHHHcC
Confidence 99874333
No 144
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.60 E-value=1.8e-15 Score=137.76 Aligned_cols=125 Identities=22% Similarity=0.224 Sum_probs=92.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc---------cccch-----hHHHHHHHHHH--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ---------KFIGE-----GSRMVRELFVM-- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~---------~~~~~-----~~~~v~~~~~~-- 299 (378)
-++.+.+|+.++|.||||+|||||+++|+|...+. .|.+++.++.. .|+.+ ...++.+.+..
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~ 99 (236)
T TIGR03864 20 VSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHA 99 (236)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHH
Confidence 35788999999999999999999999999998765 67777654311 01111 01122222211
Q ss_pred ---------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 300 ---------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 300 ---------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
..++.+.+.......+..+|+|++|+++++++ ..|+|++||| |++++|+..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE----------P~~~LD~~~~~ 169 (236)
T TIGR03864 100 ALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDE----------PTVGLDPASRA 169 (236)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------CccCCCHHHHH
Confidence 11223334444566778999999999999998 8999999999 99999999999
Q ss_pred HHHHHHHhcc
Q psy6098 363 TMLELLNQLD 372 (378)
Q Consensus 363 ~~~~lL~~l~ 372 (378)
.+.++|.++.
T Consensus 170 ~l~~~l~~~~ 179 (236)
T TIGR03864 170 AIVAHVRALC 179 (236)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 145
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.60 E-value=1.9e-15 Score=133.55 Aligned_cols=129 Identities=16% Similarity=0.119 Sum_probs=93.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc------cccchh-----HHHHHHHHHH-----
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ------KFIGEG-----SRMVRELFVM----- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~------~~~~~~-----~~~v~~~~~~----- 299 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+. ..++.+.+..
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~ 98 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIY 98 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhc
Confidence 46788999999999999999999999999998765 77887765421 011110 0122222211
Q ss_pred -------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHh
Q psy6098 300 -------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ 370 (378)
Q Consensus 300 -------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~ 370 (378)
+.++.+.+.......+..+|.|++|++.++++ ..|.+++||| |++++|+..+..+.++|.+
T Consensus 99 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDE----------P~~~LD~~~~~~l~~~l~~ 168 (195)
T PRK13541 99 NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDE----------VETNLSKENRDLLNNLIVM 168 (195)
T ss_pred ccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CcccCCHHHHHHHHHHHHH
Confidence 11233333444566778999999999999998 8999999999 9999999999999999976
Q ss_pred ccCCCC
Q psy6098 371 LDGFEA 376 (378)
Q Consensus 371 l~~~~~ 376 (378)
+...+.
T Consensus 169 ~~~~~~ 174 (195)
T PRK13541 169 KANSGG 174 (195)
T ss_pred HHhCCC
Confidence 544443
No 146
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.60 E-value=1.4e-15 Score=146.18 Aligned_cols=127 Identities=21% Similarity=0.230 Sum_probs=95.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc----eEEEeccCcccc-------------cccchhHHHHHHHHHH-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC----TFIRVSGSELVQ-------------KFIGEGSRMVRELFVM- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~----~~i~~~~~~l~~-------------~~~~~~~~~v~~~~~~- 299 (378)
-++.+.+|+.++|+||||||||||+++|||+..+ ..|.+++.++.. .+.-....++.+++..
T Consensus 24 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~ 103 (362)
T TIGR03258 24 LSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFG 103 (362)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHH
Confidence 3677889999999999999999999999999876 457777654411 1111111123332221
Q ss_pred ----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHH
Q psy6098 300 ----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 361 (378)
Q Consensus 300 ----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~ 361 (378)
..++.+.+.......+..||+|++|+++++|+ ..|.||+||| |++++|+..+
T Consensus 104 l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDE----------P~s~LD~~~r 173 (362)
T TIGR03258 104 LRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDE----------PLSALDANIR 173 (362)
T ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------ccccCCHHHH
Confidence 12344455666777889999999999999999 8999999999 9999999999
Q ss_pred HHHHHHHHhccCC
Q psy6098 362 RTMLELLNQLDGF 374 (378)
Q Consensus 362 ~~~~~lL~~l~~~ 374 (378)
..+.++|.++...
T Consensus 174 ~~l~~~l~~l~~~ 186 (362)
T TIGR03258 174 ANMREEIAALHEE 186 (362)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887643
No 147
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=2.2e-15 Score=129.64 Aligned_cols=128 Identities=22% Similarity=0.161 Sum_probs=95.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccch---------------hHHHHHHHHHHh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGE---------------GSRMVRELFVMA 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~---------------~~~~v~~~~~~a 300 (378)
-++.+.+|+.++++||||+|||||+|+++|++.++ .+.+++.++.+....+ ..-.+.++.++.
T Consensus 20 vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mG 99 (259)
T COG4559 20 VSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMG 99 (259)
T ss_pred cceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhc
Confidence 35678899999999999999999999999999976 7888887663221000 000122222221
Q ss_pred -------------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--------CCCeEEEEecCccccCCCCCCC
Q psy6098 301 -------------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--------HAPSIIFMDEIDSIGSSRIESG 353 (378)
Q Consensus 301 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~p~vl~lDEid~~~~~r~~~~ 353 (378)
.+............+-.||+|++||+..+|- ..+.++|||| |+
T Consensus 100 r~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDE----------Pt 169 (259)
T COG4559 100 RIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDE----------PT 169 (259)
T ss_pred ccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecC----------Cc
Confidence 1333345566677788999999999999886 3456999999 99
Q ss_pred CCCChHHHHHHHHHHHhccCCC
Q psy6098 354 SGGDSEVQRTMLELLNQLDGFE 375 (378)
Q Consensus 354 ~~~d~~~~~~~~~lL~~l~~~~ 375 (378)
+++|...+..++++.+++-..|
T Consensus 170 saLDi~HQ~~tl~laR~la~~g 191 (259)
T COG4559 170 SALDIAHQHHTLRLARQLAREG 191 (259)
T ss_pred cccchHHHHHHHHHHHHHHhcC
Confidence 9999999999999999887655
No 148
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.60 E-value=1.3e-16 Score=164.15 Aligned_cols=142 Identities=23% Similarity=0.297 Sum_probs=101.9
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
++.||||||||++|+++|++++.+|+.++++++.+.|.|.++.+++++|+.|++.+|| |+||||+|+++..++....
T Consensus 189 ll~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~---IifIDEiD~l~~~r~~~~~ 265 (644)
T PRK10733 189 LMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPC---IIFIDEIDAVGRQRGAGLG 265 (644)
T ss_pred EEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCc---EEEehhHhhhhhccCCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999 9999999999977643111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccccccccccccc---ccceeeccCCC
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQ----RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDK---KKVLVKVHPEG 155 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~---~~~i~~~~~~~ 155 (378)
....... ..++.+...+..+... .-...+.++.++ +++.+++||++.+...+|+ +..+++.+...
T Consensus 266 g~~~~~~---~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD---~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 266 GGHDERE---QTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD---PALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred CCchHHH---HHHHHHHHhhhcccCCCCeeEEEecCChhhcC---HHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 1111111 1122221112111110 111234555555 7888999999999998887 34555555433
No 149
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.60 E-value=1.3e-15 Score=146.91 Aligned_cols=126 Identities=22% Similarity=0.229 Sum_probs=96.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------------cccchhHHHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------------KFIGEGSRMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------------~~~~~~~~~v~~~~~~--- 299 (378)
-++.+.+|+.++|.||||||||||+++|||+..++ .|.+++.++.. .+.-....++.+++..
T Consensus 33 vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~ 112 (375)
T PRK09452 33 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLR 112 (375)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHh
Confidence 46788999999999999999999999999999875 78888765521 1100011122222211
Q ss_pred --------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 300 --------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 300 --------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
..++.+.+.......+..||+|++|+++++|+ ..|+||+||| |++++|...+..
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDE----------P~s~LD~~~r~~ 182 (375)
T PRK09452 113 MQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDE----------SLSALDYKLRKQ 182 (375)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCCcCCHHHHHH
Confidence 11333445566677888999999999999998 8999999999 999999999999
Q ss_pred HHHHHHhccC
Q psy6098 364 MLELLNQLDG 373 (378)
Q Consensus 364 ~~~lL~~l~~ 373 (378)
+.++|.++..
T Consensus 183 l~~~L~~l~~ 192 (375)
T PRK09452 183 MQNELKALQR 192 (375)
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 150
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.59 E-value=1.4e-15 Score=137.87 Aligned_cols=126 Identities=19% Similarity=0.153 Sum_probs=92.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----cccchh-----HHHHHHHHHH------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----KFIGEG-----SRMVRELFVM------ 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----~~~~~~-----~~~v~~~~~~------ 299 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+. ..++.+.+..
T Consensus 4 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~ 83 (230)
T TIGR01184 4 VNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVL 83 (230)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcc
Confidence 36788999999999999999999999999998765 77777654421 111110 0122222111
Q ss_pred -------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHH
Q psy6098 300 -------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 364 (378)
Q Consensus 300 -------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~ 364 (378)
..++.+.+.......+..+|+|++|++.++++ ..|.+|+||| |++++|+..+..+
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE----------Pt~gLD~~~~~~l 153 (230)
T TIGR01184 84 PDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDE----------PFGALDALTRGNL 153 (230)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC----------CCcCCCHHHHHHH
Confidence 11222334444556778899999999999998 8999999999 9999999999999
Q ss_pred HHHHHhccC
Q psy6098 365 LELLNQLDG 373 (378)
Q Consensus 365 ~~lL~~l~~ 373 (378)
.++|.++..
T Consensus 154 ~~~l~~~~~ 162 (230)
T TIGR01184 154 QEELMQIWE 162 (230)
T ss_pred HHHHHHHHH
Confidence 999988743
No 151
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.59 E-value=2.2e-15 Score=125.01 Aligned_cols=125 Identities=19% Similarity=0.228 Sum_probs=92.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccchhHH--------------HHHHHHHH--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGEGSR--------------MVRELFVM-- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~~~~--------------~v~~~~~~-- 299 (378)
.++.+.+|+.++|.||+|||||||.|++|.+..++ .+.+.|.++..-.+..... +|..++..
T Consensus 22 isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~ 101 (223)
T COG4619 22 ISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPW 101 (223)
T ss_pred eeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccch
Confidence 57889999999999999999999999999999887 8888887763321111111 11111110
Q ss_pred -------------hhhhhhhh-ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 300 -------------ASLKKLAF-AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 300 -------------a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
..+.++.+ .......+..+|+|++|+++++|. ..|.||+||| +++++|+...+.
T Consensus 102 ~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE----------~TsALD~~nkr~ 171 (223)
T COG4619 102 QIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDE----------ITSALDESNKRN 171 (223)
T ss_pred HHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecC----------chhhcChhhHHH
Confidence 01222222 345566788999999999999998 8999999999 999999999999
Q ss_pred HHHHHHhcc
Q psy6098 364 MLELLNQLD 372 (378)
Q Consensus 364 ~~~lL~~l~ 372 (378)
+.+++-.+-
T Consensus 172 ie~mi~~~v 180 (223)
T COG4619 172 IEEMIHRYV 180 (223)
T ss_pred HHHHHHHHh
Confidence 998887653
No 152
>CHL00181 cbbX CbbX; Provisional
Probab=99.59 E-value=2.5e-15 Score=140.08 Aligned_cols=106 Identities=26% Similarity=0.385 Sum_probs=86.3
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhhhcCCCCC---cceeEeCCCCCchHHHHHHHhhhcC-------ceEEEeccCc
Q psy6098 211 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQP---KGVLLYGPPGTGKTLLARAVAHHTE-------CTFIRVSGSE 280 (378)
Q Consensus 211 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~ll~Gp~G~GKTtl~~~ia~~~~-------~~~i~~~~~~ 280 (378)
.+++|++++|++|.+++.+ +..+......++.++ .+++|+||||||||++|+++|..+. .+++.++..+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 3799999999999999877 444555666776553 3589999999999999999998753 2488889889
Q ss_pred ccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCC
Q psy6098 281 LVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSR 349 (378)
Q Consensus 281 l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r 349 (378)
+...|+|+++..+.+.|..+ .++||||||+|++.+.+
T Consensus 102 l~~~~~g~~~~~~~~~l~~a--------------------------------~ggVLfIDE~~~l~~~~ 138 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA--------------------------------MGGVLFIDEAYYLYKPD 138 (287)
T ss_pred HHHHHhccchHHHHHHHHHc--------------------------------cCCEEEEEccchhccCC
Confidence 98889998888788887766 56899999999997654
No 153
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2e-15 Score=138.00 Aligned_cols=129 Identities=19% Similarity=0.252 Sum_probs=94.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccc-------------c---cccchh-----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELV-------------Q---KFIGEG-----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~-------------~---~~~~~~-----~~~v~ 294 (378)
-++.+.+|+.++|.||||+|||||+++|+|...+. .|.+++.++. . .|+.+. ..++.
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 100 (242)
T PRK11124 21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQ 100 (242)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHH
Confidence 35788899999999999999999999999998765 7777765431 0 011111 01222
Q ss_pred HHHHH------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCC
Q psy6098 295 ELFVM------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGS 354 (378)
Q Consensus 295 ~~~~~------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~ 354 (378)
+.+.. ..++.+.+.......+..+|+|++|++.++++ ..|++++||| |++
T Consensus 101 e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDE----------Pt~ 170 (242)
T PRK11124 101 QNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDE----------PTA 170 (242)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------CCC
Confidence 22211 01223334444556678999999999999998 8999999999 999
Q ss_pred CCChHHHHHHHHHHHhccCCCC
Q psy6098 355 GGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 355 ~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
++|+..+..+.++|.++...+.
T Consensus 171 ~LD~~~~~~l~~~l~~~~~~~~ 192 (242)
T PRK11124 171 ALDPEITAQIVSIIRELAETGI 192 (242)
T ss_pred cCCHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999998865444
No 154
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=2.3e-15 Score=127.86 Aligned_cols=124 Identities=23% Similarity=0.202 Sum_probs=94.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcc----------cccccchhHHHHHHHHHHh-----
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL----------VQKFIGEGSRMVRELFVMA----- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l----------~~~~~~~~~~~v~~~~~~a----- 300 (378)
-++++.+|+.+++.||+|||||||++.+||+..+. .|.+++..+ +++.--.++.++.++...+
T Consensus 24 vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~G 103 (259)
T COG4525 24 VSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRG 103 (259)
T ss_pred cceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcC
Confidence 35678999999999999999999999999999876 777776544 2221112223333322221
Q ss_pred ------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHH
Q psy6098 301 ------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLE 366 (378)
Q Consensus 301 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~ 366 (378)
.+..+++.......+..+|+|++|++.++|+ ..|+.++||| |++++|.-.++.+-+
T Consensus 104 i~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDE----------PfgAlDa~tRe~mQe 173 (259)
T COG4525 104 IEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDE----------PFGALDALTREQMQE 173 (259)
T ss_pred CCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecC----------chhhHHHHHHHHHHH
Confidence 2444566777888999999999999999998 8999999999 999999988888777
Q ss_pred HHHhc
Q psy6098 367 LLNQL 371 (378)
Q Consensus 367 lL~~l 371 (378)
+|-.+
T Consensus 174 lLldl 178 (259)
T COG4525 174 LLLDL 178 (259)
T ss_pred HHHHH
Confidence 76543
No 155
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=1.5e-15 Score=138.48 Aligned_cols=126 Identities=23% Similarity=0.268 Sum_probs=92.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----c---ccchh-----HHHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----K---FIGEG-----SRMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----~---~~~~~-----~~~v~~~~~~--- 299 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 21 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 100 (239)
T cd03296 21 VSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLR 100 (239)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhh
Confidence 36788999999999999999999999999998765 67776644311 0 11110 0122222111
Q ss_pred ------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 300 ------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 300 ------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
..++.+.+.......+..+|.|++|+++++++ ..|.||+||| |++++|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE----------P~~~LD~~ 170 (239)
T cd03296 101 VKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE----------PFGALDAK 170 (239)
T ss_pred hccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------CcccCCHH
Confidence 11233334444556678899999999999998 8999999999 99999999
Q ss_pred HHHHHHHHHHhccC
Q psy6098 360 VQRTMLELLNQLDG 373 (378)
Q Consensus 360 ~~~~~~~lL~~l~~ 373 (378)
.+..+.++|.++..
T Consensus 171 ~~~~l~~~l~~~~~ 184 (239)
T cd03296 171 VRKELRRWLRRLHD 184 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998853
No 156
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.59 E-value=1.9e-14 Score=143.59 Aligned_cols=125 Identities=18% Similarity=0.251 Sum_probs=89.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccch------hHHHHHHHHH-----------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGE------GSRMVRELFV----------- 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~------~~~~v~~~~~----------- 298 (378)
-+|.+.+|..++|+||||+|||||+|.|+|.+++. .|.+... +.-.|..+ ...++.+.+.
T Consensus 341 ~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~ 419 (530)
T COG0488 341 LSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEV 419 (530)
T ss_pred ceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-eEEEEEEehhhhcCccCcHHHHHHhhCccccHHHH
Confidence 46789999999999999999999999999888765 4443222 21111111 1111111111
Q ss_pred Hhhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 299 MASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 299 ~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
...+.++.+. ......+..||+|++.|+..++. ..|.||+||| ||+++|.++...+.+.|...+|
T Consensus 420 r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDE----------PTNhLDi~s~~aLe~aL~~f~G 487 (530)
T COG0488 420 RAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDE----------PTNHLDIESLEALEEALLDFEG 487 (530)
T ss_pred HHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcC----------CCccCCHHHHHHHHHHHHhCCC
Confidence 1123333332 34467788999999999988876 8999999999 9999999999999999988776
No 157
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.59 E-value=1.6e-15 Score=138.71 Aligned_cols=125 Identities=22% Similarity=0.316 Sum_probs=92.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------c---ccchh-----HHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------K---FIGEG-----SRMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~---~~~~~-----~~~v~~~~ 297 (378)
-++.+.+|+.++|.||||||||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+
T Consensus 21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 100 (243)
T TIGR02315 21 INLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENV 100 (243)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHH
Confidence 46788999999999999999999999999998765 77777654321 0 11110 01222222
Q ss_pred HH-------------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 298 VM-------------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 298 ~~-------------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
.. ..+..+.+.......+..+|+|++|+++++++ ..|+||+|||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE--------- 171 (243)
T TIGR02315 101 LHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADE--------- 171 (243)
T ss_pred hhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---------
Confidence 11 01222333444455677899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcc
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
|++++|+..+..+.++|.++.
T Consensus 172 -Pt~~LD~~~~~~l~~~l~~~~ 192 (243)
T TIGR02315 172 -PIASLDPKTSKQVMDYLKRIN 192 (243)
T ss_pred -CcccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999874
No 158
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.59 E-value=5e-16 Score=134.54 Aligned_cols=120 Identities=22% Similarity=0.224 Sum_probs=86.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccchhHHHHHHHHHHhhhhhhhhc--cCchh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFA--HHPLL 313 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~--~~~~~ 313 (378)
.++.+.+|+.++|.||||+|||||+++|+|...+. .|.+++.++.... ....+.. +..+... .....
T Consensus 21 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~~~~~-----i~~~~q~~~~~~~t 91 (173)
T cd03246 21 VSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD----PNELGDH-----VGYLPQDDELFSGS 91 (173)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCC----HHHHHhh-----eEEECCCCccccCc
Confidence 35788899999999999999999999999998875 7888876553210 0111110 0000000 00011
Q ss_pred hhhH-hhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 314 FWSL-LTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 314 ~~~~-~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
..+. +|.|++|++.++++ .+|+++++|| |++++|+..+..+.++|.++...+.
T Consensus 92 v~~~lLS~G~~qrv~la~al~~~p~~lllDE----------Pt~~LD~~~~~~l~~~l~~~~~~~~ 147 (173)
T cd03246 92 IAENILSGGQRQRLGLARALYGNPRILVLDE----------PNSHLDVEGERALNQAIAALKAAGA 147 (173)
T ss_pred HHHHCcCHHHHHHHHHHHHHhcCCCEEEEEC----------CccccCHHHHHHHHHHHHHHHhCCC
Confidence 1111 89999999999998 8999999999 9999999999999999998865443
No 159
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.59 E-value=4.9e-16 Score=133.24 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=85.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFW 315 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~ 315 (378)
.++.+.+|+.++|.||||+|||||+++|+|...+. .|.+++.++.... .. +.... .+. ..
T Consensus 19 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~----~~---~~~~~----~i~-------~~ 80 (163)
T cd03216 19 VSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS----PR---DARRA----GIA-------MV 80 (163)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCC----HH---HHHhc----CeE-------EE
Confidence 36789999999999999999999999999998875 7888776543210 00 00000 000 11
Q ss_pred hHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 316 SLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 316 ~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
..+|.|++|++.++++ .+|++|++|| |++++|+..++.+.++|+++...+.
T Consensus 81 ~qLS~G~~qrl~laral~~~p~illlDE----------P~~~LD~~~~~~l~~~l~~~~~~~~ 133 (163)
T cd03216 81 YQLSVGERQMVEIARALARNARLLILDE----------PTAALTPAEVERLFKVIRRLRAQGV 133 (163)
T ss_pred EecCHHHHHHHHHHHHHhcCCCEEEEEC----------CCcCCCHHHHHHHHHHHHHHHHCCC
Confidence 1299999999999998 8999999999 9999999999999999998854443
No 160
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.59 E-value=2.5e-15 Score=134.58 Aligned_cols=129 Identities=23% Similarity=0.299 Sum_probs=93.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----cccch-------hHHHHHHHHHH----
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----KFIGE-------GSRMVRELFVM---- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----~~~~~-------~~~~v~~~~~~---- 299 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.++ .|.+++.++.. .|+.+ ...++.+.+..
T Consensus 18 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~ 97 (213)
T cd03235 18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYG 97 (213)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhcccc
Confidence 46788999999999999999999999999998765 77777654310 01110 00122222211
Q ss_pred -----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 300 -----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 300 -----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
..++.+.+.......+..+|+|++|++.++++ ..|.||+||| |++++|+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE----------Pt~~LD~~~ 167 (213)
T cd03235 98 HKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDE----------PFAGVDPKT 167 (213)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC----------CcccCCHHH
Confidence 01222233334455677899999999999998 8999999999 999999999
Q ss_pred HHHHHHHHHhccCCCC
Q psy6098 361 QRTMLELLNQLDGFEA 376 (378)
Q Consensus 361 ~~~~~~lL~~l~~~~~ 376 (378)
+..+.++|.++...+.
T Consensus 168 ~~~l~~~l~~~~~~~~ 183 (213)
T cd03235 168 QEDIYELLRELRREGM 183 (213)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999998754443
No 161
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.59 E-value=1.8e-15 Score=145.20 Aligned_cols=126 Identities=27% Similarity=0.341 Sum_probs=95.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----c---ccch-----hHHHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----K---FIGE-----GSRMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----~---~~~~-----~~~~v~~~~~~--- 299 (378)
-++.+.+|+.++|.||||||||||+|+|+|...++ .|.+++.++.. . |+.+ ...++.+.+..
T Consensus 21 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~ 100 (353)
T PRK10851 21 ISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLT 100 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhh
Confidence 46788899999999999999999999999998876 78887765421 0 1111 01122222211
Q ss_pred ------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 300 ------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 300 ------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
..++.+.+.......+..+|+|++|+++++|+ ..|+||+||| |++++|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDE----------P~s~LD~~ 170 (353)
T PRK10851 101 VLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDE----------PFGALDAQ 170 (353)
T ss_pred hcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCccCCHH
Confidence 12333445556677788999999999999999 8999999999 99999999
Q ss_pred HHHHHHHHHHhccC
Q psy6098 360 VQRTMLELLNQLDG 373 (378)
Q Consensus 360 ~~~~~~~lL~~l~~ 373 (378)
.+..+.++|.++..
T Consensus 171 ~r~~l~~~L~~l~~ 184 (353)
T PRK10851 171 VRKELRRWLRQLHE 184 (353)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 162
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2.1e-15 Score=141.23 Aligned_cols=130 Identities=19% Similarity=0.164 Sum_probs=96.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------------cccchhH------HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------------KFIGEGS------RMVRE 295 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------------~~~~~~~------~~v~~ 295 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+.. .++.+
T Consensus 26 vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e 105 (287)
T PRK13641 26 ISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLK 105 (287)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHH
Confidence 46789999999999999999999999999998876 78887754321 1222211 13333
Q ss_pred HHHHh-----------------hhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCC
Q psy6098 296 LFVMA-----------------SLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSG 355 (378)
Q Consensus 296 ~~~~a-----------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~ 355 (378)
.+... .+..+.+. ......+..+|.|++|+++++++ ..|.+|+||| |+++
T Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDE----------Pt~g 175 (287)
T PRK13641 106 DVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDE----------PAAG 175 (287)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC----------CCCC
Confidence 33211 12222333 34566778999999999999998 8999999999 9999
Q ss_pred CChHHHHHHHHHHHhccCCCCC
Q psy6098 356 GDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 356 ~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
+|+..+..+.++|.++...+.|
T Consensus 176 LD~~~~~~l~~~l~~l~~~g~t 197 (287)
T PRK13641 176 LDPEGRKEMMQLFKDYQKAGHT 197 (287)
T ss_pred CCHHHHHHHHHHHHHHHhCCCE
Confidence 9999999999999988644443
No 163
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.59 E-value=2.6e-15 Score=137.92 Aligned_cols=129 Identities=26% Similarity=0.285 Sum_probs=93.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc---------------c---ccchh-----HHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ---------------K---FIGEG-----SRM 292 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~---------------~---~~~~~-----~~~ 292 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..+
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (250)
T PRK11264 22 IDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRT 101 (250)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCC
Confidence 46788999999999999999999999999998765 66666543310 0 11110 112
Q ss_pred HHHHHHH------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCC
Q psy6098 293 VRELFVM------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIES 352 (378)
Q Consensus 293 v~~~~~~------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~ 352 (378)
+.+.+.. ..+..+.+.......+..+|+|++|+++++++ ..|+||+||| |
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDE----------P 171 (250)
T PRK11264 102 VLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDE----------P 171 (250)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeC----------C
Confidence 2222211 01222333444556778999999999999998 8999999999 9
Q ss_pred CCCCChHHHHHHHHHHHhccCCCC
Q psy6098 353 GSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 353 ~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
++++|+..+..+.++|.++...+.
T Consensus 172 t~~LD~~~~~~l~~~l~~~~~~~~ 195 (250)
T PRK11264 172 TSALDPELVGEVLNTIRQLAQEKR 195 (250)
T ss_pred CccCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999998864443
No 164
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.59 E-value=2.4e-15 Score=134.18 Aligned_cols=129 Identities=22% Similarity=0.282 Sum_probs=92.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------cccch-----hHHHHHHHHHH----
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------KFIGE-----GSRMVRELFVM---- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~~~~~-----~~~~v~~~~~~---- 299 (378)
.+|.+.+|+.++|.||||+|||||+++|+|...+. .|.+++.++.. .|+.+ ...++.+.+..
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~ 100 (207)
T PRK13539 21 LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAF 100 (207)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHh
Confidence 46788999999999999999999999999998765 67777644210 01110 01122222111
Q ss_pred ---------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHH
Q psy6098 300 ---------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELL 368 (378)
Q Consensus 300 ---------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL 368 (378)
..++.+.+.......+..+|.|++|++.++++ .+|.++++|| |++++|+..+..+.++|
T Consensus 101 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE----------Pt~~LD~~~~~~l~~~l 170 (207)
T PRK13539 101 LGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDE----------PTAALDAAAVALFAELI 170 (207)
T ss_pred cCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC----------CcccCCHHHHHHHHHHH
Confidence 01222333334455677899999999999998 8999999999 99999999999999999
Q ss_pred HhccCCCC
Q psy6098 369 NQLDGFEA 376 (378)
Q Consensus 369 ~~l~~~~~ 376 (378)
.++...+.
T Consensus 171 ~~~~~~~~ 178 (207)
T PRK13539 171 RAHLAQGG 178 (207)
T ss_pred HHHHHCCC
Confidence 98754443
No 165
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=1.9e-15 Score=137.96 Aligned_cols=125 Identities=24% Similarity=0.320 Sum_probs=92.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------c---ccch-----hHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------K---FIGE-----GSRMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~---~~~~-----~~~~v~~~~ 297 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+ ...++.+.+
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 99 (241)
T cd03256 20 VSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENV 99 (241)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHH
Confidence 46789999999999999999999999999998765 77777654321 0 1111 001222222
Q ss_pred HH-------------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 298 VM-------------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 298 ~~-------------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
.. ..+..+.+.......+..+|+|++|++.++++ ..|+||+|||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE--------- 170 (241)
T cd03256 100 LSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADE--------- 170 (241)
T ss_pred HhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---------
Confidence 11 01222333444455677899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcc
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
|++++|+..+..+.++|.++.
T Consensus 171 -Pt~~LD~~~~~~l~~~l~~~~ 191 (241)
T cd03256 171 -PVASLDPASSRQVMDLLKRIN 191 (241)
T ss_pred -ccccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999874
No 166
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.59 E-value=2.7e-15 Score=131.02 Aligned_cols=114 Identities=22% Similarity=0.266 Sum_probs=86.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc-----------ccchh--------HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK-----------FIGEG--------SRMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~-----------~~~~~--------~~~v~~~ 296 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++... |+.+. ...+.+.
T Consensus 19 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~ 98 (182)
T cd03215 19 VSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAEN 98 (182)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHH
Confidence 46788999999999999999999999999998875 788887655321 11100 0012221
Q ss_pred HHHhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCC
Q psy6098 297 FVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGF 374 (378)
Q Consensus 297 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~ 374 (378)
+... ..+|.|++|+++++++ ..|+||++|| |++++|+..+..+.++|.++...
T Consensus 99 l~~~---------------~~LS~G~~qrl~la~al~~~p~llllDE----------P~~~LD~~~~~~l~~~l~~~~~~ 153 (182)
T cd03215 99 IALS---------------SLLSGGNQQKVVLARWLARDPRVLILDE----------PTRGVDVGAKAEIYRLIRELADA 153 (182)
T ss_pred HHHH---------------hhcCHHHHHHHHHHHHHccCCCEEEECC----------CCcCCCHHHHHHHHHHHHHHHHC
Confidence 1111 1199999999999998 8999999999 99999999999999999988543
Q ss_pred CC
Q psy6098 375 EA 376 (378)
Q Consensus 375 ~~ 376 (378)
+.
T Consensus 154 ~~ 155 (182)
T cd03215 154 GK 155 (182)
T ss_pred CC
Confidence 43
No 167
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.58 E-value=2.3e-15 Score=137.35 Aligned_cols=129 Identities=24% Similarity=0.289 Sum_probs=94.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc------------cccchh-----HHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ------------KFIGEG-----SRMVRELFV 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~------------~~~~~~-----~~~v~~~~~ 298 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+. ..++.+.+.
T Consensus 20 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 99 (240)
T PRK09493 20 IDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVM 99 (240)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHH
Confidence 36788999999999999999999999999998765 77777754421 011110 012222221
Q ss_pred H------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 299 M------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 299 ~------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
. ..++.+.+.......+..+|.|++|+++++++ ..|+|++||| |++++|+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE----------P~~~LD~ 169 (240)
T PRK09493 100 FGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDE----------PTSALDP 169 (240)
T ss_pred hHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcC----------CcccCCH
Confidence 1 11223333444456677899999999999998 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccCCCC
Q psy6098 359 EVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~~~ 376 (378)
..+..+.++|.++...+.
T Consensus 170 ~~~~~l~~~l~~~~~~~~ 187 (240)
T PRK09493 170 ELRHEVLKVMQDLAEEGM 187 (240)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999998854443
No 168
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=2.3e-15 Score=137.55 Aligned_cols=126 Identities=21% Similarity=0.249 Sum_probs=92.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------c---ccchh-----HHHHHHHHHH-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------K---FIGEG-----SRMVRELFVM- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~---~~~~~-----~~~v~~~~~~- 299 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 20 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 99 (242)
T cd03295 20 LNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALV 99 (242)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHH
Confidence 46788999999999999999999999999998765 77777654321 0 11110 0122222211
Q ss_pred ----------------hhhhhhhhcc--CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 300 ----------------ASLKKLAFAH--HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 300 ----------------a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
..+..+.+.. .....+..+|+|++|+++++++ ..|++|+||| |++++|+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE----------Pt~~LD~~ 169 (242)
T cd03295 100 PKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDE----------PFGALDPI 169 (242)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecC----------CcccCCHH
Confidence 1123333332 4456678999999999999998 8999999999 99999999
Q ss_pred HHHHHHHHHHhccC
Q psy6098 360 VQRTMLELLNQLDG 373 (378)
Q Consensus 360 ~~~~~~~lL~~l~~ 373 (378)
.+..+.++|.++..
T Consensus 170 ~~~~l~~~L~~~~~ 183 (242)
T cd03295 170 TRDQLQEEFKRLQQ 183 (242)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998853
No 169
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=3.1e-15 Score=133.85 Aligned_cols=125 Identities=26% Similarity=0.319 Sum_probs=91.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc------c---ccchh-----HHHHHHHHHH--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ------K---FIGEG-----SRMVRELFVM-- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~------~---~~~~~-----~~~v~~~~~~-- 299 (378)
.+|.+.+| .++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 19 vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 97 (211)
T cd03264 19 VSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIA 97 (211)
T ss_pred eeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHH
Confidence 35778888 99999999999999999999998765 77777754321 0 11110 0122222111
Q ss_pred ---------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 300 ---------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 300 ---------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
..++.+.+.......+..+|.|++|+++++++ ..|.++++|| |++++|+..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE----------Pt~~LD~~~~~ 167 (211)
T cd03264 98 WLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE----------PTAGLDPEERI 167 (211)
T ss_pred HHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------CcccCCHHHHH
Confidence 11222333444456778999999999999998 8999999999 99999999999
Q ss_pred HHHHHHHhccC
Q psy6098 363 TMLELLNQLDG 373 (378)
Q Consensus 363 ~~~~lL~~l~~ 373 (378)
.+.++|.++..
T Consensus 168 ~l~~~l~~~~~ 178 (211)
T cd03264 168 RFRNLLSELGE 178 (211)
T ss_pred HHHHHHHHHhC
Confidence 99999998854
No 170
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.58 E-value=2.4e-15 Score=136.13 Aligned_cols=125 Identities=22% Similarity=0.259 Sum_probs=91.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----------c---ccchh-----HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----------K---FIGEG-----SRMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----------~---~~~~~-----~~~v~~~ 296 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.
T Consensus 29 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~ 108 (228)
T PRK10584 29 VELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALEN 108 (228)
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHH
Confidence 46788999999999999999999999999998765 67776643311 0 11110 0112222
Q ss_pred HHH-----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 297 FVM-----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 297 ~~~-----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+.. ..++.+.+.......+..+|+|++|++.++++ ..|++++||| |++++|
T Consensus 109 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDE----------Pt~~LD 178 (228)
T PRK10584 109 VELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADE----------PTGNLD 178 (228)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCCCCC
Confidence 111 11233334444556778999999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhcc
Q psy6098 358 SEVQRTMLELLNQLD 372 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~ 372 (378)
+..+..+.++|.++.
T Consensus 179 ~~~~~~l~~~l~~~~ 193 (228)
T PRK10584 179 RQTGDKIADLLFSLN 193 (228)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998874
No 171
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.58 E-value=4.3e-15 Score=138.53 Aligned_cols=105 Identities=27% Similarity=0.393 Sum_probs=87.8
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhhhcCCCC---CcceeEeCCCCCchHHHHHHHhhhcC-------ceEEEeccCcc
Q psy6098 212 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQ---PKGVLLYGPPGTGKTLLARAVAHHTE-------CTFIRVSGSEL 281 (378)
Q Consensus 212 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~ll~Gp~G~GKTtl~~~ia~~~~-------~~~i~~~~~~l 281 (378)
+++|++++|++|.+++.+ ...++.....++.+ +.+++|+||||||||++|+++|..+. .+++.++..++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999999887 55666777777764 44799999999999999999988764 25888888888
Q ss_pred cccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCC
Q psy6098 282 VQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSR 349 (378)
Q Consensus 282 ~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r 349 (378)
...|.|++...+.+.|+.+ .++||||||||.+.+.+
T Consensus 102 ~~~~~g~~~~~~~~~~~~a--------------------------------~~gvL~iDEi~~L~~~~ 137 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA--------------------------------MGGVLFIDEAYYLYRPD 137 (284)
T ss_pred hHhhcccchHHHHHHHHHc--------------------------------cCcEEEEechhhhccCC
Confidence 8889998888888888776 66899999999997544
No 172
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=2.4e-15 Score=145.31 Aligned_cols=125 Identities=19% Similarity=0.164 Sum_probs=93.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----c---ccc-----hhHHHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----K---FIG-----EGSRMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----~---~~~-----~~~~~v~~~~~~--- 299 (378)
.++.+.+|+.++|.||||||||||+|+|||+..++ .|.+++.++.. . |+. ....++.+++..
T Consensus 38 vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~ 117 (377)
T PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLK 117 (377)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 46788999999999999999999999999999876 78887765421 0 111 111122222221
Q ss_pred --------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 300 --------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 300 --------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
..++.+.+.......+..||+|++|+++++|+ ..|.||+||| |++++|...+..
T Consensus 118 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDE----------P~s~LD~~~r~~ 187 (377)
T PRK11607 118 QDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE----------PMGALDKKLRDR 187 (377)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CcccCCHHHHHH
Confidence 11333345566677888999999999999999 8999999999 999999999988
Q ss_pred HHHHHHhcc
Q psy6098 364 MLELLNQLD 372 (378)
Q Consensus 364 ~~~lL~~l~ 372 (378)
+.+.|.++.
T Consensus 188 l~~~l~~l~ 196 (377)
T PRK11607 188 MQLEVVDIL 196 (377)
T ss_pred HHHHHHHHH
Confidence 887776653
No 173
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.58 E-value=2.9e-15 Score=125.90 Aligned_cols=128 Identities=22% Similarity=0.163 Sum_probs=97.2
Q ss_pred hhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccch-------------hHHHHHHHHH---
Q psy6098 237 FDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGE-------------GSRMVRELFV--- 298 (378)
Q Consensus 237 ~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~-------------~~~~v~~~~~--- 298 (378)
.-...+..++.+++.||+|+|||||++.|||...|. .|.+++.+.......+ ..-+|.+++.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl 96 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGL 96 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccC
Confidence 345678899999999999999999999999999876 8888887662211100 0011111111
Q ss_pred --------------HhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 299 --------------MASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 299 --------------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
.....++++..+....+..+|+|++||++.+|+ ...+|++||| |++++||..+.
T Consensus 97 ~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDE----------PFsALdP~LR~ 166 (231)
T COG3840 97 SPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDE----------PFSALDPALRA 166 (231)
T ss_pred CcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecC----------chhhcCHHHHH
Confidence 112455667788888899999999999999998 5555999999 99999999999
Q ss_pred HHHHHHHhccCC
Q psy6098 363 TMLELLNQLDGF 374 (378)
Q Consensus 363 ~~~~lL~~l~~~ 374 (378)
.+..++.++...
T Consensus 167 eMl~Lv~~l~~E 178 (231)
T COG3840 167 EMLALVSQLCDE 178 (231)
T ss_pred HHHHHHHHHHHh
Confidence 999998877543
No 174
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=3.1e-15 Score=139.16 Aligned_cols=129 Identities=21% Similarity=0.184 Sum_probs=95.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------cccchhH------HHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------KFIGEGS------RMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~~~~~~~------~~v~~~~~~ 299 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+.. .++.+.+..
T Consensus 24 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~ 103 (274)
T PRK13647 24 LSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAF 103 (274)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHh
Confidence 46789999999999999999999999999998875 78887754421 0111211 122222221
Q ss_pred h-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 300 A-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 300 a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
. .+..+.+.......+..+|+|++|++.++++ ..|++|+||| |++++|+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDE----------Pt~~LD~~~ 173 (274)
T PRK13647 104 GPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDE----------PMAYLDPRG 173 (274)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC----------CCcCCCHHH
Confidence 1 1222334445566778999999999999998 9999999999 999999999
Q ss_pred HHHHHHHHHhccCCCC
Q psy6098 361 QRTMLELLNQLDGFEA 376 (378)
Q Consensus 361 ~~~~~~lL~~l~~~~~ 376 (378)
+..+.++|.++...+.
T Consensus 174 ~~~l~~~l~~~~~~g~ 189 (274)
T PRK13647 174 QETLMEILDRLHNQGK 189 (274)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 9999999998854343
No 175
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.58 E-value=3.1e-15 Score=134.94 Aligned_cols=128 Identities=18% Similarity=0.160 Sum_probs=93.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc------ccch-----hHHHHHHHHH------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK------FIGE-----GSRMVRELFV------ 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~------~~~~-----~~~~v~~~~~------ 298 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++..+... |+.+ ...++.+.+.
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~ 98 (223)
T TIGR03740 19 ISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLL 98 (223)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHc
Confidence 46778999999999999999999999999998765 666666433100 1100 0012222211
Q ss_pred -------HhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHH
Q psy6098 299 -------MASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 369 (378)
Q Consensus 299 -------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~ 369 (378)
...++.+.+.......+..+|.|++|++.++++ ..|+|+++|| |++++|+..+..+.++|.
T Consensus 99 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDE----------P~~~LD~~~~~~l~~~L~ 168 (223)
T TIGR03740 99 GLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDE----------PTNGLDPIGIQELRELIR 168 (223)
T ss_pred CCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC----------CccCCCHHHHHHHHHHHH
Confidence 111333444555566778999999999999998 8999999999 999999999999999999
Q ss_pred hccCCC
Q psy6098 370 QLDGFE 375 (378)
Q Consensus 370 ~l~~~~ 375 (378)
++...+
T Consensus 169 ~~~~~~ 174 (223)
T TIGR03740 169 SFPEQG 174 (223)
T ss_pred HHHHCC
Confidence 885444
No 176
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.58 E-value=3.1e-15 Score=135.62 Aligned_cols=126 Identities=16% Similarity=0.236 Sum_probs=92.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------c---ccchh-----HHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------K---FIGEG-----SRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~---~~~~~-----~~~v~~~~~~ 299 (378)
.+|.+.+|+.++|+||||||||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 98 (230)
T TIGR03410 19 VSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLT 98 (230)
T ss_pred eeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHH
Confidence 46788999999999999999999999999998865 77777644311 0 11110 1122222221
Q ss_pred h--------------hhhhhh-hccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 300 A--------------SLKKLA-FAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 300 a--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
+ .+..+. ........+..+|+|++|+++++++ ..|+|+++|| |++++|+..+.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDE----------Pt~~LD~~~~~ 168 (230)
T TIGR03410 99 GLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE----------PTEGIQPSIIK 168 (230)
T ss_pred HHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC----------CcccCCHHHHH
Confidence 1 112222 2334566777899999999999998 8999999999 99999999999
Q ss_pred HHHHHHHhccC
Q psy6098 363 TMLELLNQLDG 373 (378)
Q Consensus 363 ~~~~lL~~l~~ 373 (378)
.+.++|.++..
T Consensus 169 ~l~~~l~~~~~ 179 (230)
T TIGR03410 169 DIGRVIRRLRA 179 (230)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 177
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.58 E-value=6.5e-15 Score=136.05 Aligned_cols=126 Identities=25% Similarity=0.347 Sum_probs=93.1
Q ss_pred cccccCcHHHHHHHHHHHhccccCchhhhhcCCCCC---cceeEeCCCCCchHHHHHHHhhhcC-------ceEEEeccC
Q psy6098 210 YEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQP---KGVLLYGPPGTGKTLLARAVAHHTE-------CTFIRVSGS 279 (378)
Q Consensus 210 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~ll~Gp~G~GKTtl~~~ia~~~~-------~~~i~~~~~ 279 (378)
+++++|++++|++|++.+.+.... ......|+.++ .+++|+|||||||||+++++|+.+. ..++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 468999999999999998875333 22233455433 3689999999999999999998642 248888999
Q ss_pred cccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 280 ELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 280 ~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
++...|+|++...+.+.|..+ .++||||||||.|.... .+..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a--------------------------------~~~VL~IDE~~~L~~~~------~~~~ 125 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKA--------------------------------LGGVLFIDEAYSLARGG------EKDF 125 (261)
T ss_pred HhhhhhccchHHHHHHHHHhc--------------------------------cCCEEEEechhhhccCC------ccch
Confidence 999999999998888888776 56799999999986421 1122
Q ss_pred HHHHHHHHHHhccCC
Q psy6098 360 VQRTMLELLNQLDGF 374 (378)
Q Consensus 360 ~~~~~~~lL~~l~~~ 374 (378)
....+..+++.|+..
T Consensus 126 ~~~~i~~Ll~~~e~~ 140 (261)
T TIGR02881 126 GKEAIDTLVKGMEDN 140 (261)
T ss_pred HHHHHHHHHHHHhcc
Confidence 334555666666543
No 178
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.58 E-value=3.6e-15 Score=133.73 Aligned_cols=129 Identities=16% Similarity=0.139 Sum_probs=94.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------cccchh-----HHHHHHHHHH----
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------KFIGEG-----SRMVRELFVM---- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~~~~~~-----~~~v~~~~~~---- 299 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++..+.. .|+.+. ...+.+.+..
T Consensus 30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 109 (214)
T PRK13543 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGL 109 (214)
T ss_pred ceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHh
Confidence 46789999999999999999999999999998765 67776643311 011110 0022222111
Q ss_pred ----------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHH
Q psy6098 300 ----------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL 367 (378)
Q Consensus 300 ----------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~l 367 (378)
..+..+.+.......+..+|.|++|+++++++ ..|+|++||| |++++|+..+..+.++
T Consensus 110 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE----------Pt~~LD~~~~~~l~~~ 179 (214)
T PRK13543 110 HGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE----------PYANLDLEGITLVNRM 179 (214)
T ss_pred cCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CcccCCHHHHHHHHHH
Confidence 11333344455567778999999999999998 8999999999 9999999999999999
Q ss_pred HHhccCCCC
Q psy6098 368 LNQLDGFEA 376 (378)
Q Consensus 368 L~~l~~~~~ 376 (378)
|.++...+.
T Consensus 180 l~~~~~~~~ 188 (214)
T PRK13543 180 ISAHLRGGG 188 (214)
T ss_pred HHHHHhCCC
Confidence 988754443
No 179
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=2.1e-15 Score=139.93 Aligned_cols=125 Identities=23% Similarity=0.281 Sum_probs=92.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----------c---ccchh-----HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----------K---FIGEG-----SRMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----------~---~~~~~-----~~~v~~~ 296 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.
T Consensus 43 is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 122 (269)
T cd03294 43 VSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLEN 122 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHH
Confidence 46788999999999999999999999999998765 67776654321 0 11110 1122222
Q ss_pred HHHh-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 297 FVMA-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 297 ~~~a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+... .++.+.+.......+..+|.|++|+++++++ ..|+||+||| |++++|
T Consensus 123 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDE----------Pt~~LD 192 (269)
T cd03294 123 VAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDE----------AFSALD 192 (269)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC----------CCccCC
Confidence 2211 1233334444566677899999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhcc
Q psy6098 358 SEVQRTMLELLNQLD 372 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~ 372 (378)
+..+..+.++|.++.
T Consensus 193 ~~~~~~l~~~l~~~~ 207 (269)
T cd03294 193 PLIRREMQDELLRLQ 207 (269)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998874
No 180
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=3e-15 Score=139.10 Aligned_cols=129 Identities=14% Similarity=0.102 Sum_probs=93.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccc--c-------c---ccchhH------HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELV--Q-------K---FIGEGS------RMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~--~-------~---~~~~~~------~~v~~~~ 297 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++. . . |+.+.. ..+.+.+
T Consensus 20 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l 99 (271)
T PRK13638 20 LNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDI 99 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHH
Confidence 46788999999999999999999999999998875 7777775541 0 0 111111 1122221
Q ss_pred HHh-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 298 VMA-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 298 ~~a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
... .+..+.+.......+..+|+|++|++.++++ ..|+||+||| |++++|+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDE----------Pt~~LD~ 169 (271)
T PRK13638 100 AFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDE----------PTAGLDP 169 (271)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC----------CcccCCH
Confidence 110 1222233334455677899999999999998 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccCCCC
Q psy6098 359 EVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~~~ 376 (378)
..+..+.++|.++...+.
T Consensus 170 ~~~~~l~~~l~~~~~~g~ 187 (271)
T PRK13638 170 AGRTQMIAIIRRIVAQGN 187 (271)
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 999999999998854443
No 181
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=2.8e-15 Score=136.94 Aligned_cols=129 Identities=18% Similarity=0.162 Sum_probs=93.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------c---ccchh-----HHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------K---FIGEG-----SRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~---~~~~~-----~~~v~~~~~~ 299 (378)
.+|.+.+|+.++|+||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 22 ~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 101 (241)
T PRK10895 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMA 101 (241)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhh
Confidence 46788999999999999999999999999998765 77777654311 0 11110 0122222211
Q ss_pred h------------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 300 A------------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 300 a------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
. .++.+.+.......+..+|.|++|++.++++ ..|++|++|| |++++|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE----------Pt~~LD~~ 171 (241)
T PRK10895 102 VLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDE----------PFAGVDPI 171 (241)
T ss_pred hhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------CcccCCHH
Confidence 0 1222233344456677899999999999998 8999999999 99999999
Q ss_pred HHHHHHHHHHhccCCCC
Q psy6098 360 VQRTMLELLNQLDGFEA 376 (378)
Q Consensus 360 ~~~~~~~lL~~l~~~~~ 376 (378)
.+..+.++|.++...+.
T Consensus 172 ~~~~l~~~l~~~~~~g~ 188 (241)
T PRK10895 172 SVIDIKRIIEHLRDSGL 188 (241)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999988765444
No 182
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=2.3e-15 Score=134.63 Aligned_cols=125 Identities=19% Similarity=0.218 Sum_probs=92.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------cccchh-----HHHHHHHHHHh--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------KFIGEG-----SRMVRELFVMA-- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~~~~~~-----~~~v~~~~~~a-- 300 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+. ..++.+.+...
T Consensus 17 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 96 (211)
T cd03298 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLS 96 (211)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccc
Confidence 47889999999999999999999999999998765 67777654311 011110 11222222111
Q ss_pred ---------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 301 ---------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 301 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
.+..+.+.......+..+|.|++|+++++++ ..|++++||| |++++|+..+..
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDE----------P~~~LD~~~~~~ 166 (211)
T cd03298 97 PGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDE----------PFAALDPALRAE 166 (211)
T ss_pred cccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC----------CcccCCHHHHHH
Confidence 1222233344455677899999999999998 8999999999 999999999999
Q ss_pred HHHHHHhcc
Q psy6098 364 MLELLNQLD 372 (378)
Q Consensus 364 ~~~lL~~l~ 372 (378)
+.++|.++.
T Consensus 167 l~~~l~~~~ 175 (211)
T cd03298 167 MLDLVLDLH 175 (211)
T ss_pred HHHHHHHHH
Confidence 999999874
No 183
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.58 E-value=4.2e-15 Score=135.90 Aligned_cols=124 Identities=18% Similarity=0.108 Sum_probs=90.0
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcc---cccccchhHHHHHHHHHH-------------h
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL---VQKFIGEGSRMVRELFVM-------------A 300 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l---~~~~~~~~~~~v~~~~~~-------------a 300 (378)
++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++..+ .+........++.+.+.. .
T Consensus 19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 98 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTE 98 (246)
T ss_pred cCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHH
Confidence 4467789999999999999999999999998765 666666322 111000011122222211 1
Q ss_pred hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 301 SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
.+..+.+.......+..||+|++|++.++++ ..|.|++||| |++++|+..+..+.++|.++.
T Consensus 99 ~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~ 162 (246)
T cd03237 99 IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDE----------PSAYLDVEQRLMASKVIRRFA 162 (246)
T ss_pred HHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH
Confidence 1233334444556778999999999999998 8999999999 999999999999999999874
No 184
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=3.2e-15 Score=129.50 Aligned_cols=119 Identities=24% Similarity=0.276 Sum_probs=85.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccchhHHHHHHHHHHhhhhhhhhc--cCc-h
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFA--HHP-L 312 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~--~~~-~ 312 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++... . ...+. ....+... ... .
T Consensus 19 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~----~~~~~-----~i~~~~q~~~~~~~~ 88 (173)
T cd03230 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKE-P----EEVKR-----RIGYLPEEPSLYENL 88 (173)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccc-h----Hhhhc-----cEEEEecCCccccCC
Confidence 46788999999999999999999999999998765 777877654221 0 00000 00000000 000 0
Q ss_pred hhhhH--hhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 313 LFWSL--LTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 313 ~~~~~--~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
..... +|.|++|++.++++ ..|.|+++|| |++++|+..+..+.++|.++...+.
T Consensus 89 tv~~~~~LS~G~~qrv~laral~~~p~illlDE----------Pt~~LD~~~~~~l~~~l~~~~~~g~ 146 (173)
T cd03230 89 TVRENLKLSGGMKQRLALAQALLHDPELLILDE----------PTSGLDPESRREFWELLRELKKEGK 146 (173)
T ss_pred cHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHHHCCC
Confidence 11111 89999999999998 8999999999 9999999999999999998854443
No 185
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=3.1e-15 Score=140.07 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=94.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc------------cccchhH------HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ------------KFIGEGS------RMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~------------~~~~~~~------~~v~~~~ 297 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+.. .++.+.+
T Consensus 26 vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l 105 (287)
T PRK13637 26 VNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDI 105 (287)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHH
Confidence 36789999999999999999999999999998875 77777754421 0222211 1233322
Q ss_pred HH-----------------hhhhhhhhc--cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCC
Q psy6098 298 VM-----------------ASLKKLAFA--HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGG 356 (378)
Q Consensus 298 ~~-----------------a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~ 356 (378)
.. ..++.+.+. ......+..+|+|++|+++++++ ..|.||++|| |++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDE----------Pt~gL 175 (287)
T PRK13637 106 AFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDE----------PTAGL 175 (287)
T ss_pred HhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC----------CccCC
Confidence 21 113333343 33566778999999999999999 8999999999 99999
Q ss_pred ChHHHHHHHHHHHhccC
Q psy6098 357 DSEVQRTMLELLNQLDG 373 (378)
Q Consensus 357 d~~~~~~~~~lL~~l~~ 373 (378)
|+..+..+.++|.++..
T Consensus 176 D~~~~~~l~~~l~~l~~ 192 (287)
T PRK13637 176 DPKGRDEILNKIKELHK 192 (287)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998854
No 186
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.58 E-value=2.8e-15 Score=144.26 Aligned_cols=126 Identities=21% Similarity=0.245 Sum_probs=94.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----------c---ccchh-----HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----------K---FIGEG-----SRMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----------~---~~~~~-----~~~v~~~ 296 (378)
-++.+.+|+.++|.||||+|||||+++|+|++.++ .|.+++.++.. . |+.+. ..++.+.
T Consensus 16 isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~en 95 (354)
T TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGN 95 (354)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHH
Confidence 46788999999999999999999999999998875 67777654311 0 11110 1123333
Q ss_pred HHHh---------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 297 FVMA---------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 297 ~~~a---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
+... .++.+.+.......+..||+|++|++.++++ ..|.+|+||| |++++|+.
T Consensus 96 l~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDE----------Pts~LD~~ 165 (354)
T TIGR02142 96 LRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDE----------PLAALDDP 165 (354)
T ss_pred HHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC----------CCcCCCHH
Confidence 2211 1333344555667788999999999999999 8999999999 99999999
Q ss_pred HHHHHHHHHHhccC
Q psy6098 360 VQRTMLELLNQLDG 373 (378)
Q Consensus 360 ~~~~~~~lL~~l~~ 373 (378)
.+..+.++|.++..
T Consensus 166 ~~~~l~~~L~~l~~ 179 (354)
T TIGR02142 166 RKYEILPYLERLHA 179 (354)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 187
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=3.4e-15 Score=137.52 Aligned_cols=126 Identities=21% Similarity=0.224 Sum_probs=93.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------c---ccchh-----HHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------K---FIGEG-----SRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~---~~~~~-----~~~v~~~~~~ 299 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 24 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 103 (255)
T PRK11300 24 VNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLV 103 (255)
T ss_pred eeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHH
Confidence 46788999999999999999999999999998765 67777654311 0 11110 0122222111
Q ss_pred --------------------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccc
Q psy6098 300 --------------------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSI 345 (378)
Q Consensus 300 --------------------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~ 345 (378)
..++.+.+.......+..+|+|++|+++++++ ..|++|++||
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE---- 179 (255)
T PRK11300 104 AQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDE---- 179 (255)
T ss_pred hhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC----
Confidence 01223344455566778899999999999998 8999999999
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 346 GSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 346 ~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 180 ------Pt~~LD~~~~~~l~~~L~~~~~ 201 (255)
T PRK11300 180 ------PAAGLNPKETKELDELIAELRN 201 (255)
T ss_pred ------CccCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999998854
No 188
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.57 E-value=2.6e-15 Score=144.31 Aligned_cols=126 Identities=22% Similarity=0.216 Sum_probs=95.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----------c---ccch-----hHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----------K---FIGE-----GSRMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----------~---~~~~-----~~~~v~~~ 296 (378)
-++.+.+|+.++|.||||||||||+++|+|.+.++ .|.+++.++.. . |+.+ ...++.+.
T Consensus 17 vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~en 96 (352)
T PRK11144 17 VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGN 96 (352)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHH
Confidence 47788999999999999999999999999998875 67777654321 0 1111 11123333
Q ss_pred HHH-----------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 297 FVM-----------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 297 ~~~-----------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
+.. ..++.+.+.......+..||+|++|+++++++ ..|.+|+||| |++++|+..+..
T Consensus 97 l~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDE----------Pts~LD~~~~~~ 166 (352)
T PRK11144 97 LRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDE----------PLASLDLPRKRE 166 (352)
T ss_pred HHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC----------CcccCCHHHHHH
Confidence 221 11333445555667788999999999999999 8999999999 999999999999
Q ss_pred HHHHHHhccC
Q psy6098 364 MLELLNQLDG 373 (378)
Q Consensus 364 ~~~lL~~l~~ 373 (378)
+.++|.++..
T Consensus 167 l~~~L~~l~~ 176 (352)
T PRK11144 167 LLPYLERLAR 176 (352)
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 189
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=3.1e-15 Score=145.26 Aligned_cols=125 Identities=21% Similarity=0.269 Sum_probs=95.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----------c---ccchh-----HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----------K---FIGEG-----SRMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----------~---~~~~~-----~~~v~~~ 296 (378)
.+|.+.+|+.++|.||||||||||+|+|+|++.+. .|.+++.++.. . |+.+. ..++.+.
T Consensus 47 isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~en 126 (400)
T PRK10070 47 ASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDN 126 (400)
T ss_pred EEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHH
Confidence 46789999999999999999999999999999876 77887754421 0 11111 1122322
Q ss_pred HHHh-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 297 FVMA-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 297 ~~~a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+... .+..+.+.......+..||+|++|++.++++ .+|+||+||| |++++|
T Consensus 127 l~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE----------Pts~LD 196 (400)
T PRK10070 127 TAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDE----------AFSALD 196 (400)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC----------CCccCC
Confidence 2211 1333445556667788999999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhcc
Q psy6098 358 SEVQRTMLELLNQLD 372 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~ 372 (378)
+..+..+.++|.++.
T Consensus 197 ~~~r~~l~~~L~~l~ 211 (400)
T PRK10070 197 PLIRTEMQDELVKLQ 211 (400)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998875
No 190
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=1.2e-15 Score=131.94 Aligned_cols=115 Identities=23% Similarity=0.240 Sum_probs=84.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccchhHHHHHH----HHHHhhhhhhhhccCc
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGEGSRMVRE----LFVMASLKKLAFAHHP 311 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~~~~~v~~----~~~~a~~~~~~~~~~~ 311 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .+.+++.++.... ....+. +++.. ....
T Consensus 21 i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~----~~~~~~~i~~~~~~~-------~~~~ 89 (171)
T cd03228 21 VSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD----LESLRKNIAYVPQDP-------FLFS 89 (171)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcC----HHHHHhhEEEEcCCc-------hhcc
Confidence 46789999999999999999999999999998865 7777776542210 000000 00000 0000
Q ss_pred hhhhhH-hhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 312 LLFWSL-LTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 312 ~~~~~~-~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
...++. +|.|++|++.++++ .+|++++||| |++++|+..+..+.++|.++..
T Consensus 90 ~t~~e~lLS~G~~~rl~la~al~~~p~llllDE----------P~~gLD~~~~~~l~~~l~~~~~ 144 (171)
T cd03228 90 GTIRENILSGGQRQRIAIARALLRDPPILILDE----------ATSALDPETEALILEALRALAK 144 (171)
T ss_pred chHHHHhhCHHHHHHHHHHHHHhcCCCEEEEEC----------CCcCCCHHHHHHHHHHHHHhcC
Confidence 111111 99999999999998 8999999999 9999999999999999998853
No 191
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=4e-15 Score=138.41 Aligned_cols=130 Identities=21% Similarity=0.150 Sum_probs=95.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------c---ccchh------HHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------K---FIGEG------SRMVRELFV 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~---~~~~~------~~~v~~~~~ 298 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++..+.. . |+.+. ..++.+.+.
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~ 100 (274)
T PRK13644 21 INLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLA 100 (274)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHH
Confidence 46789999999999999999999999999998765 67777654411 0 11111 112333222
Q ss_pred Hh-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 299 MA-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 299 ~a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
.. .++.+.+.......+..+|.|++|++.++++ ..|.||+||| |++++|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE----------Pt~gLD~~ 170 (274)
T PRK13644 101 FGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDE----------VTSMLDPD 170 (274)
T ss_pred hhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC----------CcccCCHH
Confidence 11 1223334444556677899999999999998 8999999999 99999999
Q ss_pred HHHHHHHHHHhccCCCCC
Q psy6098 360 VQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 360 ~~~~~~~lL~~l~~~~~~ 377 (378)
.+..++++|.++...+.|
T Consensus 171 ~~~~l~~~l~~l~~~g~t 188 (274)
T PRK13644 171 SGIAVLERIKKLHEKGKT 188 (274)
T ss_pred HHHHHHHHHHHHHhCCCE
Confidence 999999999988654543
No 192
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=4.2e-15 Score=132.02 Aligned_cols=120 Identities=23% Similarity=0.210 Sum_probs=92.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC---ce--EEEeccCccccc---------ccch-----hHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---CT--FIRVSGSELVQK---------FIGE-----GSRMVRELFV 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~---~~--~i~~~~~~l~~~---------~~~~-----~~~~v~~~~~ 298 (378)
-+|.+.+|+.++|.||||+|||||+++|+|... +. .|.+++.++... |+.+ ...++++.+.
T Consensus 26 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 105 (202)
T cd03233 26 FSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLD 105 (202)
T ss_pred EEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHh
Confidence 367889999999999999999999999999987 33 778877654210 1111 1124555544
Q ss_pred HhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 299 MASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 299 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
.+... .....+..+|.|++|++.++++ ..|.+++||| |++++|+..++.+.++|.++..
T Consensus 106 ~~~~~------~~~~~~~~LS~Ge~qrl~laral~~~p~llllDE----------Pt~~LD~~~~~~~~~~l~~~~~ 166 (202)
T cd03233 106 FALRC------KGNEFVRGISGGERKRVSIAEALVSRASVLCWDN----------STRGLDSSTALEILKCIRTMAD 166 (202)
T ss_pred hhhhh------ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcC----------CCccCCHHHHHHHHHHHHHHHH
Confidence 33110 1445677899999999999998 8999999999 9999999999999999998854
No 193
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.57 E-value=3.4e-15 Score=138.55 Aligned_cols=126 Identities=21% Similarity=0.247 Sum_probs=93.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------c---ccchh-----HHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------K---FIGEG-----SRMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~---~~~~~-----~~~v~~~~ 297 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl 105 (269)
T PRK11831 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNV 105 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHH
Confidence 46789999999999999999999999999998765 67777643311 0 11110 01222222
Q ss_pred HH------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 298 VM------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 298 ~~------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
.. ..+..+.+.......+..+|+|++|++.++++ ..|.||+||| |++++|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE----------Pt~~LD 175 (269)
T PRK11831 106 AYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDE----------PFVGQD 175 (269)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------CCccCC
Confidence 11 01233344455566778999999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccC
Q psy6098 358 SEVQRTMLELLNQLDG 373 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~ 373 (378)
+..+..+.++|.++..
T Consensus 176 ~~~~~~l~~~l~~~~~ 191 (269)
T PRK11831 176 PITMGVLVKLISELNS 191 (269)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998753
No 194
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=4.1e-15 Score=138.72 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=94.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------cccchhH------HHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------KFIGEGS------RMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~~~~~~~------~~v~~~~~~ 299 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+.. .++.+.+..
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~ 105 (279)
T PRK13650 26 VSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAF 105 (279)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHh
Confidence 46788999999999999999999999999998766 77777765421 0111111 123332221
Q ss_pred h-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 300 A-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 300 a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
. .+..+.+.......+..+|+|++|++.++++ ..|+||+||| |++++|+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE----------Pt~~LD~~~ 175 (279)
T PRK13650 106 GLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDE----------ATSMLDPEG 175 (279)
T ss_pred hHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC----------CcccCCHHH
Confidence 1 1233344445566778999999999999998 9999999999 999999999
Q ss_pred HHHHHHHHHhccC
Q psy6098 361 QRTMLELLNQLDG 373 (378)
Q Consensus 361 ~~~~~~lL~~l~~ 373 (378)
+..+.++|.++..
T Consensus 176 ~~~l~~~l~~l~~ 188 (279)
T PRK13650 176 RLELIKTIKGIRD 188 (279)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998854
No 195
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.57 E-value=4.7e-15 Score=129.08 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=85.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccchhHHHHHHH----HHHhhhhhhhhccCc
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGEGSRMVREL----FVMASLKKLAFAHHP 311 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~~~~~v~~~----~~~a~~~~~~~~~~~ 311 (378)
-++.+.+|+.++|.||||+|||||+++|+|...+. .|.+++.++... ....+.. ++...+ ... ...
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-----~~~~~~~i~~~~q~~~~--~~~-tv~ 92 (178)
T cd03247 21 LSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-----EKALSSLISVLNQRPYL--FDT-TLR 92 (178)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-----HHHHHhhEEEEccCCee--ecc-cHH
Confidence 46789999999999999999999999999998765 777877544210 0000000 000000 000 000
Q ss_pred hhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 312 LLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
...+..+|.|++|++.++++ ..|++++||| |++++|+..+..++++|.++.
T Consensus 93 ~~i~~~LS~G~~qrv~laral~~~p~~lllDE----------P~~~LD~~~~~~l~~~l~~~~ 145 (178)
T cd03247 93 NNLGRRFSGGERQRLALARILLQDAPIVLLDE----------PTVGLDPITERQLLSLIFEVL 145 (178)
T ss_pred HhhcccCCHHHHHHHHHHHHHhcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHc
Confidence 00166899999999999998 8999999999 999999999999999999875
No 196
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=5.4e-15 Score=137.85 Aligned_cols=127 Identities=21% Similarity=0.189 Sum_probs=96.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------cccchhH------HHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------KFIGEGS------RMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~~~~~~~------~~v~~~~~~ 299 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+.. .++.+.+..
T Consensus 26 vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~ 105 (279)
T PRK13635 26 VSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAF 105 (279)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhh
Confidence 46789999999999999999999999999999876 78887765421 0222211 123333221
Q ss_pred h-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 300 A-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 300 a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
. .+..+.+.......+..+|+|++|++.++++ ..|+|||||| |++++|+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE----------Pt~gLD~~~ 175 (279)
T PRK13635 106 GLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDE----------ATSMLDPRG 175 (279)
T ss_pred hHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC----------CcccCCHHH
Confidence 1 1222334455666777999999999999998 9999999999 999999999
Q ss_pred HHHHHHHHHhccCC
Q psy6098 361 QRTMLELLNQLDGF 374 (378)
Q Consensus 361 ~~~~~~lL~~l~~~ 374 (378)
+..+.++|.++...
T Consensus 176 ~~~l~~~l~~l~~~ 189 (279)
T PRK13635 176 RREVLETVRQLKEQ 189 (279)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999988643
No 197
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=4.3e-15 Score=138.71 Aligned_cols=129 Identities=16% Similarity=0.113 Sum_probs=93.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------------cccchhH------HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------------KFIGEGS------RMVRE 295 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------------~~~~~~~------~~v~~ 295 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+.. .++.+
T Consensus 26 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 105 (280)
T PRK13649 26 VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLK 105 (280)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHH
Confidence 46788999999999999999999999999998765 67777654321 1222211 12333
Q ss_pred HHHHh-----------------hhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCC
Q psy6098 296 LFVMA-----------------SLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSG 355 (378)
Q Consensus 296 ~~~~a-----------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~ 355 (378)
.+... .+..+.+. ......+..+|+|++|+++++++ ..|+||+||| |+++
T Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE----------Pt~~ 175 (280)
T PRK13649 106 DVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDE----------PTAG 175 (280)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC----------Cccc
Confidence 32211 01122232 23455677899999999999998 8999999999 9999
Q ss_pred CChHHHHHHHHHHHhccCCCC
Q psy6098 356 GDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 356 ~d~~~~~~~~~lL~~l~~~~~ 376 (378)
+|+..+..+.++|.++...+.
T Consensus 176 LD~~~~~~l~~~l~~~~~~~~ 196 (280)
T PRK13649 176 LDPKGRKELMTLFKKLHQSGM 196 (280)
T ss_pred CCHHHHHHHHHHHHHHHHCCC
Confidence 999999999999998854443
No 198
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.56 E-value=4.8e-15 Score=127.46 Aligned_cols=110 Identities=27% Similarity=0.308 Sum_probs=85.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcc----cccccchhHHHHHHHHHHhhhhhhhhccCc
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL----VQKFIGEGSRMVRELFVMASLKKLAFAHHP 311 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l----~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~ 311 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++..- .+.. .....++.+.+...
T Consensus 20 i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~-~~~~~tv~~nl~~~----------- 87 (166)
T cd03223 20 LSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRP-YLPLGTLREQLIYP----------- 87 (166)
T ss_pred CeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCC-ccccccHHHHhhcc-----------
Confidence 46788999999999999999999999999998765 666655211 1111 01112444443321
Q ss_pred hhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhc
Q psy6098 312 LLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 371 (378)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l 371 (378)
....+|.|++|++.++++ ..|+++++|| |++++|+..+..+.++|.++
T Consensus 88 --~~~~LS~G~~~rv~laral~~~p~~lllDE----------Pt~~LD~~~~~~l~~~l~~~ 137 (166)
T cd03223 88 --WDDVLSGGEQQRLAFARLLLHKPKFVFLDE----------ATSALDEESEDRLYQLLKEL 137 (166)
T ss_pred --CCCCCCHHHHHHHHHHHHHHcCCCEEEEEC----------CccccCHHHHHHHHHHHHHh
Confidence 356899999999999998 8999999999 99999999999999999876
No 199
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.56 E-value=3.6e-15 Score=155.79 Aligned_cols=152 Identities=19% Similarity=0.309 Sum_probs=113.8
Q ss_pred ecCccccccccCccchhhcccchhhhhhhcCCCCchhhhhhccccCCCCCcc------------------cccCcHHHHH
Q psy6098 160 DIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYE------------------MVGGLDNQIK 221 (378)
Q Consensus 160 ~l~~~i~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~------------------~i~g~~~~~~ 221 (378)
.+...++...+++..+....++..++.++.+.+.++.+.+.+.+++-+.+|. ++.|++++|+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~ 332 (784)
T PRK10787 253 ALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKD 332 (784)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHH
Confidence 3445566667777888888888899999999999999999999998888883 5899999999
Q ss_pred HHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccc---------cccchhHHH
Q psy6098 222 EIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ---------KFIGEGSRM 292 (378)
Q Consensus 222 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~---------~~~~~~~~~ 292 (378)
.|.+++..... .+-..+..++|+||||+||||+++.||+.++.++++++...... .|.|.....
T Consensus 333 ~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~ 405 (784)
T PRK10787 333 RILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGK 405 (784)
T ss_pred HHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcH
Confidence 99887764221 12245678999999999999999999999999988876554321 244444444
Q ss_pred HHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCC
Q psy6098 293 VRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSS 348 (378)
Q Consensus 293 v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~ 348 (378)
+.+.+..+ .. ..+||||||||++.++
T Consensus 406 ~~~~l~~~-----------------------------~~-~~~villDEidk~~~~ 431 (784)
T PRK10787 406 LIQKMAKV-----------------------------GV-KNPLFLLDEIDKMSSD 431 (784)
T ss_pred HHHHHHhc-----------------------------CC-CCCEEEEEChhhcccc
Confidence 44444333 22 3349999999999865
No 200
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.56 E-value=6.4e-15 Score=130.01 Aligned_cols=117 Identities=25% Similarity=0.294 Sum_probs=88.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhc--Cce--EEEeccCccccc-------ccchh-----HHHHHHHHHHhh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--ECT--FIRVSGSELVQK-------FIGEG-----SRMVRELFVMAS 301 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~--~~~--~i~~~~~~l~~~-------~~~~~-----~~~v~~~~~~a~ 301 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+ .+. .|.+++.++... |+.+. ..++.+.+....
T Consensus 28 ~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~ 107 (194)
T cd03213 28 VSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAA 107 (194)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHH
Confidence 46788999999999999999999999999998 765 777877654220 11111 112333322210
Q ss_pred hhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 302 LKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
....+|.|++|++.++++ .+|+++++|| |++++|+..+..+.++|.++...+.
T Consensus 108 ------------~~~~LS~G~~qrv~laral~~~p~illlDE----------P~~~LD~~~~~~l~~~l~~~~~~~~ 162 (194)
T cd03213 108 ------------KLRGLSGGERKRVSIALELVSNPSLLFLDE----------PTSGLDSSSALQVMSLLRRLADTGR 162 (194)
T ss_pred ------------HhccCCHHHHHHHHHHHHHHcCCCEEEEeC----------CCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 011799999999999998 8999999999 9999999999999999998865443
No 201
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.56 E-value=4.2e-15 Score=133.69 Aligned_cols=123 Identities=25% Similarity=0.228 Sum_probs=101.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFW 315 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~ 315 (378)
-+|.+..|+.++|.|.+||||||++|+|.++..++ .|.++|.++......+..+.+.++++...+. .......+
T Consensus 32 Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~----~~~~~ryP 107 (268)
T COG4608 32 VSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLP----EEFLYRYP 107 (268)
T ss_pred eeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCC----HHHhhcCC
Confidence 47899999999999999999999999999999987 8999998875544333344566666554321 23556677
Q ss_pred hHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCC
Q psy6098 316 SLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGF 374 (378)
Q Consensus 316 ~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~ 374 (378)
..+|+|++||+.+||+ -.|.+|++|| |++.+|...+..+.++|..++..
T Consensus 108 helSGGQrQRi~IARALal~P~liV~DE----------pvSaLDvSiqaqIlnLL~dlq~~ 158 (268)
T COG4608 108 HELSGGQRQRIGIARALALNPKLIVADE----------PVSALDVSVQAQILNLLKDLQEE 158 (268)
T ss_pred cccCchhhhhHHHHHHHhhCCcEEEecC----------chhhcchhHHHHHHHHHHHHHHH
Confidence 7999999999999999 8999999999 99999999999999999988643
No 202
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.56 E-value=1.8e-14 Score=118.53 Aligned_cols=96 Identities=41% Similarity=0.684 Sum_probs=79.3
Q ss_pred eeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhc
Q psy6098 248 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVC 327 (378)
Q Consensus 248 ~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (378)
++|+||||||||++++.+|..++.+++.+++.++...+.+.+.+.+...|..+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~--------------------------- 53 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKA--------------------------- 53 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHH---------------------------
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccc---------------------------
Confidence 68999999999999999999999999999999999889999999999999988
Q ss_pred ccccCC-CeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCC
Q psy6098 328 NFREHA-PSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 375 (378)
Q Consensus 328 ~~~~~~-p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~ 375 (378)
+... |+||||||+|.+.+.. . ...+......+..++..++...
T Consensus 54 --~~~~~~~vl~iDe~d~l~~~~-~--~~~~~~~~~~~~~L~~~l~~~~ 97 (132)
T PF00004_consen 54 --KKSAKPCVLFIDEIDKLFPKS-Q--PSSSSFEQRLLNQLLSLLDNPS 97 (132)
T ss_dssp --HHTSTSEEEEEETGGGTSHHC-S--TSSSHHHHHHHHHHHHHHHTTT
T ss_pred --cccccceeeeeccchhccccc-c--cccccccccccceeeecccccc
Confidence 4445 9999999999999887 1 1234445555666666666543
No 203
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.56 E-value=9.4e-15 Score=133.51 Aligned_cols=126 Identities=21% Similarity=0.222 Sum_probs=93.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------c---ccchh-----HHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------K---FIGEG-----SRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~---~~~~~-----~~~v~~~~~~ 299 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~ 100 (242)
T TIGR03411 21 LSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLEL 100 (242)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHH
Confidence 46788999999999999999999999999998765 77777754311 0 11100 0122222111
Q ss_pred -------------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCC
Q psy6098 300 -------------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIES 352 (378)
Q Consensus 300 -------------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~ 352 (378)
..+..+.+.......+..+|+|++|+++++++ ..|+||+||| |
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDE----------P 170 (242)
T TIGR03411 101 ALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDE----------P 170 (242)
T ss_pred hhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecC----------C
Confidence 11333344455566788999999999999998 8999999999 9
Q ss_pred CCCCChHHHHHHHHHHHhccC
Q psy6098 353 GSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 353 ~~~~d~~~~~~~~~lL~~l~~ 373 (378)
++++|+..+..+.++|.++..
T Consensus 171 t~~LD~~~~~~l~~~l~~~~~ 191 (242)
T TIGR03411 171 VAGMTDEETEKTAELLKSLAG 191 (242)
T ss_pred ccCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999998754
No 204
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=4.1e-15 Score=138.14 Aligned_cols=127 Identities=19% Similarity=0.165 Sum_probs=94.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------cccchhH------HHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------KFIGEGS------RMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~~~~~~~------~~v~~~~~~ 299 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+.. .++.+.+..
T Consensus 28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~ 107 (271)
T PRK13632 28 VSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAF 107 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHh
Confidence 46788999999999999999999999999998765 77777755421 1222111 133443322
Q ss_pred h-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 300 A-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 300 a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
. .++.+.+.......+..+|.|++|++.++++ .+|+||+||| |++++|+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE----------P~~gLD~~~ 177 (271)
T PRK13632 108 GLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDE----------STSMLDPKG 177 (271)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC----------CcccCCHHH
Confidence 1 1222233444556677899999999999998 8999999999 999999999
Q ss_pred HHHHHHHHHhccCC
Q psy6098 361 QRTMLELLNQLDGF 374 (378)
Q Consensus 361 ~~~~~~lL~~l~~~ 374 (378)
+..+.++|.++...
T Consensus 178 ~~~l~~~l~~~~~~ 191 (271)
T PRK13632 178 KREIKKIMVDLRKT 191 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987543
No 205
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=5.4e-15 Score=138.39 Aligned_cols=126 Identities=19% Similarity=0.195 Sum_probs=94.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------------cccchh------HHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------------KFIGEG------SRMVRE 295 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------------~~~~~~------~~~v~~ 295 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.++ .|.+++.++.. .|+.+. ..++.+
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e 105 (286)
T PRK13646 26 VNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVER 105 (286)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHH
Confidence 46788999999999999999999999999998876 78887755421 022221 113333
Q ss_pred HHHHh-----------------hhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCC
Q psy6098 296 LFVMA-----------------SLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSG 355 (378)
Q Consensus 296 ~~~~a-----------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~ 355 (378)
.+... .+..+.+. ......+..+|+|++|++.++++ ..|+||+||| |+++
T Consensus 106 ~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDE----------Pt~~ 175 (286)
T PRK13646 106 EIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDE----------PTAG 175 (286)
T ss_pred HHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC----------Cccc
Confidence 33221 12223333 33455678999999999999998 8999999999 9999
Q ss_pred CChHHHHHHHHHHHhccC
Q psy6098 356 GDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 356 ~d~~~~~~~~~lL~~l~~ 373 (378)
+|+..+..+.++|.++..
T Consensus 176 LD~~~~~~l~~~l~~l~~ 193 (286)
T PRK13646 176 LDPQSKRQVMRLLKSLQT 193 (286)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999998853
No 206
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=4.8e-15 Score=135.03 Aligned_cols=130 Identities=21% Similarity=0.274 Sum_probs=92.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------c---ccchh-----HHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------K---FIGEG-----SRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~---~~~~~-----~~~v~~~~~~ 299 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 24 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 103 (237)
T PRK11614 24 VSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAM 103 (237)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHH
Confidence 46789999999999999999999999999998765 77777754311 0 11110 0122222211
Q ss_pred h---------------hhhhh-hhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHH
Q psy6098 300 A---------------SLKKL-AFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 361 (378)
Q Consensus 300 a---------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~ 361 (378)
+ .+..+ .+.......+..+|.|++|++.++++ ..|+||+||| |++++|+..+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDE----------Pt~~LD~~~~ 173 (237)
T PRK11614 104 GGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE----------PSLGLAPIII 173 (237)
T ss_pred hhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC----------ccccCCHHHH
Confidence 1 01122 12223345677899999999999998 8999999999 9999999999
Q ss_pred HHHHHHHHhccCCCCC
Q psy6098 362 RTMLELLNQLDGFEAT 377 (378)
Q Consensus 362 ~~~~~lL~~l~~~~~~ 377 (378)
..+.++|.++...+.|
T Consensus 174 ~~l~~~l~~~~~~~~t 189 (237)
T PRK11614 174 QQIFDTIEQLREQGMT 189 (237)
T ss_pred HHHHHHHHHHHHCCCE
Confidence 9999999988644443
No 207
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.56 E-value=5.5e-15 Score=127.90 Aligned_cols=97 Identities=18% Similarity=0.082 Sum_probs=80.1
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhh
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWS 316 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~ 316 (378)
.+.+.+|+.++|.||||+|||||+++|+|.+.++ .|.+++..+. |..+ ..
T Consensus 19 ~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~--~~~q-------------------~~------- 70 (177)
T cd03222 19 LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV--YKPQ-------------------YI------- 70 (177)
T ss_pred CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEE--EEcc-------------------cC-------
Confidence 3578899999999999999999999999998876 7777764321 1100 00
Q ss_pred Hhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 317 LLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 317 ~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
.+|+|++|+++++++ ..|.++++|| |++++|+..+..+.++|.++..
T Consensus 71 ~LSgGq~qrv~laral~~~p~lllLDE----------Pts~LD~~~~~~l~~~l~~~~~ 119 (177)
T cd03222 71 DLSGGELQRVAIAAALLRNATFYLFDE----------PSAYLDIEQRLNAARAIRRLSE 119 (177)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHHH
Confidence 189999999999998 8999999999 9999999999999999988743
No 208
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.56 E-value=6.4e-15 Score=133.29 Aligned_cols=126 Identities=20% Similarity=0.245 Sum_probs=91.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhc-----Cce--EEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----ECT--FIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~-----~~~--~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+ .+. .|.+++.++.. . |+.+. ..++.
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 98 (227)
T cd03260 19 ISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIY 98 (227)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHH
Confidence 46788999999999999999999999999998 654 77777754421 0 11111 11333
Q ss_pred HHHHHh------------------hhhhhhhccCchhh--hhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCC
Q psy6098 295 ELFVMA------------------SLKKLAFAHHPLLF--WSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIES 352 (378)
Q Consensus 295 ~~~~~a------------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~ 352 (378)
+.+... .++.+.+....... +..+|+|++|+++++++ ..|++|++|| |
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE----------P 168 (227)
T cd03260 99 DNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDE----------P 168 (227)
T ss_pred HHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC----------C
Confidence 332211 11222223222333 48899999999999998 8999999999 9
Q ss_pred CCCCChHHHHHHHHHHHhccC
Q psy6098 353 GSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 353 ~~~~d~~~~~~~~~lL~~l~~ 373 (378)
++++|+..+..+.++|.++..
T Consensus 169 t~~LD~~~~~~l~~~l~~~~~ 189 (227)
T cd03260 169 TSALDPISTAKIEELIAELKK 189 (227)
T ss_pred CccCCHHHHHHHHHHHHHHhh
Confidence 999999999999999998754
No 209
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=4.9e-15 Score=136.48 Aligned_cols=129 Identities=17% Similarity=0.182 Sum_probs=92.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------c---ccch-----hHHHHHHHHHH-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------K---FIGE-----GSRMVRELFVM- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~---~~~~-----~~~~v~~~~~~- 299 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+ ...++.+.+..
T Consensus 21 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~ 100 (255)
T PRK11231 21 LSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYG 100 (255)
T ss_pred eeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhc
Confidence 35778899999999999999999999999998765 67777654311 0 1100 00122222211
Q ss_pred --------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 300 --------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 300 --------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
..+..+.+.......+..+|+|++|++.++++ ..|++++||| |++++|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE----------P~~~LD 170 (255)
T PRK11231 101 RSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDE----------PTTYLD 170 (255)
T ss_pred cchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC----------CcccCC
Confidence 11222233444456677899999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccCCCC
Q psy6098 358 SEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~~~~ 376 (378)
+..+..+.++|.++...+.
T Consensus 171 ~~~~~~l~~~l~~l~~~~~ 189 (255)
T PRK11231 171 INHQVELMRLMRELNTQGK 189 (255)
T ss_pred HHHHHHHHHHHHHHHHCCC
Confidence 9999999999998754443
No 210
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.56 E-value=5.8e-15 Score=136.36 Aligned_cols=129 Identities=15% Similarity=0.067 Sum_probs=90.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCc-c-cccccchhHHHHHHHHHH--------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSE-L-VQKFIGEGSRMVRELFVM-------------- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~-l-~~~~~~~~~~~v~~~~~~-------------- 299 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.. . .+...-....++.+.+..
T Consensus 43 is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~ 122 (264)
T PRK13546 43 ISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKA 122 (264)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHH
Confidence 46789999999999999999999999999998765 66665531 1 011000000011111110
Q ss_pred ---hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCC
Q psy6098 300 ---ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGF 374 (378)
Q Consensus 300 ---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~ 374 (378)
..++.+.+..........+|.|++|++.++++ ..|.||+||| |++++|+..+..+.++|.++...
T Consensus 123 ~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDE----------Pt~gLD~~~~~~l~~~L~~~~~~ 192 (264)
T PRK13546 123 MTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDE----------ALSVGDQTFAQKCLDKIYEFKEQ 192 (264)
T ss_pred HHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeC----------ccccCCHHHHHHHHHHHHHHHHC
Confidence 01222233344455677899999999999988 8999999999 99999999999999999887544
Q ss_pred CC
Q psy6098 375 EA 376 (378)
Q Consensus 375 ~~ 376 (378)
+.
T Consensus 193 g~ 194 (264)
T PRK13546 193 NK 194 (264)
T ss_pred CC
Confidence 43
No 211
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=5.9e-15 Score=138.23 Aligned_cols=130 Identities=17% Similarity=0.113 Sum_probs=95.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------------cccchhH------HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------------KFIGEGS------RMVRE 295 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------------~~~~~~~------~~v~~ 295 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+.. .++.+
T Consensus 25 vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~ 104 (288)
T PRK13643 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLK 104 (288)
T ss_pred eEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHH
Confidence 46789999999999999999999999999998876 77787754310 0111111 12333
Q ss_pred HHHHh-----------------hhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCC
Q psy6098 296 LFVMA-----------------SLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSG 355 (378)
Q Consensus 296 ~~~~a-----------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~ 355 (378)
.+... .++.+.+. ......+..+|.|++|+++++++ ..|+||+||| |+++
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDE----------Pt~g 174 (288)
T PRK13643 105 DVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDE----------PTAG 174 (288)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC----------CccC
Confidence 22211 12222332 23456778899999999999998 8999999999 9999
Q ss_pred CChHHHHHHHHHHHhccCCCCC
Q psy6098 356 GDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 356 ~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
+|+..++.+.++|.++...+.|
T Consensus 175 LD~~~~~~l~~~l~~l~~~g~t 196 (288)
T PRK13643 175 LDPKARIEMMQLFESIHQSGQT 196 (288)
T ss_pred CCHHHHHHHHHHHHHHHHCCCE
Confidence 9999999999999988654443
No 212
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=8.2e-15 Score=136.40 Aligned_cols=129 Identities=21% Similarity=0.158 Sum_probs=96.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc------------cccchhH------HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ------------KFIGEGS------RMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~------------~~~~~~~------~~v~~~~ 297 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+.. .++.+.+
T Consensus 21 vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i 100 (275)
T PRK13639 21 INFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDV 100 (275)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHH
Confidence 46789999999999999999999999999998765 77777754410 0222211 1222222
Q ss_pred HH-----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 298 VM-----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 298 ~~-----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
.. ..++.+.+.......+..+|.|++|++.++++ ..|+++++|| |++++|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE----------Pt~gLD~ 170 (275)
T PRK13639 101 AFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDE----------PTSGLDP 170 (275)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCcCCCH
Confidence 21 11333344555667788999999999999998 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccCCCC
Q psy6098 359 EVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~~~ 376 (378)
..+..+.++|.++...+.
T Consensus 171 ~~~~~l~~~l~~l~~~~~ 188 (275)
T PRK13639 171 MGASQIMKLLYDLNKEGI 188 (275)
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 999999999998854343
No 213
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=6e-15 Score=139.03 Aligned_cols=130 Identities=15% Similarity=0.095 Sum_probs=94.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccc-------------------------------c-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELV-------------------------------Q- 283 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~-------------------------------~- 283 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.++ .|.+++.+.. .
T Consensus 26 vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (305)
T PRK13651 26 VSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRR 105 (305)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHh
Confidence 46788999999999999999999999999998875 6666532210 0
Q ss_pred --cccchh------HHHHHHHHHH-----------------hhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCe
Q psy6098 284 --KFIGEG------SRMVRELFVM-----------------ASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPS 335 (378)
Q Consensus 284 --~~~~~~------~~~v~~~~~~-----------------a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~ 335 (378)
.|+.+. ..++.+.+.. ..+..+.+. ......+..||+|++|++.++++ ..|.
T Consensus 106 ~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~ 185 (305)
T PRK13651 106 RVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPD 185 (305)
T ss_pred ceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 011111 1122222211 113333443 44567788999999999999998 8999
Q ss_pred EEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 336 IIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 336 vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
||+||| |++++|+..+..+.++|.++...+.|
T Consensus 186 lLlLDE----------Pt~~LD~~~~~~l~~~l~~l~~~g~t 217 (305)
T PRK13651 186 FLVFDE----------PTAGLDPQGVKEILEIFDNLNKQGKT 217 (305)
T ss_pred EEEEeC----------CCCCCCHHHHHHHHHHHHHHHHCCCE
Confidence 999999 99999999999999999998655543
No 214
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.55 E-value=6.8e-15 Score=133.92 Aligned_cols=126 Identities=21% Similarity=0.183 Sum_probs=90.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc---------cccc-h-----hHHHHHHHHHH-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ---------KFIG-E-----GSRMVRELFVM- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~---------~~~~-~-----~~~~v~~~~~~- 299 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++..+.. .|+. + ...++.+.+..
T Consensus 40 vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~ 119 (236)
T cd03267 40 ISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLL 119 (236)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHH
Confidence 35778899999999999999999999999998765 66665532200 0111 0 00112221110
Q ss_pred ----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHH
Q psy6098 300 ----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 361 (378)
Q Consensus 300 ----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~ 361 (378)
..++.+.+.......+..+|.|++|++.++++ ..|.|++||| |++++|+..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE----------Pt~~LD~~~~ 189 (236)
T cd03267 120 AAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDE----------PTIGLDVVAQ 189 (236)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------CCCCCCHHHH
Confidence 11222334444556778999999999999998 8999999999 9999999999
Q ss_pred HHHHHHHHhccC
Q psy6098 362 RTMLELLNQLDG 373 (378)
Q Consensus 362 ~~~~~lL~~l~~ 373 (378)
..+.++|.++..
T Consensus 190 ~~l~~~l~~~~~ 201 (236)
T cd03267 190 ENIRNFLKEYNR 201 (236)
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 215
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.55 E-value=5.5e-15 Score=133.73 Aligned_cols=126 Identities=25% Similarity=0.269 Sum_probs=91.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------c---ccchhH-------HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------K---FIGEGS-------RMVRE 295 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~---~~~~~~-------~~v~~ 295 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+.. .++.+
T Consensus 24 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~ 103 (228)
T cd03257 24 VSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGE 103 (228)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHH
Confidence 46788999999999999999999999999998765 67776644311 0 111110 12222
Q ss_pred HHHH-------------------hhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCC
Q psy6098 296 LFVM-------------------ASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESG 353 (378)
Q Consensus 296 ~~~~-------------------a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~ 353 (378)
.+.. ..+..+.+. ......+..+|+|++|++.++++ ..|+||+||| |+
T Consensus 104 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE----------Pt 173 (228)
T cd03257 104 QIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADE----------PT 173 (228)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecC----------CC
Confidence 2211 011222222 23455677899999999999998 8999999999 99
Q ss_pred CCCChHHHHHHHHHHHhccC
Q psy6098 354 SGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 354 ~~~d~~~~~~~~~lL~~l~~ 373 (378)
+++|+..+..+.++|.++..
T Consensus 174 ~~LD~~~~~~l~~~l~~~~~ 193 (228)
T cd03257 174 SALDVSVQAQILDLLKKLQE 193 (228)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999998854
No 216
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.55 E-value=1.2e-14 Score=131.24 Aligned_cols=127 Identities=23% Similarity=0.262 Sum_probs=92.6
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----cccchh-------HHHHHHHHH-------
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----KFIGEG-------SRMVRELFV------- 298 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----~~~~~~-------~~~v~~~~~------- 298 (378)
|.+.+|+.++|.||||+|||||+++|+|...++ .|.+++.++.. .|+.+. ..++.+.+.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 467899999999999999999999999998765 77777754310 011100 011211111
Q ss_pred --------------HhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 299 --------------MASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 299 --------------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
...++.+.+.......+..+|.|++|+++++++ ..|.++++|| |++++|+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDE----------P~~~LD~~~~~ 150 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDE----------PFTGLDMPTQE 150 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CcccCCHHHHH
Confidence 011333344455566778999999999999998 8999999999 99999999999
Q ss_pred HHHHHHHhccCCCC
Q psy6098 363 TMLELLNQLDGFEA 376 (378)
Q Consensus 363 ~~~~lL~~l~~~~~ 376 (378)
.+.++|.++...+.
T Consensus 151 ~l~~~l~~~~~~~~ 164 (223)
T TIGR03771 151 LLTELFIELAGAGT 164 (223)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999998865444
No 217
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=7.3e-15 Score=134.15 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=92.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------c---ccchh----HHHHHHHHHHh-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------K---FIGEG----SRMVRELFVMA- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~---~~~~~----~~~v~~~~~~a- 300 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ...+.+.+...
T Consensus 22 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~ 101 (241)
T PRK14250 22 ISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGP 101 (241)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcch
Confidence 46788899999999999999999999999998765 77777754321 0 11111 11333322211
Q ss_pred ------------hhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHH
Q psy6098 301 ------------SLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML 365 (378)
Q Consensus 301 ------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~ 365 (378)
.++.+.+. ......+..+|+|++|+++++++ ..|.+|++|| |++++|+..+..+.
T Consensus 102 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE----------Pt~~LD~~~~~~l~ 171 (241)
T PRK14250 102 MLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE----------PTSALDPTSTEIIE 171 (241)
T ss_pred hhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC----------CcccCCHHHHHHHH
Confidence 12223332 23455677899999999999998 8999999999 99999999999999
Q ss_pred HHHHhccC
Q psy6098 366 ELLNQLDG 373 (378)
Q Consensus 366 ~lL~~l~~ 373 (378)
++|.++..
T Consensus 172 ~~l~~~~~ 179 (241)
T PRK14250 172 ELIVKLKN 179 (241)
T ss_pred HHHHHHHH
Confidence 99998754
No 218
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.55 E-value=4.9e-15 Score=136.65 Aligned_cols=125 Identities=26% Similarity=0.301 Sum_probs=91.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------c---ccch-----hHHHHHHHHHH-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------K---FIGE-----GSRMVRELFVM- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~---~~~~-----~~~~v~~~~~~- 299 (378)
.+|.+.+|+.++|+||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+ ...++.+.+..
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 100 (258)
T PRK13548 21 VSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMG 100 (258)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhh
Confidence 46788899999999999999999999999998765 67776654311 0 1111 01122332211
Q ss_pred ----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc-C-------CCeEEEEecCccccCCCCCCCCC
Q psy6098 300 ----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE-H-------APSIIFMDEIDSIGSSRIESGSG 355 (378)
Q Consensus 300 ----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~p~vl~lDEid~~~~~r~~~~~~ 355 (378)
..++.+.+.......+..+|+|++|+++++++ . .|.||+||| |+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDE----------Pt~~ 170 (258)
T PRK13548 101 RAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDE----------PTSA 170 (258)
T ss_pred hcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeC----------Cccc
Confidence 11233334444566778999999999999998 2 799999999 9999
Q ss_pred CChHHHHHHHHHHHhcc
Q psy6098 356 GDSEVQRTMLELLNQLD 372 (378)
Q Consensus 356 ~d~~~~~~~~~lL~~l~ 372 (378)
+|+..+..+.++|.++.
T Consensus 171 LD~~~~~~l~~~l~~~~ 187 (258)
T PRK13548 171 LDLAHQHHVLRLARQLA 187 (258)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999999875
No 219
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.55 E-value=6.7e-15 Score=135.69 Aligned_cols=129 Identities=19% Similarity=0.204 Sum_probs=93.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------------------c---ccchh---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------------------K---FIGEG--- 289 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------------------~---~~~~~--- 289 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+.
T Consensus 24 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l 103 (257)
T PRK10619 24 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL 103 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCccc
Confidence 46788999999999999999999999999998765 77777654320 0 11110
Q ss_pred --HHHHHHHHHH------------------hhhhhhhhccC-chhhhhHhhhhhhhhhccccc--CCCeEEEEecCcccc
Q psy6098 290 --SRMVRELFVM------------------ASLKKLAFAHH-PLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIG 346 (378)
Q Consensus 290 --~~~v~~~~~~------------------a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~ 346 (378)
...+.+.+.. ..++.+.+... ....+..+|+|++|+++++++ ..|+||+|||
T Consensus 104 ~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE----- 178 (257)
T PRK10619 104 WSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDE----- 178 (257)
T ss_pred CCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC-----
Confidence 0122222211 11222333332 245677899999999999998 8999999999
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 347 SSRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 347 ~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
|++++|+..+..+.++|.++...+.
T Consensus 179 -----Pt~~LD~~~~~~l~~~l~~l~~~g~ 203 (257)
T PRK10619 179 -----PTSALDPELVGEVLRIMQQLAEEGK 203 (257)
T ss_pred -----CcccCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999865444
No 220
>KOG0744|consensus
Probab=99.55 E-value=2.5e-15 Score=136.57 Aligned_cols=144 Identities=25% Similarity=0.354 Sum_probs=102.9
Q ss_pred CcccccCcHHHHHHHHHHHhccccCchhhh-hcCCCCCcceeEeCCCCCchHHHHHHHhhhcC---------ceEEEecc
Q psy6098 209 TYEMVGGLDNQIKEIKEVIELPVKHPELFD-ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---------CTFIRVSG 278 (378)
Q Consensus 209 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~---------~~~i~~~~ 278 (378)
-|+.++--.+.|+++..+....+...+... .--|..++.++|+||||||||+|+|++|+.+. ...|.++.
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 366776667778888776554333221111 11244566799999999999999999998764 23899999
Q ss_pred CcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCC-
Q psy6098 279 SELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGD- 357 (378)
Q Consensus 279 ~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d- 357 (378)
+.++++|.+|+.+.|.++|+.-. .+.- -...--.++|||+++|+..|....++-.
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~--ELv~----------------------d~~~lVfvLIDEVESLa~aR~s~~S~~Ep 275 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQ--ELVE----------------------DRGNLVFVLIDEVESLAAARTSASSRNEP 275 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHH--HHHh----------------------CCCcEEEEEeHHHHHHHHHHHhhhcCCCC
Confidence 99999999999999999998652 1100 0012235678999999998866555444
Q ss_pred hHHHHHHHHHHHhccCCCC
Q psy6098 358 SEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~~~~ 376 (378)
..+.|.++.+|+|||....
T Consensus 276 sDaIRvVNalLTQlDrlK~ 294 (423)
T KOG0744|consen 276 SDAIRVVNALLTQLDRLKR 294 (423)
T ss_pred chHHHHHHHHHHHHHHhcc
Confidence 3678999999999998653
No 221
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=7e-15 Score=137.86 Aligned_cols=126 Identities=13% Similarity=0.097 Sum_probs=92.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc---------------cccchh------HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ---------------KFIGEG------SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~---------------~~~~~~------~~~v~ 294 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+. ..++.
T Consensus 30 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 109 (289)
T PRK13645 30 TSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIE 109 (289)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHH
Confidence 46788999999999999999999999999998765 67776644310 021111 12344
Q ss_pred HHHHHhh-----------------hhhhhh-ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCC
Q psy6098 295 ELFVMAS-----------------LKKLAF-AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGS 354 (378)
Q Consensus 295 ~~~~~a~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~ 354 (378)
+.+.... +..+.+ .......+..+|+|++|++.++++ ..|+||+||| |++
T Consensus 110 enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDE----------Pt~ 179 (289)
T PRK13645 110 KDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDE----------PTG 179 (289)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC----------Ccc
Confidence 4332211 111222 123445677899999999999998 8999999999 999
Q ss_pred CCChHHHHHHHHHHHhccC
Q psy6098 355 GGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 355 ~~d~~~~~~~~~lL~~l~~ 373 (378)
++|+..+..+.++|.++..
T Consensus 180 ~LD~~~~~~l~~~l~~~~~ 198 (289)
T PRK13645 180 GLDPKGEEDFINLFERLNK 198 (289)
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 9999999999999988753
No 222
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.55 E-value=1.3e-15 Score=129.87 Aligned_cols=128 Identities=18% Similarity=0.171 Sum_probs=98.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc-----------ccchhH---------HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK-----------FIGEGS---------RMVRE 295 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~-----------~~~~~~---------~~v~~ 295 (378)
-++.+.+|+.++|.||||+||||..-++.|+..++ .|.+++.++... |+.+-. .++..
T Consensus 23 Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~ 102 (243)
T COG1137 23 VSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMA 102 (243)
T ss_pred eeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHH
Confidence 46789999999999999999999999999999987 899998887332 222111 12211
Q ss_pred HHHH---------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 296 LFVM---------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 296 ~~~~---------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
+++. +.+..+.+.+........||+|++.|+++||+ ..|..++||| |++|.||
T Consensus 103 vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDE----------PFAGVDP 172 (243)
T COG1137 103 VLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDE----------PFAGVDP 172 (243)
T ss_pred HHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecC----------CccCCCc
Confidence 1111 11333445556666677899999999999998 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccCCC
Q psy6098 359 EVQRTMLELLNQLDGFE 375 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~~ 375 (378)
-+...+-+++..|.+.|
T Consensus 173 iaV~dIq~iI~~L~~rg 189 (243)
T COG1137 173 IAVIDIQRIIKHLKDRG 189 (243)
T ss_pred hhHHHHHHHHHHHHhCC
Confidence 99989999988887654
No 223
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.55 E-value=7.3e-15 Score=135.07 Aligned_cols=126 Identities=21% Similarity=0.285 Sum_probs=92.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------------------c---ccchh---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------------------K---FIGEG--- 289 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------------------~---~~~~~--- 289 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.++ .|.+++.++.. . |+.+.
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (252)
T TIGR03005 19 LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNL 98 (252)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCccc
Confidence 46789999999999999999999999999998765 67776644311 0 11110
Q ss_pred --HHHHHHHHHH------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccC
Q psy6098 290 --SRMVRELFVM------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGS 347 (378)
Q Consensus 290 --~~~v~~~~~~------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~ 347 (378)
..++.+.+.. ..++.+.+.......+..+|.|++|+++++++ ..|.+|++||
T Consensus 99 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE------ 172 (252)
T TIGR03005 99 FPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDE------ 172 (252)
T ss_pred CCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeC------
Confidence 1122222211 11223333444455677899999999999998 8999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 348 SRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 348 ~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 173 ----P~~~LD~~~~~~l~~~l~~~~~ 194 (252)
T TIGR03005 173 ----VTSALDPELVGEVLNVIRRLAS 194 (252)
T ss_pred ----CcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998753
No 224
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=5.8e-15 Score=132.36 Aligned_cols=124 Identities=22% Similarity=0.273 Sum_probs=90.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----------c---ccchh-----HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----------K---FIGEG-----SRMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----------~---~~~~~-----~~~v~~~ 296 (378)
-++.+.+ +.++|.||||+|||||+++|+|.+.++ .|.+++.++.. . |+.+. ..++.+.
T Consensus 17 vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 95 (214)
T cd03297 17 IDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVREN 95 (214)
T ss_pred ceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHH
Confidence 4678889 999999999999999999999998765 66676643310 0 11110 0112222
Q ss_pred HHH---------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 297 FVM---------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 297 ~~~---------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
+.. ..++.+.+.......+..+|+|++|++.++++ ..|++++||| |++++|+.
T Consensus 96 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE----------Pt~~LD~~ 165 (214)
T cd03297 96 LAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDE----------PFSALDRA 165 (214)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC----------CcccCCHH
Confidence 111 11233333444456778899999999999998 8999999999 99999999
Q ss_pred HHHHHHHHHHhcc
Q psy6098 360 VQRTMLELLNQLD 372 (378)
Q Consensus 360 ~~~~~~~lL~~l~ 372 (378)
.+..+.++|.++.
T Consensus 166 ~~~~l~~~l~~~~ 178 (214)
T cd03297 166 LRLQLLPELKQIK 178 (214)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998874
No 225
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=7.8e-15 Score=139.09 Aligned_cols=130 Identities=16% Similarity=0.126 Sum_probs=94.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------------------------cccchh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------------------------KFIGEG 289 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------------------------~~~~~~ 289 (378)
-++.+.+|+.++|+||||||||||+++|+|++.+. .|.+++.++.+ .|+.+.
T Consensus 45 vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~ 124 (320)
T PRK13631 45 ISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQF 124 (320)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEEC
Confidence 46788999999999999999999999999998875 77777533211 011111
Q ss_pred ------HHHHHHHHHHh-----------------hhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCc
Q psy6098 290 ------SRMVRELFVMA-----------------SLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEID 343 (378)
Q Consensus 290 ------~~~v~~~~~~a-----------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid 343 (378)
..++.+.+... .+..+.+. ......+..+|+|++|+++++++ ..|.||+|||
T Consensus 125 ~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDE-- 202 (320)
T PRK13631 125 PEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDE-- 202 (320)
T ss_pred chhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC--
Confidence 11333332211 12222332 23455677899999999999999 8999999999
Q ss_pred cccCCCCCCCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 344 SIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 344 ~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
|++++|+..+..+.++|.++...+.|
T Consensus 203 --------PtsgLD~~~~~~l~~~L~~l~~~g~T 228 (320)
T PRK13631 203 --------PTAGLDPKGEHEMMQLILDAKANNKT 228 (320)
T ss_pred --------CccCCCHHHHHHHHHHHHHHHHCCCE
Confidence 99999999999999999987544443
No 226
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.55 E-value=6.1e-15 Score=132.11 Aligned_cols=125 Identities=23% Similarity=0.221 Sum_probs=92.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----c---ccchh-----HHHHHHHHH----
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----K---FIGEG-----SRMVRELFV---- 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----~---~~~~~-----~~~v~~~~~---- 298 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+.
T Consensus 17 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~ 96 (213)
T TIGR01277 17 FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLH 96 (213)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhh
Confidence 46889999999999999999999999999998765 67777654321 0 11100 011111111
Q ss_pred -------------HhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 299 -------------MASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 299 -------------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
...++.+.+.......+..+|.|++|++.++++ ..|+|+++|| |++++|+..+..
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE----------Pt~~LD~~~~~~ 166 (213)
T TIGR01277 97 PGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDE----------PFSALDPLLREE 166 (213)
T ss_pred ccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC----------CCccCCHHHHHH
Confidence 011333344444566677899999999999998 8999999999 999999999999
Q ss_pred HHHHHHhcc
Q psy6098 364 MLELLNQLD 372 (378)
Q Consensus 364 ~~~lL~~l~ 372 (378)
+.++|.++.
T Consensus 167 ~~~~l~~~~ 175 (213)
T TIGR01277 167 MLALVKQLC 175 (213)
T ss_pred HHHHHHHHH
Confidence 999999875
No 227
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=2.4e-15 Score=130.95 Aligned_cols=120 Identities=26% Similarity=0.303 Sum_probs=85.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccC---ch
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHH---PL 312 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~---~~ 312 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++... . ......+. .+..+..... ..
T Consensus 19 i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~-~~~~~~~~-----~i~~~~q~~~~~~~~ 91 (178)
T cd03229 19 VSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDL-E-DELPPLRR-----RIGMVFQDFALFPHL 91 (178)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccc-c-hhHHHHhh-----cEEEEecCCccCCCC
Confidence 36788999999999999999999999999998875 788877654321 0 00000100 0000000000 00
Q ss_pred hhhh---H-hhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCC
Q psy6098 313 LFWS---L-LTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGF 374 (378)
Q Consensus 313 ~~~~---~-~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~ 374 (378)
.... . +|.|++|++.++++ ..|.++++|| |++++|+..+..+.++|.++...
T Consensus 92 t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDE----------P~~~LD~~~~~~l~~~l~~~~~~ 149 (178)
T cd03229 92 TVLENIALGLSGGQQQRVALARALAMDPDVLLLDE----------PTSALDPITRREVRALLKSLQAQ 149 (178)
T ss_pred CHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHHh
Confidence 0011 1 99999999999998 8999999999 99999999999999999987653
No 228
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=7.8e-15 Score=133.17 Aligned_cols=126 Identities=19% Similarity=0.220 Sum_probs=92.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----c---ccchh-----HHHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----K---FIGEG-----SRMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----~---~~~~~-----~~~v~~~~~~--- 299 (378)
-+|.+.+|+.++|.||||+|||||+++|+|...+. .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 18 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 97 (232)
T PRK10771 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLN 97 (232)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccc
Confidence 47889999999999999999999999999998765 77777654321 0 11110 0122222211
Q ss_pred --------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 300 --------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 300 --------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
..++.+.+.......+..+|+|++|++.++++ ..|++++||| |++++|+..+..
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE----------P~~gLD~~~~~~ 167 (232)
T PRK10771 98 PGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDE----------PFSALDPALRQE 167 (232)
T ss_pred cccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC----------CcccCCHHHHHH
Confidence 01223334444566677899999999999998 8999999999 999999999999
Q ss_pred HHHHHHhccC
Q psy6098 364 MLELLNQLDG 373 (378)
Q Consensus 364 ~~~lL~~l~~ 373 (378)
+.++|.++..
T Consensus 168 ~~~~l~~~~~ 177 (232)
T PRK10771 168 MLTLVSQVCQ 177 (232)
T ss_pred HHHHHHHHHH
Confidence 9999988743
No 229
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=1.1e-14 Score=128.33 Aligned_cols=117 Identities=25% Similarity=0.303 Sum_probs=87.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC--ce--EEEeccCcccc---c---ccch-----hHHHHHHHHHHhhh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE--CT--FIRVSGSELVQ---K---FIGE-----GSRMVRELFVMASL 302 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~--~~--~i~~~~~~l~~---~---~~~~-----~~~~v~~~~~~a~~ 302 (378)
-++.+.+|+.++|.||||+|||||+++|+|... +. .+.+++.++.. . |+.+ ...++++.+..+..
T Consensus 26 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~ 105 (192)
T cd03232 26 ISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSAL 105 (192)
T ss_pred cEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHH
Confidence 357889999999999999999999999999753 22 77777765421 0 1111 11234444432210
Q ss_pred hhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 303 KKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
...+|+|++|++.++++ ..|+|+++|| |++++|+..+..+.++|.++...+.
T Consensus 106 ------------~~~LSgGe~qrv~la~al~~~p~vlllDE----------P~~~LD~~~~~~l~~~l~~~~~~~~ 159 (192)
T cd03232 106 ------------LRGLSVEQRKRLTIGVELAAKPSILFLDE----------PTSGLDSQAAYNIVRFLKKLADSGQ 159 (192)
T ss_pred ------------HhcCCHHHhHHHHHHHHHhcCCcEEEEeC----------CCcCCCHHHHHHHHHHHHHHHHcCC
Confidence 11899999999999998 8999999999 9999999999999999998864443
No 230
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=6.4e-15 Score=136.43 Aligned_cols=126 Identities=19% Similarity=0.192 Sum_probs=91.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------cccch-----hHHHHHHHHHH-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------KFIGE-----GSRMVRELFVM- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~~~~~-----~~~~v~~~~~~- 299 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+ ...++.+.+..
T Consensus 30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (265)
T PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIG 109 (265)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhC
Confidence 46788999999999999999999999999998764 77777644311 01111 00122222211
Q ss_pred --------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 300 --------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 300 --------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
..+..+.+.......+..+|+|++|++.++++ ..|+||+||| |++++|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE----------Pt~~LD 179 (265)
T PRK10575 110 RYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDE----------PTSALD 179 (265)
T ss_pred cccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC----------CcccCC
Confidence 11222333334455667899999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccC
Q psy6098 358 SEVQRTMLELLNQLDG 373 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~ 373 (378)
+..++.+.++|.++..
T Consensus 180 ~~~~~~~~~~l~~l~~ 195 (265)
T PRK10575 180 IAHQVDVLALVHRLSQ 195 (265)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998843
No 231
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.54 E-value=8.3e-15 Score=135.82 Aligned_cols=126 Identities=17% Similarity=0.277 Sum_probs=91.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------c---ccchhH-------HHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------K---FIGEGS-------RMVRELFV 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~---~~~~~~-------~~v~~~~~ 298 (378)
-++.+.+|+.++|+||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+.. .++.+.+.
T Consensus 32 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~ 111 (267)
T PRK15112 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILD 111 (267)
T ss_pred eeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHH
Confidence 46789999999999999999999999999999875 77777654321 0 111110 11222221
Q ss_pred H------------------hhhhhhhh-ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 299 M------------------ASLKKLAF-AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 299 ~------------------a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
. ..++.+.+ .......+..+|.|++|+++++++ ..|.||+||| |++++|
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE----------Pt~~LD 181 (267)
T PRK15112 112 FPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADE----------ALASLD 181 (267)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcC----------CcccCC
Confidence 1 01222223 123344567899999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccC
Q psy6098 358 SEVQRTMLELLNQLDG 373 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~ 373 (378)
+..+..+.++|.++..
T Consensus 182 ~~~~~~l~~~l~~~~~ 197 (267)
T PRK15112 182 MSMRSQLINLMLELQE 197 (267)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998753
No 232
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.54 E-value=9.2e-15 Score=132.17 Aligned_cols=129 Identities=23% Similarity=0.254 Sum_probs=91.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC---ce--EEEeccCcccc----c---ccch-----hHHHHHHHHHHh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---CT--FIRVSGSELVQ----K---FIGE-----GSRMVRELFVMA 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~---~~--~i~~~~~~l~~----~---~~~~-----~~~~v~~~~~~a 300 (378)
.++.+.+|+.++|+||||+|||||+++|+|.+. +. .|.+++.++.. . |+.+ ...++.+.+..+
T Consensus 26 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 105 (226)
T cd03234 26 VSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYT 105 (226)
T ss_pred ceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHH
Confidence 367899999999999999999999999999987 44 67776654310 0 1110 011223322211
Q ss_pred ---------------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 301 ---------------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 301 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
.++.+.+.......+..+|.|++|++.++++ ..|.++++|| |++++|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDE----------P~~gLD 175 (226)
T cd03234 106 AILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDE----------PTSGLD 175 (226)
T ss_pred HHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeC----------CCcCCC
Confidence 1122222333344567899999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccCCCC
Q psy6098 358 SEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~~~~ 376 (378)
+..+..+.++|.++...+.
T Consensus 176 ~~~~~~~~~~l~~~~~~~~ 194 (226)
T cd03234 176 SFTALNLVSTLSQLARRNR 194 (226)
T ss_pred HHHHHHHHHHHHHHHHCCC
Confidence 9999999999998754443
No 233
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=9.4e-15 Score=136.99 Aligned_cols=126 Identities=15% Similarity=0.145 Sum_probs=94.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------------cccchh------HHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------------KFIGEG------SRMVRE 295 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------------~~~~~~------~~~v~~ 295 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+. ..++.+
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e 105 (290)
T PRK13634 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEK 105 (290)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHH
Confidence 46789999999999999999999999999998876 78887754421 122211 123444
Q ss_pred HHHHh-----------------hhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCC
Q psy6098 296 LFVMA-----------------SLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSG 355 (378)
Q Consensus 296 ~~~~a-----------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~ 355 (378)
.+... .++.+.+. ......+..+|.|++|++.++++ ..|.|||||| |+++
T Consensus 106 ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDE----------Pt~~ 175 (290)
T PRK13634 106 DICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDE----------PTAG 175 (290)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC----------Cccc
Confidence 33221 12223333 23456778999999999999998 9999999999 9999
Q ss_pred CChHHHHHHHHHHHhccC
Q psy6098 356 GDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 356 ~d~~~~~~~~~lL~~l~~ 373 (378)
+|+..+..+.++|.++..
T Consensus 176 LD~~~~~~l~~~L~~l~~ 193 (290)
T PRK13634 176 LDPKGRKEMMEMFYKLHK 193 (290)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999998853
No 234
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.54 E-value=1.4e-14 Score=131.85 Aligned_cols=126 Identities=20% Similarity=0.245 Sum_probs=89.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------c---ccchh----HHHHHHHHHHh-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------K---FIGEG----SRMVRELFVMA- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~---~~~~~----~~~v~~~~~~a- 300 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+...
T Consensus 21 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~ 100 (237)
T cd03252 21 ISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALAD 100 (237)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccC
Confidence 36788999999999999999999999999998765 77777754311 0 11110 01222222210
Q ss_pred ---------------hhhh----h--hhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 301 ---------------SLKK----L--AFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 301 ---------------~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
.+.. + .........+..+|+|++|++.++++ ..|++|+||| |++++|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE----------P~~~LD 170 (237)
T cd03252 101 PGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDE----------ATSALD 170 (237)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC----------CcccCC
Confidence 0000 0 01111233567899999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccC
Q psy6098 358 SEVQRTMLELLNQLDG 373 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~ 373 (378)
+..+..+.++|.++..
T Consensus 171 ~~~~~~l~~~l~~~~~ 186 (237)
T cd03252 171 YESEHAIMRNMHDICA 186 (237)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999998853
No 235
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=7.9e-15 Score=136.68 Aligned_cols=126 Identities=18% Similarity=0.223 Sum_probs=93.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------cccchh------HHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------KFIGEG------SRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~~~~~~------~~~v~~~~~~ 299 (378)
-+|.+.+|+.++|+||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+. ..++.+.+..
T Consensus 23 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~ 102 (277)
T PRK13652 23 INFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAF 102 (277)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHh
Confidence 46788999999999999999999999999998876 77777754421 011111 1123333321
Q ss_pred h-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 300 A-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 300 a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
. .+..+.+.......+..+|.|++|++.++++ ..|.||+||| |++++|+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDE----------Pt~gLD~~~ 172 (277)
T PRK13652 103 GPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDE----------PTAGLDPQG 172 (277)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC----------CcccCCHHH
Confidence 1 1222233444455677899999999999998 8999999999 999999999
Q ss_pred HHHHHHHHHhccC
Q psy6098 361 QRTMLELLNQLDG 373 (378)
Q Consensus 361 ~~~~~~lL~~l~~ 373 (378)
+..+.++|.++..
T Consensus 173 ~~~l~~~l~~l~~ 185 (277)
T PRK13652 173 VKELIDFLNDLPE 185 (277)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998754
No 236
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.54 E-value=1.1e-14 Score=133.55 Aligned_cols=126 Identities=25% Similarity=0.292 Sum_probs=90.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCc-c---cccc-c-chhHHHHHHHHH----------H
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSE-L---VQKF-I-GEGSRMVRELFV----------M 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~-l---~~~~-~-~~~~~~v~~~~~----------~ 299 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.. + ++.. . ..-..++.+.+. .
T Consensus 23 vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 102 (251)
T PRK09544 23 VSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDIL 102 (251)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHH
Confidence 46789999999999999999999999999998765 56665421 1 1110 0 000012222111 1
Q ss_pred hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 300 ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 300 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
..++.+.+.......+..+|.|++|+++++++ ..|.+++||| |++++|+..+..+.++|.++..
T Consensus 103 ~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE----------Pt~~LD~~~~~~l~~~L~~~~~ 168 (251)
T PRK09544 103 PALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDE----------PTQGVDVNGQVALYDLIDQLRR 168 (251)
T ss_pred HHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCcCCCHHHHHHHHHHHHHHHH
Confidence 11333344444556788999999999999998 8999999999 9999999999999999988743
No 237
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.54 E-value=7.1e-15 Score=136.13 Aligned_cols=126 Identities=20% Similarity=0.257 Sum_probs=92.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------c---ccch-----hHHHHHHHHHH-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------K---FIGE-----GSRMVRELFVM- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~---~~~~-----~~~~v~~~~~~- 299 (378)
.++.+.+|+.++|+||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+ ...++.+.+..
T Consensus 26 isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~ 105 (265)
T PRK10253 26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARG 105 (265)
T ss_pred cceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhC
Confidence 46788899999999999999999999999998765 77777654311 0 1110 00122222211
Q ss_pred --------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 300 --------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 300 --------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
..++.+.+.......+..+|.|++|++.++++ ..|+++++|| |++++|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE----------Pt~gLD 175 (265)
T PRK10253 106 RYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDE----------PTTWLD 175 (265)
T ss_pred cccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeC----------ccccCC
Confidence 11222333444566778999999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccC
Q psy6098 358 SEVQRTMLELLNQLDG 373 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~ 373 (378)
+..+..+.++|.++..
T Consensus 176 ~~~~~~l~~~L~~l~~ 191 (265)
T PRK10253 176 ISHQIDLLELLSELNR 191 (265)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998753
No 238
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.54 E-value=1.3e-14 Score=129.49 Aligned_cols=127 Identities=20% Similarity=0.278 Sum_probs=94.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc---cc-------ch--------hH-------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK---FI-------GE--------GS------- 290 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~---~~-------~~--------~~------- 290 (378)
-+|.+++|++++|+||||+||||++|+++|.+.|. .|.++|.+-..+ |+ |+ ..
T Consensus 43 isf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~ 122 (325)
T COG4586 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVL 122 (325)
T ss_pred eeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHH
Confidence 47899999999999999999999999999999987 899988755331 11 00 00
Q ss_pred HHHHHH----HHHh---hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHH
Q psy6098 291 RMVREL----FVMA---SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 361 (378)
Q Consensus 291 ~~v~~~----~~~a---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~ 361 (378)
+.++++ |..- ..+.+.++.......-.+|.|++.+..++.+ |+|.|+|||| ||-|+|..++
T Consensus 123 ~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDE----------pTvgLDV~aq 192 (325)
T COG4586 123 KLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDE----------PTVGLDVNAQ 192 (325)
T ss_pred HHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecC----------CccCcchhHH
Confidence 011111 1100 0122234455666677899999999988887 9999999999 9999999999
Q ss_pred HHHHHHHHhccCC
Q psy6098 362 RTMLELLNQLDGF 374 (378)
Q Consensus 362 ~~~~~lL~~l~~~ 374 (378)
..+.++|++....
T Consensus 193 ~~ir~Flke~n~~ 205 (325)
T COG4586 193 ANIREFLKEYNEE 205 (325)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987643
No 239
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=1.1e-14 Score=135.25 Aligned_cols=126 Identities=17% Similarity=0.207 Sum_probs=92.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------cccchhHH------HHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------KFIGEGSR------MVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~~~~~~~~------~v~~~~~~ 299 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+... ++.+.+..
T Consensus 28 isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~ 107 (269)
T PRK13648 28 VSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAF 107 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHh
Confidence 46788999999999999999999999999998765 78887765421 01111110 11111110
Q ss_pred -----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 300 -----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 300 -----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
..++.+.+.......+..+|.|++|++.++++ ..|++|+||| |++++|+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE----------Pt~~LD~~~ 177 (269)
T PRK13648 108 GLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDE----------ATSMLDPDA 177 (269)
T ss_pred hHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC----------CcccCCHHH
Confidence 11223333444455677899999999999999 8999999999 999999999
Q ss_pred HHHHHHHHHhccC
Q psy6098 361 QRTMLELLNQLDG 373 (378)
Q Consensus 361 ~~~~~~lL~~l~~ 373 (378)
+..+.++|.++..
T Consensus 178 ~~~l~~~L~~~~~ 190 (269)
T PRK13648 178 RQNLLDLVRKVKS 190 (269)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998753
No 240
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=1.1e-14 Score=132.33 Aligned_cols=126 Identities=23% Similarity=0.231 Sum_probs=93.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----c---ccchh-----HHHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----K---FIGEG-----SRMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----~---~~~~~-----~~~v~~~~~~--- 299 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 19 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~ 98 (232)
T cd03300 19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLR 98 (232)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHH
Confidence 45778999999999999999999999999998875 67776654321 0 11100 0112222111
Q ss_pred --------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 300 --------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 300 --------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
..++.+.+.......+..+|.|++|++.++++ ..|++++||| |++++|+..+..
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE----------P~~gLD~~~~~~ 168 (232)
T cd03300 99 LKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE----------PLGALDLKLRKD 168 (232)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------CcccCCHHHHHH
Confidence 11333344455566778999999999999998 8999999999 999999999999
Q ss_pred HHHHHHhccC
Q psy6098 364 MLELLNQLDG 373 (378)
Q Consensus 364 ~~~lL~~l~~ 373 (378)
+.++|.++..
T Consensus 169 l~~~l~~~~~ 178 (232)
T cd03300 169 MQLELKRLQK 178 (232)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 241
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1e-14 Score=135.61 Aligned_cols=129 Identities=19% Similarity=0.248 Sum_probs=92.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----c---ccchh-------HHHHHHHH----
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----K---FIGEG-------SRMVRELF---- 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----~---~~~~~-------~~~v~~~~---- 297 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ...+.+.+
T Consensus 26 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~ 105 (272)
T PRK15056 26 ASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGR 105 (272)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccc
Confidence 46788999999999999999999999999998765 67666643210 0 11100 00111110
Q ss_pred -----------------HHhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 298 -----------------VMASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 298 -----------------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
....++.+.+.......+..+|+|++|++.++++ .+|.|+++|| |++++|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDE----------Pt~~LD~ 175 (272)
T PRK15056 106 YGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDE----------PFTGVDV 175 (272)
T ss_pred ccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCccCCH
Confidence 0111333344444556778899999999999998 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccCCCC
Q psy6098 359 EVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~~~ 376 (378)
..+..+.++|.++...+.
T Consensus 176 ~~~~~l~~~L~~~~~~g~ 193 (272)
T PRK15056 176 KTEARIISLLRELRDEGK 193 (272)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 999999999998864443
No 242
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.54 E-value=1e-14 Score=140.60 Aligned_cols=126 Identities=21% Similarity=0.180 Sum_probs=94.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccC----cccc-----------c---ccc-----hhHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGS----ELVQ-----------K---FIG-----EGSRM 292 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~----~l~~-----------~---~~~-----~~~~~ 292 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++. ++.. . |+. ....+
T Consensus 43 vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~T 122 (382)
T TIGR03415 43 ASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLT 122 (382)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCc
Confidence 46788999999999999999999999999999876 7777763 2210 0 110 01112
Q ss_pred HHHHHHH-----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCC
Q psy6098 293 VRELFVM-----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESG 353 (378)
Q Consensus 293 v~~~~~~-----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~ 353 (378)
+.+++.. ..++.+.+.......+..+|+|++|++.++|+ ..|.||++|| |+
T Consensus 123 v~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDE----------Pt 192 (382)
T TIGR03415 123 VEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDE----------PF 192 (382)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC----------CC
Confidence 2222221 11344455566677788999999999999998 9999999999 99
Q ss_pred CCCChHHHHHHHHHHHhccC
Q psy6098 354 SGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 354 ~~~d~~~~~~~~~lL~~l~~ 373 (378)
+++|+..+..+.++|.++..
T Consensus 193 s~LD~~~r~~l~~~L~~l~~ 212 (382)
T TIGR03415 193 SALDPLIRTQLQDELLELQA 212 (382)
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 243
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.54 E-value=8.2e-15 Score=135.04 Aligned_cols=129 Identities=21% Similarity=0.249 Sum_probs=93.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------cccchh-----HHHHHHHHHH-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------KFIGEG-----SRMVRELFVM- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~~~~~~-----~~~v~~~~~~- 299 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+. ..++.+.+..
T Consensus 20 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 99 (256)
T TIGR03873 20 VDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALG 99 (256)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhc
Confidence 46788899999999999999999999999998765 67777644311 011111 0122222211
Q ss_pred --------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 300 --------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 300 --------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
..++.+.+.......+..+|.|++|++.++++ ..|+|++||| |++++|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE----------Pt~~LD 169 (256)
T TIGR03873 100 RIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDE----------PTNHLD 169 (256)
T ss_pred chhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC----------ccccCC
Confidence 01222333444455677899999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccCCCC
Q psy6098 358 SEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~~~~ 376 (378)
+.....+.++|.++...+.
T Consensus 170 ~~~~~~l~~~l~~~~~~~~ 188 (256)
T TIGR03873 170 VRAQLETLALVRELAATGV 188 (256)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999998864443
No 244
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=1.7e-14 Score=131.11 Aligned_cols=126 Identities=21% Similarity=0.285 Sum_probs=90.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------c---ccchh----HHHHHHHHHHh-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------K---FIGEG----SRMVRELFVMA- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~---~~~~~----~~~v~~~~~~a- 300 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+...
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~ 100 (234)
T cd03251 21 ISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGR 100 (234)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccC
Confidence 46788999999999999999999999999998765 77777654311 0 11110 11333333211
Q ss_pred ---------------hhhh----h--hhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 301 ---------------SLKK----L--AFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 301 ---------------~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
.+.. + .........+..+|.|++|++.++++ ..|++++||| |++++|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDE----------P~~~LD 170 (234)
T cd03251 101 PGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDE----------ATSALD 170 (234)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC----------ccccCC
Confidence 0000 0 11122234566899999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccC
Q psy6098 358 SEVQRTMLELLNQLDG 373 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~ 373 (378)
+..+..+.++|.++..
T Consensus 171 ~~~~~~l~~~l~~~~~ 186 (234)
T cd03251 171 TESERLVQAALERLMK 186 (234)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999998853
No 245
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.54 E-value=7.6e-16 Score=149.03 Aligned_cols=73 Identities=51% Similarity=0.698 Sum_probs=69.1
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSE 80 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~ 80 (378)
++.||||||||++|+++|++++.+|+.+.++++.++|+|+++..++.+|+.|+..+|+ ||||||+|.++..+.
T Consensus 160 LL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~---il~iDEiD~l~~~~~ 232 (364)
T TIGR01242 160 LLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPS---IIFIDEIDAIAAKRT 232 (364)
T ss_pred EEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCc---EEEhhhhhhhccccc
Confidence 6789999999999999999999999999999999999999999999999999998898 999999999987644
No 246
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.54 E-value=3.7e-15 Score=131.38 Aligned_cols=127 Identities=20% Similarity=0.187 Sum_probs=100.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccc-------------------cchhH------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKF-------------------IGEGS------ 290 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~-------------------~~~~~------ 290 (378)
-++.+.+|++++|+||||+||||+++.|+|.++|+ .|.+.+.++.... .+.+.
T Consensus 23 Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~v 102 (250)
T COG0411 23 VSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAV 102 (250)
T ss_pred eeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHH
Confidence 36788999999999999999999999999999998 8999988772210 00000
Q ss_pred ------------------HHHHHHHHHh--hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCC
Q psy6098 291 ------------------RMVRELFVMA--SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSS 348 (378)
Q Consensus 291 ------------------~~v~~~~~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~ 348 (378)
+.-++..+.| .++.+.+....+.....|+.|.+++++++++ ..|.+|+|||
T Consensus 103 a~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDE------- 175 (250)
T COG0411 103 GAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDE------- 175 (250)
T ss_pred HhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecC-------
Confidence 0011111211 2556677888888889999999999999998 8999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhccCC
Q psy6098 349 RIESGSGGDSEVQRTMLELLNQLDGF 374 (378)
Q Consensus 349 r~~~~~~~d~~~~~~~~~lL~~l~~~ 374 (378)
|.+|+.+.....+.+++.++...
T Consensus 176 ---PaAGln~~e~~~l~~~i~~i~~~ 198 (250)
T COG0411 176 ---PAAGLNPEETEELAELIRELRDR 198 (250)
T ss_pred ---ccCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998863
No 247
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.54 E-value=1e-14 Score=147.34 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=97.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------c---ccchh-----HHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------K---FIGEG-----SRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~---~~~~~-----~~~v~~~~~~ 299 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 30 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 109 (510)
T PRK15439 30 IDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILF 109 (510)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhc
Confidence 46788999999999999999999999999998765 77777654311 0 11111 0123332211
Q ss_pred -------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHH
Q psy6098 300 -------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 364 (378)
Q Consensus 300 -------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~ 364 (378)
..+..+.+.......+..||+|++|++.++++ ..|.||+||| |++++|+..+..+
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDE----------Pt~~LD~~~~~~l 179 (510)
T PRK15439 110 GLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE----------PTASLTPAETERL 179 (510)
T ss_pred ccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC----------CCCCCCHHHHHHH
Confidence 12334445556677889999999999999998 8999999999 9999999999999
Q ss_pred HHHHHhccCCCC
Q psy6098 365 LELLNQLDGFEA 376 (378)
Q Consensus 365 ~~lL~~l~~~~~ 376 (378)
.++|.++...+.
T Consensus 180 ~~~l~~~~~~g~ 191 (510)
T PRK15439 180 FSRIRELLAQGV 191 (510)
T ss_pred HHHHHHHHHCCC
Confidence 999998865443
No 248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.54 E-value=1.6e-14 Score=130.58 Aligned_cols=126 Identities=17% Similarity=0.242 Sum_probs=92.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------c---ccch----hHHHHHHHHHHh-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------K---FIGE----GSRMVRELFVMA- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~---~~~~----~~~~v~~~~~~a- 300 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+ ...++.+.+..+
T Consensus 33 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~ 112 (226)
T cd03248 33 VSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGL 112 (226)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhcccc
Confidence 46788999999999999999999999999998765 77777754421 0 1111 111333332211
Q ss_pred -------------------hhhhh--hhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 301 -------------------SLKKL--AFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 301 -------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
.+..+ .+.......+..+|.|++|++.++++ ..|.+|+||| |++++|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE----------Pt~~LD 182 (226)
T cd03248 113 QSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDE----------ATSALD 182 (226)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC----------CcccCC
Confidence 01112 22333455577899999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccC
Q psy6098 358 SEVQRTMLELLNQLDG 373 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~ 373 (378)
+..+..+.++|.++..
T Consensus 183 ~~~~~~l~~~l~~~~~ 198 (226)
T cd03248 183 AESEQQVQQALYDWPE 198 (226)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999998754
No 249
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.54 E-value=1e-14 Score=157.78 Aligned_cols=100 Identities=23% Similarity=0.363 Sum_probs=77.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccc----------cchh------------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKF----------IGEG------------------ 289 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~----------~~~~------------------ 289 (378)
..+|+.++++++|+||||||||.|||++|+..+.++|.++++++++++ +|++
T Consensus 1623 lrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~ 1702 (2281)
T CHL00206 1623 LRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELL 1702 (2281)
T ss_pred HHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhh
Confidence 567889999999999999999999999999999999999999988654 1211
Q ss_pred -------------H--HHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCC
Q psy6098 290 -------------S--RMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGS 354 (378)
Q Consensus 290 -------------~--~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~ 354 (378)
+ ..++.+|+.| ++.+||||||||||+|+.+.
T Consensus 1703 e~~n~~~~~m~~~e~~~rIr~lFelA-----------------------------Rk~SPCIIFIDEIDaL~~~d----- 1748 (2281)
T CHL00206 1703 TMMNALTMDMMPKIDRFYITLQFELA-----------------------------KAMSPCIIWIPNIHDLNVNE----- 1748 (2281)
T ss_pred hhcchhhhhhhhhhhHHHHHHHHHHH-----------------------------HHCCCeEEEEEchhhcCCCc-----
Confidence 1 1244444444 88999999999999998652
Q ss_pred CCChHHHHHHHHHHHhccCCC
Q psy6098 355 GGDSEVQRTMLELLNQLDGFE 375 (378)
Q Consensus 355 ~~d~~~~~~~~~lL~~l~~~~ 375 (378)
+ ....+.++|.+|++.+
T Consensus 1749 ---s-~~ltL~qLLneLDg~~ 1765 (2281)
T CHL00206 1749 ---S-NYLSLGLLVNSLSRDC 1765 (2281)
T ss_pred ---c-ceehHHHHHHHhcccc
Confidence 1 1124678888898763
No 250
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.54 E-value=1.2e-14 Score=125.71 Aligned_cols=117 Identities=18% Similarity=0.103 Sum_probs=85.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCc-cc-c---cccchhHHHHHHHHHHhhhhhhhhcc-Cc
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE-LV-Q---KFIGEGSRMVRELFVMASLKKLAFAH-HP 311 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~-l~-~---~~~~~~~~~v~~~~~~a~~~~~~~~~-~~ 311 (378)
-+|.+.+|+.++|.||||+|||||++++.+. ...+.+.+.. .. . .|+.+ . ..+..+.+.. ..
T Consensus 14 isl~i~~G~~~~l~G~nG~GKSTLl~~il~~--~G~v~~~~~~~~~~~~~~~~~~q-----~-----~~l~~~~L~~~~~ 81 (176)
T cd03238 14 LDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA--SGKARLISFLPKFSRNKLIFIDQ-----L-----QFLIDVGLGYLTL 81 (176)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhhc--CCcEEECCcccccccccEEEEhH-----H-----HHHHHcCCCcccc
Confidence 4678999999999999999999999999642 2244444331 00 0 12222 1 1233344433 35
Q ss_pred hhhhhHhhhhhhhhhccccc--CC--CeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 312 LLFWSLLTILTNTIVCNFRE--HA--PSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~--~~--p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
...+..+|.|++|+++++++ .+ |++++||| |++++|+.....+.++|.++...+.
T Consensus 82 ~~~~~~LSgGq~qrl~laral~~~~~p~llLlDE----------Pt~~LD~~~~~~l~~~l~~~~~~g~ 140 (176)
T cd03238 82 GQKLSTLSGGELQRVKLASELFSEPPGTLFILDE----------PSTGLHQQDINQLLEVIKGLIDLGN 140 (176)
T ss_pred CCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHHhCCC
Confidence 66788999999999999998 67 99999999 9999999999999999988754443
No 251
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=1e-14 Score=136.18 Aligned_cols=126 Identities=19% Similarity=0.198 Sum_probs=93.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------c---ccchhH------HHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------K---FIGEGS------RMVRELFV 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~---~~~~~~------~~v~~~~~ 298 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++..+.. + |+.+.. ..+.+.+.
T Consensus 29 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~ 108 (280)
T PRK13633 29 VNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVA 108 (280)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHH
Confidence 46788999999999999999999999999998875 77777654421 0 111111 11222221
Q ss_pred Hh-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 299 MA-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 299 ~a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
.. .++.+.+.......+..+|.|++|++.++++ ..|.+|+||| |++++|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE----------Pt~gLD~~ 178 (280)
T PRK13633 109 FGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDE----------PTAMLDPS 178 (280)
T ss_pred hhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC----------CcccCCHH
Confidence 11 1222334445556778999999999999998 8999999999 99999999
Q ss_pred HHHHHHHHHHhccC
Q psy6098 360 VQRTMLELLNQLDG 373 (378)
Q Consensus 360 ~~~~~~~lL~~l~~ 373 (378)
.+..+.++|.++..
T Consensus 179 ~~~~l~~~l~~l~~ 192 (280)
T PRK13633 179 GRREVVNTIKELNK 192 (280)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998853
No 252
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=1.1e-14 Score=136.01 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=95.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccc---------c---cccchh------HHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELV---------Q---KFIGEG------SRMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~---------~---~~~~~~------~~~v~~~~ 297 (378)
.+|.+.+|+.++|+||||+|||||+++|+|.+.+. .|.+++.++. . .|+.+. ..++.+.+
T Consensus 25 vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l 104 (283)
T PRK13636 25 ININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDV 104 (283)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHH
Confidence 46788999999999999999999999999998765 7777775441 0 011111 11333333
Q ss_pred HHh-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 298 VMA-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 298 ~~a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
... .++.+.+.......+..+|.|++|++.++++ ..|++|+||| |++++|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDE----------Pt~gLD~ 174 (283)
T PRK13636 105 SFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDE----------PTAGLDP 174 (283)
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC----------CccCCCH
Confidence 211 1233344555667788999999999999999 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccC
Q psy6098 359 EVQRTMLELLNQLDG 373 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~ 373 (378)
..+..+.++|.++..
T Consensus 175 ~~~~~l~~~l~~l~~ 189 (283)
T PRK13636 175 MGVSEIMKLLVEMQK 189 (283)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998854
No 253
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.53 E-value=1.3e-14 Score=134.39 Aligned_cols=126 Identities=25% Similarity=0.270 Sum_probs=91.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------c---ccchhH-------HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------K---FIGEGS-------RMVRE 295 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~---~~~~~~-------~~v~~ 295 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+.. ..+.+
T Consensus 30 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~ 109 (265)
T TIGR02769 30 VSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQ 109 (265)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHH
Confidence 46788999999999999999999999999998765 67777654321 0 111110 11222
Q ss_pred HHHH------------------hhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCC
Q psy6098 296 LFVM------------------ASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGS 354 (378)
Q Consensus 296 ~~~~------------------a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~ 354 (378)
.+.. ..++.+.+. ......+..+|+|++|+++++++ ..|+||+||| |++
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDE----------Pt~ 179 (265)
T TIGR02769 110 IIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDE----------AVS 179 (265)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------Ccc
Confidence 1110 012223332 33456778999999999999998 8999999999 999
Q ss_pred CCChHHHHHHHHHHHhccC
Q psy6098 355 GGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 355 ~~d~~~~~~~~~lL~~l~~ 373 (378)
++|+..+..+.++|.++..
T Consensus 180 ~LD~~~~~~l~~~l~~~~~ 198 (265)
T TIGR02769 180 NLDMVLQAVILELLRKLQQ 198 (265)
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 9999999999999998753
No 254
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=1.1e-14 Score=132.41 Aligned_cols=126 Identities=19% Similarity=0.239 Sum_probs=92.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----c---ccch-----hHHHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----K---FIGE-----GSRMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----~---~~~~-----~~~~v~~~~~~--- 299 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+ ...++.+.+..
T Consensus 18 is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~ 97 (235)
T cd03299 18 VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLK 97 (235)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHH
Confidence 46788999999999999999999999999998875 67777654321 0 0000 00111111111
Q ss_pred --------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 300 --------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 300 --------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
..+..+.+.......+..+|.|++|+++++++ ..|+++++|| |++++|+..+..
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE----------Pt~gLD~~~~~~ 167 (235)
T cd03299 98 KRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDE----------PFSALDVRTKEK 167 (235)
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECC----------CcccCCHHHHHH
Confidence 11233334444556677899999999999998 8999999999 999999999999
Q ss_pred HHHHHHhccC
Q psy6098 364 MLELLNQLDG 373 (378)
Q Consensus 364 ~~~lL~~l~~ 373 (378)
++++|.++..
T Consensus 168 l~~~l~~~~~ 177 (235)
T cd03299 168 LREELKKIRK 177 (235)
T ss_pred HHHHHHHHHH
Confidence 9999998743
No 255
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.3e-14 Score=146.63 Aligned_cols=129 Identities=19% Similarity=0.141 Sum_probs=96.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------c---ccchh-----HHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------K---FIGEG-----SRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~---~~~~~-----~~~v~~~~~~ 299 (378)
-+|.+.+|+.++|.||||+|||||+|+|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 24 vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 103 (510)
T PRK09700 24 VNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYI 103 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhh
Confidence 46788999999999999999999999999998765 77777654311 0 11110 0122222211
Q ss_pred ------------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCC
Q psy6098 300 ------------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESG 353 (378)
Q Consensus 300 ------------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~ 353 (378)
..++.+.+.......+..||+|++|++.++++ ..|.|||||| |+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDE----------Pt 173 (510)
T PRK09700 104 GRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDE----------PT 173 (510)
T ss_pred ccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CC
Confidence 11333344555677788999999999999998 8999999999 99
Q ss_pred CCCChHHHHHHHHHHHhccCCCC
Q psy6098 354 SGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 354 ~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
+++|+..+..+.++|.++...+.
T Consensus 174 ~~LD~~~~~~l~~~l~~l~~~g~ 196 (510)
T PRK09700 174 SSLTNKEVDYLFLIMNQLRKEGT 196 (510)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999865444
No 256
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.53 E-value=1.3e-14 Score=128.69 Aligned_cols=128 Identities=23% Similarity=0.224 Sum_probs=86.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhc--Cce--EEEeccCcccccccchhHH-HHHHHHHHhh-hhhhhhccCc
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--ECT--FIRVSGSELVQKFIGEGSR-MVRELFVMAS-LKKLAFAHHP 311 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~--~~~--~i~~~~~~l~~~~~~~~~~-~v~~~~~~a~-~~~~~~~~~~ 311 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.. .+. .|.+++.++.........+ .+.-+++... ..........
T Consensus 19 is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l 98 (200)
T cd03217 19 VNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL 98 (200)
T ss_pred cceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHH
Confidence 36788999999999999999999999999994 343 7888886553210000000 0000000000 0000000000
Q ss_pred hhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCC
Q psy6098 312 LLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 375 (378)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~ 375 (378)
......+|.|++|++.++++ ..|+++++|| |++++|+..+..+.++|.++...+
T Consensus 99 ~~~~~~LS~G~~qrv~laral~~~p~illlDE----------Pt~~LD~~~~~~l~~~L~~~~~~~ 154 (200)
T cd03217 99 RYVNEGFSGGEKKRNEILQLLLLEPDLAILDE----------PDSGLDIDALRLVAEVINKLREEG 154 (200)
T ss_pred hhccccCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCccCCHHHHHHHHHHHHHHHHCC
Confidence 11235799999999999998 8999999999 999999999999999999885434
No 257
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=2.2e-14 Score=130.50 Aligned_cols=128 Identities=17% Similarity=0.214 Sum_probs=90.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------cccch----hHHHHHHHHHHhh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------KFIGE----GSRMVRELFVMAS 301 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~~~~~----~~~~v~~~~~~a~ 301 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+ ...++.+.+....
T Consensus 20 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~ 99 (236)
T cd03253 20 VSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGR 99 (236)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcC
Confidence 46788999999999999999999999999998765 77777654321 01111 0113333332210
Q ss_pred ----------------hhhh------hhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 302 ----------------LKKL------AFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 302 ----------------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+... .........+..+|.|++|++.++++ ..|.+|+||| |++++|
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDE----------P~~~LD 169 (236)
T cd03253 100 PDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDE----------ATSALD 169 (236)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC----------CcccCC
Confidence 0000 00111222345899999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccCCCC
Q psy6098 358 SEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~~~~ 376 (378)
+..+..+.++|.++.. +.
T Consensus 170 ~~~~~~l~~~l~~~~~-~~ 187 (236)
T cd03253 170 THTEREIQAALRDVSK-GR 187 (236)
T ss_pred HHHHHHHHHHHHHhcC-CC
Confidence 9999999999998865 44
No 258
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.53 E-value=1.2e-14 Score=146.56 Aligned_cols=129 Identities=17% Similarity=0.204 Sum_probs=96.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------c---ccchh-----HHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------K---FIGEG-----SRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~---~~~~~-----~~~v~~~~~~ 299 (378)
-+|.+.+|+.++|+||||+|||||+|+|+|.+.++ .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 23 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 102 (501)
T PRK10762 23 AALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFL 102 (501)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhh
Confidence 46788999999999999999999999999998775 77777654311 0 11111 0122222111
Q ss_pred ---------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCC
Q psy6098 300 ---------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGG 356 (378)
Q Consensus 300 ---------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~ 356 (378)
..++.+.+.......+..+|+|++|++.++++ ..|.|||||| |++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE----------Pt~~L 172 (501)
T PRK10762 103 GREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDE----------PTDAL 172 (501)
T ss_pred ccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CcCCC
Confidence 11333445555677889999999999999998 8999999999 99999
Q ss_pred ChHHHHHHHHHHHhccCCCC
Q psy6098 357 DSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 357 d~~~~~~~~~lL~~l~~~~~ 376 (378)
|+..+..+.++|.++...+.
T Consensus 173 D~~~~~~l~~~l~~l~~~~~ 192 (501)
T PRK10762 173 TDTETESLFRVIRELKSQGR 192 (501)
T ss_pred CHHHHHHHHHHHHHHHHCCC
Confidence 99999999999998865443
No 259
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=2.3e-14 Score=129.76 Aligned_cols=125 Identities=21% Similarity=0.249 Sum_probs=89.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------cccchh----HHHHHHHHHHhh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------KFIGEG----SRMVRELFVMAS 301 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~~~~~~----~~~v~~~~~~a~ 301 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+. ..++.+.+....
T Consensus 22 isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~ 101 (229)
T cd03254 22 INFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGR 101 (229)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccC
Confidence 46788999999999999999999999999998765 78777754421 011111 113333332210
Q ss_pred -----------hhhhh-----------hccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 302 -----------LKKLA-----------FAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 302 -----------~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+..+. ........+..+|.|++|++.++++ ..|++++||| |++++|
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDE----------P~~~LD 171 (229)
T cd03254 102 PNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDE----------ATSNID 171 (229)
T ss_pred CCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC----------ccccCC
Confidence 00000 1111223356899999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhcc
Q psy6098 358 SEVQRTMLELLNQLD 372 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~ 372 (378)
+..+..+.++|.++.
T Consensus 172 ~~~~~~l~~~l~~~~ 186 (229)
T cd03254 172 TETEKLIQEALEKLM 186 (229)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999885
No 260
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.53 E-value=1.1e-14 Score=134.56 Aligned_cols=126 Identities=23% Similarity=0.291 Sum_probs=92.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-----eEEEeccCcccc---------------cccchh-----HHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-----TFIRVSGSELVQ---------------KFIGEG-----SRM 292 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-----~~i~~~~~~l~~---------------~~~~~~-----~~~ 292 (378)
.+|.+.+|+.++|+||||+|||||+++|+|.+.+ ..|.+++.++.. .|+.+. ..+
T Consensus 23 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 102 (262)
T PRK09984 23 VDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLS 102 (262)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCc
Confidence 4678899999999999999999999999999875 377777754321 011110 012
Q ss_pred HHHHHHH-------------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccc
Q psy6098 293 VRELFVM-------------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSI 345 (378)
Q Consensus 293 v~~~~~~-------------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~ 345 (378)
+.+.+.. ..++.+.+.......+..+|.|++|++.++++ ..|.||+|||
T Consensus 103 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---- 178 (262)
T PRK09984 103 VLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADE---- 178 (262)
T ss_pred HHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecC----
Confidence 2222211 11222333344455677899999999999998 8999999999
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 346 GSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 346 ~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 179 ------Pt~~LD~~~~~~l~~~l~~~~~ 200 (262)
T PRK09984 179 ------PIASLDPESARIVMDTLRDINQ 200 (262)
T ss_pred ------ccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998853
No 261
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.53 E-value=1.3e-14 Score=131.46 Aligned_cols=126 Identities=20% Similarity=0.158 Sum_probs=90.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc----e--EEEeccCcccc-----c---ccchhH-------HHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC----T--FIRVSGSELVQ-----K---FIGEGS-------RMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~----~--~i~~~~~~l~~-----~---~~~~~~-------~~v~~~ 296 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+ . .|.+++.++.. . |+.+.. ..+.+.
T Consensus 5 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~ 84 (230)
T TIGR02770 5 LNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNH 84 (230)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHH
Confidence 3678899999999999999999999999999986 3 77777754311 1 111110 011111
Q ss_pred HHH-----------------hhhhhhhhc---cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCC
Q psy6098 297 FVM-----------------ASLKKLAFA---HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGS 354 (378)
Q Consensus 297 ~~~-----------------a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~ 354 (378)
+.. ..++.+.+. ......+..+|.|++|+++++++ .+|.|++||| |++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE----------Pt~ 154 (230)
T TIGR02770 85 AIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE----------PTT 154 (230)
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC----------Ccc
Confidence 100 012222222 23455677899999999999998 8999999999 999
Q ss_pred CCChHHHHHHHHHHHhccC
Q psy6098 355 GGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 355 ~~d~~~~~~~~~lL~~l~~ 373 (378)
++|+..+..+.++|.++..
T Consensus 155 ~LD~~~~~~l~~~l~~~~~ 173 (230)
T TIGR02770 155 DLDVVNQARVLKLLRELRQ 173 (230)
T ss_pred ccCHHHHHHHHHHHHHHHH
Confidence 9999999999999998753
No 262
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.53 E-value=2.6e-14 Score=128.74 Aligned_cols=126 Identities=19% Similarity=0.236 Sum_probs=89.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------c---ccchh----HHHHHHHH----
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------K---FIGEG----SRMVRELF---- 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~---~~~~~----~~~v~~~~---- 297 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+
T Consensus 23 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~ 102 (221)
T cd03244 23 ISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFG 102 (221)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCC
Confidence 46789999999999999999999999999998765 67777654311 0 11110 01222221
Q ss_pred -----------HHhhhhhh------hhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 298 -----------VMASLKKL------AFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 298 -----------~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
....+... .........+..+|.|++|++.++++ ..|++++||| |++++|+
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE----------P~~~LD~ 172 (221)
T cd03244 103 EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDE----------ATASVDP 172 (221)
T ss_pred CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC----------ccccCCH
Confidence 11111110 01111224567899999999999998 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccC
Q psy6098 359 EVQRTMLELLNQLDG 373 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~ 373 (378)
..+..+.++|.++..
T Consensus 173 ~~~~~l~~~l~~~~~ 187 (221)
T cd03244 173 ETDALIQKTIREAFK 187 (221)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998753
No 263
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.53 E-value=1.3e-14 Score=146.13 Aligned_cols=129 Identities=19% Similarity=0.167 Sum_probs=95.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------c---ccchh-------------HHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------K---FIGEG-------------SRM 292 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~---~~~~~-------------~~~ 292 (378)
-++.+.+|+.++|.||||+|||||+|+|+|.+.++ .|.+++.++.. . |+.+. ...
T Consensus 22 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~ 101 (490)
T PRK10938 22 PSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRT 101 (490)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhcccc
Confidence 46788999999999999999999999999998765 66665543311 0 11100 112
Q ss_pred HHHHHH---------HhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHH
Q psy6098 293 VRELFV---------MASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 361 (378)
Q Consensus 293 v~~~~~---------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~ 361 (378)
+.+.+. ...+..+.+.......+..+|+|++|++.++++ ..|.+||||| |++++|+..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE----------Pt~~LD~~~~ 171 (490)
T PRK10938 102 TAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDE----------PFDGLDVASR 171 (490)
T ss_pred HHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC----------CcccCCHHHH
Confidence 333221 112344445555677888999999999999998 8999999999 9999999999
Q ss_pred HHHHHHHHhccCCCC
Q psy6098 362 RTMLELLNQLDGFEA 376 (378)
Q Consensus 362 ~~~~~lL~~l~~~~~ 376 (378)
..+.++|.++...+.
T Consensus 172 ~~l~~~l~~~~~~g~ 186 (490)
T PRK10938 172 QQLAELLASLHQSGI 186 (490)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999865443
No 264
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=1.7e-14 Score=134.75 Aligned_cols=126 Identities=20% Similarity=0.151 Sum_probs=93.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce-----EEEeccCcccc----------cccchhH------HHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-----FIRVSGSELVQ----------KFIGEGS------RMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-----~i~~~~~~l~~----------~~~~~~~------~~v~~~ 296 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. .|+.+.. .++.+.
T Consensus 26 v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~en 105 (282)
T PRK13640 26 ISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDD 105 (282)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHH
Confidence 36788999999999999999999999999998753 67777765421 1111111 122332
Q ss_pred HHH-----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 297 FVM-----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 297 ~~~-----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+.. ..+..+.+.......+..+|.|++|++.++++ ..|++|++|| |++++|
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDE----------Pt~gLD 175 (282)
T PRK13640 106 VAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDE----------STSMLD 175 (282)
T ss_pred HHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC----------CcccCC
Confidence 221 11233334445566778999999999999998 9999999999 999999
Q ss_pred hHHHHHHHHHHHhccC
Q psy6098 358 SEVQRTMLELLNQLDG 373 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~ 373 (378)
+..+..+.++|.++..
T Consensus 176 ~~~~~~l~~~l~~l~~ 191 (282)
T PRK13640 176 PAGKEQILKLIRKLKK 191 (282)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998753
No 265
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.52 E-value=2.6e-14 Score=130.20 Aligned_cols=125 Identities=20% Similarity=0.240 Sum_probs=89.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------c---ccchh----HHHHHHHHHHhh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------K---FIGEG----SRMVRELFVMAS 301 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~---~~~~~----~~~v~~~~~~a~ 301 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+....
T Consensus 22 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~ 101 (238)
T cd03249 22 LSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGK 101 (238)
T ss_pred eEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccC
Confidence 46789999999999999999999999999998765 77777754321 0 11111 113333332110
Q ss_pred ----------------hhhh------hhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 302 ----------------LKKL------AFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 302 ----------------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+..+ .........+..+|.|++|++.++++ .+|++|++|| |++++|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE----------P~~gLD 171 (238)
T cd03249 102 PDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDE----------ATSALD 171 (238)
T ss_pred CCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeC----------ccccCC
Confidence 0000 00111223456899999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhcc
Q psy6098 358 SEVQRTMLELLNQLD 372 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~ 372 (378)
+..+..+.++|.++.
T Consensus 172 ~~~~~~l~~~l~~~~ 186 (238)
T cd03249 172 AESEKLVQEALDRAM 186 (238)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999875
No 266
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.52 E-value=1.7e-14 Score=131.84 Aligned_cols=129 Identities=21% Similarity=0.207 Sum_probs=89.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhc--Cce--EEEeccCcccc--------c---ccchhH-----HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--ECT--FIRVSGSELVQ--------K---FIGEGS-----RMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~--~~~--~i~~~~~~l~~--------~---~~~~~~-----~~v~~~~ 297 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+ .+. .|.+++.++.. . |+.+.. .++.+.+
T Consensus 19 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~ 98 (243)
T TIGR01978 19 VNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFL 98 (243)
T ss_pred cceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHH
Confidence 36788999999999999999999999999985 333 77777654311 0 111110 0122211
Q ss_pred HH------------------------hhhhhhhhc-cCchhhhh-Hhhhhhhhhhccccc--CCCeEEEEecCccccCCC
Q psy6098 298 VM------------------------ASLKKLAFA-HHPLLFWS-LLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSR 349 (378)
Q Consensus 298 ~~------------------------a~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r 349 (378)
.. ..+..+.+. ......+. .+|+|++|++.++++ ..|.+|+|||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE-------- 170 (243)
T TIGR01978 99 RSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDE-------- 170 (243)
T ss_pred HHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecC--------
Confidence 11 011112222 12234454 499999999999998 8999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 350 IESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 350 ~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
|++++|+..+..+.++|.++...+.
T Consensus 171 --Pt~~LD~~~~~~l~~~l~~~~~~~~ 195 (243)
T TIGR01978 171 --IDSGLDIDALKIVAEGINRLREPDR 195 (243)
T ss_pred --CcccCCHHHHHHHHHHHHHHHHCCc
Confidence 9999999999999999998864443
No 267
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.52 E-value=1.5e-14 Score=130.71 Aligned_cols=125 Identities=18% Similarity=0.262 Sum_probs=91.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------c---ccchh----HHHHHHHHHH--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------K---FIGEG----SRMVRELFVM-- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~---~~~~~----~~~v~~~~~~-- 299 (378)
.+|.+.+|+.++|.||||+|||||+++|+|...+. .|.+++.++.. . |+.+. ...+.+.+..
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~ 105 (225)
T PRK10247 26 ISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPW 105 (225)
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHH
Confidence 46789999999999999999999999999998765 67777644311 0 11110 0122222211
Q ss_pred -------------hhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 300 -------------ASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 300 -------------a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
..++.+.+. ......+..+|.|++|++.++++ ..|+|++||| |++++|+..+..
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE----------Pt~~LD~~~~~~ 175 (225)
T PRK10247 106 QIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE----------ITSALDESNKHN 175 (225)
T ss_pred hhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC----------CcccCCHHHHHH
Confidence 112223332 23456678899999999999998 8999999999 999999999999
Q ss_pred HHHHHHhcc
Q psy6098 364 MLELLNQLD 372 (378)
Q Consensus 364 ~~~lL~~l~ 372 (378)
+.++|.++.
T Consensus 176 l~~~l~~~~ 184 (225)
T PRK10247 176 VNEIIHRYV 184 (225)
T ss_pred HHHHHHHHH
Confidence 999999874
No 268
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.52 E-value=2.1e-14 Score=120.48 Aligned_cols=94 Identities=21% Similarity=0.242 Sum_probs=78.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFW 315 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~ 315 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.. .++. .
T Consensus 19 ~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~----~i~~--------------------------~ 68 (144)
T cd03221 19 ISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV----KIGY--------------------------F 68 (144)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeE----EEEE--------------------------E
Confidence 46788999999999999999999999999998765 67776531 0110 0
Q ss_pred hHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhc
Q psy6098 316 SLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 371 (378)
Q Consensus 316 ~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l 371 (378)
..+|.|++|++.++++ .+|+++++|| |++++|+..+..+.++|+++
T Consensus 69 ~~lS~G~~~rv~laral~~~p~illlDE----------P~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 69 EQLSGGEKMRLALAKLLLENPNLLLLDE----------PTNHLDLESIEALEEALKEY 116 (144)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHc
Confidence 1189999999999998 8999999999 99999999999999999876
No 269
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.52 E-value=1.5e-14 Score=132.66 Aligned_cols=129 Identities=18% Similarity=0.129 Sum_probs=91.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce-EEEeccCcccc----------cccchh-----HHHHHHHHHHh-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-FIRVSGSELVQ----------KFIGEG-----SRMVRELFVMA- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-~i~~~~~~l~~----------~~~~~~-----~~~v~~~~~~a- 300 (378)
.+|.+.+|+.++|.||||+|||||+++|+|..... .|.+++.++.. .|+.+. ..++.+.+...
T Consensus 15 vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~ 94 (248)
T PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQ 94 (248)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcC
Confidence 46789999999999999999999999999987533 67777654311 011110 01222222211
Q ss_pred ---------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--C-------CCeEEEEecCccccCCCCCCCCCC
Q psy6098 301 ---------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--H-------APSIIFMDEIDSIGSSRIESGSGG 356 (378)
Q Consensus 301 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~p~vl~lDEid~~~~~r~~~~~~~ 356 (378)
.++.+.+.......+..+|.|++|++.++++ . .|.+|+||| |++++
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDE----------Pt~~L 164 (248)
T PRK03695 95 PDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDE----------PMNSL 164 (248)
T ss_pred ccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcC----------CcccC
Confidence 1222333444455678899999999999998 3 569999999 99999
Q ss_pred ChHHHHHHHHHHHhccCCCC
Q psy6098 357 DSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 357 d~~~~~~~~~lL~~l~~~~~ 376 (378)
|+..+..+.++|.++...+.
T Consensus 165 D~~~~~~l~~~L~~~~~~~~ 184 (248)
T PRK03695 165 DVAQQAALDRLLSELCQQGI 184 (248)
T ss_pred CHHHHHHHHHHHHHHHhCCC
Confidence 99999999999998864443
No 270
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=4.7e-14 Score=119.45 Aligned_cols=122 Identities=19% Similarity=0.184 Sum_probs=97.1
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc---------ccch-----hHHHHHHHHHHh--
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK---------FIGE-----GSRMVRELFVMA-- 300 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~---------~~~~-----~~~~v~~~~~~a-- 300 (378)
+|.+.+|+.+.+.||||+|||||+|+|||++.+. .|.+++..+... |.|. ++-++.|++...
T Consensus 22 ~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~ 101 (209)
T COG4133 22 SFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQR 101 (209)
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHH
Confidence 5778999999999999999999999999999987 888887655221 2221 222344443322
Q ss_pred ------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHH
Q psy6098 301 ------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLE 366 (378)
Q Consensus 301 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~ 366 (378)
.+..+++....+.....+|.|+++|++++|- ..+++.+||| |++++|.+....+..
T Consensus 102 ~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDE----------P~taLDk~g~a~l~~ 171 (209)
T COG4133 102 FHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDE----------PFTALDKEGVALLTA 171 (209)
T ss_pred HhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecC----------cccccCHHHHHHHHH
Confidence 2555667888889999999999999999997 7777999999 999999999998888
Q ss_pred HHHh
Q psy6098 367 LLNQ 370 (378)
Q Consensus 367 lL~~ 370 (378)
++.+
T Consensus 172 l~~~ 175 (209)
T COG4133 172 LMAA 175 (209)
T ss_pred HHHH
Confidence 8764
No 271
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.52 E-value=2.3e-14 Score=129.34 Aligned_cols=130 Identities=20% Similarity=0.188 Sum_probs=91.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEecc--C--ccc-----------cc---ccchhH-----HH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSG--S--ELV-----------QK---FIGEGS-----RM 292 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~--~--~l~-----------~~---~~~~~~-----~~ 292 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++ . ++. .. |+.+.. .+
T Consensus 27 vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 106 (224)
T TIGR02324 27 VSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVS 106 (224)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCcc
Confidence 46788999999999999999999999999998765 677652 1 221 00 111110 01
Q ss_pred HHHHHHH-----------------hhhhhhhhcc-CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCC
Q psy6098 293 VRELFVM-----------------ASLKKLAFAH-HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIES 352 (378)
Q Consensus 293 v~~~~~~-----------------a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~ 352 (378)
+.+.+.. ..+..+.+.. .....+..+|.|++|+++++++ ..|.++++|| |
T Consensus 107 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE----------P 176 (224)
T TIGR02324 107 ALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDE----------P 176 (224)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC----------C
Confidence 2222111 0122222222 2244677899999999999998 8999999999 9
Q ss_pred CCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 353 GSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 353 ~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
++++|+..++.+.++|.++...+.|
T Consensus 177 t~~LD~~~~~~l~~~l~~~~~~g~t 201 (224)
T TIGR02324 177 TASLDAANRQVVVELIAEAKARGAA 201 (224)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCE
Confidence 9999999999999999998655543
No 272
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.52 E-value=1.7e-14 Score=129.79 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=88.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------cccchh----HHHHHHHHHHh-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------KFIGEG----SRMVRELFVMA- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~~~~~~----~~~v~~~~~~a- 300 (378)
-+|.+.+|+.++|.||||+|||||+++|+|...+. .|.+++..+.. .|+.+. ..++.+.+...
T Consensus 23 i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~ 102 (220)
T cd03245 23 VSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGA 102 (220)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCC
Confidence 36788999999999999999999999999998765 67777654311 011110 01333333211
Q ss_pred ----------hhhhhhhccCch-----------hhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 301 ----------SLKKLAFAHHPL-----------LFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 301 ----------~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
.+..+.+..... .....+|+|++|++.++++ .+|++|+||| |++++|
T Consensus 103 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDE----------Pt~~LD 172 (220)
T cd03245 103 PLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDE----------PTSAMD 172 (220)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeC----------ccccCC
Confidence 011111111111 1235899999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccC
Q psy6098 358 SEVQRTMLELLNQLDG 373 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~ 373 (378)
+..+..+.++|.++..
T Consensus 173 ~~~~~~l~~~l~~~~~ 188 (220)
T cd03245 173 MNSEERLKERLRQLLG 188 (220)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999998754
No 273
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.51 E-value=1.7e-14 Score=142.42 Aligned_cols=129 Identities=17% Similarity=0.161 Sum_probs=92.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccc-cc-hhHHHHHHHHHH--------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKF-IG-EGSRMVRELFVM-------------- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~-~~-~~~~~v~~~~~~-------------- 299 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++......+ .+ ....++.+.+..
T Consensus 43 VSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e 122 (549)
T PRK13545 43 ISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKE 122 (549)
T ss_pred eEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHH
Confidence 46788999999999999999999999999998765 6777664311000 00 000112221110
Q ss_pred ---hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCC
Q psy6098 300 ---ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGF 374 (378)
Q Consensus 300 ---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~ 374 (378)
..+..+.+.......+..+|+|++|++.++++ ..|.||+||| |++++|+..+..+.++|.++...
T Consensus 123 ~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDE----------PTsgLD~~sr~~LlelL~el~~~ 192 (549)
T PRK13545 123 IIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDE----------ALSVGDQTFTKKCLDKMNEFKEQ 192 (549)
T ss_pred HHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHHhC
Confidence 11222334444556678999999999999998 8999999999 99999999999999999988544
Q ss_pred CC
Q psy6098 375 EA 376 (378)
Q Consensus 375 ~~ 376 (378)
+.
T Consensus 193 G~ 194 (549)
T PRK13545 193 GK 194 (549)
T ss_pred CC
Confidence 43
No 274
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.51 E-value=1.9e-14 Score=131.06 Aligned_cols=126 Identities=22% Similarity=0.286 Sum_probs=90.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----c---ccchhH-----HHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----K---FIGEGS-----RMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----~---~~~~~~-----~~v~~~~~~--- 299 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+.. ..+.+.+..
T Consensus 19 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~ 98 (237)
T TIGR00968 19 VNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLE 98 (237)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHH
Confidence 35779999999999999999999999999998765 67776644311 0 111100 011221111
Q ss_pred --------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 300 --------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 300 --------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
..+..+.+.......+..+|.|++|++.++++ ..|+++++|| |++++|+..+..
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE----------P~~~LD~~~~~~ 168 (237)
T TIGR00968 99 IRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDE----------PFGALDAKVRKE 168 (237)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------CcccCCHHHHHH
Confidence 11222233334455667899999999999998 8999999999 999999999999
Q ss_pred HHHHHHhccC
Q psy6098 364 MLELLNQLDG 373 (378)
Q Consensus 364 ~~~lL~~l~~ 373 (378)
+.++|.++..
T Consensus 169 ~~~~l~~~~~ 178 (237)
T TIGR00968 169 LRSWLRKLHD 178 (237)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 275
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=3.1e-14 Score=130.77 Aligned_cols=126 Identities=20% Similarity=0.242 Sum_probs=90.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc-------c---ccch-----hHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ-------K---FIGE-----GSRMVRE 295 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~-------~---~~~~-----~~~~v~~ 295 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+ ..|.+++.++.. . |+.+ ...++.+
T Consensus 22 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 101 (250)
T PRK14247 22 VNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFE 101 (250)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHH
Confidence 3678889999999999999999999999999862 377777754421 0 1111 0112232
Q ss_pred HHHHh-------------------hhhhhhhc----cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 296 LFVMA-------------------SLKKLAFA----HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 296 ~~~~a-------------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
.+... .++.+.+. ......+..+|+|++|++.++++ ..|+|++|||
T Consensus 102 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE--------- 172 (250)
T PRK14247 102 NVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADE--------- 172 (250)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---------
Confidence 22211 01111221 12345667899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 173 -P~~~LD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14247 173 -PTANLDPENTAKIESLFLELKK 194 (250)
T ss_pred -CCccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998753
No 276
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.51 E-value=1.7e-14 Score=137.36 Aligned_cols=126 Identities=21% Similarity=0.227 Sum_probs=93.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc-------------ccchh-------HHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK-------------FIGEG-------SRMVRE 295 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~-------------~~~~~-------~~~v~~ 295 (378)
-+|.+.+|+.++|+|+||||||||+++|+|++.+. .|.+++.++... |+.+. ..++.+
T Consensus 40 vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~ 119 (331)
T PRK15079 40 VTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGE 119 (331)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHH
Confidence 46789999999999999999999999999998765 778877655210 11111 112222
Q ss_pred HHHH-------------------hhhhhhhh-ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCC
Q psy6098 296 LFVM-------------------ASLKKLAF-AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESG 353 (378)
Q Consensus 296 ~~~~-------------------a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~ 353 (378)
.+.. ..++.+.+ .......+..||+|++|++.++++ ..|.||++|| |+
T Consensus 120 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDE----------Pt 189 (331)
T PRK15079 120 IIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDE----------PV 189 (331)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC----------CC
Confidence 2211 01222233 123456677899999999999998 8999999999 99
Q ss_pred CCCChHHHHHHHHHHHhccC
Q psy6098 354 SGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 354 ~~~d~~~~~~~~~lL~~l~~ 373 (378)
+++|...+..+.++|.++..
T Consensus 190 s~LD~~~~~~i~~lL~~l~~ 209 (331)
T PRK15079 190 SALDVSIQAQVVNLLQQLQR 209 (331)
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999998854
No 277
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=2.3e-14 Score=144.69 Aligned_cols=129 Identities=19% Similarity=0.212 Sum_probs=95.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc----eEEEeccCcccc--------c---ccchh-----HHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC----TFIRVSGSELVQ--------K---FIGEG-----SRMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~----~~i~~~~~~l~~--------~---~~~~~-----~~~v~~~~ 297 (378)
-+|.+.+|+.++|+||||+|||||+|+|+|.+.+ ..|.+++.++.. . |+.+. ..++.+.+
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 103 (506)
T PRK13549 24 VSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENI 103 (506)
T ss_pred eeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHh
Confidence 4678899999999999999999999999999875 277777654311 0 11110 01222221
Q ss_pred HH--------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCC
Q psy6098 298 VM--------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSG 355 (378)
Q Consensus 298 ~~--------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~ 355 (378)
.. ..+..+.+.......+..||+|++|++.++++ ..|.|||||| |+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDE----------Pt~~ 173 (506)
T PRK13549 104 FLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDE----------PTAS 173 (506)
T ss_pred hhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCCC
Confidence 11 11333445555677888999999999999998 8999999999 9999
Q ss_pred CChHHHHHHHHHHHhccCCCC
Q psy6098 356 GDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 356 ~d~~~~~~~~~lL~~l~~~~~ 376 (378)
+|+..+..+.++|.++...+.
T Consensus 174 LD~~~~~~l~~~l~~l~~~~~ 194 (506)
T PRK13549 174 LTESETAVLLDIIRDLKAHGI 194 (506)
T ss_pred CCHHHHHHHHHHHHHHHHCCC
Confidence 999999999999998864443
No 278
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=2.4e-14 Score=133.44 Aligned_cols=126 Identities=18% Similarity=0.188 Sum_probs=92.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------cccchhH------HHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------KFIGEGS------RMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~~~~~~~------~~v~~~~~~ 299 (378)
.++.+.+|+.++|.||||+|||||+++|+|...+. .|.+++.++.. .|+.+.. ..+.+.+..
T Consensus 26 v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~ 105 (277)
T PRK13642 26 VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAF 105 (277)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHh
Confidence 46788999999999999999999999999999875 77777654321 0111111 122222211
Q ss_pred h-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 300 A-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 300 a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
. .+..+.+.......+..+|.|++|++.++++ ..|.+|++|| |++++|+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDE----------Pt~~LD~~~ 175 (277)
T PRK13642 106 GMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDE----------STSMLDPTG 175 (277)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC----------CcccCCHHH
Confidence 0 1122223334455667899999999999998 8999999999 999999999
Q ss_pred HHHHHHHHHhccC
Q psy6098 361 QRTMLELLNQLDG 373 (378)
Q Consensus 361 ~~~~~~lL~~l~~ 373 (378)
+..+.++|.++..
T Consensus 176 ~~~l~~~l~~l~~ 188 (277)
T PRK13642 176 RQEIMRVIHEIKE 188 (277)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988854
No 279
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.51 E-value=2.6e-14 Score=143.88 Aligned_cols=129 Identities=17% Similarity=0.190 Sum_probs=95.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------c---ccchh-----HHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------K---FIGEG-----SRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~---~~~~~-----~~~v~~~~~~ 299 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+..
T Consensus 17 vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 96 (491)
T PRK10982 17 VNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWL 96 (491)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhc
Confidence 46788999999999999999999999999998765 77777754310 0 11111 0122222111
Q ss_pred --------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 300 --------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 300 --------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
..+..+.+.......+..||+|++|++.++++ ..|.|||||| |++++|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDE----------Pt~~LD 166 (491)
T PRK10982 97 GRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDE----------PTSSLT 166 (491)
T ss_pred ccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeC----------CCCCCC
Confidence 11233344455667788999999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccCCCC
Q psy6098 358 SEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~~~~ 376 (378)
+..+..+.++|.++...+.
T Consensus 167 ~~~~~~l~~~l~~l~~~g~ 185 (491)
T PRK10982 167 EKEVNHLFTIIRKLKERGC 185 (491)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 9999999999998865444
No 280
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.51 E-value=3.4e-14 Score=146.33 Aligned_cols=127 Identities=20% Similarity=0.142 Sum_probs=95.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccc------------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIG------------------ 287 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~------------------ 287 (378)
-++.+++|+.+++.|+||||||||+|.++|.+.+. .|.+++.++..- |+.
T Consensus 492 isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~ 571 (709)
T COG2274 492 LSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGN 571 (709)
T ss_pred eeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCC
Confidence 35678999999999999999999999999999987 999999877211 111
Q ss_pred --hhHHHHHHHHHHhhhhhhhhc------cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 288 --EGSRMVRELFVMASLKKLAFA------HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 288 --~~~~~v~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
.+...+.++...|....+..+ ......=..+|+|++|++.+||+ ++|+||+||| ||+++|
T Consensus 572 p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDE----------aTSaLD 641 (709)
T COG2274 572 PEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDE----------ATSALD 641 (709)
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeC----------cccccC
Confidence 111234444444433333222 11222333699999999999999 9999999999 999999
Q ss_pred hHHHHHHHHHHHhccCC
Q psy6098 358 SEVQRTMLELLNQLDGF 374 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~~ 374 (378)
++++..+.+-|.++.+.
T Consensus 642 ~~sE~~I~~~L~~~~~~ 658 (709)
T COG2274 642 PETEAIILQNLLQILQG 658 (709)
T ss_pred HhHHHHHHHHHHHHhcC
Confidence 99999999998887643
No 281
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.50 E-value=3e-14 Score=131.01 Aligned_cols=125 Identities=20% Similarity=0.198 Sum_probs=90.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCc-----ccc--------------cccchhH------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSE-----LVQ--------------KFIGEGS------ 290 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~-----l~~--------------~~~~~~~------ 290 (378)
-++.+.+|+.++|.||||+|||||+++|+|...+. .|.+++.+ +.. .|+.+..
T Consensus 22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 101 (253)
T TIGR02323 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRM 101 (253)
T ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCc
Confidence 46788999999999999999999999999998765 67776543 210 0111110
Q ss_pred -----HHHHHHH------------H--Hhhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCC
Q psy6098 291 -----RMVRELF------------V--MASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSS 348 (378)
Q Consensus 291 -----~~v~~~~------------~--~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~ 348 (378)
.++...+ . ...+..+.+. ......+..+|+|++|++.++++ .+|.||++||
T Consensus 102 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDE------- 174 (253)
T TIGR02323 102 RVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDE------- 174 (253)
T ss_pred cccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcC-------
Confidence 1111100 0 0012333333 24455777899999999999998 8999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 349 RIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 349 r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
|++++|+..+..+.++|.++.
T Consensus 175 ---P~~~LD~~~~~~l~~~l~~~~ 195 (253)
T TIGR02323 175 ---PTGGLDVSVQARLLDLLRGLV 195 (253)
T ss_pred ---CCccCCHHHHHHHHHHHHHHH
Confidence 999999999999999998864
No 282
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.50 E-value=5.1e-14 Score=124.31 Aligned_cols=126 Identities=20% Similarity=0.180 Sum_probs=91.2
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccc--------ccccch--------------------
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELV--------QKFIGE-------------------- 288 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~--------~~~~~~-------------------- 288 (378)
++.+.+|++-+|+||||+|||||++.+++...+. .+.+.|..+- .+.+|.
T Consensus 51 sW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVl 130 (257)
T COG1119 51 SWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVL 130 (257)
T ss_pred ceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeee
Confidence 5578999999999999999999999999988763 3333332210 000010
Q ss_pred ---------hH-H--HHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCC
Q psy6098 289 ---------GS-R--MVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGS 354 (378)
Q Consensus 289 ---------~~-~--~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~ 354 (378)
.. . .....-....++.+.........|..+|.|+++++.++|+ ..|.+||||| |++
T Consensus 131 Sg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDE----------P~~ 200 (257)
T COG1119 131 SGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDE----------PAQ 200 (257)
T ss_pred ecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecC----------ccc
Confidence 00 0 0001111112455566778888999999999999999999 9999999999 999
Q ss_pred CCChHHHHHHHHHHHhccCC
Q psy6098 355 GGDSEVQRTMLELLNQLDGF 374 (378)
Q Consensus 355 ~~d~~~~~~~~~lL~~l~~~ 374 (378)
|+|...++.+.+.|.++..-
T Consensus 201 GLDl~~re~ll~~l~~~~~~ 220 (257)
T COG1119 201 GLDLIAREQLLNRLEELAAS 220 (257)
T ss_pred cCChHHHHHHHHHHHHHhcC
Confidence 99999998888888876543
No 283
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.50 E-value=3.6e-14 Score=130.10 Aligned_cols=126 Identities=21% Similarity=0.262 Sum_probs=90.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc---------c---ccchhH----HHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ---------K---FIGEGS----RMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~---------~---~~~~~~----~~v~ 294 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+ ..|.+++.++.. . |+.+.. .++.
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 99 (247)
T TIGR00972 20 INLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIY 99 (247)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHH
Confidence 4678999999999999999999999999999864 367777654421 0 111100 1222
Q ss_pred HHHHHh------------------hhhhhhhc----cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMA------------------SLKKLAFA----HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a------------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+... .++.+.+. ......+..+|+|++|+++++++ ..|++|++||
T Consensus 100 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE--------- 170 (247)
T TIGR00972 100 DNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDE--------- 170 (247)
T ss_pred HHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---------
Confidence 222110 11222222 33445667899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 171 -Pt~~LD~~~~~~l~~~l~~~~~ 192 (247)
T TIGR00972 171 -PTSALDPIATGKIEELIQELKK 192 (247)
T ss_pred -CcccCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999998754
No 284
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=6.8e-15 Score=131.51 Aligned_cols=129 Identities=26% Similarity=0.289 Sum_probs=98.2
Q ss_pred hhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc--------------ccchhHH-----HH
Q psy6098 235 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK--------------FIGEGSR-----MV 293 (378)
Q Consensus 235 ~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~--------------~~~~~~~-----~v 293 (378)
.+-.++..+.....+|.|++|+||||++++|||+..++ .|.+++.-+.+. |+-+..+ +|
T Consensus 14 ~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 14 ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 33455666666789999999999999999999999998 888888766432 1111111 11
Q ss_pred HHHHHHh-----------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 294 RELFVMA-----------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 294 ~~~~~~a-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
+.++.+. ....+++.+.....+..||+|++|++++.|+ .+|.+|++|| |.+++|...
T Consensus 94 rgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDE----------PLaSLD~~R 163 (352)
T COG4148 94 RGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDE----------PLASLDLPR 163 (352)
T ss_pred ecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecC----------chhhcccch
Confidence 1111111 1334456777788889999999999999999 9999999999 999999999
Q ss_pred HHHHHHHHHhccC
Q psy6098 361 QRTMLELLNQLDG 373 (378)
Q Consensus 361 ~~~~~~lL~~l~~ 373 (378)
++.++.+|+.+..
T Consensus 164 K~EilpylERL~~ 176 (352)
T COG4148 164 KREILPYLERLRD 176 (352)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999998764
No 285
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.50 E-value=3.1e-14 Score=131.35 Aligned_cols=126 Identities=20% Similarity=0.212 Sum_probs=91.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCc-----ccc--------------cccchhH------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSE-----LVQ--------------KFIGEGS------ 290 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~-----l~~--------------~~~~~~~------ 290 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.+ +.. .|+.+..
T Consensus 25 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 104 (258)
T PRK11701 25 VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRM 104 (258)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCc
Confidence 46789999999999999999999999999998765 77777654 211 0111111
Q ss_pred -----HHHHHHHH--------------Hhhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCC
Q psy6098 291 -----RMVRELFV--------------MASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSS 348 (378)
Q Consensus 291 -----~~v~~~~~--------------~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~ 348 (378)
.++...+. ...++.+.+. ......+..+|+|++|+++++++ .+|.||+|||
T Consensus 105 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDE------- 177 (258)
T PRK11701 105 QVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDE------- 177 (258)
T ss_pred cccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcC-------
Confidence 01111000 0012223333 23456678899999999999998 8999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 349 RIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 349 r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+.....+.++|+++..
T Consensus 178 ---Pt~~LD~~~~~~l~~~l~~~~~ 199 (258)
T PRK11701 178 ---PTGGLDVSVQARLLDLLRGLVR 199 (258)
T ss_pred ---CcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988743
No 286
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.50 E-value=3.2e-14 Score=128.06 Aligned_cols=126 Identities=26% Similarity=0.331 Sum_probs=92.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------c---ccchhH-----HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------K---FIGEGS-----RMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~---~~~~~~-----~~v~~~~ 297 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++..+.. . |+.+.. .++.+.+
T Consensus 24 vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~ 103 (220)
T TIGR02982 24 INLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNV 103 (220)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHH
Confidence 46788899999999999999999999999998765 77777654421 0 011000 0111111
Q ss_pred H------------------HhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 298 V------------------MASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 298 ~------------------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
. ...++.+.+.......+..+|.|++|++.++++ ..|+++++|| |++++|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDE----------P~~~LD 173 (220)
T TIGR02982 104 QMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADE----------PTAALD 173 (220)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCCcCC
Confidence 1 111333344455566778999999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccC
Q psy6098 358 SEVQRTMLELLNQLDG 373 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~ 373 (378)
+..+..+.++|.++..
T Consensus 174 ~~~~~~l~~~l~~~~~ 189 (220)
T TIGR02982 174 SKSGRDVVELMQKLAR 189 (220)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988753
No 287
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.50 E-value=3.2e-14 Score=139.87 Aligned_cols=126 Identities=23% Similarity=0.262 Sum_probs=93.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccc-----------------cc-ccc-hhHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELV-----------------QK-FIG-EGSRMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~-----------------~~-~~~-~~~~~v~~~ 296 (378)
-+|.+.+|+.++|+|++||||||++|+|+|+..+. .|.+++.++. +. |.. .+..+|.++
T Consensus 310 VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~ 389 (539)
T COG1123 310 VSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDI 389 (539)
T ss_pred eeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHH
Confidence 46789999999999999999999999999999886 7888776620 00 000 011112221
Q ss_pred HHHh------------------hhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCC
Q psy6098 297 FVMA------------------SLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSG 355 (378)
Q Consensus 297 ~~~a------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~ 355 (378)
+... .+..+.+. ......+..+|+|++||+++||+ ..|.+|++|| |++.
T Consensus 390 i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DE----------p~Sa 459 (539)
T COG1123 390 LAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDE----------PVSA 459 (539)
T ss_pred HHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecC----------Cccc
Confidence 1111 02222232 35667788999999999999998 8999999999 9999
Q ss_pred CChHHHHHHHHHHHhccC
Q psy6098 356 GDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 356 ~d~~~~~~~~~lL~~l~~ 373 (378)
+|+..+..+.++|.++..
T Consensus 460 LDvsvqa~VlnLl~~lq~ 477 (539)
T COG1123 460 LDVSVQAQVLNLLKDLQE 477 (539)
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999999998864
No 288
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.50 E-value=8.3e-14 Score=114.95 Aligned_cols=129 Identities=22% Similarity=0.305 Sum_probs=92.8
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcc-cccc------------cch--------hHHHHHH
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL-VQKF------------IGE--------GSRMVRE 295 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l-~~~~------------~~~--------~~~~v~~ 295 (378)
.+....|+.+.|.||+|+|||+|+|.+.-+--+. ...+.+..+ ++.. +|. +.-++.+
T Consensus 22 ~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~e 101 (242)
T COG4161 22 TLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQE 101 (242)
T ss_pred eecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHH
Confidence 3456778899999999999999999885432222 444433322 1110 110 0111111
Q ss_pred HHHHh------------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCC
Q psy6098 296 LFVMA------------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSG 355 (378)
Q Consensus 296 ~~~~a------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~ 355 (378)
.+-.| .++++.++...+..+--+|+|.+||++++|+ .+|.|++||| |+.+
T Consensus 102 nlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfde----------ptaa 171 (242)
T COG4161 102 NLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDE----------PTAA 171 (242)
T ss_pred HHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecC----------cccc
Confidence 11111 2666677888888888999999999999999 8999999999 9999
Q ss_pred CChHHHHHHHHHHHhccCCCCC
Q psy6098 356 GDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 356 ~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
+||+....+..+++++.+.|-|
T Consensus 172 ldpeitaqvv~iikel~~tgit 193 (242)
T COG4161 172 LDPEITAQIVSIIKELAETGIT 193 (242)
T ss_pred cCHHHHHHHHHHHHHHHhcCce
Confidence 9999999999999999988765
No 289
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=2.5e-14 Score=135.99 Aligned_cols=126 Identities=21% Similarity=0.285 Sum_probs=92.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc-------------ccchhH-------HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK-------------FIGEGS-------RMVRE 295 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~-------------~~~~~~-------~~v~~ 295 (378)
-+|.+.+|+.++|.|+||||||||+++|+|++.+. .|.+++.++... |+.+.. .++.+
T Consensus 34 vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~ 113 (327)
T PRK11308 34 VSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQ 113 (327)
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHH
Confidence 46788999999999999999999999999998765 777777654210 111111 01221
Q ss_pred HHH------------------Hhhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCC
Q psy6098 296 LFV------------------MASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGS 354 (378)
Q Consensus 296 ~~~------------------~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~ 354 (378)
.+. ...++.+.+. ......+..||+|++||++++++ ..|.|||+|| |++
T Consensus 114 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDE----------Pts 183 (327)
T PRK11308 114 ILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADE----------PVS 183 (327)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEEC----------CCc
Confidence 111 0112333332 23355677899999999999999 8999999999 999
Q ss_pred CCChHHHHHHHHHHHhccC
Q psy6098 355 GGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 355 ~~d~~~~~~~~~lL~~l~~ 373 (378)
++|...+..++++|.++..
T Consensus 184 ~LD~~~~~~i~~lL~~l~~ 202 (327)
T PRK11308 184 ALDVSVQAQVLNLMMDLQQ 202 (327)
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 9999999999999998854
No 290
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=5.8e-14 Score=130.27 Aligned_cols=126 Identities=21% Similarity=0.258 Sum_probs=90.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
-+|.+.+|+.++|.||||+|||||+++|+|...+ ..|.+++.++.. . |+.+. ..++.
T Consensus 32 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 111 (269)
T PRK14259 32 VFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIY 111 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHH
Confidence 3678999999999999999999999999998752 267777654310 0 11111 11344
Q ss_pred HHHHHhh----------------hhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCC
Q psy6098 295 ELFVMAS----------------LKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIES 352 (378)
Q Consensus 295 ~~~~~a~----------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~ 352 (378)
+.+.... ++.+.+ .......+..+|.|++|+++++++ ..|+||+||| |
T Consensus 112 enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE----------P 181 (269)
T PRK14259 112 ENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDE----------P 181 (269)
T ss_pred HHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC----------C
Confidence 4333210 111111 122344567899999999999998 8999999999 9
Q ss_pred CCCCChHHHHHHHHHHHhccC
Q psy6098 353 GSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 353 ~~~~d~~~~~~~~~lL~~l~~ 373 (378)
++++|+..+..+.++|.++..
T Consensus 182 t~gLD~~~~~~l~~~l~~~~~ 202 (269)
T PRK14259 182 CSALDPISTLKIEETMHELKK 202 (269)
T ss_pred CccCCHHHHHHHHHHHHHHhc
Confidence 999999999999999998853
No 291
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.49 E-value=2.8e-14 Score=144.25 Aligned_cols=129 Identities=18% Similarity=0.199 Sum_probs=94.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----------cccchh--------HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----------KFIGEG--------SRMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----------~~~~~~--------~~~v~~~ 296 (378)
-+|.+.+|+.++|.||||||||||+|+|+|.+.++ .|.+++.++.. .|+.+. ..++.+.
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~ 361 (510)
T PRK09700 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQN 361 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHH
Confidence 36789999999999999999999999999998765 67776643210 111111 0112222
Q ss_pred HHH--------------------------hhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccC
Q psy6098 297 FVM--------------------------ASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGS 347 (378)
Q Consensus 297 ~~~--------------------------a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~ 347 (378)
+.. ..+..+.+. ......+..||+|++|++.++++ ..|.||||||
T Consensus 362 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE------ 435 (510)
T PRK09700 362 MAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE------ 435 (510)
T ss_pred hccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC------
Confidence 110 113334444 45677788999999999999998 8999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 348 SRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 348 ~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
|++++|+..+..+.++|.++...+.
T Consensus 436 ----Pt~~LD~~~~~~l~~~l~~l~~~g~ 460 (510)
T PRK09700 436 ----PTRGIDVGAKAEIYKVMRQLADDGK 460 (510)
T ss_pred ----CCCCcCHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999998754443
No 292
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.49 E-value=6.4e-14 Score=124.92 Aligned_cols=125 Identities=16% Similarity=0.162 Sum_probs=89.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------c---ccchh----HHHHHHHHHHhh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------K---FIGEG----SRMVRELFVMAS 301 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~---~~~~~----~~~v~~~~~~a~ 301 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++..+.. . |+.+. ...+.+.+....
T Consensus 27 isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~ 106 (207)
T cd03369 27 VSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFD 106 (207)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccC
Confidence 36788999999999999999999999999998765 77777654311 0 11110 113333332110
Q ss_pred ---hhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 302 ---LKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 302 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
...+.........+..+|.|++|+++++++ ..|++++||| |++++|+..+..+.++|.++.
T Consensus 107 ~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDE----------P~~~LD~~~~~~l~~~l~~~~ 172 (207)
T cd03369 107 EYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDE----------ATASIDYATDALIQKTIREEF 172 (207)
T ss_pred CCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC----------CcccCCHHHHHHHHHHHHHhc
Confidence 000000011234567899999999999998 8999999999 999999999999999999874
No 293
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.49 E-value=8.6e-14 Score=123.82 Aligned_cols=129 Identities=20% Similarity=0.124 Sum_probs=85.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccC-cc-cccc--cch------------hHHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGS-EL-VQKF--IGE------------GSRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~-~l-~~~~--~~~------------~~~~v~~~~~~ 299 (378)
-++.+.+|+.++|.||||+|||||+++|+|...+. .|.+++. .+ .+.. ... ......+....
T Consensus 24 ~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~ 103 (204)
T cd03250 24 INLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKA 103 (204)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHH
Confidence 46789999999999999999999999999998765 6666651 11 1110 000 01111111111
Q ss_pred hhh-hhhh-----hccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHH-HHHh
Q psy6098 300 ASL-KKLA-----FAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLE-LLNQ 370 (378)
Q Consensus 300 a~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~-lL~~ 370 (378)
..+ ..+. ........+..+|.|++|+++++++ ..|+++++|| |++++|+...+.+.+ ++..
T Consensus 104 ~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDE----------P~~~LD~~~~~~l~~~ll~~ 173 (204)
T cd03250 104 CALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDD----------PLSAVDAHVGRHIFENCILG 173 (204)
T ss_pred cCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC----------ccccCCHHHHHHHHHHHHHH
Confidence 111 1111 1112234467899999999999998 8999999999 999999999888887 5665
Q ss_pred ccCCCC
Q psy6098 371 LDGFEA 376 (378)
Q Consensus 371 l~~~~~ 376 (378)
+...+.
T Consensus 174 ~~~~~~ 179 (204)
T cd03250 174 LLLNNK 179 (204)
T ss_pred hccCCC
Confidence 533343
No 294
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.49 E-value=4e-14 Score=142.79 Aligned_cols=130 Identities=15% Similarity=0.130 Sum_probs=95.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------c---ccchhH--------HHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------K---FIGEGS--------RMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~---~~~~~~--------~~v~~~ 296 (378)
-++.+.+|+.++|.||||||||||+|+|+|.+.+. .|.+++.++.. . |+.+.. .++.+.
T Consensus 272 isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~ 351 (501)
T PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADN 351 (501)
T ss_pred eeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHH
Confidence 46788999999999999999999999999998765 67776643310 0 111110 112221
Q ss_pred HH-----------------------Hhhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 297 FV-----------------------MASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 297 ~~-----------------------~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+. ...+..+.+. ......+..||+|++|++.++++ ..|.||||||
T Consensus 352 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDE--------- 422 (501)
T PRK11288 352 INISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDE--------- 422 (501)
T ss_pred hccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcC---------
Confidence 11 1112333442 45677888999999999999998 7999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
|++++|+..++.+.++|.++...+.|
T Consensus 423 -Pt~~LD~~~~~~l~~~l~~l~~~g~t 448 (501)
T PRK11288 423 -PTRGIDVGAKHEIYNVIYELAAQGVA 448 (501)
T ss_pred -CCCCCCHhHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999988765543
No 295
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.49 E-value=3.7e-14 Score=143.07 Aligned_cols=129 Identities=18% Similarity=0.185 Sum_probs=95.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------c---ccchhH-----HHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------K---FIGEGS-----RMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~---~~~~~~-----~~v~~~~~~ 299 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+.. .++.+.+..
T Consensus 23 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 102 (501)
T PRK11288 23 ISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYL 102 (501)
T ss_pred eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHh
Confidence 46788999999999999999999999999998765 77777644310 0 111110 122222211
Q ss_pred --------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 300 --------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 300 --------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
..++.+.+.......+..||+|++|+++++++ ..|.|||||| |++++|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE----------Pt~~LD 172 (501)
T PRK11288 103 GQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDE----------PTSSLS 172 (501)
T ss_pred cccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC----------CCCCCC
Confidence 01233344445567788999999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccCCCC
Q psy6098 358 SEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~~~~ 376 (378)
+..+..+.++|.++...+.
T Consensus 173 ~~~~~~l~~~l~~~~~~g~ 191 (501)
T PRK11288 173 AREIEQLFRVIRELRAEGR 191 (501)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 9999999999998865544
No 296
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.49 E-value=3.4e-14 Score=131.85 Aligned_cols=126 Identities=20% Similarity=0.171 Sum_probs=90.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc----------eEEEeccCcccc----------cccch-----hHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC----------TFIRVSGSELVQ----------KFIGE-----GSRM 292 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~----------~~i~~~~~~l~~----------~~~~~-----~~~~ 292 (378)
-++.+.+|+.++|+||||+|||||+++|+|.+.+ ..|.+++.++.. .|+.+ ...+
T Consensus 20 vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~t 99 (272)
T PRK13547 20 LSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFS 99 (272)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCc
Confidence 3577899999999999999999999999999864 367777654321 01111 0112
Q ss_pred HHHHHHHh---------------------hhhhhhhccCchhhhhHhhhhhhhhhccccc-C----------CCeEEEEe
Q psy6098 293 VRELFVMA---------------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE-H----------APSIIFMD 340 (378)
Q Consensus 293 v~~~~~~a---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~p~vl~lD 340 (378)
+.+.+... .+..+.+.......+..+|+|++|++.++++ . .|.+|+||
T Consensus 100 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLD 179 (272)
T PRK13547 100 AREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLD 179 (272)
T ss_pred HHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEc
Confidence 33332211 1222233334455677899999999999988 2 79999999
Q ss_pred cCccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 341 EIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 341 Eid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
| |++++|+..+..+.++|.++..
T Consensus 180 E----------Pt~~LD~~~~~~l~~~l~~~~~ 202 (272)
T PRK13547 180 E----------PTAALDLAHQHRLLDTVRRLAR 202 (272)
T ss_pred C----------ccccCCHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999998754
No 297
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.49 E-value=4.9e-14 Score=130.03 Aligned_cols=125 Identities=22% Similarity=0.273 Sum_probs=89.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc---------c---ccch-----hHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ---------K---FIGE-----GSRMV 293 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~---------~---~~~~-----~~~~v 293 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+ ..|.+++.++.. . |+.+ ...++
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 102 (258)
T PRK14241 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSI 102 (258)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcH
Confidence 3678899999999999999999999999999852 378887754411 0 1111 00122
Q ss_pred HHHHHHh------------------hhhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCC
Q psy6098 294 RELFVMA------------------SLKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSR 349 (378)
Q Consensus 294 ~~~~~~a------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r 349 (378)
.+.+... .+..+.+ .......+..+|+|++|+++++++ ..|+++++||
T Consensus 103 ~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE-------- 174 (258)
T PRK14241 103 RDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDE-------- 174 (258)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC--------
Confidence 2222111 0111111 123345567899999999999999 8999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhcc
Q psy6098 350 IESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 350 ~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
|++++|+..+..+.++|.++.
T Consensus 175 --Pt~~LD~~~~~~l~~~l~~~~ 195 (258)
T PRK14241 175 --PCSALDPISTLAIEDLINELK 195 (258)
T ss_pred --CCccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999874
No 298
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.49 E-value=5.3e-14 Score=129.33 Aligned_cols=129 Identities=18% Similarity=0.163 Sum_probs=87.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhh--cCce--EEEeccCccccc-----------ccchhH-----HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHH--TECT--FIRVSGSELVQK-----------FIGEGS-----RMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~--~~~~--~i~~~~~~l~~~-----------~~~~~~-----~~v~~~~ 297 (378)
-++.+.+|+.++|+||||+|||||+++|+|. +.+. .|.+++.++... ++.+.. ..+.+.+
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l 105 (252)
T CHL00131 26 LNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFL 105 (252)
T ss_pred ceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHH
Confidence 3678899999999999999999999999997 3332 677766543210 111100 0111111
Q ss_pred HH------------------------hhhhhhhhc-cCchhhhh-Hhhhhhhhhhccccc--CCCeEEEEecCccccCCC
Q psy6098 298 VM------------------------ASLKKLAFA-HHPLLFWS-LLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSR 349 (378)
Q Consensus 298 ~~------------------------a~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r 349 (378)
.. ..+..+.+. ......+. .+|+|++|++.++++ ..|.||++||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE-------- 177 (252)
T CHL00131 106 RLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDE-------- 177 (252)
T ss_pred HHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcC--------
Confidence 10 011222222 12233444 599999999999998 8999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 350 IESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 350 ~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
|++++|+..+..+.++|.++...+.
T Consensus 178 --Pt~~LD~~~~~~l~~~l~~~~~~g~ 202 (252)
T CHL00131 178 --TDSGLDIDALKIIAEGINKLMTSEN 202 (252)
T ss_pred --CcccCCHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999998864444
No 299
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.48 E-value=6.4e-14 Score=128.88 Aligned_cols=126 Identities=21% Similarity=0.260 Sum_probs=88.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC-------ceEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-------CTFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~-------~~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
-++.+.+|+.++|.||||+|||||+++|+|... ...|.+++.++.. . |+.+. ..++.
T Consensus 25 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 104 (253)
T PRK14242 25 ISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIF 104 (253)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCcHH
Confidence 467889999999999999999999999999864 2377777754421 0 11110 01333
Q ss_pred HHHHHhh------------------hhhhhhc----cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMAS------------------LKKLAFA----HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a~------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+.... ++.+.+. ......+..+|+|++|+++++++ ..|.||+|||
T Consensus 105 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDE--------- 175 (253)
T PRK14242 105 ENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDE--------- 175 (253)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---------
Confidence 3332110 1111111 11234466899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 176 -Pt~~LD~~~~~~l~~~l~~~~~ 197 (253)
T PRK14242 176 -PASALDPIATQKIEELIHELKA 197 (253)
T ss_pred -CcccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998853
No 300
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=5.7e-14 Score=133.59 Aligned_cols=126 Identities=18% Similarity=0.215 Sum_probs=91.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc------eEEEeccCccccc--------------ccchh--------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC------TFIRVSGSELVQK--------------FIGEG-------- 289 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~------~~i~~~~~~l~~~--------------~~~~~-------- 289 (378)
-+|.+.+|+.++|.||||||||||+++|+|++.+ ..|.+++.++... |+.+.
T Consensus 26 vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~ 105 (326)
T PRK11022 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPC 105 (326)
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCc
Confidence 4678999999999999999999999999999863 2677877654210 11111
Q ss_pred ---HHHHHHHHHH--------------hhhhhhhhcc---CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccC
Q psy6098 290 ---SRMVRELFVM--------------ASLKKLAFAH---HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGS 347 (378)
Q Consensus 290 ---~~~v~~~~~~--------------a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~ 347 (378)
...+.+.+.. ..++.+.+.. .....+..+|+|++|++.++++ ..|.||++||
T Consensus 106 ~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDE------ 179 (326)
T PRK11022 106 YTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE------ 179 (326)
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC------
Confidence 1112221110 1123333322 2345677999999999999998 8999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 348 SRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 348 ~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..++++|.++..
T Consensus 180 ----Pts~LD~~~~~~il~lL~~l~~ 201 (326)
T PRK11022 180 ----PTTALDVTIQAQIIELLLELQQ 201 (326)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998854
No 301
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=8.2e-14 Score=128.54 Aligned_cols=126 Identities=19% Similarity=0.260 Sum_probs=89.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
-+|.+.+|+.++|.||||+|||||+++|+|...+ ..|.+++.++.. . |+.+. ..++.
T Consensus 31 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 110 (258)
T PRK14268 31 VSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIY 110 (258)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccHH
Confidence 4678999999999999999999999999998763 367776644311 0 11110 01233
Q ss_pred HHHHHh-----------------hhhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCC
Q psy6098 295 ELFVMA-----------------SLKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIE 351 (378)
Q Consensus 295 ~~~~~a-----------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~ 351 (378)
+.+... .+..+.+ .......+..+|+|++|++.++++ ..|+|++|||
T Consensus 111 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE---------- 180 (258)
T PRK14268 111 DNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE---------- 180 (258)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC----------
Confidence 322211 0111111 112345667899999999999998 8999999999
Q ss_pred CCCCCChHHHHHHHHHHHhccC
Q psy6098 352 SGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 352 ~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 181 Pt~~LD~~~~~~l~~~l~~l~~ 202 (258)
T PRK14268 181 PTSALDPISTARIEDLIMNLKK 202 (258)
T ss_pred CCcccCHHHHHHHHHHHHHHhh
Confidence 9999999999999999998753
No 302
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.48 E-value=6.5e-14 Score=129.85 Aligned_cols=126 Identities=21% Similarity=0.279 Sum_probs=89.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+ ..|.+++.++.. . |+.+. ..++.
T Consensus 38 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 117 (267)
T PRK14235 38 VDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIY 117 (267)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHH
Confidence 4678899999999999999999999999999863 277777754321 0 11110 01233
Q ss_pred HHHHHh-------------------hhhhhhhc----cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCC
Q psy6098 295 ELFVMA-------------------SLKKLAFA----HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSR 349 (378)
Q Consensus 295 ~~~~~a-------------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r 349 (378)
+.+... .+..+.+. ......+..+|+|++|++.++++ ..|.||+|||
T Consensus 118 enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE-------- 189 (267)
T PRK14235 118 ENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDE-------- 189 (267)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC--------
Confidence 322211 01111121 11234567899999999999998 8999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhccC
Q psy6098 350 IESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 350 ~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 190 --Pt~~LD~~~~~~l~~~L~~l~~ 211 (267)
T PRK14235 190 --PCSALDPIATAKVEELIDELRQ 211 (267)
T ss_pred --CCcCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998854
No 303
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.48 E-value=7.4e-14 Score=128.54 Aligned_cols=125 Identities=18% Similarity=0.152 Sum_probs=89.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc----e--EEEeccCccc-----cc---ccchh-------HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC----T--FIRVSGSELV-----QK---FIGEG-------SRMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~----~--~i~~~~~~l~-----~~---~~~~~-------~~~v~~~ 296 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+ + .|.+++.++. .. |+.+. ...+.+.
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~ 101 (254)
T PRK10418 22 VSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTH 101 (254)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHH
Confidence 4678999999999999999999999999999876 3 6777665431 00 11111 0011111
Q ss_pred HH---------------Hhhhhhhhhcc---CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCC
Q psy6098 297 FV---------------MASLKKLAFAH---HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGG 356 (378)
Q Consensus 297 ~~---------------~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~ 356 (378)
.. ...++.+.+.. .....+..+|.|++|++.++++ ..|+|||||| |++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDE----------Pt~~L 171 (254)
T PRK10418 102 ARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADE----------PTTDL 171 (254)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeC----------CCccc
Confidence 10 00122223322 2345677899999999999998 8999999999 99999
Q ss_pred ChHHHHHHHHHHHhcc
Q psy6098 357 DSEVQRTMLELLNQLD 372 (378)
Q Consensus 357 d~~~~~~~~~lL~~l~ 372 (378)
|+..++.+.++|.++.
T Consensus 172 D~~~~~~l~~~L~~~~ 187 (254)
T PRK10418 172 DVVAQARILDLLESIV 187 (254)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998874
No 304
>KOG0744|consensus
Probab=99.48 E-value=4e-14 Score=128.75 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=69.5
Q ss_pred CCCCCCCChhHHHHHHHhhccC---------ceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEE--Eeehh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTE---------CTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFF--TMDVD 73 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~---------~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf--~DEid 73 (378)
|+.||||||||.|++|+|+.+. ..++++|...|.|||.+||.+.|..+|+........+|..+| |||++
T Consensus 181 LlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 181 LLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVE 260 (423)
T ss_pred EEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHH
Confidence 5789999999999999999984 489999999999999999999999999999877766665444 99999
Q ss_pred hhhhccCCCCch
Q psy6098 74 EAIKSSEGFKPY 85 (378)
Q Consensus 74 ~~~~~~~g~~~~ 85 (378)
++...|....++
T Consensus 261 SLa~aR~s~~S~ 272 (423)
T KOG0744|consen 261 SLAAARTSASSR 272 (423)
T ss_pred HHHHHHHhhhcC
Confidence 999876554433
No 305
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=7.3e-14 Score=128.57 Aligned_cols=125 Identities=21% Similarity=0.227 Sum_probs=89.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+ ..|.+++.++.. . |+.+. ..++.
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 105 (254)
T PRK14273 26 INIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIY 105 (254)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHH
Confidence 4678899999999999999999999999999874 377777654311 0 11110 01233
Q ss_pred HHHHHhh------------------hhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMAS------------------LKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a~------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+.... +..+.+ .......+..+|+|++|+++++++ ..|+||+|||
T Consensus 106 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE--------- 176 (254)
T PRK14273 106 DNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDE--------- 176 (254)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---------
Confidence 3222110 111111 112344567899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcc
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
|++++|+..+..+.++|.++.
T Consensus 177 -Pt~~LD~~~~~~l~~~l~~~~ 197 (254)
T PRK14273 177 -PTSALDPISTGKIEELIINLK 197 (254)
T ss_pred -CCcccCHHHHHHHHHHHHHHh
Confidence 999999999999999999885
No 306
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=2.6e-14 Score=121.73 Aligned_cols=108 Identities=28% Similarity=0.371 Sum_probs=83.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFW 315 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~ 315 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+. .+.+++.++... ....... .+. ..
T Consensus 18 ~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~----~~~~~~~--------~i~-------~~ 78 (157)
T cd00267 18 VSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKL----PLEELRR--------RIG-------YV 78 (157)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccC----CHHHHHh--------ceE-------EE
Confidence 46788999999999999999999999999998865 777777654321 0000000 000 01
Q ss_pred hHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCC
Q psy6098 316 SLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGF 374 (378)
Q Consensus 316 ~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~ 374 (378)
..+|.|+++++.++++ ..|+++++|| |++++|...+..+.++|.++...
T Consensus 79 ~qlS~G~~~r~~l~~~l~~~~~i~ilDE----------p~~~lD~~~~~~l~~~l~~~~~~ 129 (157)
T cd00267 79 PQLSGGQRQRVALARALLLNPDLLLLDE----------PTSGLDPASRERLLELLRELAEE 129 (157)
T ss_pred eeCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCcCCCHHHHHHHHHHHHHHHHC
Confidence 1189999999999888 8899999999 99999999999999999887543
No 307
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=8.3e-14 Score=128.10 Aligned_cols=126 Identities=25% Similarity=0.247 Sum_probs=90.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCccc--c-------c---ccchh-----HHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELV--Q-------K---FIGEG-----SRMV 293 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~--~-------~---~~~~~-----~~~v 293 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+ ..|.+++.++. . . |+.+. ..++
T Consensus 23 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 102 (253)
T PRK14267 23 VDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTI 102 (253)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcH
Confidence 3678899999999999999999999999999864 37777765442 0 0 11110 1123
Q ss_pred HHHHHHh-------------------hhhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCC
Q psy6098 294 RELFVMA-------------------SLKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSS 348 (378)
Q Consensus 294 ~~~~~~a-------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~ 348 (378)
.+.+... .++.+.+ .......+..+|+|++|+++++++ ..|.||++||
T Consensus 103 ~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE------- 175 (253)
T PRK14267 103 YDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE------- 175 (253)
T ss_pred HHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcC-------
Confidence 3322211 0111111 122345677899999999999998 8999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 349 RIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 349 r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 176 ---P~~~LD~~~~~~l~~~l~~~~~ 197 (253)
T PRK14267 176 ---PTANIDPVGTAKIEELLFELKK 197 (253)
T ss_pred ---CCccCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999998753
No 308
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.47 E-value=6.1e-14 Score=141.47 Aligned_cols=130 Identities=19% Similarity=0.265 Sum_probs=95.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----------cccchhH--------HHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----------KFIGEGS--------RMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----------~~~~~~~--------~~v~~~ 296 (378)
-+|.+.+|+.++|+||||+|||||+++|+|.+.++ .|.+++.++.. .|+.+.. .++.+.
T Consensus 271 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~ 350 (501)
T PRK10762 271 VSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKEN 350 (501)
T ss_pred ceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHH
Confidence 46788999999999999999999999999998765 77777643310 0111110 122221
Q ss_pred HHH-----------------------hhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 297 FVM-----------------------ASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 297 ~~~-----------------------a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.. ..+..+.+. ......+..||+|++|++.++++ ..|.||+|||
T Consensus 351 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDE--------- 421 (501)
T PRK10762 351 MSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDE--------- 421 (501)
T ss_pred hhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcC---------
Confidence 111 012233342 45677788999999999999998 7999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
|++++|+..+..+.++|.++...+.|
T Consensus 422 -Pt~~LD~~~~~~l~~~l~~~~~~g~t 447 (501)
T PRK10762 422 -PTRGVDVGAKKEIYQLINQFKAEGLS 447 (501)
T ss_pred -CCCCCCHhHHHHHHHHHHHHHHCCCE
Confidence 99999999999999999998655543
No 309
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.47 E-value=6.5e-14 Score=141.47 Aligned_cols=129 Identities=17% Similarity=0.169 Sum_probs=94.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----------cccchhH--------HHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----------KFIGEGS--------RMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----------~~~~~~~--------~~v~~~ 296 (378)
-++.+.+|+.++|.||||+|||||+|+|+|.+.+. .|.+++.++.. .|+.+.. ..+.+.
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~ 361 (510)
T PRK15439 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWN 361 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHH
Confidence 46788999999999999999999999999998765 67776643311 0111110 011111
Q ss_pred HH--------------------Hhhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCC
Q psy6098 297 FV--------------------MASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESG 353 (378)
Q Consensus 297 ~~--------------------~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~ 353 (378)
+. ...+..+.+. ......+..||+|++|++.++++ ..|.|||||| |+
T Consensus 362 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDE----------Pt 431 (510)
T PRK15439 362 VCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDE----------PT 431 (510)
T ss_pred HHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECC----------CC
Confidence 10 0112333444 45667788999999999999998 8999999999 99
Q ss_pred CCCChHHHHHHHHHHHhccCCCC
Q psy6098 354 SGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 354 ~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
+++|+..++.+.++|.++...+.
T Consensus 432 ~gLD~~~~~~l~~~l~~l~~~g~ 454 (510)
T PRK15439 432 RGVDVSARNDIYQLIRSIAAQNV 454 (510)
T ss_pred cCcChhHHHHHHHHHHHHHhCCC
Confidence 99999999999999998865544
No 310
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.47 E-value=1.3e-13 Score=115.72 Aligned_cols=129 Identities=24% Similarity=0.271 Sum_probs=98.2
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccc------cchhHH-------------------
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKF------IGEGSR------------------- 291 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~------~~~~~~------------------- 291 (378)
++....|..+.|+|.+|+||||++|+|.-+-.|. .|.+++.++.-+. .....+
T Consensus 26 SL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLW 105 (256)
T COG4598 26 SLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLW 105 (256)
T ss_pred eeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchh
Confidence 4455678889999999999999999998766665 7888888772210 000111
Q ss_pred ---HHHH----------------HHHHh--hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCC
Q psy6098 292 ---MVRE----------------LFVMA--SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSS 348 (378)
Q Consensus 292 ---~v~~----------------~~~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~ 348 (378)
++-+ ..+.| .+.++++..+....+..+|+|++|++.++|+ ..|.|++|||
T Consensus 106 sHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDE------- 178 (256)
T COG4598 106 SHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDE------- 178 (256)
T ss_pred HHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecC-------
Confidence 1111 11111 2566677788888899999999999999998 8999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 349 RIESGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 349 r~~~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
||+++||+....++..++.|...|.|
T Consensus 179 ---PTSALDPElVgEVLkv~~~LAeEgrT 204 (256)
T COG4598 179 ---PTSALDPELVGEVLKVMQDLAEEGRT 204 (256)
T ss_pred ---CcccCCHHHHHHHHHHHHHHHHhCCe
Confidence 99999999999999999998877765
No 311
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.47 E-value=1e-13 Score=124.20 Aligned_cols=122 Identities=16% Similarity=0.028 Sum_probs=84.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEE-eccCcccccc-cch-hHHHHHHHHHH-------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIR-VSGSELVQKF-IGE-GSRMVRELFVM------------- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~-~~~~~l~~~~-~~~-~~~~v~~~~~~------------- 299 (378)
-+|.+.+|+.++|.||||+|||||+++|+|...+. .|. +++..+...+ ... ...++.+.+..
T Consensus 6 vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~ 85 (213)
T PRK15177 6 TDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFS 85 (213)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHH
Confidence 36789999999999999999999999999998765 443 5543321100 000 00012221111
Q ss_pred -hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHH
Q psy6098 300 -ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 369 (378)
Q Consensus 300 -a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~ 369 (378)
.......+.......+..+|.|++|++.++++ ..|.++++|| |++++|+..+..+.++|.
T Consensus 86 ~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDE----------P~~~lD~~~~~~~~~~l~ 148 (213)
T PRK15177 86 HFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADG----------KLYTGDNATQLRMQAALA 148 (213)
T ss_pred HHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECC----------CCccCCHHHHHHHHHHHH
Confidence 00111223334456778999999999999998 8999999999 999999999988888764
No 312
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.47 E-value=3.2e-13 Score=118.83 Aligned_cols=72 Identities=29% Similarity=0.459 Sum_probs=51.4
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcc
Q psy6098 202 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 281 (378)
Q Consensus 202 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l 281 (378)
.+.+++.+++|++||++++..++-.+....... .+-.+++|+||||+||||||+.||+.++.++...++..+
T Consensus 15 ~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i 86 (233)
T PF05496_consen 15 AERLRPKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAI 86 (233)
T ss_dssp HHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC-
T ss_pred HHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhh
Confidence 456788899999999999999876665422211 223479999999999999999999999999988888644
No 313
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.47 E-value=6.2e-14 Score=130.01 Aligned_cols=126 Identities=23% Similarity=0.257 Sum_probs=90.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc-------------ccchh-------HHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK-------------FIGEG-------SRMVRE 295 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~-------------~~~~~-------~~~v~~ 295 (378)
.+|.+.+|+.++|.||||+|||||+++|+|...+. .|.+++.++... |+.+. ...+.+
T Consensus 31 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~ 110 (268)
T PRK10419 31 VSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVRE 110 (268)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHH
Confidence 46789999999999999999999999999998765 677776543210 11110 011111
Q ss_pred HHH------------------Hhhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCC
Q psy6098 296 LFV------------------MASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGS 354 (378)
Q Consensus 296 ~~~------------------~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~ 354 (378)
.+. ...+..+.+. ......+..+|.|++|++.++++ ..|.||+||| |++
T Consensus 111 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDE----------Pt~ 180 (268)
T PRK10419 111 IIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDE----------AVS 180 (268)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeC----------CCc
Confidence 111 0012222222 23445667899999999999998 9999999999 999
Q ss_pred CCChHHHHHHHHHHHhccC
Q psy6098 355 GGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 355 ~~d~~~~~~~~~lL~~l~~ 373 (378)
++|+..+..+.++|.++..
T Consensus 181 ~LD~~~~~~~~~~l~~~~~ 199 (268)
T PRK10419 181 NLDLVLQAGVIRLLKKLQQ 199 (268)
T ss_pred ccCHHHHHHHHHHHHHHHH
Confidence 9999999999999988753
No 314
>PRK13409 putative ATPase RIL; Provisional
Probab=99.47 E-value=5.5e-14 Score=143.52 Aligned_cols=125 Identities=17% Similarity=0.065 Sum_probs=90.7
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEecc--CcccccccchhHHHHHHHHH------------Hhhh
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSG--SELVQKFIGEGSRMVRELFV------------MASL 302 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~--~~l~~~~~~~~~~~v~~~~~------------~a~~ 302 (378)
++.+.+|+.++|.||||+|||||+|+|+|.+.++ .|.++. .-+.+........++.+.+. ...+
T Consensus 359 s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L 438 (590)
T PRK13409 359 GGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEII 438 (590)
T ss_pred ceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHH
Confidence 5678899999999999999999999999998765 444321 10111110011112222221 1123
Q ss_pred hhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 303 KKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
..+.+.......+..||+|++|++.+|++ ..|.||+||| |++++|+..+..+.++|+++..
T Consensus 439 ~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDE----------Pt~~LD~~~~~~l~~~l~~l~~ 501 (590)
T PRK13409 439 KPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDE----------PSAHLDVEQRLAVAKAIRRIAE 501 (590)
T ss_pred HHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHHH
Confidence 34445555677788999999999999998 8999999999 9999999999999999998843
No 315
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.46 E-value=1.6e-13 Score=123.29 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=87.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----------c---ccchh----HHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----------K---FIGEG----SRMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----------~---~~~~~----~~~v~~~~ 297 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.+
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl 99 (218)
T cd03290 20 INIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENI 99 (218)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHH
Confidence 36788999999999999999999999999998765 66776543210 0 11111 11233222
Q ss_pred HHh----------hhhhhhhc-----------cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCC
Q psy6098 298 VMA----------SLKKLAFA-----------HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGS 354 (378)
Q Consensus 298 ~~a----------~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~ 354 (378)
... ....+.+. ......+..+|.|++|++.++++ .+|.||++|| |++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE----------Pt~ 169 (218)
T cd03290 100 TFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDD----------PFS 169 (218)
T ss_pred hhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC----------Ccc
Confidence 211 01111110 01123467899999999999998 8999999999 999
Q ss_pred CCChHHHHHHHH--HHHhccCCCC
Q psy6098 355 GGDSEVQRTMLE--LLNQLDGFEA 376 (378)
Q Consensus 355 ~~d~~~~~~~~~--lL~~l~~~~~ 376 (378)
++|+..+..+++ +++.+...+.
T Consensus 170 ~LD~~~~~~l~~~~ll~~~~~~~~ 193 (218)
T cd03290 170 ALDIHLSDHLMQEGILKFLQDDKR 193 (218)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCC
Confidence 999999888887 7776655443
No 316
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=1.1e-13 Score=132.10 Aligned_cols=126 Identities=20% Similarity=0.237 Sum_probs=91.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc------eEEEeccCcccc-----------c---ccchhH-------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC------TFIRVSGSELVQ-----------K---FIGEGS------- 290 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~------~~i~~~~~~l~~-----------~---~~~~~~------- 290 (378)
-+|.+.+|+.++|+|+||+|||||+++|+|++.+ ..|.+++.++.. . |+.+..
T Consensus 26 vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~ 105 (330)
T PRK15093 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPS 105 (330)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCcc
Confidence 4678999999999999999999999999999852 367777755421 0 111111
Q ss_pred HHHHHHHHH-----------------------hhhhhhhhcc---CchhhhhHhhhhhhhhhccccc--CCCeEEEEecC
Q psy6098 291 RMVRELFVM-----------------------ASLKKLAFAH---HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEI 342 (378)
Q Consensus 291 ~~v~~~~~~-----------------------a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEi 342 (378)
.++.+.+.. ..++.+.+.. .....+..||+|++|++.++++ ..|.||++||
T Consensus 106 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDE- 184 (330)
T PRK15093 106 ERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADE- 184 (330)
T ss_pred ccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeC-
Confidence 112221110 0122223332 1245667999999999999999 8999999999
Q ss_pred ccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 343 DSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 343 d~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 185 ---------Pts~LD~~~~~~i~~lL~~l~~ 206 (330)
T PRK15093 185 ---------PTNAMEPTTQAQIFRLLTRLNQ 206 (330)
T ss_pred ---------CCCcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999864
No 317
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=9.9e-14 Score=127.08 Aligned_cols=126 Identities=21% Similarity=0.265 Sum_probs=89.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC---c--eEEEeccCccccc----------ccchh----HHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---C--TFIRVSGSELVQK----------FIGEG----SRMVRELFV 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~---~--~~i~~~~~~l~~~----------~~~~~----~~~v~~~~~ 298 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+. + ..|.+++.++... |+.+. ..++.+.+.
T Consensus 21 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~ 100 (246)
T PRK14269 21 INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENIS 100 (246)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhh
Confidence 367889999999999999999999999999874 2 2777777654210 11110 012222221
Q ss_pred Hh-------------------hhhhhhhc----cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCC
Q psy6098 299 MA-------------------SLKKLAFA----HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESG 353 (378)
Q Consensus 299 ~a-------------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~ 353 (378)
.. .++.+.+. ......+..+|.|++|++.++++ ..|.|++||| |+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE----------P~ 170 (246)
T PRK14269 101 YAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDE----------PT 170 (246)
T ss_pred hHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC----------Cc
Confidence 11 11222221 12234567899999999999998 8999999999 99
Q ss_pred CCCChHHHHHHHHHHHhccC
Q psy6098 354 SGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 354 ~~~d~~~~~~~~~lL~~l~~ 373 (378)
+++|+..+..+.++|.++..
T Consensus 171 ~~LD~~~~~~l~~~l~~~~~ 190 (246)
T PRK14269 171 SALDPISSGVIEELLKELSH 190 (246)
T ss_pred ccCCHHHHHHHHHHHHHHhC
Confidence 99999999999999998753
No 318
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=1.3e-13 Score=127.40 Aligned_cols=125 Identities=18% Similarity=0.253 Sum_probs=89.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+ ..|.+++.++.. . |+.+. ..++.
T Consensus 27 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 106 (261)
T PRK14263 27 SHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIF 106 (261)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHH
Confidence 4678999999999999999999999999999864 377777765421 0 11100 11222
Q ss_pred HHHHHh----------------hhhhhhhcc----CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCC
Q psy6098 295 ELFVMA----------------SLKKLAFAH----HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIES 352 (378)
Q Consensus 295 ~~~~~a----------------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~ 352 (378)
+.+... .++.+.+.. .....+..+|.|++|+++++++ ..|.++++|| |
T Consensus 107 enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE----------P 176 (261)
T PRK14263 107 DNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDE----------P 176 (261)
T ss_pred HHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC----------C
Confidence 222211 011111111 1123456799999999999998 8999999999 9
Q ss_pred CCCCChHHHHHHHHHHHhcc
Q psy6098 353 GSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 353 ~~~~d~~~~~~~~~lL~~l~ 372 (378)
++++|+..+..+.++|.++.
T Consensus 177 tsgLD~~~~~~l~~~l~~~~ 196 (261)
T PRK14263 177 CSALDPIATRRVEELMVELK 196 (261)
T ss_pred CccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999885
No 319
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.46 E-value=1.9e-13 Score=125.51 Aligned_cols=124 Identities=20% Similarity=0.150 Sum_probs=88.4
Q ss_pred CCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEE-----------eccCcccc----------------cccchhH--
Q psy6098 242 IAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIR-----------VSGSELVQ----------------KFIGEGS-- 290 (378)
Q Consensus 242 ~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~-----------~~~~~l~~----------------~~~~~~~-- 290 (378)
+.+|+.++|.||||+|||||+++|+|.+.++ .|. +++.++.. .+.....
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 102 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKA 102 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchH
Confidence 6889999999999999999999999999876 553 44443311 0001000
Q ss_pred --HHHHHHHH--------HhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 291 --RMVRELFV--------MASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 291 --~~v~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
.++...+. ...++.+.+.......+..+|.|++|++.++++ ..|.+++||| |++++|+
T Consensus 103 ~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE----------Pts~LD~ 172 (255)
T cd03236 103 VKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDE----------PSSYLDI 172 (255)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC----------CCCCCCH
Confidence 01111100 111333344444566778999999999999998 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccCCC
Q psy6098 359 EVQRTMLELLNQLDGFE 375 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~~ 375 (378)
..+..+.++|+++...+
T Consensus 173 ~~~~~l~~~l~~l~~~~ 189 (255)
T cd03236 173 KQRLNAARLIRELAEDD 189 (255)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999876443
No 320
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.46 E-value=1.1e-13 Score=131.81 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=90.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-----eEEEeccCcccc-----------c---ccchhH--------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-----TFIRVSGSELVQ-----------K---FIGEGS-------- 290 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-----~~i~~~~~~l~~-----------~---~~~~~~-------- 290 (378)
-+|.+.+|+.++|.|+||||||||+++|+|++.+ ..|.+++.++.. . |+.+..
T Consensus 35 vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~ 114 (330)
T PRK09473 35 LNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYM 114 (330)
T ss_pred eEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCC
Confidence 4678999999999999999999999999999865 378887765521 0 111111
Q ss_pred ---HHHHHHHHHh--------------hhhhhhhcc---CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCC
Q psy6098 291 ---RMVRELFVMA--------------SLKKLAFAH---HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSS 348 (378)
Q Consensus 291 ---~~v~~~~~~a--------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~ 348 (378)
..+.+.+... .+..+.+.. .....+..+|+|++||+.++++ ..|.+|++||
T Consensus 115 ~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDE------- 187 (330)
T PRK09473 115 RVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADE------- 187 (330)
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC-------
Confidence 1111111100 122222221 1234677899999999999999 8999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 349 RIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 349 r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|...+..++++|.++..
T Consensus 188 ---Pts~LD~~~~~~i~~lL~~l~~ 209 (330)
T PRK09473 188 ---PTTALDVTVQAQIMTLLNELKR 209 (330)
T ss_pred ---CCccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998854
No 321
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.46 E-value=1.4e-13 Score=137.16 Aligned_cols=123 Identities=24% Similarity=0.279 Sum_probs=98.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEec-cCcc---ccc-------------cc----chhHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVS-GSEL---VQK-------------FI----GEGSRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~-~~~l---~~~-------------~~----~~~~~~v~ 294 (378)
.++.+.+|+.+++.||||||||||+|+|||++.-. .|.+- +.++ +++ |+ ..+.+.+.
T Consensus 412 l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~ 491 (604)
T COG4178 412 LNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELV 491 (604)
T ss_pred ceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHH
Confidence 46789999999999999999999999999998744 33222 2211 111 11 13456778
Q ss_pred HHHHHhhhhhhhhccCchhhhh-Hhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHh
Q psy6098 295 ELFVMASLKKLAFAHHPLLFWS-LLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ 370 (378)
Q Consensus 295 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~ 370 (378)
+++.++.+.++..+.+....|+ .||.|++|++..||- ++|+++|||| .|+++|+.....+.++|++
T Consensus 492 ~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDE----------ATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 492 AVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDE----------ATSALDEETEDRLYQLLKE 560 (604)
T ss_pred HHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEec----------chhccChHHHHHHHHHHHh
Confidence 8888888888877766667788 699999999999998 9999999999 8999999999999999886
No 322
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.45 E-value=1.1e-13 Score=127.78 Aligned_cols=125 Identities=22% Similarity=0.257 Sum_probs=88.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC-----c--eEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-----C--TFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~-----~--~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+. + ..|.+++.++.. . |+.+. ..++.
T Consensus 32 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 111 (260)
T PRK10744 32 INLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIY 111 (260)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHH
Confidence 467899999999999999999999999999975 1 367777644310 0 11110 01233
Q ss_pred HHHHHh------------------hhhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMA------------------SLKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+... .++.+.+ .......+..+|+|++|+++++++ ..|+||++||
T Consensus 112 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE--------- 182 (260)
T PRK10744 112 DNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDE--------- 182 (260)
T ss_pred HHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcC---------
Confidence 332211 0111111 112234566899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcc
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
|++++|+..+..+.++|.++.
T Consensus 183 -Pt~~LD~~~~~~l~~~L~~~~ 203 (260)
T PRK10744 183 -PCSALDPISTGRIEELITELK 203 (260)
T ss_pred -CCccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999885
No 323
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=1.6e-13 Score=126.07 Aligned_cols=126 Identities=21% Similarity=0.234 Sum_probs=89.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC-------ceEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-------CTFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~-------~~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
.++.+.+|+.++|+||||+|||||+++|+|.+. ...|.+++.++.. . |+.+. ..++.
T Consensus 23 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 102 (251)
T PRK14251 23 ISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVY 102 (251)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHH
Confidence 467889999999999999999999999999985 2367777654311 0 11100 01233
Q ss_pred HHHHHh------------------hhhhhhhc----cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMA------------------SLKKLAFA----HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a------------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+..+ .++.+.+. ......+..+|+|++|+++++++ ..|++|+|||
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDE--------- 173 (251)
T PRK14251 103 DNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDE--------- 173 (251)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecC---------
Confidence 322211 01111111 12345677899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..++.+.++|.++..
T Consensus 174 -P~~~LD~~~~~~l~~~l~~~~~ 195 (251)
T PRK14251 174 -PTSALDPISSSEIEETLMELKH 195 (251)
T ss_pred -CCccCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999998753
No 324
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.45 E-value=8.5e-14 Score=126.58 Aligned_cols=124 Identities=24% Similarity=0.256 Sum_probs=95.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc-------------------ccchhHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK-------------------FIGEGSRMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~-------------------~~~~~~~~v~~~ 296 (378)
.++.+..|++++|.|-+|||||||+|++.++..+. .|.+++.++... +--.+.++|.++
T Consensus 47 ~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~N 126 (386)
T COG4175 47 ASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLEN 126 (386)
T ss_pred ceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhh
Confidence 56788999999999999999999999999999887 899998877321 111122222221
Q ss_pred H-----------------HHhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 297 F-----------------VMASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 297 ~-----------------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
. ....++.+++..+.+.++..||+|++||+.+||+ ..|+||++|| |+|++|
T Consensus 127 v~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDE----------aFSALD 196 (386)
T COG4175 127 VAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDE----------AFSALD 196 (386)
T ss_pred hhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecC----------chhhcC
Confidence 1 1123556677888899999999999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhc
Q psy6098 358 SEVQRTMLELLNQL 371 (378)
Q Consensus 358 ~~~~~~~~~lL~~l 371 (378)
|-.+..+-.-|.++
T Consensus 197 PLIR~~mQdeLl~L 210 (386)
T COG4175 197 PLIRTEMQDELLEL 210 (386)
T ss_pred hHHHHHHHHHHHHH
Confidence 97766665444444
No 325
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=1.3e-13 Score=129.03 Aligned_cols=126 Identities=18% Similarity=0.283 Sum_probs=89.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+ ..|.+++.++.. . |+.+. ...+.
T Consensus 58 is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 137 (285)
T PRK14254 58 VSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIY 137 (285)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHH
Confidence 4678899999999999999999999999999752 267776644311 0 11110 01223
Q ss_pred HHHHHh----------------hhhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCC
Q psy6098 295 ELFVMA----------------SLKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIES 352 (378)
Q Consensus 295 ~~~~~a----------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~ 352 (378)
+.+... .+..+.+ .......+..||.|++|+++++++ ..|.||+||| |
T Consensus 138 enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDE----------P 207 (285)
T PRK14254 138 DNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDE----------P 207 (285)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC----------C
Confidence 222211 0111111 112345667899999999999998 8999999999 9
Q ss_pred CCCCChHHHHHHHHHHHhccC
Q psy6098 353 GSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 353 ~~~~d~~~~~~~~~lL~~l~~ 373 (378)
++++|+..+..+.++|.++..
T Consensus 208 ts~LD~~~~~~l~~~L~~~~~ 228 (285)
T PRK14254 208 ASALDPVATSKIEDLIEELAE 228 (285)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999998854
No 326
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.45 E-value=1e-13 Score=155.41 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=97.0
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc------c---ccchh-----HHHHHHHHHH---
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ------K---FIGEG-----SRMVRELFVM--- 299 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~------~---~~~~~-----~~~v~~~~~~--- 299 (378)
++++.+|+.++|.||||+|||||+|+|+|.+.++ .|.++|.++.. + |+.+. .-++++.+..
T Consensus 1959 Sf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~ 2038 (2272)
T TIGR01257 1959 CVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYAR 2038 (2272)
T ss_pred EEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHH
Confidence 4678899999999999999999999999999876 78888765521 0 11111 0122222211
Q ss_pred --------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 300 --------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 300 --------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
..++.+.+.......+..+|+|++|++++|++ ..|+|||||| |++|+|+..++.
T Consensus 2039 l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDE----------PTsGLDp~sr~~ 2108 (2272)
T TIGR01257 2039 LRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDE----------PTTGMDPQARRM 2108 (2272)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC----------CCCCCCHHHHHH
Confidence 11333445556677788999999999999998 8999999999 999999999999
Q ss_pred HHHHHHhccCCCC
Q psy6098 364 MLELLNQLDGFEA 376 (378)
Q Consensus 364 ~~~lL~~l~~~~~ 376 (378)
++++|.++...|.
T Consensus 2109 l~~lL~~l~~~g~ 2121 (2272)
T TIGR01257 2109 LWNTIVSIIREGR 2121 (2272)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999865454
No 327
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.45 E-value=1.2e-13 Score=140.33 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=92.2
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc---------cccc--------------------
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ---------KFIG-------------------- 287 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~---------~~~~-------------------- 287 (378)
++.+++|+.++|.||+|+|||||++.|+|.+.++ .|.+++.++.+ .|+.
T Consensus 355 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~ 434 (529)
T TIGR02868 355 SLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPD 434 (529)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCC
Confidence 5678899999999999999999999999999887 88888855421 0111
Q ss_pred hhHHHHHHHHHHhhhhhhhhccC--chh----hhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 288 EGSRMVRELFVMASLKKLAFAHH--PLL----FWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 288 ~~~~~v~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
.+...+.++.+.+.+..+....+ .+. .-..+|+|++||+++||+ .+|+|++||| ||+++|++
T Consensus 435 ~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE----------~TSaLD~~ 504 (529)
T TIGR02868 435 ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDE----------PTEHLDAG 504 (529)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeC----------CcccCCHH
Confidence 12234445555554443322111 111 123599999999999999 8999999999 99999999
Q ss_pred HHHHHHHHHHhcc
Q psy6098 360 VQRTMLELLNQLD 372 (378)
Q Consensus 360 ~~~~~~~lL~~l~ 372 (378)
....+.+.|.++.
T Consensus 505 te~~I~~~l~~~~ 517 (529)
T TIGR02868 505 TESELLEDLLAAL 517 (529)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888763
No 328
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=1.6e-13 Score=127.63 Aligned_cols=126 Identities=21% Similarity=0.259 Sum_probs=88.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+ ..|.+++.++.. . |+.+. ...+.
T Consensus 39 vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 118 (274)
T PRK14265 39 VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIY 118 (274)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccHH
Confidence 4678899999999999999999999999998752 367777654421 0 11110 01222
Q ss_pred HHHHHhh----------------hhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCC
Q psy6098 295 ELFVMAS----------------LKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIES 352 (378)
Q Consensus 295 ~~~~~a~----------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~ 352 (378)
+.+.... +..+.+ .......+..+|.|++|+++++++ ..|+||+||| |
T Consensus 119 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDE----------P 188 (274)
T PRK14265 119 ENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDE----------P 188 (274)
T ss_pred HHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeC----------C
Confidence 2222110 111111 122334566799999999999998 8999999999 9
Q ss_pred CCCCChHHHHHHHHHHHhccC
Q psy6098 353 GSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 353 ~~~~d~~~~~~~~~lL~~l~~ 373 (378)
++++|+..+..+.++|.++..
T Consensus 189 t~~LD~~~~~~l~~~L~~~~~ 209 (274)
T PRK14265 189 CSALDPISTRQVEELCLELKE 209 (274)
T ss_pred cccCCHHHHHHHHHHHHHHhc
Confidence 999999999999999998853
No 329
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=1.3e-13 Score=128.01 Aligned_cols=126 Identities=21% Similarity=0.265 Sum_probs=88.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC-----c--eEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-----C--TFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~-----~--~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
-++.+.+|+.++|.||||+|||||+++|+|... + ..|.+++.++.. . |+.+. ..++.
T Consensus 40 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 119 (268)
T PRK14248 40 ISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIY 119 (268)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHH
Confidence 467889999999999999999999999999753 2 367776654321 0 11110 01233
Q ss_pred HHHHHh------------------hhhhhhhc----cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMA------------------SLKKLAFA----HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a------------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+... .+..+.+. ......+..+|+|++|+++++++ ..|.||+|||
T Consensus 120 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDE--------- 190 (268)
T PRK14248 120 NNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDE--------- 190 (268)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcC---------
Confidence 322211 01111111 11234566899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 191 -Pt~~LD~~~~~~l~~~l~~~~~ 212 (268)
T PRK14248 191 -PASALDPISNAKIEELITELKE 212 (268)
T ss_pred -CCcccCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998853
No 330
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.45 E-value=9.6e-14 Score=140.72 Aligned_cols=125 Identities=18% Similarity=0.170 Sum_probs=88.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhc--Cce--EEEec-----------------------cCcc-------c-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--ECT--FIRVS-----------------------GSEL-------V- 282 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~--~~~--~i~~~-----------------------~~~l-------~- 282 (378)
-+|.+.+|+.++|+||||||||||+|+|+|.. .+. .|.++ +.++ .
T Consensus 19 is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 98 (520)
T TIGR03269 19 ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWN 98 (520)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhc
Confidence 46788999999999999999999999999996 443 56554 1100 0
Q ss_pred ---------c---cccchh------HHHHHHHHHHh-----------------hhhhhhhccCchhhhhHhhhhhhhhhc
Q psy6098 283 ---------Q---KFIGEG------SRMVRELFVMA-----------------SLKKLAFAHHPLLFWSLLTILTNTIVC 327 (378)
Q Consensus 283 ---------~---~~~~~~------~~~v~~~~~~a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (378)
. .|+.+. ..++.+.+... .+..+.+.......+..||+|++|++.
T Consensus 99 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~ 178 (520)
T TIGR03269 99 LSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVV 178 (520)
T ss_pred cCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHH
Confidence 0 011110 01222222110 123333444445667899999999999
Q ss_pred cccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 328 NFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 328 ~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
++++ ..|.|||||| |++++|+..+..+.++|.++.
T Consensus 179 iA~al~~~p~lllLDE----------Pt~~LD~~~~~~l~~~l~~l~ 215 (520)
T TIGR03269 179 LARQLAKEPFLFLADE----------PTGTLDPQTAKLVHNALEEAV 215 (520)
T ss_pred HHHHHhcCCCEEEeeC----------CcccCCHHHHHHHHHHHHHHH
Confidence 9998 8999999999 999999999999999999884
No 331
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.45 E-value=1.7e-13 Score=140.87 Aligned_cols=125 Identities=22% Similarity=0.232 Sum_probs=90.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccch-----------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGE----------------- 288 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~----------------- 288 (378)
-++.+++|+.++|.||+|+|||||+++|+|.+.+. .|.+++.++.+- |+.+
T Consensus 362 i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~ 441 (582)
T PRK11176 362 INFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYAR 441 (582)
T ss_pred ceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCC
Confidence 35678899999999999999999999999999886 888888765210 1111
Q ss_pred ----hHHHHHHHHHHhhhhhhhhcc--Cchh----hhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCC
Q psy6098 289 ----GSRMVRELFVMASLKKLAFAH--HPLL----FWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGG 356 (378)
Q Consensus 289 ----~~~~v~~~~~~a~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~ 356 (378)
+...+.+..+.+.+..+.... -... .-..+|+|++||++++|+ .+|+|++||| |++++
T Consensus 442 ~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDE----------ptsaL 511 (582)
T PRK11176 442 TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDE----------ATSAL 511 (582)
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEEC----------ccccC
Confidence 222333333433333221111 0111 124599999999999999 8999999999 99999
Q ss_pred ChHHHHHHHHHHHhcc
Q psy6098 357 DSEVQRTMLELLNQLD 372 (378)
Q Consensus 357 d~~~~~~~~~lL~~l~ 372 (378)
|+.+...+.+.|.++.
T Consensus 512 D~~t~~~i~~~l~~~~ 527 (582)
T PRK11176 512 DTESERAIQAALDELQ 527 (582)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999888763
No 332
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.45 E-value=1.3e-13 Score=126.63 Aligned_cols=126 Identities=24% Similarity=0.218 Sum_probs=88.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC--c-----eEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE--C-----TFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~--~-----~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
-++.+.+|+.++|.||||+|||||+++|+|... + ..|.+++.++.. . |+.+. ..++.
T Consensus 24 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 103 (252)
T PRK14239 24 VSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIY 103 (252)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcHH
Confidence 467889999999999999999999999999842 3 367777654311 0 11111 01233
Q ss_pred HHHHHhh------------------hhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMAS------------------LKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a~------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+.... ++.+.+ .......+..+|.|++|+++++++ ..|+||+|||
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE--------- 174 (252)
T PRK14239 104 ENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDE--------- 174 (252)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---------
Confidence 3332110 011111 112234566899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 175 -Pt~~LD~~~~~~l~~~l~~~~~ 196 (252)
T PRK14239 175 -PTSALDPISAGKIEETLLGLKD 196 (252)
T ss_pred -CccccCHHHHHHHHHHHHHHhh
Confidence 9999999999999999998753
No 333
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.45 E-value=1e-13 Score=131.90 Aligned_cols=114 Identities=23% Similarity=0.266 Sum_probs=84.1
Q ss_pred EeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----c---ccch-----hHHHHHHHHHHh--------------
Q psy6098 250 LYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----K---FIGE-----GSRMVRELFVMA-------------- 300 (378)
Q Consensus 250 l~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----~---~~~~-----~~~~v~~~~~~a-------------- 300 (378)
|.||||||||||+++|+|...+. .|.+++.++.. . |+.+ ...++.+.+...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 57999999999999999998875 78887754421 0 1111 111233332211
Q ss_pred ---hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 301 ---SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 301 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
.+..+.+.......+..+|+|++|+++++++ ..|++++||| |++++|+..+..+.++|.++..
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDE----------P~s~LD~~~~~~l~~~l~~l~~ 148 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDE----------PLSALDKKLRDQMQLELKTIQE 148 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC----------CCccCCHHHHHHHHHHHHHHHH
Confidence 1233344555667788999999999999998 8999999999 9999999999999999988753
No 334
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.45 E-value=1.3e-13 Score=139.05 Aligned_cols=130 Identities=18% Similarity=0.164 Sum_probs=93.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc----eEEEeccCcccc--------c---ccchhH-----HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC----TFIRVSGSELVQ--------K---FIGEGS-----RMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~----~~i~~~~~~l~~--------~---~~~~~~-----~~v~~~~ 297 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+ ..|.+++.++.. . |+.+.. .++.+.+
T Consensus 20 isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 99 (500)
T TIGR02633 20 IDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENI 99 (500)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHH
Confidence 4678899999999999999999999999999875 377777644311 0 111110 1122221
Q ss_pred HH---------------------hhhhhhhhccCc-hhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCC
Q psy6098 298 VM---------------------ASLKKLAFAHHP-LLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESG 353 (378)
Q Consensus 298 ~~---------------------a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~ 353 (378)
.. ..++.+.+.... ...+..||+|++|++.++++ ..|.|||||| |+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDE----------Pt 169 (500)
T TIGR02633 100 FLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDE----------PS 169 (500)
T ss_pred HhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeC----------CC
Confidence 11 112223333332 35688999999999999998 8999999999 99
Q ss_pred CCCChHHHHHHHHHHHhccCCCCC
Q psy6098 354 SGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 354 ~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
+++|+..+..+.++|.++...+.|
T Consensus 170 ~~LD~~~~~~l~~~l~~l~~~g~t 193 (500)
T TIGR02633 170 SSLTEKETEILLDIIRDLKAHGVA 193 (500)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCE
Confidence 999999999999999988655543
No 335
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=2.1e-13 Score=125.16 Aligned_cols=126 Identities=22% Similarity=0.274 Sum_probs=89.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+ ..|.+++.++.. . |+.+. ...+.
T Consensus 22 i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 101 (250)
T PRK14262 22 VTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIY 101 (250)
T ss_pred eeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccHH
Confidence 4678999999999999999999999999998762 377777644321 0 11110 01233
Q ss_pred HHHHHhh------------------hhhhhhc----cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMAS------------------LKKLAFA----HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a~------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+.... +..+.+. ......+..+|.|++|++.++++ ..|.||+|||
T Consensus 102 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDE--------- 172 (250)
T PRK14262 102 DNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDE--------- 172 (250)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeC---------
Confidence 3222110 1111111 12345667899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 173 -P~~~LD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14262 173 -PTSALDPIATQRIEKLLEELSE 194 (250)
T ss_pred -CccccCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998753
No 336
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.45 E-value=2e-13 Score=125.21 Aligned_cols=130 Identities=17% Similarity=0.163 Sum_probs=87.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhc--Cce--EEEeccCcccc--------c---ccchhHH-----HHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--ECT--FIRVSGSELVQ--------K---FIGEGSR-----MVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~--~~~--~i~~~~~~l~~--------~---~~~~~~~-----~v~~~~ 297 (378)
.++.+.+|+.++|.||||+|||||+++|+|.. .+. .|.+++.++.. . |+.+... ......
T Consensus 20 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 99 (248)
T PRK09580 20 LNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFL 99 (248)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHH
Confidence 36778899999999999999999999999995 343 77887754421 1 1111100 000000
Q ss_pred H----------------H--------hhhhhhhhc-cCchhhhh-Hhhhhhhhhhccccc--CCCeEEEEecCccccCCC
Q psy6098 298 V----------------M--------ASLKKLAFA-HHPLLFWS-LLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSR 349 (378)
Q Consensus 298 ~----------------~--------a~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r 349 (378)
. . ..+..+.+. ......+. .+|+|++|++.++++ .+|.||+|||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDE-------- 171 (248)
T PRK09580 100 QTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE-------- 171 (248)
T ss_pred HHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeC--------
Confidence 0 0 000111110 11122232 699999999999998 8999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 350 IESGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 350 ~~~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
|++++|+..+..+.++|.++...+.|
T Consensus 172 --Pt~~LD~~~~~~l~~~l~~l~~~~~t 197 (248)
T PRK09580 172 --SDSGLDIDALKIVADGVNSLRDGKRS 197 (248)
T ss_pred --CCccCCHHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999888655443
No 337
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.45 E-value=9.2e-14 Score=128.37 Aligned_cols=67 Identities=24% Similarity=0.322 Sum_probs=60.2
Q ss_pred CCCCCCCChhHHHHHHHhhcc-------CceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT-------ECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIK 77 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~-------~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~ 77 (378)
++.||||||||++|+++|+++ ..+|+++++++++++|+|+++.+++++|+.|. ++||||||+|.+..
T Consensus 46 ll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~------~~VL~IDE~~~L~~ 119 (261)
T TIGR02881 46 IFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL------GGVLFIDEAYSLAR 119 (261)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc------CCEEEEechhhhcc
Confidence 589999999999999999874 24899999999999999999999999998875 46999999999963
No 338
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=1.8e-13 Score=126.39 Aligned_cols=126 Identities=21% Similarity=0.276 Sum_probs=89.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+ ..|.+++.++.. . |+.+. ...+.
T Consensus 31 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 110 (259)
T PRK14274 31 INLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIF 110 (259)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHH
Confidence 4678899999999999999999999999999862 377777654421 0 11110 01233
Q ss_pred HHHHHhh------------------hhhhhhc----cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMAS------------------LKKLAFA----HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a~------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+.... +..+.+. ......+..+|.|++|++.++++ ..|.|++|||
T Consensus 111 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDE--------- 181 (259)
T PRK14274 111 DNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDE--------- 181 (259)
T ss_pred HHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---------
Confidence 3222110 1111111 12345667899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 182 -Pt~~LD~~~~~~l~~~l~~~~~ 203 (259)
T PRK14274 182 -PTSALDPVSTRKIEELILKLKE 203 (259)
T ss_pred -CcccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998854
No 339
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.45 E-value=1.1e-13 Score=132.99 Aligned_cols=130 Identities=19% Similarity=0.221 Sum_probs=103.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcc----------------cccccchhHHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL----------------VQKFIGEGSRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l----------------~~~~~~~~~~~v~~~~~~ 299 (378)
-++++.+|++-+|+|.||+|||||+++|.|.+.|+ .|.++|..+ +|++.--..-++.|++..
T Consensus 23 V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiL 102 (501)
T COG3845 23 VSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIIL 102 (501)
T ss_pred eeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhh
Confidence 46789999999999999999999999999999998 899988765 122211111122222221
Q ss_pred h--------------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 300 A--------------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 300 a--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+ ...+.++..++...+..+|.|++|+++++++ ..+.+|+||| ||+-+.
T Consensus 103 g~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDE----------PTaVLT 172 (501)
T COG3845 103 GLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDE----------PTAVLT 172 (501)
T ss_pred cCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcC----------CcccCC
Confidence 1 1233456788888999999999999999999 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccCCCCC
Q psy6098 358 SEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~~~~~ 377 (378)
|.....+++.|++|...|+|
T Consensus 173 P~E~~~lf~~l~~l~~~G~t 192 (501)
T COG3845 173 PQEADELFEILRRLAAEGKT 192 (501)
T ss_pred HHHHHHHHHHHHHHHHCCCE
Confidence 99999999999999988876
No 340
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.45 E-value=8.4e-14 Score=143.71 Aligned_cols=126 Identities=21% Similarity=0.287 Sum_probs=92.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------------cccchhH-------HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------------KFIGEGS-------RMVRE 295 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------------~~~~~~~-------~~v~~ 295 (378)
-+|.+.+|+.++|.||||||||||+|+|+|++.+. .|.+++.++.. .|+.+.. .++.+
T Consensus 343 vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~ 422 (623)
T PRK10261 343 VSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGD 422 (623)
T ss_pred eEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHH
Confidence 36778899999999999999999999999998765 77777654311 0111110 12222
Q ss_pred HHHH------------------hhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCC
Q psy6098 296 LFVM------------------ASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGS 354 (378)
Q Consensus 296 ~~~~------------------a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~ 354 (378)
.+.. ..+..+.+. ......+..||+|++|+++++++ ..|.|||+|| |++
T Consensus 423 ~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDE----------Pts 492 (623)
T PRK10261 423 SIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADE----------AVS 492 (623)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC----------Ccc
Confidence 2211 012223332 23456678999999999999998 8999999999 999
Q ss_pred CCChHHHHHHHHHHHhccC
Q psy6098 355 GGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 355 ~~d~~~~~~~~~lL~~l~~ 373 (378)
++|+..+..+.++|.++..
T Consensus 493 ~LD~~~~~~i~~ll~~l~~ 511 (623)
T PRK10261 493 ALDVSIRGQIINLLLDLQR 511 (623)
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 341
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.5e-13 Score=133.32 Aligned_cols=127 Identities=20% Similarity=0.197 Sum_probs=97.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------cccch-----------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------KFIGE----------------- 288 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~~~~~----------------- 288 (378)
-++.+++|+.++|.|++|||||||+++|+|.+.++ .|.+++.++.. .|+++
T Consensus 340 l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~ 419 (559)
T COG4988 340 LNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLAR 419 (559)
T ss_pred ceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccC
Confidence 35678999999999999999999999999999976 89999876621 13332
Q ss_pred ---hHHHHHHHHHHhhhhhhhhc-cCchhhhh----Hhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 289 ---GSRMVRELFVMASLKKLAFA-HHPLLFWS----LLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 289 ---~~~~v~~~~~~a~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
+...+.++.+++.+..+... .-.+..+. .+|+|+.||+..+|+ ++++|++||| ||+++|.
T Consensus 420 ~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDE----------pTA~LD~ 489 (559)
T COG4988 420 PDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDE----------PTAHLDA 489 (559)
T ss_pred CcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecC----------CccCCCH
Confidence 22345555555555444332 11222233 499999999999999 7899999999 9999999
Q ss_pred HHHHHHHHHHHhccCC
Q psy6098 359 EVQRTMLELLNQLDGF 374 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~ 374 (378)
++...+.+.|.++-..
T Consensus 490 etE~~i~~~l~~l~~~ 505 (559)
T COG4988 490 ETEQIILQALQELAKQ 505 (559)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999887654
No 342
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.44 E-value=1.6e-13 Score=127.42 Aligned_cols=125 Identities=19% Similarity=0.179 Sum_probs=89.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce-EEEeccCcccc----------cccch----hHHHHHHHHHHh--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-FIRVSGSELVQ----------KFIGE----GSRMVRELFVMA-- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-~i~~~~~~l~~----------~~~~~----~~~~v~~~~~~a-- 300 (378)
-+|.+.+|+.++|+||||+|||||+++|+|++... .|.+++.++.. .|+.+ ...++++.+...
T Consensus 23 isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~ 102 (275)
T cd03289 23 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGK 102 (275)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccC
Confidence 46789999999999999999999999999998733 78888765421 01111 112344433210
Q ss_pred --------hhhhhhhccCchhhhhH-----------hhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 301 --------SLKKLAFAHHPLLFWSL-----------LTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 301 --------~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
.++.+.+.......+.. +|.|++|+++++|+ ..|.||+||| |++++|+.
T Consensus 103 ~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDE----------pts~LD~~ 172 (275)
T cd03289 103 WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDE----------PSAHLDPI 172 (275)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC----------ccccCCHH
Confidence 11222222222222333 99999999999999 8999999999 99999999
Q ss_pred HHHHHHHHHHhcc
Q psy6098 360 VQRTMLELLNQLD 372 (378)
Q Consensus 360 ~~~~~~~lL~~l~ 372 (378)
....+.++|.++.
T Consensus 173 ~~~~l~~~l~~~~ 185 (275)
T cd03289 173 TYQVIRKTLKQAF 185 (275)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
No 343
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.44 E-value=2.3e-13 Score=125.91 Aligned_cols=126 Identities=20% Similarity=0.257 Sum_probs=89.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
-++.+.+|+.++|.||||+|||||+++|+|..++ ..|.+++.++.. . |+.+. ...+.
T Consensus 29 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 108 (264)
T PRK14243 29 VWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIY 108 (264)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccccHH
Confidence 4678899999999999999999999999998652 377777754410 0 11110 01333
Q ss_pred HHHHHhh----------------hhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCC
Q psy6098 295 ELFVMAS----------------LKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIES 352 (378)
Q Consensus 295 ~~~~~a~----------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~ 352 (378)
+.+.... +..+.+ .......+..+|+|++|+++++++ ..|+||+||| |
T Consensus 109 enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE----------P 178 (264)
T PRK14243 109 DNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDE----------P 178 (264)
T ss_pred HHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC----------C
Confidence 3322110 011111 112334566799999999999999 8999999999 9
Q ss_pred CCCCChHHHHHHHHHHHhccC
Q psy6098 353 GSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 353 ~~~~d~~~~~~~~~lL~~l~~ 373 (378)
++++|+..+..+.++|.++..
T Consensus 179 t~~LD~~~~~~l~~~L~~~~~ 199 (264)
T PRK14243 179 CSALDPISTLRIEELMHELKE 199 (264)
T ss_pred CccCCHHHHHHHHHHHHHHhc
Confidence 999999999999999998754
No 344
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.44 E-value=1.6e-13 Score=114.43 Aligned_cols=126 Identities=21% Similarity=0.221 Sum_probs=97.9
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc-------------------ccchhH----H--
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK-------------------FIGEGS----R-- 291 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~-------------------~~~~~~----~-- 291 (378)
++.+.+|+.++|+||+|+|||||+-.+||+-.+. .|.+.|..+... +.-... .
T Consensus 30 ~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV 109 (228)
T COG4181 30 ELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENV 109 (228)
T ss_pred eEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhc
Confidence 5678899999999999999999999999998776 788888766321 100000 0
Q ss_pred ---------HHHHHHHHh--hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 292 ---------MVRELFVMA--SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 292 ---------~v~~~~~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
..++.+..| .+..+++.......+..+|+|++||++++|+ ..|.|+|-|| ||..+|.
T Consensus 110 ~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADE----------PTGNLD~ 179 (228)
T COG4181 110 ALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADE----------PTGNLDR 179 (228)
T ss_pred cchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccC----------CCCCcch
Confidence 012223222 3566677888888999999999999999998 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccCC
Q psy6098 359 EVQRTMLELLNQLDGF 374 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~ 374 (378)
.+-..+..+|-.+...
T Consensus 180 ~Tg~~iaDLlF~lnre 195 (228)
T COG4181 180 ATGDKIADLLFALNRE 195 (228)
T ss_pred hHHHHHHHHHHHHhhh
Confidence 9999999998877643
No 345
>CHL00181 cbbX CbbX; Provisional
Probab=99.44 E-value=6.4e-14 Score=130.61 Aligned_cols=68 Identities=22% Similarity=0.231 Sum_probs=60.7
Q ss_pred CCCCCCCChhHHHHHHHhhccC-------ceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTE-------CTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIK 77 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~-------~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~ 77 (378)
++.||||||||++||++|.++. .+|++|++++++++|+|+++.+++.+|+.|. |+||||||+|.++.
T Consensus 63 ll~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~------ggVLfIDE~~~l~~ 136 (287)
T CHL00181 63 SFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM------GGVLFIDEAYYLYK 136 (287)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc------CCEEEEEccchhcc
Confidence 6789999999999999998762 3699999999999999999999999998875 56999999999975
Q ss_pred c
Q psy6098 78 S 78 (378)
Q Consensus 78 ~ 78 (378)
.
T Consensus 137 ~ 137 (287)
T CHL00181 137 P 137 (287)
T ss_pred C
Confidence 3
No 346
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=1.7e-13 Score=126.05 Aligned_cols=126 Identities=19% Similarity=0.269 Sum_probs=88.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC-------ceEEEeccCcccc---------c---ccch-----hHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-------CTFIRVSGSELVQ---------K---FIGE-----GSRMV 293 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~-------~~~i~~~~~~l~~---------~---~~~~-----~~~~v 293 (378)
.++.+.+|+.++|+||||+|||||+++|+|.+. ...|.+++.++.. . |+.+ ...++
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 102 (252)
T PRK14256 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSI 102 (252)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcH
Confidence 467889999999999999999999999999974 2367777654421 0 1110 00122
Q ss_pred HHHHHHh------------------hhhhhhhc----cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCC
Q psy6098 294 RELFVMA------------------SLKKLAFA----HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSR 349 (378)
Q Consensus 294 ~~~~~~a------------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r 349 (378)
.+.+... .++.+.+. ......+..+|.|++|+++++++ ..|.||+|||
T Consensus 103 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE-------- 174 (252)
T PRK14256 103 YDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDE-------- 174 (252)
T ss_pred HHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcC--------
Confidence 2222110 01111111 12234566899999999999998 8999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhccC
Q psy6098 350 IESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 350 ~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 175 --P~~gLD~~~~~~l~~~l~~~~~ 196 (252)
T PRK14256 175 --PASALDPISTLKIEELIEELKE 196 (252)
T ss_pred --CcccCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999998854
No 347
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=2.3e-13 Score=124.99 Aligned_cols=126 Identities=17% Similarity=0.226 Sum_probs=88.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC-------ceEEEeccCcccc---------c---ccchhH----HHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-------CTFIRVSGSELVQ---------K---FIGEGS----RMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~-------~~~i~~~~~~l~~---------~---~~~~~~----~~v~ 294 (378)
-+|.+.+|+.++|.||||+|||||+++|+|... ...|.+++.++.. . |+.+.. ..+.
T Consensus 24 is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 103 (251)
T PRK14244 24 INLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIY 103 (251)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccCCHH
Confidence 467889999999999999999999999999975 2367776644311 0 111100 0222
Q ss_pred HHHHHh-------------------hhhhhhhcc----CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCC
Q psy6098 295 ELFVMA-------------------SLKKLAFAH----HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSR 349 (378)
Q Consensus 295 ~~~~~a-------------------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r 349 (378)
+.+... .++.+.+.. .....+..+|+|++|++.++++ ..|+||+|||
T Consensus 104 ~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE-------- 175 (251)
T PRK14244 104 DNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDE-------- 175 (251)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeC--------
Confidence 222111 012222211 1234567899999999999998 8999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhccC
Q psy6098 350 IESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 350 ~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 176 --Pt~~LD~~~~~~l~~~l~~~~~ 197 (251)
T PRK14244 176 --PCSALDPVATNVIENLIQELKK 197 (251)
T ss_pred --CCccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998853
No 348
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.44 E-value=2.7e-13 Score=124.96 Aligned_cols=125 Identities=19% Similarity=0.191 Sum_probs=87.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccchh----HHHHHHHH----
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGEG----SRMVRELF---- 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~~----~~~v~~~~---- 297 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+++.++... |+.+. ..++.+.+
T Consensus 40 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~ 119 (257)
T cd03288 40 VKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPEC 119 (257)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCC
Confidence 36788999999999999999999999999998765 677766544210 11100 01222211
Q ss_pred -----------HHhhhhhh------hhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 298 -----------VMASLKKL------AFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 298 -----------~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
....+... ............+|.|++|+++++++ ..|++|+||| |++++|+
T Consensus 120 ~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE----------Pt~gLD~ 189 (257)
T cd03288 120 KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDE----------ATASIDM 189 (257)
T ss_pred CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC----------CccCCCH
Confidence 11111110 01111223345799999999999998 8999999999 9999999
Q ss_pred HHHHHHHHHHHhcc
Q psy6098 359 EVQRTMLELLNQLD 372 (378)
Q Consensus 359 ~~~~~~~~lL~~l~ 372 (378)
..+..+.++|.++.
T Consensus 190 ~~~~~l~~~l~~~~ 203 (257)
T cd03288 190 ATENILQKVVMTAF 203 (257)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
No 349
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=1.8e-13 Score=138.21 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=94.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-e--EEEeccCcccc-----------cccchh--------HHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-T--FIRVSGSELVQ-----------KFIGEG--------SRMVRE 295 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-~--~i~~~~~~l~~-----------~~~~~~--------~~~v~~ 295 (378)
-+|.+.+|+.++|.||||+|||||+|+|+|.+.+ + .|.+++.++.. .|+.+. ...+.+
T Consensus 281 vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e 360 (506)
T PRK13549 281 VSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGK 360 (506)
T ss_pred eeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHH
Confidence 3678999999999999999999999999999873 3 67776543210 011111 011111
Q ss_pred HHH----------------------Hhhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 296 LFV----------------------MASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 296 ~~~----------------------~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
.+. ...+..+.+. ......+..||+|++|++.++++ ..|.||||||
T Consensus 361 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDE--------- 431 (506)
T PRK13549 361 NITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDE--------- 431 (506)
T ss_pred HhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcC---------
Confidence 111 0112333443 34567788999999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
|++++|+..++.+.++|.++...+.|
T Consensus 432 -Pt~~LD~~~~~~l~~~l~~l~~~g~t 457 (506)
T PRK13549 432 -PTRGIDVGAKYEIYKLINQLVQQGVA 457 (506)
T ss_pred -CCCCcCHhHHHHHHHHHHHHHHCCCE
Confidence 99999999999999999988655543
No 350
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=2.3e-13 Score=140.71 Aligned_cols=125 Identities=16% Similarity=0.129 Sum_probs=88.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCc----cccc----------ccchhHHH---H-----
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSE----LVQK----------FIGEGSRM---V----- 293 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~----l~~~----------~~~~~~~~---v----- 293 (378)
-+|.+.+|+.++|+||||||||||+|+|+|.+.++ .|.+++.. +.+. ++.+.... +
T Consensus 20 vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 99 (638)
T PRK10636 20 ATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLH 99 (638)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHH
Confidence 46789999999999999999999999999998775 66665532 1110 01000000 0
Q ss_pred --------------HHHHH-----------Hhhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccc
Q psy6098 294 --------------RELFV-----------MASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSI 345 (378)
Q Consensus 294 --------------~~~~~-----------~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~ 345 (378)
...+. ...+..+++. ......+..||+|++|+++++++ ..|+||||||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDE---- 175 (638)
T PRK10636 100 DANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDE---- 175 (638)
T ss_pred HHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcC----
Confidence 00000 0012233333 34466788999999999999998 8999999999
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 346 GSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 346 ~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
|++++|+.....+.++|.++.
T Consensus 176 ------Ptn~LD~~~~~~L~~~L~~~~ 196 (638)
T PRK10636 176 ------PTNHLDLDAVIWLEKWLKSYQ 196 (638)
T ss_pred ------CCCcCCHHHHHHHHHHHHhCC
Confidence 999999999999999998763
No 351
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.44 E-value=2e-13 Score=142.84 Aligned_cols=123 Identities=24% Similarity=0.160 Sum_probs=91.5
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccc-------------------
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIG------------------- 287 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~------------------- 287 (378)
++.+++|+.+++.||+|||||||+|.|+|.+.+. .|.+++.++.+- |+.
T Consensus 473 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~ 552 (686)
T TIGR03797 473 SLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP 552 (686)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC
Confidence 5678899999999999999999999999999886 899988766210 111
Q ss_pred hhHHHHHHHHHHhhhhhhhhcc------CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 288 EGSRMVRELFVMASLKKLAFAH------HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 288 ~~~~~v~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
.+...+.++.+.+.+..+.... .....-..+|+|++||+++||+ .+|+|++||| |++++|+.
T Consensus 553 ~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDE----------pTS~LD~~ 622 (686)
T TIGR03797 553 LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDE----------ATSALDNR 622 (686)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC----------CccCCCHH
Confidence 1222334444444333322111 1111224699999999999999 9999999999 99999999
Q ss_pred HHHHHHHHHHhc
Q psy6098 360 VQRTMLELLNQL 371 (378)
Q Consensus 360 ~~~~~~~lL~~l 371 (378)
..+.+.+.|..+
T Consensus 623 te~~i~~~L~~~ 634 (686)
T TIGR03797 623 TQAIVSESLERL 634 (686)
T ss_pred HHHHHHHHHHHh
Confidence 999999988876
No 352
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.44 E-value=2.2e-13 Score=126.30 Aligned_cols=126 Identities=21% Similarity=0.242 Sum_probs=90.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc------------cccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ------------KFIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~------------~~~~~~----~~~v~ 294 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+ ..|.+++.++.. .|+.+. ..++.
T Consensus 39 vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 118 (267)
T PRK14237 39 IDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIY 118 (267)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHH
Confidence 4678899999999999999999999999999852 277777755421 011111 01333
Q ss_pred HHHHHhh------------------hhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMAS------------------LKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a~------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+.... +..+.+ .......+..+|.|++|+++++++ ..|.+|+|||
T Consensus 119 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE--------- 189 (267)
T PRK14237 119 ENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDE--------- 189 (267)
T ss_pred HHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---------
Confidence 3332210 111111 112345567899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 190 -Pt~~LD~~~~~~l~~~l~~~~~ 211 (267)
T PRK14237 190 -PASALDPISTMQLEETMFELKK 211 (267)
T ss_pred -CcccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998853
No 353
>PRK13409 putative ATPase RIL; Provisional
Probab=99.44 E-value=2.1e-13 Score=139.25 Aligned_cols=125 Identities=20% Similarity=0.147 Sum_probs=93.0
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEE-----------eccCcccc----------------cccchhHH
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIR-----------VSGSELVQ----------------KFIGEGSR 291 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~-----------~~~~~l~~----------------~~~~~~~~ 291 (378)
.+.+|+.++|+||||+|||||+|+|+|.+.++ .|. ++|.++.. .++.....
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~ 174 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPK 174 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhh
Confidence 57789999999999999999999999998876 454 55554311 01111110
Q ss_pred ----HHHHHHHH--------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 292 ----MVRELFVM--------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 292 ----~v~~~~~~--------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
++.+.+.. ..+..+.+.......+..||+|++|+++++++ ..|.|+|||| |++++|
T Consensus 175 ~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDE----------Pts~LD 244 (590)
T PRK13409 175 VFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDE----------PTSYLD 244 (590)
T ss_pred hhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC----------CCCCCC
Confidence 23333221 12334455556677888999999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccCCCC
Q psy6098 358 SEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~~~~ 376 (378)
+..+..+.++|.++.. +.
T Consensus 245 ~~~~~~l~~~i~~l~~-g~ 262 (590)
T PRK13409 245 IRQRLNVARLIRELAE-GK 262 (590)
T ss_pred HHHHHHHHHHHHHHHC-CC
Confidence 9999999999998865 44
No 354
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.44 E-value=2.2e-13 Score=139.00 Aligned_cols=124 Identities=19% Similarity=0.109 Sum_probs=87.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCc----ccccccchhHHHHHHHHHHh-----------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSE----LVQKFIGEGSRMVRELFVMA----------- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~----l~~~~~~~~~~~v~~~~~~a----------- 300 (378)
-+|.+.+|+.++|+||||||||||+++|+|.+.+. .|.++... +.+........++.+.+..+
T Consensus 26 vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 105 (556)
T PRK11819 26 ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRF 105 (556)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHH
Confidence 46789999999999999999999999999998765 55554321 11110000011111111100
Q ss_pred ------------------------------------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeE
Q psy6098 301 ------------------------------------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSI 336 (378)
Q Consensus 301 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~v 336 (378)
.+..+.+. .....+..||+|++|++.++++ ..|.|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~v 184 (556)
T PRK11819 106 NEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVTKLSGGERRRVALCRLLLEKPDM 184 (556)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchhhcCHHHHHHHHHHHHHhCCCCE
Confidence 01111121 2456778999999999999998 89999
Q ss_pred EEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 337 IFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 337 l~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
||||| |++++|+.....+.++|+++.
T Consensus 185 lLLDE----------Pt~~LD~~~~~~l~~~L~~~~ 210 (556)
T PRK11819 185 LLLDE----------PTNHLDAESVAWLEQFLHDYP 210 (556)
T ss_pred EEEcC----------CCCcCChHHHHHHHHHHHhCC
Confidence 99999 999999999999999999874
No 355
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=2.1e-13 Score=125.87 Aligned_cols=126 Identities=20% Similarity=0.241 Sum_probs=89.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
.++.+.+|+.++|.||||+|||||+++|+|.+.+ ..|.+++.++.. . |+.+. ..++.
T Consensus 26 isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 105 (259)
T PRK14260 26 ISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIY 105 (259)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCCccHH
Confidence 4678899999999999999999999999998762 367777654311 0 11000 01233
Q ss_pred HHHHHh------------------hhhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMA------------------SLKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+... .+..+.+ .......+..+|.|++|+++++++ ..|.+++|||
T Consensus 106 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE--------- 176 (259)
T PRK14260 106 ENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDE--------- 176 (259)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---------
Confidence 322211 0111111 122345567899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 177 -Pt~~LD~~~~~~l~~~l~~~~~ 198 (259)
T PRK14260 177 -PCSALDPIATMKVEELIHSLRS 198 (259)
T ss_pred -CCccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998753
No 356
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.44 E-value=2e-13 Score=129.55 Aligned_cols=117 Identities=17% Similarity=0.150 Sum_probs=84.1
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcCce-------EEEeccCcccccccchhHHHHHHHHHHhh------------
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-------FIRVSGSELVQKFIGEGSRMVRELFVMAS------------ 301 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-------~i~~~~~~l~~~~~~~~~~~v~~~~~~a~------------ 301 (378)
.+..++.+++.||||.||||+++.+||.++++ .|.....-+...|.+ +|.+.|..+.
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~g----tV~~~l~~~~~~~~~~s~~~~e 438 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDG----TVEDLLRSAIRSAFGSSYFKTE 438 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCC----cHHHHHHHhhhhhcccchhHHh
Confidence 46678899999999999999999999999876 222222223333333 3444443332
Q ss_pred -hhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhc
Q psy6098 302 -LKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 371 (378)
Q Consensus 302 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l 371 (378)
.+-+.+.......+..||+|+-|+++++.+ ...+|.+||| |++.+|.+.+-.+...+++.
T Consensus 439 i~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDE----------PSA~LDvEqR~~vakvIRR~ 501 (591)
T COG1245 439 IVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDE----------PSAYLDVEQRIIVAKVIRRF 501 (591)
T ss_pred hcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecC----------chhhccHHHHHHHHHHHHHH
Confidence 222334444555677899999999998887 7889999999 99999998887777777654
No 357
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=2.6e-13 Score=127.01 Aligned_cols=126 Identities=21% Similarity=0.284 Sum_probs=88.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC-------ceEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-------CTFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~-------~~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
-++.+.+|+.++|.||||+|||||+++|+|... ...|.+++.++.. . |+.+. ...+.
T Consensus 58 vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 137 (286)
T PRK14275 58 VNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIF 137 (286)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHH
Confidence 467889999999999999999999999999753 2267776644311 0 11110 01222
Q ss_pred HHHHHh------------------hhhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMA------------------SLKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+... .+..+.+ .......+..+|+|++|++.++++ ..|+||+|||
T Consensus 138 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDE--------- 208 (286)
T PRK14275 138 DNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDE--------- 208 (286)
T ss_pred HHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---------
Confidence 222211 0111111 123355678999999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 209 -Pt~gLD~~~~~~l~~~L~~~~~ 230 (286)
T PRK14275 209 -PTSALDPKATAKIEDLIQELRG 230 (286)
T ss_pred -CCccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998754
No 358
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=2.3e-13 Score=125.00 Aligned_cols=126 Identities=22% Similarity=0.249 Sum_probs=89.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
.++.+.+|+.++|.||||+|||||+++|+|...+ ..|.+++.++.. . |+.+. ..++.
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 102 (251)
T PRK14270 23 INLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIY 102 (251)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHH
Confidence 4678899999999999999999999999998753 377777655421 0 11110 01222
Q ss_pred HHHHHh------------------hhhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMA------------------SLKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+... .++.+.+ .......+..+|.|++|+++++++ ..|+|+++||
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE--------- 173 (251)
T PRK14270 103 DNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDE--------- 173 (251)
T ss_pred HHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---------
Confidence 222111 0111111 122345667899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 174 -P~~~LD~~~~~~l~~~L~~~~~ 195 (251)
T PRK14270 174 -PTSALDPISTLKIEDLMVELKK 195 (251)
T ss_pred -CcccCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999988753
No 359
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=2.5e-13 Score=124.72 Aligned_cols=125 Identities=22% Similarity=0.266 Sum_probs=88.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhc---C----ceEEEeccCcccc------------cccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---E----CTFIRVSGSELVQ------------KFIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~---~----~~~i~~~~~~l~~------------~~~~~~----~~~v~ 294 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.. . ...|.+++.++.. .|+.+. ..++.
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 101 (250)
T PRK14245 22 ISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIF 101 (250)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHH
Confidence 36789999999999999999999999999973 2 2367777654421 011110 01222
Q ss_pred HHHHHh------------------hhhhhhhc----cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMA------------------SLKKLAFA----HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a------------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+... .++.+.+. ......+..+|+|++|++.++++ ..|++++|||
T Consensus 102 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE--------- 172 (250)
T PRK14245 102 ENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDE--------- 172 (250)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---------
Confidence 222110 11112221 12345567899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcc
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
|++++|+..+..+.++|.++.
T Consensus 173 -Pt~~LD~~~~~~l~~~l~~~~ 193 (250)
T PRK14245 173 -PASALDPISTAKVEELIHELK 193 (250)
T ss_pred -CCccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999885
No 360
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.43 E-value=2.4e-13 Score=124.77 Aligned_cols=126 Identities=21% Similarity=0.250 Sum_probs=88.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC-------ceEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-------CTFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~-------~~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
.+|.+.+|+.++|.||||+|||||+++|+|... ...|.+++.++.. . |+.+. ...+.
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~ 101 (250)
T PRK14240 22 INLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIY 101 (250)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccHH
Confidence 467889999999999999999999999999865 2367777654321 0 11110 01233
Q ss_pred HHHHHhh------------------hhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMAS------------------LKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a~------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+.... +..+.+ .......+..+|.|++|+++++++ ..|++++|||
T Consensus 102 ~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE--------- 172 (250)
T PRK14240 102 DNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDE--------- 172 (250)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC---------
Confidence 3222110 001111 012234566899999999999999 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 173 -P~~~LD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14240 173 -PTSALDPISTLKIEELIQELKK 194 (250)
T ss_pred -CCccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998853
No 361
>PLN03211 ABC transporter G-25; Provisional
Probab=99.43 E-value=1.7e-13 Score=141.58 Aligned_cols=130 Identities=22% Similarity=0.240 Sum_probs=93.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc----eEEEeccCcccc------cccch-----hHHHHHHHHHHhh-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC----TFIRVSGSELVQ------KFIGE-----GSRMVRELFVMAS- 301 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~----~~i~~~~~~l~~------~~~~~-----~~~~v~~~~~~a~- 301 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+ ..|.++|.++.. .|+.+ ...++++.+..+.
T Consensus 87 vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~ 166 (659)
T PLN03211 87 VTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSL 166 (659)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHH
Confidence 3567899999999999999999999999999865 378888765421 12111 1123444443221
Q ss_pred -------------------hhhhhhccCc-----hhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCC
Q psy6098 302 -------------------LKKLAFAHHP-----LLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSG 355 (378)
Q Consensus 302 -------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~ 355 (378)
++.+++.... ......+|+|++||+.++++ .+|+|||||| |++|
T Consensus 167 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDE----------Ptsg 236 (659)
T PLN03211 167 LRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE----------PTSG 236 (659)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeC----------CCCC
Confidence 1112222211 22345799999999999998 8999999999 9999
Q ss_pred CChHHHHHHHHHHHhccCCCCC
Q psy6098 356 GDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 356 ~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
+|+..+..+.++|+++...+.|
T Consensus 237 LD~~~~~~l~~~L~~l~~~g~T 258 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQKGKT 258 (659)
T ss_pred cCHHHHHHHHHHHHHHHhCCCE
Confidence 9999999999999998755544
No 362
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.43 E-value=1.7e-13 Score=153.68 Aligned_cols=124 Identities=18% Similarity=0.163 Sum_probs=95.4
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc------c---ccch-----hHHHHHHHHHH---
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ------K---FIGE-----GSRMVRELFVM--- 299 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~------~---~~~~-----~~~~v~~~~~~--- 299 (378)
++.+.+|+.++|.||||+|||||+++|+|+..++ .|.++|.++.. + |+.+ ...++++.+..
T Consensus 950 sl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~ 1029 (2272)
T TIGR01257 950 NITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQ 1029 (2272)
T ss_pred EEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHH
Confidence 5678899999999999999999999999999876 77888765521 0 1111 01122222211
Q ss_pred --------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 300 --------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 300 --------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
..++.+++.......+..||+|++|+++++++ ..|.||+||| |++|+|+..++.
T Consensus 1030 lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDE----------PTSGLDp~sr~~ 1099 (2272)
T TIGR01257 1030 LKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDE----------PTSGVDPYSRRS 1099 (2272)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC----------CCcCCCHHHHHH
Confidence 11334455666677889999999999999998 8999999999 999999999999
Q ss_pred HHHHHHhcc
Q psy6098 364 MLELLNQLD 372 (378)
Q Consensus 364 ~~~lL~~l~ 372 (378)
++++|+++.
T Consensus 1100 l~~lL~~l~ 1108 (2272)
T TIGR01257 1100 IWDLLLKYR 1108 (2272)
T ss_pred HHHHHHHHh
Confidence 999999985
No 363
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.43 E-value=2.5e-13 Score=126.21 Aligned_cols=126 Identities=18% Similarity=0.191 Sum_probs=89.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC-----c--eEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-----C--TFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~-----~--~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+. + ..|.+++.++.. . |+.+. ..++.
T Consensus 43 vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 122 (271)
T PRK14238 43 INLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIY 122 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHH
Confidence 467889999999999999999999999999986 2 377777754421 0 11110 01233
Q ss_pred HHHHHhh------------------hhhh----hhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMAS------------------LKKL----AFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a~------------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+..+. +..+ .........+..+|.|++|++.++++ ..|+|++|||
T Consensus 123 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDE--------- 193 (271)
T PRK14238 123 DNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDE--------- 193 (271)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeC---------
Confidence 3322110 0000 01112334566799999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 194 -Pt~~LD~~~~~~l~~~l~~~~~ 215 (271)
T PRK14238 194 -PTSALDPISTLKVEELVQELKK 215 (271)
T ss_pred -CCCcCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999988754
No 364
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.43 E-value=2.4e-13 Score=138.64 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=89.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccC----ccccccc-chhHHHHHHHHHH-----------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGS----ELVQKFI-GEGSRMVRELFVM----------- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~----~l~~~~~-~~~~~~v~~~~~~----------- 299 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+... -+.+... .....++.+.+..
T Consensus 341 isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 420 (552)
T TIGR03719 341 LSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKRE 420 (552)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcch
Confidence 46778999999999999999999999999998765 5555321 0111100 0001122222211
Q ss_pred ----hhhhhhhhcc-CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 300 ----ASLKKLAFAH-HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 300 ----a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
..+..+.+.. .....+..+|+|++|+++++++ ..|.|||||| |++++|+..+..+.++|.++.
T Consensus 421 ~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDE----------Pt~~LD~~~~~~l~~~l~~~~ 490 (552)
T TIGR03719 421 VPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDE----------PTNDLDVETLRALEEALLEFA 490 (552)
T ss_pred HHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHCC
Confidence 1233334432 3456788999999999999998 8999999999 999999999999999999874
No 365
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=2.7e-13 Score=124.64 Aligned_cols=126 Identities=22% Similarity=0.257 Sum_probs=88.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc---------c---ccchh-----HHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ---------K---FIGEG-----SRMV 293 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~---------~---~~~~~-----~~~v 293 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+ ..|.+++.++.. . |+.+. ..++
T Consensus 23 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 102 (252)
T PRK14272 23 VNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSV 102 (252)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCH
Confidence 3677899999999999999999999999999753 367776654321 0 11110 0122
Q ss_pred HHHHHHhh------------------hhhhh----hccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCC
Q psy6098 294 RELFVMAS------------------LKKLA----FAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSR 349 (378)
Q Consensus 294 ~~~~~~a~------------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r 349 (378)
.+.+..+. +..+. ........+..+|+|++|+++++++ ..|.|++|||
T Consensus 103 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE-------- 174 (252)
T PRK14272 103 FDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDE-------- 174 (252)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC--------
Confidence 22222110 00111 0122345567899999999999998 8999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhccC
Q psy6098 350 IESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 350 ~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|+++..
T Consensus 175 --P~~~LD~~~~~~l~~~l~~~~~ 196 (252)
T PRK14272 175 --PTSALDPASTARIEDLMTDLKK 196 (252)
T ss_pred --CCccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998853
No 366
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.43 E-value=2.4e-13 Score=137.25 Aligned_cols=129 Identities=17% Similarity=0.185 Sum_probs=93.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-e--EEEeccCcccc-----------cccchhH--------HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-T--FIRVSGSELVQ-----------KFIGEGS--------RMVRE 295 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-~--~i~~~~~~l~~-----------~~~~~~~--------~~v~~ 295 (378)
-+|.+.+|+.++|.||||+|||||+|+|+|.+.+ . .|.+++.++.. .|+.+.. .++.+
T Consensus 279 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~ 358 (500)
T TIGR02633 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGK 358 (500)
T ss_pred ceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHH
Confidence 3677899999999999999999999999999874 2 67776643310 0111110 01111
Q ss_pred HHH----------------------Hhhhhhhhhcc-CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 296 LFV----------------------MASLKKLAFAH-HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 296 ~~~----------------------~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
.+. ...+..+.+.. .....+..||+|++|++.++++ ..|.||+|||
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDE--------- 429 (500)
T TIGR02633 359 NITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDE--------- 429 (500)
T ss_pred HhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcC---------
Confidence 110 01133334432 4567788999999999999998 7999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
|++++|+..++.+.++|.++...+.
T Consensus 430 -Pt~~LD~~~~~~l~~~l~~l~~~g~ 454 (500)
T TIGR02633 430 -PTRGVDVGAKYEIYKLINQLAQEGV 454 (500)
T ss_pred -CCCCcCHhHHHHHHHHHHHHHhCCC
Confidence 9999999999999999998865554
No 367
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.43 E-value=1.9e-13 Score=138.80 Aligned_cols=126 Identities=21% Similarity=0.255 Sum_probs=91.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc-----------c---ccchhH------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ-----------K---FIGEGS------ 290 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~-----------~---~~~~~~------ 290 (378)
-+|.+.+|+.++|.||||||||||+|+|+|.+.+ ..|.+++.++.. . |+.+..
T Consensus 28 isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~ 107 (529)
T PRK15134 28 VSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNP 107 (529)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCc
Confidence 4678899999999999999999999999999874 367776644310 0 111110
Q ss_pred -HHHHHHHHH------------------hhhhhhhhcc---CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCcccc
Q psy6098 291 -RMVRELFVM------------------ASLKKLAFAH---HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIG 346 (378)
Q Consensus 291 -~~v~~~~~~------------------a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~ 346 (378)
..+.+.+.. ..++.+.+.. .....+..||+|++|++++|++ ..|+||+|||
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDE----- 182 (529)
T PRK15134 108 LHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADE----- 182 (529)
T ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcC-----
Confidence 122221110 0122223322 1355678999999999999999 8999999999
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 347 SSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 347 ~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 183 -----Pt~~LD~~~~~~l~~~l~~l~~ 204 (529)
T PRK15134 183 -----PTTALDVSVQAQILQLLRELQQ 204 (529)
T ss_pred -----CCCccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998853
No 368
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=2.2e-13 Score=125.17 Aligned_cols=126 Identities=22% Similarity=0.248 Sum_probs=88.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC-------ceEEEeccCcccc---------c---ccchhH----HHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-------CTFIRVSGSELVQ---------K---FIGEGS----RMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~-------~~~i~~~~~~l~~---------~---~~~~~~----~~v~ 294 (378)
.++.+.+|+.++|.||||+|||||+++|+|... ...|.+++.++.. . |+.+.. ..+.
T Consensus 24 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 103 (252)
T PRK14255 24 IDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIY 103 (252)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCCcHH
Confidence 357889999999999999999999999999864 2367776654311 0 111110 1223
Q ss_pred HHHHHhh------------------hhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMAS------------------LKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a~------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+.... ++.+.+ .......+..+|.|++|+++++++ ..|.|++|||
T Consensus 104 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE--------- 174 (252)
T PRK14255 104 ENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDE--------- 174 (252)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC---------
Confidence 2222110 011111 112344566899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 175 -Pt~~LD~~~~~~l~~~l~~~~~ 196 (252)
T PRK14255 175 -PTSALDPISSTQIENMLLELRD 196 (252)
T ss_pred -CCccCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999988753
No 369
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.43 E-value=2.7e-13 Score=138.20 Aligned_cols=128 Identities=20% Similarity=0.255 Sum_probs=90.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccch-----------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGE----------------- 288 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~----------------- 288 (378)
-++.+++|+.+++.||||+|||||+++++|.+.+. .|.+++.++..- |+.+
T Consensus 337 ~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~ 416 (544)
T TIGR01842 337 ISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFG 416 (544)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccC
Confidence 45678899999999999999999999999999876 788887654210 1111
Q ss_pred ---hHHHHHHHHHHhhhhhhh------hccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 289 ---GSRMVRELFVMASLKKLA------FAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 289 ---~~~~v~~~~~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+...+.+..+.+.+..+. ...........+|+|++||++++|+ .+|+|++||| |++++|
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDE----------pts~LD 486 (544)
T TIGR01842 417 ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDE----------PNSNLD 486 (544)
T ss_pred CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeC----------CccccC
Confidence 111222222222222211 1112222345799999999999999 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccCCC
Q psy6098 358 SEVQRTMLELLNQLDGFE 375 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~~~ 375 (378)
+..+..+.+.|.++...+
T Consensus 487 ~~~~~~i~~~l~~~~~~~ 504 (544)
T TIGR01842 487 EEGEQALANAIKALKARG 504 (544)
T ss_pred HHHHHHHHHHHHHHhhCC
Confidence 999999999998874333
No 370
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=3e-13 Score=124.28 Aligned_cols=125 Identities=19% Similarity=0.258 Sum_probs=89.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+ ..|.+++.++.. . |+.+. ...+.
T Consensus 23 ~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 102 (251)
T PRK14249 23 INMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIF 102 (251)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcCcHH
Confidence 4678889999999999999999999999999875 367776654321 0 11110 01223
Q ss_pred HHHHHhh------------------hhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMAS------------------LKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a~------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+.... +..+.+ .......+..+|.|++|++.++++ ..|++++|||
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE--------- 173 (251)
T PRK14249 103 DNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDE--------- 173 (251)
T ss_pred HHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---------
Confidence 2222110 111111 122345566899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcc
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
|++++|+..+..+.++|.++.
T Consensus 174 -Pt~~LD~~~~~~l~~~l~~~~ 194 (251)
T PRK14249 174 -PCSALDPVSTMRIEELMQELK 194 (251)
T ss_pred -CCccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999884
No 371
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.43 E-value=3.1e-13 Score=125.60 Aligned_cols=126 Identities=20% Similarity=0.234 Sum_probs=89.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+ ..|.+++.++.. . |+.+. ..++.
T Consensus 44 vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 123 (272)
T PRK14236 44 ISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIY 123 (272)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHH
Confidence 4678999999999999999999999999999762 377777654421 0 11110 01333
Q ss_pred HHHHHhh------------------hhhhhhc----cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMAS------------------LKKLAFA----HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a~------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+.... +..+.+. ......+..+|.|++|+++++++ ..|+||+|||
T Consensus 124 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE--------- 194 (272)
T PRK14236 124 ENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDE--------- 194 (272)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeC---------
Confidence 3332110 0111110 12334567899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 195 -Pt~gLD~~~~~~l~~~L~~~~~ 216 (272)
T PRK14236 195 -PTSALDPISTLKIEELITELKS 216 (272)
T ss_pred -CcccCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999998753
No 372
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.42 E-value=3.1e-13 Score=139.12 Aligned_cols=124 Identities=17% Similarity=0.214 Sum_probs=92.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccc------------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIG------------------ 287 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~------------------ 287 (378)
-++.+++|+.++|.||+|+|||||++.|+|.+ ++ .|.+++.++.+- |+.
T Consensus 369 i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~ 447 (588)
T PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGN 447 (588)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCC
Confidence 35788999999999999999999999999999 65 888888655210 111
Q ss_pred --hhHHHHHHHHHHhhhhhhhhcc--Cchh----hhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 288 --EGSRMVRELFVMASLKKLAFAH--HPLL----FWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 288 --~~~~~v~~~~~~a~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
.+...+.++.+.+.+..+.... -... .-..+|+|++||+++||+ .+|+|++||| |++++|
T Consensus 448 ~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE----------~TSaLD 517 (588)
T PRK11174 448 PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDE----------PTASLD 517 (588)
T ss_pred CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC----------CccCCC
Confidence 1333455555555544432211 1111 223699999999999999 8999999999 999999
Q ss_pred hHHHHHHHHHHHhcc
Q psy6098 358 SEVQRTMLELLNQLD 372 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~ 372 (378)
+++.+.+.+.|.++.
T Consensus 518 ~~te~~i~~~l~~~~ 532 (588)
T PRK11174 518 AHSEQLVMQALNAAS 532 (588)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888764
No 373
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=2.3e-13 Score=138.17 Aligned_cols=123 Identities=17% Similarity=0.142 Sum_probs=85.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCc-c---cccccchhHHHHHHHHH-------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSE-L---VQKFIGEGSRMVRELFV------------- 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~-l---~~~~~~~~~~~v~~~~~------------- 298 (378)
-+|.+.+|+.++|+||||||||||+|+|+|.+.++ .|.+++.. + .+........++.+.+.
T Consensus 20 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 99 (530)
T PRK15064 20 ISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQER 99 (530)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHH
Confidence 46789999999999999999999999999998765 66665421 1 11100000000000000
Q ss_pred ------------------------------------HhhhhhhhhccCc-hhhhhHhhhhhhhhhccccc--CCCeEEEE
Q psy6098 299 ------------------------------------MASLKKLAFAHHP-LLFWSLLTILTNTIVCNFRE--HAPSIIFM 339 (378)
Q Consensus 299 ------------------------------------~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~p~vl~l 339 (378)
...+..+++.... ...+..||+|++|++.++++ ..|.||||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlL 179 (530)
T PRK15064 100 DRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLL 179 (530)
T ss_pred HHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0112223332222 24578999999999999998 89999999
Q ss_pred ecCccccCCCCCCCCCCChHHHHHHHHHHHh
Q psy6098 340 DEIDSIGSSRIESGSGGDSEVQRTMLELLNQ 370 (378)
Q Consensus 340 DEid~~~~~r~~~~~~~d~~~~~~~~~lL~~ 370 (378)
|| |++++|+..+..+.++|.+
T Consensus 180 DE----------Pt~~LD~~~~~~l~~~l~~ 200 (530)
T PRK15064 180 DE----------PTNNLDINTIRWLEDVLNE 200 (530)
T ss_pred cC----------CCcccCHHHHHHHHHHHHh
Confidence 99 9999999999999999875
No 374
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=4.3e-13 Score=123.39 Aligned_cols=126 Identities=21% Similarity=0.266 Sum_probs=88.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC-------ceEEEeccCccccc------------ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-------CTFIRVSGSELVQK------------FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~-------~~~i~~~~~~l~~~------------~~~~~----~~~v~ 294 (378)
.+|.+.+|+.++|.||||+|||||+++|+|..+ ...|.+++.++... |+.+. ..++.
T Consensus 25 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 104 (253)
T PRK14261 25 ITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIY 104 (253)
T ss_pred eEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccHH
Confidence 467899999999999999999999999999865 23677766543210 11110 01222
Q ss_pred HHHHHhh------------------hhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMAS------------------LKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a~------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+.... +..+.+ .......+..+|.|++|++.++++ ..|++++|||
T Consensus 105 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE--------- 175 (253)
T PRK14261 105 ENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDE--------- 175 (253)
T ss_pred HHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---------
Confidence 2222110 111111 112345667899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 176 -P~~gLD~~~~~~l~~~l~~~~~ 197 (253)
T PRK14261 176 -PCSALDPIATAKIEDLIEDLKK 197 (253)
T ss_pred -CcccCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999998754
No 375
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.42 E-value=6.2e-13 Score=129.44 Aligned_cols=137 Identities=26% Similarity=0.369 Sum_probs=89.7
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhhh--cCC-CCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccc-cccc
Q psy6098 212 MVGGLDNQIKEIKEVIELPVKHPELFDA--LGI-AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIG 287 (378)
Q Consensus 212 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~--~~~-~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~-~~~~ 287 (378)
.++|++++++.+..++..+++....... -.+ .+..+++|+||||||||++++++|..++.+++.+++..+.. .|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 3899999999998776543332211000 011 13457999999999999999999999999999999988753 5777
Q ss_pred hhHHHH-HHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHH
Q psy6098 288 EGSRMV-RELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLE 366 (378)
Q Consensus 288 ~~~~~v-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~ 366 (378)
+....+ ...+..+.. ......++||||||||++.+++.+|+.+-|.........
T Consensus 152 ~d~e~~l~~l~~~~~~-------------------------~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~ 206 (412)
T PRK05342 152 EDVENILLKLLQAADY-------------------------DVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQA 206 (412)
T ss_pred chHHHHHHHHHHhccc-------------------------cHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHH
Confidence 754433 333322200 002247899999999999988766665555543333344
Q ss_pred HHHhccC
Q psy6098 367 LLNQLDG 373 (378)
Q Consensus 367 lL~~l~~ 373 (378)
||+-|++
T Consensus 207 LL~~Leg 213 (412)
T PRK05342 207 LLKILEG 213 (412)
T ss_pred HHHHHhc
Confidence 4444443
No 376
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.42 E-value=8.4e-13 Score=112.58 Aligned_cols=124 Identities=18% Similarity=0.204 Sum_probs=96.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccch----------------hHHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGE----------------GSRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~----------------~~~~v~~~~~~ 299 (378)
.+..+++|....|+||||+|||||+.+++.+++.+ .|.+++.++.+- .+. +.-+|+++...
T Consensus 20 isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~-~s~~LAk~lSILkQ~N~i~~rlTV~dLv~F 98 (252)
T COG4604 20 VSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTST-PSKELAKKLSILKQENHINSRLTVRDLVGF 98 (252)
T ss_pred ceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccC-ChHHHHHHHHHHHhhchhhheeEHHHHhhc
Confidence 46678999999999999999999999999999887 889988877321 100 00012222111
Q ss_pred h-------------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 300 A-------------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 300 a-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
. .++.+.+.+........||+|++||.-+|.- ++.+.++||| |.+.+|-
T Consensus 99 GRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDE----------PLNNLDm 168 (252)
T COG4604 99 GRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDE----------PLNNLDM 168 (252)
T ss_pred CCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecC----------cccccch
Confidence 1 2556667788888999999999999877764 8999999999 9999999
Q ss_pred HHHHHHHHHHHhcc
Q psy6098 359 EVQRTMLELLNQLD 372 (378)
Q Consensus 359 ~~~~~~~~lL~~l~ 372 (378)
.....++++|+++.
T Consensus 169 kHsv~iMk~Lrrla 182 (252)
T COG4604 169 KHSVQIMKILRRLA 182 (252)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888999998875
No 377
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=3.8e-13 Score=123.46 Aligned_cols=126 Identities=21% Similarity=0.251 Sum_probs=88.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc--------c---ccchh----HHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ--------K---FIGEG----SRMVRE 295 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~--------~---~~~~~----~~~v~~ 295 (378)
.+|.+.+|+.++|.||||+|||||+++|+|...+ ..|.+++.++.. . |+.+. ..++.+
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 101 (249)
T PRK14253 22 INLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYE 101 (249)
T ss_pred ceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHH
Confidence 4678899999999999999999999999999874 367777654321 0 11110 012222
Q ss_pred HHHHhh------------------hhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCC
Q psy6098 296 LFVMAS------------------LKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIE 351 (378)
Q Consensus 296 ~~~~a~------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~ 351 (378)
.+..+. +..+.+ .......+..+|.|++|++.++++ ..|+|+++||
T Consensus 102 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE---------- 171 (249)
T PRK14253 102 NVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDE---------- 171 (249)
T ss_pred HHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeC----------
Confidence 222110 001111 112234556899999999999998 8999999999
Q ss_pred CCCCCChHHHHHHHHHHHhccC
Q psy6098 352 SGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 352 ~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 172 P~~~LD~~~~~~l~~~l~~~~~ 193 (249)
T PRK14253 172 PTSALDPIATHKIEELMEELKK 193 (249)
T ss_pred CCccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998854
No 378
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.42 E-value=2.5e-13 Score=137.71 Aligned_cols=125 Identities=20% Similarity=0.208 Sum_probs=90.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEec-cCc---c-----------cc--cccchh-----HHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVS-GSE---L-----------VQ--KFIGEG-----SRMV 293 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~-~~~---l-----------~~--~~~~~~-----~~~v 293 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.++ +.. + .. .|+.+. ..++
T Consensus 303 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 382 (520)
T TIGR03269 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTV 382 (520)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcH
Confidence 45778999999999999999999999999998765 67664 321 0 00 011111 1123
Q ss_pred HHHHHH----------------hhhhhhhhcc-----CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 294 RELFVM----------------ASLKKLAFAH-----HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 294 ~~~~~~----------------a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
.+.+.. ..+..+.+.. .....+..||+|++|+++++++ .+|.||+|||
T Consensus 383 ~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDE--------- 453 (520)
T TIGR03269 383 LDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDE--------- 453 (520)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC---------
Confidence 332221 0122233332 2456788999999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcc
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
|++++|+..++.+.++|.++.
T Consensus 454 -Pt~~LD~~~~~~l~~~l~~l~ 474 (520)
T TIGR03269 454 -PTGTMDPITKVDVTHSILKAR 474 (520)
T ss_pred -CcccCCHHHHHHHHHHHHHHH
Confidence 999999999999999998874
No 379
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.42 E-value=2.5e-13 Score=136.71 Aligned_cols=129 Identities=14% Similarity=0.113 Sum_probs=93.5
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc-----------ccchh-----------H--HH
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK-----------FIGEG-----------S--RM 292 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~-----------~~~~~-----------~--~~ 292 (378)
++.+.+|+.++|.||||||||||+++|+|...+. .|.+++.++... |+.+. . ..
T Consensus 268 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~ 347 (491)
T PRK10982 268 SFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNS 347 (491)
T ss_pred eEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHhe
Confidence 5779999999999999999999999999998765 677766443110 11110 0 00
Q ss_pred HHHHHH------------------Hhhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCC
Q psy6098 293 VRELFV------------------MASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIE 351 (378)
Q Consensus 293 v~~~~~------------------~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~ 351 (378)
+.+.+. ...+..+.+. ......+..||+|++|++.++++ ..|.||||||
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDE---------- 417 (491)
T PRK10982 348 LISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDE---------- 417 (491)
T ss_pred ehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcC----------
Confidence 111110 0112223332 34577888999999999999998 8999999999
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 352 SGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 352 ~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
|++++|+..+..+.++|.++...+.|
T Consensus 418 Pt~gLD~~~~~~~~~~l~~l~~~~~t 443 (491)
T PRK10982 418 PTRGIDVGAKFEIYQLIAELAKKDKG 443 (491)
T ss_pred CCcccChhHHHHHHHHHHHHHHCCCE
Confidence 99999999999999999888665543
No 380
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.42 E-value=1.8e-13 Score=139.01 Aligned_cols=126 Identities=19% Similarity=0.220 Sum_probs=91.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce-EEEeccCcccc-------------cccchhH-------HHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-FIRVSGSELVQ-------------KFIGEGS-------RMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-~i~~~~~~l~~-------------~~~~~~~-------~~v~~~ 296 (378)
-+|.+.+|+.++|.||||||||||+|+|+|.+... .|.+++.++.. .|+.+.. .++.+.
T Consensus 305 isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~ 384 (529)
T PRK15134 305 ISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQI 384 (529)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHH
Confidence 46788999999999999999999999999998522 67777643310 1111111 123333
Q ss_pred HHHh-------------------hhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCC
Q psy6098 297 FVMA-------------------SLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGS 354 (378)
Q Consensus 297 ~~~a-------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~ 354 (378)
+... .+..+.+. ......+..||+|++|++.++++ ..|.||+||| |++
T Consensus 385 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE----------Pt~ 454 (529)
T PRK15134 385 IEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDE----------PTS 454 (529)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeC----------Ccc
Confidence 3211 12222232 23455677999999999999998 8999999999 999
Q ss_pred CCChHHHHHHHHHHHhccC
Q psy6098 355 GGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 355 ~~d~~~~~~~~~lL~~l~~ 373 (378)
++|+..++.+.++|.++..
T Consensus 455 ~LD~~~~~~l~~~l~~~~~ 473 (529)
T PRK15134 455 SLDKTVQAQILALLKSLQQ 473 (529)
T ss_pred ccCHHHHHHHHHHHHHHHH
Confidence 9999999999999998853
No 381
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=3.7e-13 Score=125.29 Aligned_cols=126 Identities=17% Similarity=0.251 Sum_probs=89.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc--------c---ccchh----HHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ--------K---FIGEG----SRMVRE 295 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~--------~---~~~~~----~~~v~~ 295 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.+ ..|.+++..+.. . |+.+. ..++.+
T Consensus 40 vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~e 119 (276)
T PRK14271 40 VSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMD 119 (276)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHHH
Confidence 4678899999999999999999999999999874 277777654321 0 11110 012333
Q ss_pred HHHHhh------------------hhhhhhcc----CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCC
Q psy6098 296 LFVMAS------------------LKKLAFAH----HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIE 351 (378)
Q Consensus 296 ~~~~a~------------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~ 351 (378)
.+.... +..+.+.. .....+..+|.|++|+++++++ ..|.||+|||
T Consensus 120 ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDE---------- 189 (276)
T PRK14271 120 NVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDE---------- 189 (276)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC----------
Confidence 222110 11111111 1234467899999999999999 8999999999
Q ss_pred CCCCCChHHHHHHHHHHHhccC
Q psy6098 352 SGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 352 ~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..++.+.++|.++..
T Consensus 190 Pt~~LD~~~~~~l~~~L~~~~~ 211 (276)
T PRK14271 190 PTSALDPTTTEKIEEFIRSLAD 211 (276)
T ss_pred CcccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998754
No 382
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.41 E-value=4.4e-13 Score=134.97 Aligned_cols=128 Identities=15% Similarity=0.180 Sum_probs=92.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc---eEEEeccCcccc-----------cccchhH-------HHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC---TFIRVSGSELVQ-----------KFIGEGS-------RMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~---~~i~~~~~~l~~-----------~~~~~~~-------~~v~~~ 296 (378)
-+|.+.+|+.++|.||||+|||||+|+|+|...+ ..|.+++..+.. .|+.+.. ..+.++
T Consensus 279 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~ 358 (490)
T PRK10938 279 LSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNV 358 (490)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHH
Confidence 4677889999999999999999999999998653 367776643210 0111110 011221
Q ss_pred HH---------------------Hhhhhhhhhcc-CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCC
Q psy6098 297 FV---------------------MASLKKLAFAH-HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIES 352 (378)
Q Consensus 297 ~~---------------------~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~ 352 (378)
+. ...++.+.+.. .....+..||+|++|++.++++ ..|.||+||| |
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE----------P 428 (490)
T PRK10938 359 ILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDE----------P 428 (490)
T ss_pred HHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------c
Confidence 11 01122334444 5567788999999999999998 8999999999 9
Q ss_pred CCCCChHHHHHHHHHHHhccCCC
Q psy6098 353 GSGGDSEVQRTMLELLNQLDGFE 375 (378)
Q Consensus 353 ~~~~d~~~~~~~~~lL~~l~~~~ 375 (378)
++++|+..++.+.++|.++...+
T Consensus 429 t~gLD~~~~~~l~~~L~~l~~~~ 451 (490)
T PRK10938 429 LQGLDPLNRQLVRRFVDVLISEG 451 (490)
T ss_pred cccCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999986443
No 383
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.41 E-value=3.8e-13 Score=129.34 Aligned_cols=130 Identities=22% Similarity=0.218 Sum_probs=96.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------cccchhH------------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------KFIGEGS------------------ 290 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~~~~~~~------------------ 290 (378)
.+|.+.+|+.++++||+|+|||||+|+|.|.+.+. .|++++.++.+ +++|.-+
T Consensus 355 isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~ 434 (580)
T COG4618 355 ISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFG 434 (580)
T ss_pred ceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhcc
Confidence 57889999999999999999999999999999987 89999988832 1222111
Q ss_pred -----HHHHHHHHHhhhhhhhhc------cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 291 -----RMVRELFVMASLKKLAFA------HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 291 -----~~v~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
..|.+.-..|...++... ..-...=..||+|++||+..+|+ ..|.+++||| |.+++|
T Consensus 435 ~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDE----------PNsNLD 504 (580)
T COG4618 435 EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDE----------PNSNLD 504 (580)
T ss_pred ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecC----------CCCCcc
Confidence 122222223333333222 11111223699999999999999 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccCCCCC
Q psy6098 358 SEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~~~~~ 377 (378)
.+....+.+-|.+++..|.|
T Consensus 505 ~~GE~AL~~Ai~~~k~rG~~ 524 (580)
T COG4618 505 SEGEAALAAAILAAKARGGT 524 (580)
T ss_pred hhHHHHHHHHHHHHHHcCCE
Confidence 99999999999888877654
No 384
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.41 E-value=4.4e-13 Score=140.88 Aligned_cols=122 Identities=20% Similarity=0.143 Sum_probs=91.0
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccc-------------------
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIG------------------- 287 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~------------------- 287 (378)
++.+++|+.++++||+|+|||||+++|+|.+.+. .|.+++.++.+- |+.
T Consensus 499 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~ 578 (710)
T TIGR03796 499 SLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP 578 (710)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCC
Confidence 5678899999999999999999999999999887 899988765210 111
Q ss_pred -hhHHHHHHHHHHhhhhhhhhc------cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 288 -EGSRMVRELFVMASLKKLAFA------HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 288 -~~~~~v~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
.+...+.++.+.+.+..+... ......-..+|+|++||+++||+ .+|+|++||| |++++|+
T Consensus 579 ~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDE----------ptS~LD~ 648 (710)
T TIGR03796 579 TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDE----------ATSALDP 648 (710)
T ss_pred CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEEC----------ccccCCH
Confidence 122334444444443332211 11112234699999999999999 9999999999 9999999
Q ss_pred HHHHHHHHHHHh
Q psy6098 359 EVQRTMLELLNQ 370 (378)
Q Consensus 359 ~~~~~~~~lL~~ 370 (378)
.....+.+.|.+
T Consensus 649 ~te~~i~~~l~~ 660 (710)
T TIGR03796 649 ETEKIIDDNLRR 660 (710)
T ss_pred HHHHHHHHHHHh
Confidence 999999988876
No 385
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.41 E-value=4.6e-13 Score=137.25 Aligned_cols=125 Identities=22% Similarity=0.243 Sum_probs=91.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccc------------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIG------------------ 287 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~------------------ 287 (378)
-++.+++|+.++|.||||+|||||++.|+|.+.++ .|.+++.++.+- |+.
T Consensus 359 i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~ 438 (574)
T PRK11160 359 LSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAA 438 (574)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCC
Confidence 35678899999999999999999999999999876 888888665210 111
Q ss_pred --hhHHHHHHHHHHhhhhhhhhccC-----chhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 288 --EGSRMVRELFVMASLKKLAFAHH-----PLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 288 --~~~~~v~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
.+...+.+.++.+.+..+...+. ....-..+|+|++||++++|+ .+|+|++||| |++++|+
T Consensus 439 ~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE----------~ts~lD~ 508 (574)
T PRK11160 439 PNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDE----------PTEGLDA 508 (574)
T ss_pred CccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC----------CcccCCH
Confidence 12223333444433333221111 111234699999999999999 8999999999 9999999
Q ss_pred HHHHHHHHHHHhcc
Q psy6098 359 EVQRTMLELLNQLD 372 (378)
Q Consensus 359 ~~~~~~~~lL~~l~ 372 (378)
.....+.+.|.++.
T Consensus 509 ~t~~~i~~~l~~~~ 522 (574)
T PRK11160 509 ETERQILELLAEHA 522 (574)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998774
No 386
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=4.6e-13 Score=127.42 Aligned_cols=126 Identities=21% Similarity=0.218 Sum_probs=90.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC-------ceEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-------CTFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~-------~~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
-+|.+.+|+.++|+||||||||||+++|+|... ...|.++|.++.. . |+.+. ..+++
T Consensus 101 is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~ 180 (329)
T PRK14257 101 LNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIF 180 (329)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHH
Confidence 467899999999999999999999999999975 2377777765421 0 11110 11233
Q ss_pred HHHHHhh------------------hhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMAS------------------LKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a~------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+.... ++...+ ..........+|+|++|+++++|+ ..|.||+|||
T Consensus 181 eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDE--------- 251 (329)
T PRK14257 181 DNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDE--------- 251 (329)
T ss_pred HHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeC---------
Confidence 3332110 111111 112345667899999999999999 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+.+...+.++|.++..
T Consensus 252 -Pts~LD~~~~~~i~~~i~~l~~ 273 (329)
T PRK14257 252 -PTSALDPIATAKIEELILELKK 273 (329)
T ss_pred -CcccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999988754
No 387
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.41 E-value=3.2e-13 Score=139.76 Aligned_cols=123 Identities=19% Similarity=0.266 Sum_probs=88.3
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccch------hHHHHHHHHHHh----------
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGE------GSRMVRELFVMA---------- 300 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~------~~~~v~~~~~~a---------- 300 (378)
+|.+.+|+.++|.||||+|||||+++|+|.+.++ .|.+ +..+.-.|+.+ ...++.+.+...
T Consensus 339 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~ 417 (635)
T PRK11147 339 SAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRP 417 (635)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchH
Confidence 5778899999999999999999999999998765 5555 32221111111 011233322211
Q ss_pred -----hhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 301 -----SLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 301 -----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
.+..+.+. ......+..||+|++|++.+++. ..|.|||||| |++++|+.....+.++|.++.
T Consensus 418 ~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDE----------Pt~~LD~~~~~~l~~~l~~~~ 487 (635)
T PRK11147 418 RHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDE----------PTNDLDVETLELLEELLDSYQ 487 (635)
T ss_pred HHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------CCCCCCHHHHHHHHHHHHhCC
Confidence 11222232 23456778999999999999998 8999999999 999999999999999998874
No 388
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=2.9e-13 Score=137.50 Aligned_cols=125 Identities=18% Similarity=0.167 Sum_probs=90.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCc----cccccc--chhHHHHHHHHHH----------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSE----LVQKFI--GEGSRMVRELFVM---------- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~----l~~~~~--~~~~~~v~~~~~~---------- 299 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.++ .|.+++.. +.+... ......+.+.+..
T Consensus 338 is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 417 (530)
T PRK15064 338 LNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQA 417 (530)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHH
Confidence 36788999999999999999999999999998765 66665421 111100 0000112222211
Q ss_pred --hhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 300 --ASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 300 --a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
..+..+.+. ......+..+|+|++|+++++++ ..|.||+||| |++++|+..+..+.++|.++.
T Consensus 418 ~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE----------Pt~~LD~~~~~~l~~~l~~~~ 485 (530)
T PRK15064 418 VRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE----------PTNHMDMESIESLNMALEKYE 485 (530)
T ss_pred HHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcC----------CCCCCCHHHHHHHHHHHHHCC
Confidence 112233332 34566788999999999999998 8999999999 999999999999999998873
No 389
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.41 E-value=4.1e-13 Score=137.02 Aligned_cols=125 Identities=17% Similarity=0.174 Sum_probs=89.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccC----cccccc-cchhHHHHHHHHHH-----------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGS----ELVQKF-IGEGSRMVRELFVM----------- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~----~l~~~~-~~~~~~~v~~~~~~----------- 299 (378)
-+|.+.+|+.++|.||||+|||||+++|+|.+.+. .|.+.+. -+.+.. .-....++.+.+..
T Consensus 343 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 422 (556)
T PRK11819 343 LSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNRE 422 (556)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccH
Confidence 35778999999999999999999999999998765 5555321 011110 00000122222211
Q ss_pred ----hhhhhhhhcc-CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 300 ----ASLKKLAFAH-HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 300 ----a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
..+..+.+.. .....+..||+|++|++.++++ ..|.||+||| |++++|+..+..+.++|.++.
T Consensus 423 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE----------Pt~~LD~~~~~~l~~~l~~~~ 492 (556)
T PRK11819 423 IPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDE----------PTNDLDVETLRALEEALLEFP 492 (556)
T ss_pred HHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------CCCCCCHHHHHHHHHHHHhCC
Confidence 1233333432 3456788999999999999998 8999999999 999999999999999999874
No 390
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.40 E-value=4.8e-13 Score=140.52 Aligned_cols=125 Identities=18% Similarity=0.163 Sum_probs=91.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccch-----------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGE----------------- 288 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~----------------- 288 (378)
-++.+++|+.++|.||+|+|||||++.|+|.+.++ .|.+++.++.+- |+.+
T Consensus 493 isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~ 572 (708)
T TIGR01193 493 ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGA 572 (708)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccC
Confidence 35678899999999999999999999999999887 899988765210 1111
Q ss_pred ----hHHHHHHHHHHhhhhhhhhc------cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCC
Q psy6098 289 ----GSRMVRELFVMASLKKLAFA------HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGG 356 (378)
Q Consensus 289 ----~~~~v~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~ 356 (378)
+...+.++.+.+.+..+... ......-..+|+|++||+++||+ .+|+|++||| ||+++
T Consensus 573 ~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE----------~Ts~L 642 (708)
T TIGR01193 573 KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDE----------STSNL 642 (708)
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC----------ccccC
Confidence 12233334443333322111 11112234699999999999999 8999999999 99999
Q ss_pred ChHHHHHHHHHHHhcc
Q psy6098 357 DSEVQRTMLELLNQLD 372 (378)
Q Consensus 357 d~~~~~~~~~lL~~l~ 372 (378)
|+.....+.+.|..+.
T Consensus 643 D~~te~~i~~~L~~~~ 658 (708)
T TIGR01193 643 DTITEKKIVNNLLNLQ 658 (708)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999988763
No 391
>KOG0058|consensus
Probab=99.40 E-value=5.5e-13 Score=133.54 Aligned_cols=123 Identities=22% Similarity=0.274 Sum_probs=92.4
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccch------------------
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGE------------------ 288 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~------------------ 288 (378)
+|.++||+.++|.||+|+||||+++.|-.++.|. .|.++|.++.+- ++++
T Consensus 488 sfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~ 567 (716)
T KOG0058|consen 488 SFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD 567 (716)
T ss_pred eeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC
Confidence 5679999999999999999999999999999987 899999877321 1111
Q ss_pred --hHHHHHHHHHHhhhhhhhhc--cCchhhh----hHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 289 --GSRMVRELFVMASLKKLAFA--HHPLLFW----SLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 289 --~~~~v~~~~~~a~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
+...+...-++|....+..+ ...++.+ ..+|+|++||+++||+ .+|+||+||| .||++|.
T Consensus 568 ~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDE----------ATSALDa 637 (716)
T KOG0058|consen 568 NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDE----------ATSALDA 637 (716)
T ss_pred CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEec----------hhhhcch
Confidence 22334445555544433222 1112222 2699999999999999 9999999999 8899999
Q ss_pred HHHHHHHHHHHhc
Q psy6098 359 EVQRTMLELLNQL 371 (378)
Q Consensus 359 ~~~~~~~~lL~~l 371 (378)
+....+-+.|.++
T Consensus 638 eSE~lVq~aL~~~ 650 (716)
T KOG0058|consen 638 ESEYLVQEALDRL 650 (716)
T ss_pred hhHHHHHHHHHHh
Confidence 9998888888543
No 392
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.40 E-value=2.4e-13 Score=140.33 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=90.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcc---------------------cc---cccchh--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL---------------------VQ---KFIGEG-- 289 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l---------------------~~---~~~~~~-- 289 (378)
-+|.+.+|+.++|+||||||||||+++|+|.+.+. .|.+++..+ .. .|+.+.
T Consensus 35 is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~ 114 (623)
T PRK10261 35 LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPM 114 (623)
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCch
Confidence 46788999999999999999999999999998764 555544211 00 011111
Q ss_pred -----HHHHHHHHHHh------------------hhhhhhhcc---CchhhhhHhhhhhhhhhccccc--CCCeEEEEec
Q psy6098 290 -----SRMVRELFVMA------------------SLKKLAFAH---HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDE 341 (378)
Q Consensus 290 -----~~~v~~~~~~a------------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDE 341 (378)
..++.+.+... .++.+.+.. .....+..||+|++|+++++++ ..|.|||+||
T Consensus 115 ~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDE 194 (623)
T PRK10261 115 TSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADE 194 (623)
T ss_pred hhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 01222222110 122233321 2455678999999999999999 8999999999
Q ss_pred CccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 342 IDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 342 id~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 195 ----------Pt~~LD~~~~~~l~~ll~~l~~ 216 (623)
T PRK10261 195 ----------PTTALDVTIQAQILQLIKVLQK 216 (623)
T ss_pred ----------CCCccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999853
No 393
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.40 E-value=4.2e-13 Score=115.96 Aligned_cols=124 Identities=23% Similarity=0.320 Sum_probs=95.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccchhHH-----------------HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGEGSR-----------------MVRELFV 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~~~~-----------------~v~~~~~ 298 (378)
-++.+..++.+.++|.||+|||||+++|||.+.++ .|.+++.++.......... ++.|++.
T Consensus 25 ~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~ 104 (263)
T COG1101 25 LSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLA 104 (263)
T ss_pred CceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHH
Confidence 36688899999999999999999999999999987 8999998884432222111 3444433
Q ss_pred Hhh-----------------------hhh--hhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCC
Q psy6098 299 MAS-----------------------LKK--LAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIE 351 (378)
Q Consensus 299 ~a~-----------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~ 351 (378)
.|. +.. +++++....++..+|+|++|.+..+.+ ++|.|+||||
T Consensus 105 la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE---------- 174 (263)
T COG1101 105 LAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE---------- 174 (263)
T ss_pred HHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc----------
Confidence 332 111 235677888889999999999987776 9999999999
Q ss_pred CCCCCChHHHHHHHHHHHhc
Q psy6098 352 SGSGGDSEVQRTMLELLNQL 371 (378)
Q Consensus 352 ~~~~~d~~~~~~~~~lL~~l 371 (378)
.++++||.....++++=.++
T Consensus 175 HTAALDPkta~~vm~lT~ki 194 (263)
T COG1101 175 HTAALDPKTAEFVMELTAKI 194 (263)
T ss_pred hhhcCCcchHHHHHHHHHHH
Confidence 99999999888888765443
No 394
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=5.4e-13 Score=123.26 Aligned_cols=125 Identities=19% Similarity=0.237 Sum_probs=88.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
-+|.+.+|+.++|.||||+|||||+++|+|...+ ..|.+++.++.. . |+.+. ..++.
T Consensus 26 is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~~tv~ 105 (261)
T PRK14258 26 VSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVY 105 (261)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCcccHH
Confidence 4678999999999999999999999999999875 256666544310 0 00110 12333
Q ss_pred HHHHHh------------------hhhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMA------------------SLKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+... .+..+.+ .......+..+|.|++|+++++++ ..|.|++|||
T Consensus 106 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDE--------- 176 (261)
T PRK14258 106 DNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDE--------- 176 (261)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC---------
Confidence 322211 0111111 112344566899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcc
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
|++++|+..+..+.++|.++.
T Consensus 177 -P~~~LD~~~~~~l~~~l~~l~ 197 (261)
T PRK14258 177 -PCFGLDPIASMKVESLIQSLR 197 (261)
T ss_pred -CCccCCHHHHHHHHHHHHHHH
Confidence 999999999999999999874
No 395
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.40 E-value=4.9e-13 Score=137.71 Aligned_cols=125 Identities=22% Similarity=0.234 Sum_probs=91.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccch-----------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGE----------------- 288 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~----------------- 288 (378)
-++.+++|+.+++.|++|||||||++.|+|.+.+. .|.+++.++.+- |+.+
T Consensus 360 i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~ 439 (592)
T PRK10790 360 INLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR 439 (592)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC
Confidence 35678899999999999999999999999999986 899998766321 1111
Q ss_pred --hHHHHHHHHHHhhhhhhhhc------cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 289 --GSRMVRELFVMASLKKLAFA------HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 289 --~~~~v~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
+...+.++.+.+.+..+... ..-...-..+|+|++||++++|+ .+|+|++||| |++++|+
T Consensus 440 ~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDE----------pts~LD~ 509 (592)
T PRK10790 440 DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDE----------ATANIDS 509 (592)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeC----------CcccCCH
Confidence 11223333333333322211 11111223699999999999999 8999999999 9999999
Q ss_pred HHHHHHHHHHHhcc
Q psy6098 359 EVQRTMLELLNQLD 372 (378)
Q Consensus 359 ~~~~~~~~lL~~l~ 372 (378)
...+.+.+.|.++.
T Consensus 510 ~t~~~i~~~l~~~~ 523 (592)
T PRK10790 510 GTEQAIQQALAAVR 523 (592)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 396
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.40 E-value=5.1e-13 Score=111.22 Aligned_cols=129 Identities=23% Similarity=0.229 Sum_probs=87.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEe--ccCc--ccc-----------c---ccchhHHH-----
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRV--SGSE--LVQ-----------K---FIGEGSRM----- 292 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~--~~~~--l~~-----------~---~~~~~~~~----- 292 (378)
-+|+++.|++++|.||+|+||||++|++-+-+.++ .|.+ .+.- +.. . |+.+--+.
T Consensus 30 vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~ 109 (235)
T COG4778 30 VSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVS 109 (235)
T ss_pred eeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcc
Confidence 57889999999999999999999999998887776 4444 2221 110 0 11111110
Q ss_pred ----HHH-------------HHHHhhhhhhhh-ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCC
Q psy6098 293 ----VRE-------------LFVMASLKKLAF-AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIES 352 (378)
Q Consensus 293 ----v~~-------------~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~ 352 (378)
+.+ .-....+.++.+ +......+..+|+|++|++.++|. .+..||+||| |
T Consensus 110 aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDE----------P 179 (235)
T COG4778 110 ALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDE----------P 179 (235)
T ss_pred hHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecC----------C
Confidence 000 000001222222 223344556899999999999998 6778999999 9
Q ss_pred CCCCChHHHHHHHHHHHhccCCCC
Q psy6098 353 GSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 353 ~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
++++|...+..+.+++.+-+..|.
T Consensus 180 TasLDa~Nr~vVveli~e~Ka~Ga 203 (235)
T COG4778 180 TASLDATNRAVVVELIREAKARGA 203 (235)
T ss_pred cccccccchHHHHHHHHHHHhcCc
Confidence 999999999999999998766553
No 397
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=5e-13 Score=123.19 Aligned_cols=126 Identities=21% Similarity=0.232 Sum_probs=86.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEecc------Ccccc-------c---ccch-----hHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSG------SELVQ-------K---FIGE-----GSRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~------~~l~~-------~---~~~~-----~~~~v~ 294 (378)
-+|.+.+|+.++|.||||+|||||+++|+|...++ .|.++| .++.. . |+.+ ...++.
T Consensus 29 vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 108 (257)
T PRK14246 29 ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIY 108 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHH
Confidence 45778899999999999999999999999998754 333333 22210 0 1100 001122
Q ss_pred HHHHHh------------------hhhhhhhc----cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMA------------------SLKKLAFA----HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a------------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+... .++.+.+. ......+..+|.|++|++.++++ ..|.++++||
T Consensus 109 ~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDE--------- 179 (257)
T PRK14246 109 DNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDE--------- 179 (257)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC---------
Confidence 211110 01111221 12234667899999999999999 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|...+..+.++|.++..
T Consensus 180 -Pt~~LD~~~~~~l~~~l~~~~~ 201 (257)
T PRK14246 180 -PTSMIDIVNSQAIEKLITELKN 201 (257)
T ss_pred -CCccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998853
No 398
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=7.8e-13 Score=128.17 Aligned_cols=123 Identities=24% Similarity=0.293 Sum_probs=91.5
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccc-------------------
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIG------------------- 287 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~------------------- 287 (378)
++.+.+|+.+++.|++||||||+++.++|.+.++ .|.+++.++..- ++.
T Consensus 358 ~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~ 437 (573)
T COG4987 358 NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANP 437 (573)
T ss_pred ceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC
Confidence 4568899999999999999999999999999987 888888655211 011
Q ss_pred -hhHHHHHHHHHHhhhhhhhhcc-Cchhhh-----hHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 288 -EGSRMVRELFVMASLKKLAFAH-HPLLFW-----SLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 288 -~~~~~v~~~~~~a~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
.+...+.++++++.+.++.... +...-| ..+|+|++||+.++|. ++.++++||| ||.|+|+
T Consensus 438 ~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDE----------PTegLD~ 507 (573)
T COG4987 438 DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDE----------PTEGLDP 507 (573)
T ss_pred CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecC----------CcccCCh
Confidence 1222344555555555544332 222222 2699999999999998 7777999999 9999999
Q ss_pred HHHHHHHHHHHhc
Q psy6098 359 EVQRTMLELLNQL 371 (378)
Q Consensus 359 ~~~~~~~~lL~~l 371 (378)
.+.+.++++|.+.
T Consensus 508 ~TE~~vL~ll~~~ 520 (573)
T COG4987 508 ITERQVLALLFEH 520 (573)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999887653
No 399
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=5e-13 Score=126.20 Aligned_cols=126 Identities=21% Similarity=0.296 Sum_probs=89.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC-------ceEEEeccCcccc---------c---ccchhH----HHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-------CTFIRVSGSELVQ---------K---FIGEGS----RMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~-------~~~i~~~~~~l~~---------~---~~~~~~----~~v~ 294 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+. ...|.+++.++.. . |+.+.. ..+.
T Consensus 64 is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 143 (305)
T PRK14264 64 VSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIR 143 (305)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHH
Confidence 467899999999999999999999999999975 2377777654321 0 111110 1233
Q ss_pred HHHHHhh------------------------------hhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEE
Q psy6098 295 ELFVMAS------------------------------LKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIF 338 (378)
Q Consensus 295 ~~~~~a~------------------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~ 338 (378)
+.+.... ++.+.+ .......+..+|.|++|+++++++ ..|.|||
T Consensus 144 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLL 223 (305)
T PRK14264 144 ENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVIL 223 (305)
T ss_pred HHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3222110 011111 112234566899999999999998 8999999
Q ss_pred EecCccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 339 MDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 339 lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
||| |++++|+..+..+.++|.++..
T Consensus 224 LDE----------PtsgLD~~~~~~l~~~L~~~~~ 248 (305)
T PRK14264 224 MDE----------PASALDPIATSKIEDLIEELAE 248 (305)
T ss_pred EeC----------CcccCCHHHHHHHHHHHHHHhc
Confidence 999 9999999999999999998754
No 400
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.39 E-value=8.1e-13 Score=129.21 Aligned_cols=129 Identities=18% Similarity=0.237 Sum_probs=98.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc-----------------------------cc
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK-----------------------------FI 286 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~-----------------------------~~ 286 (378)
-+|.+.+|+..+|.|.||+|||||+|.|+|.+.++ .|.++|....-. |.
T Consensus 27 v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifL 106 (500)
T COG1129 27 VSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFL 106 (500)
T ss_pred ceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhc
Confidence 46788999999999999999999999999999987 888887654111 11
Q ss_pred chhHHH------HHHHHHHh--hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCC
Q psy6098 287 GEGSRM------VRELFVMA--SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGG 356 (378)
Q Consensus 287 ~~~~~~------v~~~~~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~ 356 (378)
|.-... -+++...| .+.++.....+...+..||.+++|+++++|+ .++.||+||| ||+++
T Consensus 107 gre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDE----------PTaaL 176 (500)
T COG1129 107 GREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDE----------PTAAL 176 (500)
T ss_pred ccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------CcccC
Confidence 100000 01111111 2344444455888999999999999999999 7888999999 99999
Q ss_pred ChHHHHHHHHHHHhccCCCC
Q psy6098 357 DSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 357 d~~~~~~~~~lL~~l~~~~~ 376 (378)
+....+.++.+++++...|.
T Consensus 177 t~~E~~~Lf~~ir~Lk~~Gv 196 (500)
T COG1129 177 TVKETERLFDLIRRLKAQGV 196 (500)
T ss_pred CHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999987764
No 401
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.39 E-value=7.9e-13 Score=136.06 Aligned_cols=124 Identities=18% Similarity=0.166 Sum_probs=89.8
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccch------------------
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGE------------------ 288 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~------------------ 288 (378)
++.+++|+.+++.||+|+|||||++.|+|.+.+. .|.+++.++..- |+.+
T Consensus 355 nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~ 434 (588)
T PRK13657 355 SFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP 434 (588)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCC
Confidence 4678899999999999999999999999999886 788888655210 1111
Q ss_pred --hHHHHHHHHHHhhhhhhhhccC--ch----hhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 289 --GSRMVRELFVMASLKKLAFAHH--PL----LFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 289 --~~~~v~~~~~~a~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
+...+.+....+.+..+....+ .. ..-..+|+|++||++++|+ ++|+|++||| |++++|+
T Consensus 435 ~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDE----------pts~LD~ 504 (588)
T PRK13657 435 DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDE----------ATSALDV 504 (588)
T ss_pred CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC----------CccCCCH
Confidence 1222333333333332211111 11 1223599999999999999 9999999999 9999999
Q ss_pred HHHHHHHHHHHhcc
Q psy6098 359 EVQRTMLELLNQLD 372 (378)
Q Consensus 359 ~~~~~~~~lL~~l~ 372 (378)
.....+.+.|..+.
T Consensus 505 ~t~~~i~~~l~~~~ 518 (588)
T PRK13657 505 ETEAKVKAALDELM 518 (588)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999888763
No 402
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.39 E-value=8.3e-13 Score=134.23 Aligned_cols=125 Identities=21% Similarity=0.220 Sum_probs=91.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccch-----------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGE----------------- 288 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~----------------- 288 (378)
-++.+++|+.+++.||+|+|||||++.|+|.+.+. .|.+++.++.+- |+.+
T Consensus 341 i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~ 420 (529)
T TIGR02857 341 VSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLAR 420 (529)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccC
Confidence 35678899999999999999999999999999876 788888755211 1111
Q ss_pred ---hHHHHHHHHHHhhhhhhhhc------cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 289 ---GSRMVRELFVMASLKKLAFA------HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 289 ---~~~~v~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+...+.+..+.+.+..+... .........+|+|++||++++|+ .+|+|++||| |++++|
T Consensus 421 ~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE----------~ts~lD 490 (529)
T TIGR02857 421 PDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDE----------PTAHLD 490 (529)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeC----------cccccC
Confidence 11223333333333222111 11112334699999999999999 8999999999 999999
Q ss_pred hHHHHHHHHHHHhcc
Q psy6098 358 SEVQRTMLELLNQLD 372 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~ 372 (378)
+...+.+.+.|.++.
T Consensus 491 ~~~~~~i~~~l~~~~ 505 (529)
T TIGR02857 491 AETEALVTEALRALA 505 (529)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988764
No 403
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.39 E-value=6.8e-13 Score=135.44 Aligned_cols=124 Identities=19% Similarity=0.161 Sum_probs=86.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccch-----------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGE----------------- 288 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~----------------- 288 (378)
-++.+++|+.++|.||||+|||||++.|+|.+.++ .|.+++.++.+. ++.+
T Consensus 361 vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~ 440 (555)
T TIGR01194 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHA 440 (555)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccch
Confidence 35678899999999999999999999999999876 788887665220 1111
Q ss_pred hHHHHHHHHHHhhhhhhhh-ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHH
Q psy6098 289 GSRMVRELFVMASLKKLAF-AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML 365 (378)
Q Consensus 289 ~~~~v~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~ 365 (378)
+...+.+.++.+.+..... -+..+.....+|+|++||++++|+ .+|+|++||| |++++|+...+.+.
T Consensus 441 ~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE----------~ts~LD~~~~~~i~ 510 (555)
T TIGR01194 441 SLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDE----------WAADQDPAFKRFFY 510 (555)
T ss_pred hHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC----------CccCCCHHHHHHHH
Confidence 1112222222222221111 111122236799999999999999 8999999999 99999999998887
Q ss_pred H-HHHhc
Q psy6098 366 E-LLNQL 371 (378)
Q Consensus 366 ~-lL~~l 371 (378)
+ +++.+
T Consensus 511 ~~l~~~~ 517 (555)
T TIGR01194 511 EELLPDL 517 (555)
T ss_pred HHHHHHH
Confidence 6 44444
No 404
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.39 E-value=7.2e-13 Score=138.90 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=91.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccch-----------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGE----------------- 288 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~----------------- 288 (378)
-++.+++|+.+++.||+|+|||||++.|+|.+.+. .|.+++.++.+- |+.+
T Consensus 484 i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~ 563 (694)
T TIGR03375 484 VSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGA 563 (694)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCC
Confidence 35678899999999999999999999999999886 888888665220 1111
Q ss_pred ---hHHHHHHHHHHhhhhhhhhc------cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 289 ---GSRMVRELFVMASLKKLAFA------HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 289 ---~~~~v~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+...+.++.+.+.+..+... ......-..+|+|++||+++||+ .+|+|++||| |++++|
T Consensus 564 ~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE----------~Ts~LD 633 (694)
T TIGR03375 564 PYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDE----------PTSAMD 633 (694)
T ss_pred CCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCCCCC
Confidence 12223333333332222111 11111223699999999999999 8999999999 999999
Q ss_pred hHHHHHHHHHHHhcc
Q psy6098 358 SEVQRTMLELLNQLD 372 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~ 372 (378)
+.....+.+.|.++.
T Consensus 634 ~~te~~i~~~l~~~~ 648 (694)
T TIGR03375 634 NRSEERFKDRLKRWL 648 (694)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998774
No 405
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.39 E-value=6.6e-13 Score=137.46 Aligned_cols=123 Identities=20% Similarity=0.163 Sum_probs=86.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcc----ccc----ccchhHHHH--------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL----VQK----FIGEGSRMV-------------- 293 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l----~~~----~~~~~~~~v-------------- 293 (378)
-+|.+.+|+.++|+||||||||||+|+|+|...++ .|.+++... .+. ..+.....+
T Consensus 22 is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 101 (635)
T PRK11147 22 AELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRY 101 (635)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHH
Confidence 46788999999999999999999999999998775 666654211 000 000000000
Q ss_pred ------------HHHHHH---------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEE
Q psy6098 294 ------------RELFVM---------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIF 338 (378)
Q Consensus 294 ------------~~~~~~---------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~ 338 (378)
.+.+.. ..+..+.+. ....+..||+|++|++.++++ ..|+|||
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLL 179 (635)
T PRK11147 102 HDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNPDVLL 179 (635)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 000000 001122222 356778999999999999998 8999999
Q ss_pred EecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 339 MDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 339 lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
||| |++++|+.....+.++|.++.
T Consensus 180 LDE----------Pt~~LD~~~~~~L~~~L~~~~ 203 (635)
T PRK11147 180 LDE----------PTNHLDIETIEWLEGFLKTFQ 203 (635)
T ss_pred EcC----------CCCccCHHHHHHHHHHHHhCC
Confidence 999 999999999999999998874
No 406
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.39 E-value=7.7e-13 Score=121.47 Aligned_cols=126 Identities=21% Similarity=0.264 Sum_probs=88.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC--c-----eEEEeccCcccc---------c---ccchh----HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE--C-----TFIRVSGSELVQ---------K---FIGEG----SRMVR 294 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~--~-----~~i~~~~~~l~~---------~---~~~~~----~~~v~ 294 (378)
.++.+.+|+.++|.||||+|||||+++|+|..+ + ..|.+++.++.. . |+.+. ...+.
T Consensus 22 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~t~~ 101 (250)
T PRK14266 22 VNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIF 101 (250)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcchHH
Confidence 467889999999999999999999999999864 2 367777755421 0 11100 01222
Q ss_pred HHHHHhh------------------hhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCC
Q psy6098 295 ELFVMAS------------------LKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 295 ~~~~~a~------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~ 350 (378)
+.+.... +..+.+ .......+..+|.|++|+++++++ ..|+||++||
T Consensus 102 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE--------- 172 (250)
T PRK14266 102 DNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDE--------- 172 (250)
T ss_pred HHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC---------
Confidence 2222110 111111 112234567899999999999998 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccC
Q psy6098 351 ESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 351 ~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+..+..+.++|.++..
T Consensus 173 -P~~gLD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14266 173 -PCSALDPISTTKIEDLIHKLKE 194 (250)
T ss_pred -CCccCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998853
No 407
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=6.8e-13 Score=137.21 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=89.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccC----cccccc-c-chhHHHHHHHHH-----------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGS----ELVQKF-I-GEGSRMVRELFV----------- 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~----~l~~~~-~-~~~~~~v~~~~~----------- 298 (378)
-+|.+.+|+.++|+||||||||||+|+|+|.+.++ .|.+... -+.+.. . ......+.+.+.
T Consensus 331 isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 410 (638)
T PRK10636 331 IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKL 410 (638)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHH
Confidence 35678899999999999999999999999998765 5555321 111110 0 000111222111
Q ss_pred Hhhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 299 MASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 299 ~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
...+..+.+. ......+..||+|++|++.+++. ..|.|||||| ||+++|+.....+.++|.++.
T Consensus 411 ~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE----------Pt~~LD~~~~~~l~~~L~~~~ 477 (638)
T PRK10636 411 RDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE----------PTNHLDLDMRQALTEALIDFE 477 (638)
T ss_pred HHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------CCCCCCHHHHHHHHHHHHHcC
Confidence 0113333343 24556788999999999999998 8999999999 999999999999999999874
No 408
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.38 E-value=3.3e-13 Score=113.65 Aligned_cols=123 Identities=21% Similarity=0.268 Sum_probs=93.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccchhH-------------------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGEGS------------------------- 290 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~~~------------------------- 290 (378)
-+|.+..+..++++|.||+|||||+|+|+|+..|+ .|.+++..+.-.......
T Consensus 32 vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd 111 (267)
T COG4167 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILD 111 (267)
T ss_pred eEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhc
Confidence 47788889999999999999999999999999987 889988876221111011
Q ss_pred ------------HHHHHHHHHhhhhhhhh-ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCC
Q psy6098 291 ------------RMVRELFVMASLKKLAF-AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSG 355 (378)
Q Consensus 291 ------------~~v~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~ 355 (378)
..-+++|+ .++.+++ ..+.+..+..++.+.+|+++.+|+ -.|.||+.|| ..++
T Consensus 112 ~PL~l~T~~~~~~R~~~i~~--TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDe----------Al~~ 179 (267)
T COG4167 112 FPLRLNTDLEPEQRRKQIFE--TLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADE----------ALAS 179 (267)
T ss_pred chhhhcccCChHHHHHHHHH--HHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehh----------hhhh
Confidence 11122222 2344443 456677788899999999999999 8999999999 6778
Q ss_pred CChHHHHHHHHHHHhcc
Q psy6098 356 GDSEVQRTMLELLNQLD 372 (378)
Q Consensus 356 ~d~~~~~~~~~lL~~l~ 372 (378)
+|-..+.++.+++-++.
T Consensus 180 LD~smrsQl~NL~LeLQ 196 (267)
T COG4167 180 LDMSMRSQLINLMLELQ 196 (267)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999988888877664
No 409
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.38 E-value=2.1e-13 Score=127.24 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=60.2
Q ss_pred CCCCCCCChhHHHHHHHhhccC-------ceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTE-------CTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIK 77 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~-------~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~ 77 (378)
++.||||||||++|+++|..+. .+|+.+++++++++|+|+++.+++++|+.|. |++|||||++.+..
T Consensus 62 ll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~------~gvL~iDEi~~L~~ 135 (284)
T TIGR02880 62 SFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM------GGVLFIDEAYYLYR 135 (284)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHcc------CcEEEEechhhhcc
Confidence 4679999999999999998773 2799999999999999999999999998875 46999999999864
Q ss_pred c
Q psy6098 78 S 78 (378)
Q Consensus 78 ~ 78 (378)
.
T Consensus 136 ~ 136 (284)
T TIGR02880 136 P 136 (284)
T ss_pred C
Confidence 3
No 410
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.38 E-value=6.7e-13 Score=122.07 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=93.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC-ce------EEEeccCcccccc-------cc-------hh-------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-CT------FIRVSGSELVQKF-------IG-------EG------- 289 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~-~~------~i~~~~~~l~~~~-------~~-------~~------- 289 (378)
-+|.+..|+.++|+|.+|||||+++++|.+++. ++ .|.+++.++.... .| +.
T Consensus 24 vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnP 103 (316)
T COG0444 24 VSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNP 103 (316)
T ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCC
Confidence 477899999999999999999999999999997 32 5778887663211 00 00
Q ss_pred ----HHHHHHHHH-------------Hh--hhhhhhhcc---CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccc
Q psy6098 290 ----SRMVRELFV-------------MA--SLKKLAFAH---HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSI 345 (378)
Q Consensus 290 ----~~~v~~~~~-------------~a--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~ 345 (378)
...+.+.+. .+ .++.+.+.. ....++..+|+|++||+.+|-+ ..|.+||-||
T Consensus 104 v~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADE---- 179 (316)
T COG0444 104 VMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADE---- 179 (316)
T ss_pred hhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCC----
Confidence 011222211 11 133333332 3456777999999999988887 8999999999
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 346 GSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 346 ~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
||+++|...+..++++|++|..
T Consensus 180 ------PTTALDvt~QaqIl~Ll~~l~~ 201 (316)
T COG0444 180 ------PTTALDVTVQAQILDLLKELQR 201 (316)
T ss_pred ------CcchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986
No 411
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.38 E-value=8.8e-13 Score=135.40 Aligned_cols=125 Identities=18% Similarity=0.151 Sum_probs=89.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccch-----------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGE----------------- 288 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~----------------- 288 (378)
-++.+++|+.++|.||||+|||||++.|+|.+.+. .|.+++.++..- |+.+
T Consensus 354 i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~ 433 (585)
T TIGR01192 354 VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGR 433 (585)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCC
Confidence 35678899999999999999999999999999876 788877544210 1111
Q ss_pred ---hHHHHHHHHHHhhhhhhhh------ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 289 ---GSRMVRELFVMASLKKLAF------AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 289 ---~~~~v~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+...+.+....+.+..... ..........+|+|++||++++|+ .+|+|++||| |++++|
T Consensus 434 ~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDE----------pts~LD 503 (585)
T TIGR01192 434 EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDE----------ATSALD 503 (585)
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC----------CccCCC
Confidence 1112222222222222111 111222344699999999999999 9999999999 999999
Q ss_pred hHHHHHHHHHHHhcc
Q psy6098 358 SEVQRTMLELLNQLD 372 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~ 372 (378)
+...+.+.+.|.++.
T Consensus 504 ~~~~~~i~~~l~~~~ 518 (585)
T TIGR01192 504 VETEARVKNAIDALR 518 (585)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998774
No 412
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.38 E-value=8.3e-13 Score=134.75 Aligned_cols=124 Identities=19% Similarity=0.092 Sum_probs=86.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCc-c---cccccchhHHHHHHHHHHh-----------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSE-L---VQKFIGEGSRMVRELFVMA----------- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~-l---~~~~~~~~~~~v~~~~~~a----------- 300 (378)
-+|.+.+|+.++|+||||+|||||+++|+|...+. .|.+++.. + .+...-....++.+.+..+
T Consensus 24 is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~ 103 (552)
T TIGR03719 24 ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRF 103 (552)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHH
Confidence 46789999999999999999999999999998765 55554321 1 1110000001111111110
Q ss_pred ------------------------------------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeE
Q psy6098 301 ------------------------------------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSI 336 (378)
Q Consensus 301 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~v 336 (378)
.+..+.+. .....+..+|+|++|++.++++ ..|.|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~l 182 (552)
T TIGR03719 104 NEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADVTKLSGGERRRVALCRLLLSKPDM 182 (552)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCchhhcCHHHHHHHHHHHHHhcCCCE
Confidence 00111111 2355678999999999999998 89999
Q ss_pred EEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 337 IFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 337 l~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
|+||| |++++|+..+..+.++|.++.
T Consensus 183 LLLDE----------Pt~~LD~~~~~~l~~~L~~~~ 208 (552)
T TIGR03719 183 LLLDE----------PTNHLDAESVAWLEQHLQEYP 208 (552)
T ss_pred EEEcC----------CCCCCChHHHHHHHHHHHhCC
Confidence 99999 999999999999999998764
No 413
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.38 E-value=5.2e-13 Score=137.69 Aligned_cols=130 Identities=21% Similarity=0.219 Sum_probs=94.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-----eEEEeccCcccc-------cccchh-----HHHHHHHHHHh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-----TFIRVSGSELVQ-------KFIGEG-----SRMVRELFVMA 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-----~~i~~~~~~l~~-------~~~~~~-----~~~v~~~~~~a 300 (378)
-++.+.+|+.++|.||||+|||||+++|+|...+ ..|.++|..+.. .|+.+. ..++++.+..+
T Consensus 44 vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~ 123 (617)
T TIGR00955 44 VSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQ 123 (617)
T ss_pred CEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHH
Confidence 4567899999999999999999999999998764 258888865421 122211 12444444321
Q ss_pred --------------------hhhhhhhccCchhhhh------Hhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCC
Q psy6098 301 --------------------SLKKLAFAHHPLLFWS------LLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIES 352 (378)
Q Consensus 301 --------------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~ 352 (378)
.++.+++.+..+..+. .+|+|++||+.++++ .+|+|+|+|| |
T Consensus 124 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE----------P 193 (617)
T TIGR00955 124 AHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE----------P 193 (617)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC----------C
Confidence 1222333333344443 599999999999999 8999999999 9
Q ss_pred CCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 353 GSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 353 ~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
++|+|+.....+.+.|+++...+.|
T Consensus 194 tsgLD~~~~~~l~~~L~~l~~~g~t 218 (617)
T TIGR00955 194 TSGLDSFMAYSVVQVLKGLAQKGKT 218 (617)
T ss_pred CcchhHHHHHHHHHHHHHHHhCCCE
Confidence 9999999999999999998755544
No 414
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.38 E-value=1.1e-12 Score=134.74 Aligned_cols=124 Identities=21% Similarity=0.221 Sum_probs=90.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------c---ccc------------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------K---FIG------------------ 287 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~---~~~------------------ 287 (378)
-++.+++|+.+++.||+|+|||||+++|+|.+.+. .|.+++.++.. + |+.
T Consensus 351 inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~ 430 (571)
T TIGR02203 351 ISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGR 430 (571)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCC
Confidence 35678899999999999999999999999999876 88888865411 0 111
Q ss_pred ---hhHHHHHHHHHHhhhhhhhhccC--chh----hhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCC
Q psy6098 288 ---EGSRMVRELFVMASLKKLAFAHH--PLL----FWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGG 356 (378)
Q Consensus 288 ---~~~~~v~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~ 356 (378)
.+...+.++++.+.+..+..+.+ .+. .-..+|+|++||++++|+ .+|+|++||| |++++
T Consensus 431 ~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDE----------pts~L 500 (571)
T TIGR02203 431 TEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDE----------ATSAL 500 (571)
T ss_pred CCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC----------ccccC
Confidence 12223334444443333221111 111 113599999999999999 8999999999 99999
Q ss_pred ChHHHHHHHHHHHhc
Q psy6098 357 DSEVQRTMLELLNQL 371 (378)
Q Consensus 357 d~~~~~~~~~lL~~l 371 (378)
|+.....+.+.|.++
T Consensus 501 D~~~~~~i~~~L~~~ 515 (571)
T TIGR02203 501 DNESERLVQAALERL 515 (571)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998876
No 415
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.38 E-value=9e-13 Score=138.10 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=91.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccch-----------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGE----------------- 288 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~----------------- 288 (378)
-++.+++|+.+++.||||+|||||+++|+|.+.+. .|.+++.++.+- |+.+
T Consensus 476 i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~ 555 (694)
T TIGR01846 476 LNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCN 555 (694)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCC
Confidence 35678899999999999999999999999999876 888888765210 1111
Q ss_pred ---hHHHHHHHHHHhhhhhhh------hccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 289 ---GSRMVRELFVMASLKKLA------FAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 289 ---~~~~v~~~~~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+...+.++.+.+.+..+. ...........+|+|++|+++++|+ .+|+|++||| |++++|
T Consensus 556 ~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDE----------pts~LD 625 (694)
T TIGR01846 556 PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDE----------ATSALD 625 (694)
T ss_pred CCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC----------CCcCCC
Confidence 122233333333322221 1111222345799999999999999 8999999999 999999
Q ss_pred hHHHHHHHHHHHhcc
Q psy6098 358 SEVQRTMLELLNQLD 372 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~ 372 (378)
+.....+.+.|.++.
T Consensus 626 ~~~~~~i~~~l~~~~ 640 (694)
T TIGR01846 626 YESEALIMRNMREIC 640 (694)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998874
No 416
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.37 E-value=1.9e-12 Score=125.48 Aligned_cols=137 Identities=25% Similarity=0.387 Sum_probs=88.4
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhhh----cCCC-CCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCccc-ccc
Q psy6098 212 MVGGLDNQIKEIKEVIELPVKHPELFDA----LGIA-QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV-QKF 285 (378)
Q Consensus 212 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~----~~~~-~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~-~~~ 285 (378)
.++|++++++.+..++...++.-..... -++. .+..++|+||||||||++++++|..++.+++.++...+. ..|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 4789999999998777543332111000 0111 234799999999999999999999999999888887764 357
Q ss_pred cchhHH-HHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHH
Q psy6098 286 IGEGSR-MVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 364 (378)
Q Consensus 286 ~~~~~~-~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~ 364 (378)
+|+... .+...+..+. ..+....++||||||||++.+++.+|+.+.|.......
T Consensus 158 vG~d~e~~L~~~~~~~~-------------------------~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq 212 (413)
T TIGR00382 158 VGEDVENILLKLLQAAD-------------------------YDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQ 212 (413)
T ss_pred ccccHHHHHHHHHHhCc-------------------------ccHHhcccceEEecccchhchhhccccccccccchhHH
Confidence 777533 3333332210 00023478899999999999987767665554433334
Q ss_pred HHHHHhccC
Q psy6098 365 LELLNQLDG 373 (378)
Q Consensus 365 ~~lL~~l~~ 373 (378)
..||+-|+|
T Consensus 213 ~~LL~iLeG 221 (413)
T TIGR00382 213 QALLKIIEG 221 (413)
T ss_pred HHHHHHhhc
Confidence 444444444
No 417
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.37 E-value=8.4e-13 Score=122.95 Aligned_cols=123 Identities=17% Similarity=0.085 Sum_probs=81.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccC-cc-cccccchhHHHHHHHHHHh----------hhh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGS-EL-VQKFIGEGSRMVRELFVMA----------SLK 303 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~-~l-~~~~~~~~~~~v~~~~~~a----------~~~ 303 (378)
-++.+.+|+.++|+||||+|||||+++|+|.+.+. .|.+++. .+ .+...- ....+.+.+... .+.
T Consensus 56 vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l-~~~tv~enl~~~~~~~~~~~~~~l~ 134 (282)
T cd03291 56 INLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWI-MPGTIKENIIFGVSYDEYRYKSVVK 134 (282)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccc-cccCHHHHhhcccccCHHHHHHHHH
Confidence 46789999999999999999999999999998765 5655541 00 111000 001122221110 001
Q ss_pred hhhhc------c-----CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHH-HH
Q psy6098 304 KLAFA------H-----HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL-LN 369 (378)
Q Consensus 304 ~~~~~------~-----~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~l-L~ 369 (378)
...+. . .....+..+|.|++|+++++++ ..|+|+++|| |++++|+..+..+.+. +.
T Consensus 135 ~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDE----------Pt~gLD~~~~~~l~~~ll~ 204 (282)
T cd03291 135 ACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDS----------PFGYLDVFTEKEIFESCVC 204 (282)
T ss_pred HhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC----------CCccCCHHHHHHHHHHHHH
Confidence 00100 0 1111245899999999999998 8999999999 9999999998888764 44
Q ss_pred hc
Q psy6098 370 QL 371 (378)
Q Consensus 370 ~l 371 (378)
.+
T Consensus 205 ~~ 206 (282)
T cd03291 205 KL 206 (282)
T ss_pred Hh
Confidence 44
No 418
>KOG0055|consensus
Probab=99.37 E-value=1.1e-12 Score=138.45 Aligned_cols=124 Identities=22% Similarity=0.260 Sum_probs=93.0
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc---c---------------------------c
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK---F---------------------------I 286 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~---~---------------------------~ 286 (378)
++.+++|+.++|.||+||||||+++.|++.+.|+ .|.++|.++... | .
T Consensus 373 sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~ 452 (1228)
T KOG0055|consen 373 SLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKP 452 (1228)
T ss_pred EEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCC
Confidence 5678999999999999999999999999999998 899999877221 0 1
Q ss_pred chhHHHHHHHHHHhhhhhhhh------ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 287 GEGSRMVRELFVMASLKKLAF------AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 287 ~~~~~~v~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
..+...+.++.++|....+.. +..-..+=..||+|++||+++||+ .+|.||+||| ||+++|+
T Consensus 453 dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDE----------aTSaLD~ 522 (1228)
T KOG0055|consen 453 DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDE----------ATSALDA 522 (1228)
T ss_pred cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecC----------cccccCH
Confidence 112334445554444333321 111111122499999999999999 8999999999 9999999
Q ss_pred HHHHHHHHHHHhcc
Q psy6098 359 EVQRTMLELLNQLD 372 (378)
Q Consensus 359 ~~~~~~~~lL~~l~ 372 (378)
+.++.+.+.|....
T Consensus 523 ~se~~Vq~ALd~~~ 536 (1228)
T KOG0055|consen 523 ESERVVQEALDKAS 536 (1228)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
No 419
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.37 E-value=1.3e-12 Score=121.00 Aligned_cols=126 Identities=18% Similarity=0.210 Sum_probs=87.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCccc-----------cc---ccchh----HHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSELV-----------QK---FIGEG----SRM 292 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l~-----------~~---~~~~~----~~~ 292 (378)
-+|.+.+|+.++|.||||+|||||+++|+|...+ ..|.+++..+. .. |+.+. ..+
T Consensus 35 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t 114 (265)
T PRK14252 35 INMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKS 114 (265)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcch
Confidence 4678899999999999999999999999998753 26666553221 00 11110 012
Q ss_pred HHHHHHHhh------------------hhhhhh----ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCC
Q psy6098 293 VRELFVMAS------------------LKKLAF----AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSS 348 (378)
Q Consensus 293 v~~~~~~a~------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~ 348 (378)
+.+.+.... +..+.. .......+..+|.|++|++.++++ ..|.|++|||
T Consensus 115 v~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE------- 187 (265)
T PRK14252 115 IFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDE------- 187 (265)
T ss_pred HHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC-------
Confidence 333222110 111111 112234566899999999999998 8999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 349 RIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 349 r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|+.....+.++|.++..
T Consensus 188 ---Pt~gLD~~~~~~l~~~l~~l~~ 209 (265)
T PRK14252 188 ---PTSALDPIATASIEELISDLKN 209 (265)
T ss_pred ---CCccCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999998754
No 420
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.36 E-value=1.3e-12 Score=133.72 Aligned_cols=125 Identities=18% Similarity=0.197 Sum_probs=88.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccchh----HHHHHHHH----
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGEG----SRMVRELF---- 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~~----~~~v~~~~---- 297 (378)
-++.+++|+.++|.||||+|||||+++|+|.+.++ .|.+++.++... |+.+. ..++++++
T Consensus 334 i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~ 413 (569)
T PRK10789 334 VNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGR 413 (569)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCC
Confidence 35678899999999999999999999999999876 788887654210 11110 11233332
Q ss_pred ------------HHhhhhhhhh------ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 298 ------------VMASLKKLAF------AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 298 ------------~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+.+.+..... ..........+|+|++||++++|+ .+|+|++||| |++++|
T Consensus 414 ~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDE----------pts~LD 483 (569)
T PRK10789 414 PDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDD----------ALSAVD 483 (569)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC----------ccccCC
Confidence 2222211111 111112234699999999999999 9999999999 999999
Q ss_pred hHHHHHHHHHHHhcc
Q psy6098 358 SEVQRTMLELLNQLD 372 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~ 372 (378)
+.....+.+.|.++.
T Consensus 484 ~~~~~~i~~~l~~~~ 498 (569)
T PRK10789 484 GRTEHQILHNLRQWG 498 (569)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998763
No 421
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.36 E-value=2.8e-12 Score=113.32 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=81.7
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce-----------EEEeccCcccc----c---ccch---------hHH
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-----------FIRVSGSELVQ----K---FIGE---------GSR 291 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-----------~i~~~~~~l~~----~---~~~~---------~~~ 291 (378)
++.+.+| .++|+||||+|||||+++|++.+++. .+.+.+.+... . ++.+ ...
T Consensus 17 ~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~ 95 (197)
T cd03278 17 TIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQG 95 (197)
T ss_pred eeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehh
Confidence 4567777 89999999999999999999887432 12222222100 0 0000 112
Q ss_pred HHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhccccc------CCCeEEEEecCccccCCCCCCCCCCChHHHHHHH
Q psy6098 292 MVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE------HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML 365 (378)
Q Consensus 292 ~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~ 365 (378)
.+.++++. .......+..+|.|++|++++++. .+|.+++||| |++++|+.....+.
T Consensus 96 ~~~~~l~~--------~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE----------P~~~LD~~~~~~l~ 157 (197)
T cd03278 96 DVSEIIEA--------PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE----------VDAALDDANVERFA 157 (197)
T ss_pred hHHHHHhC--------CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC----------CcccCCHHHHHHHH
Confidence 23333322 344566788999999999999886 3568999999 99999999999999
Q ss_pred HHHHhccC
Q psy6098 366 ELLNQLDG 373 (378)
Q Consensus 366 ~lL~~l~~ 373 (378)
++|.++..
T Consensus 158 ~~l~~~~~ 165 (197)
T cd03278 158 RLLKEFSK 165 (197)
T ss_pred HHHHHhcc
Confidence 99998753
No 422
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.36 E-value=1.8e-12 Score=129.59 Aligned_cols=125 Identities=23% Similarity=0.177 Sum_probs=89.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccC----cccccccchh-----------HHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGS----ELVQKFIGEG-----------SRMVRELF--- 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~----~l~~~~~~~~-----------~~~v~~~~--- 297 (378)
.++.+.+|+.++|+|+||+|||||+|+|+|...+. .|..... -+.+...... ...+.++.
T Consensus 22 ~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~ 101 (530)
T COG0488 22 VSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAEL 101 (530)
T ss_pred CcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHH
Confidence 46788999999999999999999999999998766 4555432 1111111110 00010000
Q ss_pred ----------------------HH-------h----hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecC
Q psy6098 298 ----------------------VM-------A----SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEI 342 (378)
Q Consensus 298 ----------------------~~-------a----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEi 342 (378)
.. + .+..+++... ...+..+|+|.+.|+.+|+. .+|++|+|||
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDE- 179 (530)
T COG0488 102 EEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDE- 179 (530)
T ss_pred HHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcC-
Confidence 00 0 0122223333 77889999999999999999 9999999999
Q ss_pred ccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 343 DSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 343 d~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
||+++|-.+...+-++|...++
T Consensus 180 ---------PTNHLD~~~i~WLe~~L~~~~g 201 (530)
T COG0488 180 ---------PTNHLDLESIEWLEDYLKRYPG 201 (530)
T ss_pred ---------CCcccCHHHHHHHHHHHHhCCC
Confidence 9999999999999999998776
No 423
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.36 E-value=1.4e-12 Score=136.78 Aligned_cols=119 Identities=21% Similarity=0.233 Sum_probs=87.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccc------------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIG------------------ 287 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~------------------ 287 (378)
-++.+++|+.++|.||+|+|||||++.|+|.+.+. .|.++|.++.+- |+.
T Consensus 500 isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~ 579 (711)
T TIGR00958 500 LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGL 579 (711)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCC
Confidence 35778999999999999999999999999999886 888888655210 111
Q ss_pred --hhHHHHHHHHHHhhhhhhhhc------cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 288 --EGSRMVRELFVMASLKKLAFA------HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 288 --~~~~~v~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
.+...+.++.+.+.+..+... ......-..+|+|++||++++|+ .+|+|++||| |++++|
T Consensus 580 ~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDE----------pTSaLD 649 (711)
T TIGR00958 580 TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDE----------ATSALD 649 (711)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEc----------cccccC
Confidence 122334444444443332211 11111224699999999999999 9999999999 999999
Q ss_pred hHHHHHHHH
Q psy6098 358 SEVQRTMLE 366 (378)
Q Consensus 358 ~~~~~~~~~ 366 (378)
++..+.+.+
T Consensus 650 ~~te~~i~~ 658 (711)
T TIGR00958 650 AECEQLLQE 658 (711)
T ss_pred HHHHHHHHH
Confidence 999888887
No 424
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.35 E-value=1.6e-12 Score=132.64 Aligned_cols=123 Identities=19% Similarity=0.172 Sum_probs=84.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccchhH----HHHHHH---HH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGEGS----RMVREL---FV 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~~~----~~v~~~---~~ 298 (378)
-++.+++|+.++|.||||+|||||++.|+|.+.++ .|.+++.++.+. |+.+.. ..+++. ..
T Consensus 342 i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~ 421 (547)
T PRK10522 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPAN 421 (547)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchH
Confidence 35678899999999999999999999999999876 788888765321 111111 111111 00
Q ss_pred H----hhhhhhhhccCchh-----hhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHH
Q psy6098 299 M----ASLKKLAFAHHPLL-----FWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL 367 (378)
Q Consensus 299 ~----a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~l 367 (378)
. ..++.+........ .-..+|+|++||++++|+ .+|+|++||| |++++|+.....+.+.
T Consensus 422 ~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE----------~ts~LD~~~~~~i~~~ 491 (547)
T PRK10522 422 PALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE----------WAADQDPHFRREFYQV 491 (547)
T ss_pred HHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC----------CCCCCCHHHHHHHHHH
Confidence 0 01111111111000 123799999999999999 9999999999 9999999999888877
Q ss_pred HHh
Q psy6098 368 LNQ 370 (378)
Q Consensus 368 L~~ 370 (378)
|.+
T Consensus 492 l~~ 494 (547)
T PRK10522 492 LLP 494 (547)
T ss_pred HHH
Confidence 653
No 425
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.35 E-value=8e-13 Score=109.75 Aligned_cols=103 Identities=25% Similarity=0.283 Sum_probs=70.7
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccchhH-----HHHHHHHH---
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGEGS-----RMVRELFV--- 298 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~~~-----~~v~~~~~--- 298 (378)
++.+.+|+.++|+||||+|||||+++|+|...+. .|.+++.++... |+.+.. .++.+...
T Consensus 5 ~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~ 84 (137)
T PF00005_consen 5 SLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDER 84 (137)
T ss_dssp EEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHH
T ss_pred EEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5678899999999999999999999999998765 788887655331 111110 01111111
Q ss_pred -HhhhhhhhhccCchhhh----hHhhhhhhhhhccccc--CCCeEEEEec
Q psy6098 299 -MASLKKLAFAHHPLLFW----SLLTILTNTIVCNFRE--HAPSIIFMDE 341 (378)
Q Consensus 299 -~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~p~vl~lDE 341 (378)
...+..+.........+ ..+|.|++|++.++++ .+|.+++|||
T Consensus 85 ~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDE 134 (137)
T PF00005_consen 85 IEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDE 134 (137)
T ss_dssp HHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEES
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 11122333333333333 8999999999999998 8999999999
No 426
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.34 E-value=1.9e-12 Score=133.01 Aligned_cols=125 Identities=20% Similarity=0.169 Sum_probs=90.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccch-----------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGE----------------- 288 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~----------------- 288 (378)
-++.+++|+.+++.||+|+|||||+++|+|.+.+. .|.+++.++..- |+.+
T Consensus 359 inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~ 438 (576)
T TIGR02204 359 LNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGR 438 (576)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCC
Confidence 35788999999999999999999999999999876 888887554210 1111
Q ss_pred ---hHHHHHHHHHHhhhhhhhh------ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 289 ---GSRMVRELFVMASLKKLAF------AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 289 ---~~~~v~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+...+.+.++.+.+..+.. .......-..+|+|++||++++|+ .+|+|++||| |++++|
T Consensus 439 ~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDE----------pts~lD 508 (576)
T TIGR02204 439 PDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDE----------ATSALD 508 (576)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeC----------cccccC
Confidence 1122333333333222111 111112234699999999999999 8999999999 999999
Q ss_pred hHHHHHHHHHHHhcc
Q psy6098 358 SEVQRTMLELLNQLD 372 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~ 372 (378)
+...+.+.+.|..+.
T Consensus 509 ~~~~~~i~~~l~~~~ 523 (576)
T TIGR02204 509 AESEQLVQQALETLM 523 (576)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888773
No 427
>KOG0061|consensus
Probab=99.34 E-value=1.8e-12 Score=132.77 Aligned_cols=129 Identities=25% Similarity=0.263 Sum_probs=94.0
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce-----EEEeccCccc-------ccccch-----hHHHHHHHHHHhh
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-----FIRVSGSELV-------QKFIGE-----GSRMVRELFVMAS 301 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-----~i~~~~~~l~-------~~~~~~-----~~~~v~~~~~~a~ 301 (378)
+..+.+|+.+++.||+|+|||||++++||..... .|.+||.... ..|+.+ +..+|+|.+..+.
T Consensus 50 sg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A 129 (613)
T KOG0061|consen 50 SGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSA 129 (613)
T ss_pred EEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHH
Confidence 4467899999999999999999999999987642 8899983221 112221 1123333333221
Q ss_pred --------------------hhhhhhccCchhhh-----hHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCC
Q psy6098 302 --------------------LKKLAFAHHPLLFW-----SLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGS 354 (378)
Q Consensus 302 --------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~ 354 (378)
+..+++..-.+..+ ..+|+|+++|+.++.+ +.|+|+|+|| ||+
T Consensus 130 ~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDE----------PTS 199 (613)
T KOG0061|consen 130 LLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDE----------PTS 199 (613)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecC----------CCC
Confidence 22223333333333 4699999999999998 9999999999 999
Q ss_pred CCChHHHHHHHHHHHhccCCCCC
Q psy6098 355 GGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 355 ~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
|+|+.....+.++|+++...|.|
T Consensus 200 GLDS~sA~~vv~~Lk~lA~~grt 222 (613)
T KOG0061|consen 200 GLDSFSALQVVQLLKRLARSGRT 222 (613)
T ss_pred CcchhhHHHHHHHHHHHHhCCCE
Confidence 99999999999999999877765
No 428
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.33 E-value=2.4e-12 Score=131.89 Aligned_cols=125 Identities=20% Similarity=0.239 Sum_probs=93.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------cc-----------------c-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FI-----------------G- 287 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~-----------------~- 287 (378)
-++.+++|+.++|+||+||||||+++.|.+.+.++ .|.++|.++.+- ++ |
T Consensus 348 is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~ 427 (567)
T COG1132 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGR 427 (567)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCC
Confidence 36778999999999999999999999999999985 788888666211 11 1
Q ss_pred --hhHHHHHHHHHHhhhhhhhhccC--chh----hhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 288 --EGSRMVRELFVMASLKKLAFAHH--PLL----FWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 288 --~~~~~v~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
.+...+.++.+.+....+....+ .+. .-..+|+|++||+++||+ .+|+|++||| ||+++|
T Consensus 428 ~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDE----------aTSalD 497 (567)
T COG1132 428 PDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDE----------ATSALD 497 (567)
T ss_pred CCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEec----------cccccC
Confidence 13345555555554333322221 122 223699999999999999 8899999999 999999
Q ss_pred hHHHHHHHHHHHhcc
Q psy6098 358 SEVQRTMLELLNQLD 372 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~ 372 (378)
..+...+.+.+.++-
T Consensus 498 ~~tE~~I~~~l~~l~ 512 (567)
T COG1132 498 TETEALIQDALKKLL 512 (567)
T ss_pred HHhHHHHHHHHHHHh
Confidence 999999988887544
No 429
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.33 E-value=2.6e-12 Score=126.53 Aligned_cols=126 Identities=20% Similarity=0.199 Sum_probs=95.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce------EEEeccCcccccc--------------cch---------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT------FIRVSGSELVQKF--------------IGE--------- 288 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~------~i~~~~~~l~~~~--------------~~~--------- 288 (378)
-||.+.+|+.++|.|.+||||||++++|-|.+..+ .|.+++.++.... +.+
T Consensus 28 vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~ 107 (539)
T COG1123 28 VSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPV 107 (539)
T ss_pred ceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCch
Confidence 57889999999999999999999999999998754 6778887662210 000
Q ss_pred --hHHHHHHHHHH------------h--hhhhhhhccCchh--hhhHhhhhhhhhhccccc--CCCeEEEEecCccccCC
Q psy6098 289 --GSRMVRELFVM------------A--SLKKLAFAHHPLL--FWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSS 348 (378)
Q Consensus 289 --~~~~v~~~~~~------------a--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~ 348 (378)
-...+.+.+.. + .++.+.+.+.... .+..||+|++||+.+|.+ .+|.+|++||
T Consensus 108 ~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDE------- 180 (539)
T COG1123 108 MTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADE------- 180 (539)
T ss_pred hhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECC-------
Confidence 00122222111 1 1444455555554 788999999999999998 8999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 349 RIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 349 r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
||+++|+..+..++++|+++..
T Consensus 181 ---PTTaLDvt~q~qIL~llk~l~~ 202 (539)
T COG1123 181 ---PTTALDVTTQAQILDLLKDLQR 202 (539)
T ss_pred ---CccccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998863
No 430
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.32 E-value=2.1e-12 Score=110.04 Aligned_cols=127 Identities=23% Similarity=0.255 Sum_probs=96.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEecc-Cccccc--------ccc--------hhHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSG-SELVQK--------FIG--------EGSRMVRELFV 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~-~~l~~~--------~~~--------~~~~~v~~~~~ 298 (378)
-+|.+.+|+--+|+||||+||||++-.|+|...+. .+.+.+ .++... -+| ...-.++++++
T Consensus 24 ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLe 103 (249)
T COG4674 24 LSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLE 103 (249)
T ss_pred eEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHH
Confidence 36788999999999999999999999999999887 777777 455221 011 11124555555
Q ss_pred Hhh-------------------------hhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCC
Q psy6098 299 MAS-------------------------LKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIE 351 (378)
Q Consensus 299 ~a~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~ 351 (378)
.|. +...++....+.....||.|++|++++..- +.|.+|++||
T Consensus 104 lA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDE---------- 173 (249)
T COG4674 104 LALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDE---------- 173 (249)
T ss_pred HHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecC----------
Confidence 552 222234566667778899999999988775 8999999999
Q ss_pred CCCCCChHHHHHHHHHHHhccCC
Q psy6098 352 SGSGGDSEVQRTMLELLNQLDGF 374 (378)
Q Consensus 352 ~~~~~d~~~~~~~~~lL~~l~~~ 374 (378)
|.+|...+.....-++|+.+.+.
T Consensus 174 PvAGMTd~Et~~taeLl~~la~~ 196 (249)
T COG4674 174 PVAGMTDAETEKTAELLKSLAGK 196 (249)
T ss_pred ccCCCcHHHHHHHHHHHHHHhcC
Confidence 99999888888888999888754
No 431
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.32 E-value=4.8e-12 Score=121.25 Aligned_cols=89 Identities=30% Similarity=0.525 Sum_probs=67.7
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhhhc-CCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccc-cccc-h
Q psy6098 212 MVGGLDNQIKEIKEVIELPVKHPELFDAL-GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIG-E 288 (378)
Q Consensus 212 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~-~~~~-~ 288 (378)
-++|++++++.+..++...+......... .-.++.+++|+||||||||+++++||+.++.+++.++...+.. .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 48899999999988777543332221111 1224578999999999999999999999999999999988864 7888 4
Q ss_pred hHHHHHHHHHHh
Q psy6098 289 GSRMVRELFVMA 300 (378)
Q Consensus 289 ~~~~v~~~~~~a 300 (378)
.+..++..|..|
T Consensus 93 vE~i~r~l~e~A 104 (441)
T TIGR00390 93 VESMVRDLTDAA 104 (441)
T ss_pred HHHHHHHHHHHH
Confidence 667777777665
No 432
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.32 E-value=2.1e-12 Score=133.90 Aligned_cols=128 Identities=23% Similarity=0.219 Sum_probs=93.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----------c---ccc--------hh-HHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----------K---FIG--------EG-SRM 292 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----------~---~~~--------~~-~~~ 292 (378)
.+|.+.+|+.++|.||||+|||||+++|+|.+.++ .+.+++.++.. . |+. .+ ..+
T Consensus 27 vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~en 106 (648)
T PRK10535 27 ISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQN 106 (648)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHH
Confidence 46789999999999999999999999999998775 67777654321 0 111 11 111
Q ss_pred HHHHH-----------H--HhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 293 VRELF-----------V--MASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 293 v~~~~-----------~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+.... + ...++.+.+.......+..+|.|++|++.++++ .+|++|++|| |++++|
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDE----------P~~gLD 176 (648)
T PRK10535 107 VEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADE----------PTGALD 176 (648)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEC----------CCCCCC
Confidence 11000 0 111333344455566778999999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccCCC
Q psy6098 358 SEVQRTMLELLNQLDGFE 375 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~~~ 375 (378)
+..++.+.++|+++...+
T Consensus 177 ~~s~~~l~~ll~~l~~~g 194 (648)
T PRK10535 177 SHSGEEVMAILHQLRDRG 194 (648)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999885444
No 433
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.32 E-value=7.8e-12 Score=104.62 Aligned_cols=124 Identities=21% Similarity=0.198 Sum_probs=86.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEecc--C---ccccc--------------------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSG--S---ELVQK-------------------------- 284 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~--~---~l~~~-------------------------- 284 (378)
-+|.+.||+.+++.|.+|+|||||+++|++.+.++ .+.... . ++...
T Consensus 25 vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm 104 (258)
T COG4107 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRM 104 (258)
T ss_pred cceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCcccccee
Confidence 47889999999999999999999999999998876 333322 1 22110
Q ss_pred ------ccchhHH--------HHHHHHHHhhhhhhhh-ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccC
Q psy6098 285 ------FIGEGSR--------MVRELFVMASLKKLAF-AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGS 347 (378)
Q Consensus 285 ------~~~~~~~--------~v~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~ 347 (378)
.+||..- ++++.-... ++++.+ .......+..+|+|++|++.++|. ..|.++|+||
T Consensus 105 ~VSAG~NiGERlma~G~RHYG~iR~~a~~W-L~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDE------ 177 (258)
T COG4107 105 QVSAGGNIGERLMAIGARHYGNIRAEAQDW-LEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDE------ 177 (258)
T ss_pred eeccCCccchhHHhhhhhhhhhHHHHHHHH-HHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecC------
Confidence 0111000 111111110 222222 233444566899999999999998 8999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 348 SRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 348 ~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
|+.|+|...+..++.+++.+-
T Consensus 178 ----PTGGLDVSVQARLLDllrgLv 198 (258)
T COG4107 178 ----PTGGLDVSVQARLLDLLRGLV 198 (258)
T ss_pred ----CCCCcchhhHHHHHHHHHHHH
Confidence 999999999999999988664
No 434
>PLN03073 ABC transporter F family; Provisional
Probab=99.32 E-value=2.9e-12 Score=133.33 Aligned_cols=124 Identities=17% Similarity=0.208 Sum_probs=85.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCc----ccccccc---hhHHHHHHHH----------H
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSE----LVQKFIG---EGSRMVRELF----------V 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~----l~~~~~~---~~~~~v~~~~----------~ 298 (378)
-+|.+.+|+.++|+||||||||||+|+|+|.+.+. .|.+++.. +.+.... .......... .
T Consensus 528 vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i 607 (718)
T PLN03073 528 LNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL 607 (718)
T ss_pred cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHH
Confidence 35678899999999999999999999999998765 45543310 0111000 0000000000 0
Q ss_pred Hhhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhc
Q psy6098 299 MASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 371 (378)
Q Consensus 299 ~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l 371 (378)
...+..+.+. ......+..||+|++|+++++++ ..|.+|+||| |++++|+.....+.+.|.+.
T Consensus 608 ~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE----------PT~~LD~~s~~~l~~~L~~~ 673 (718)
T PLN03073 608 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDE----------PSNHLDLDAVEALIQGLVLF 673 (718)
T ss_pred HHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcC----------CCCCCCHHHHHHHHHHHHHc
Confidence 1112333333 23455678999999999999998 8999999999 99999999998888888765
No 435
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.7e-12 Score=118.01 Aligned_cols=138 Identities=24% Similarity=0.322 Sum_probs=95.9
Q ss_pred ccCcHHHHHHHHHHHhccccCchhh-hhcCCCC-CcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccc-cccchh
Q psy6098 213 VGGLDNQIKEIKEVIELPVKHPELF-DALGIAQ-PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIGEG 289 (378)
Q Consensus 213 i~g~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~-~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~-~~~~~~ 289 (378)
++|++.+|+.+.-++...+++-... .+-.+.- ..+++|+||.|||||.||+++|..+..+|..-+...|.+ .|+|+.
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED 142 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED 142 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh
Confidence 6799998888765544433321111 0011211 237999999999999999999999999999999888865 599998
Q ss_pred HHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHH
Q psy6098 290 SRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 369 (378)
Q Consensus 290 ~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~ 369 (378)
..++-..+-++..-.+ .+....||++||||+|+++..+|+-.-|....-+--.||+
T Consensus 143 VENillkLlqaadydV------------------------~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLK 198 (408)
T COG1219 143 VENILLKLLQAADYDV------------------------ERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLK 198 (408)
T ss_pred HHHHHHHHHHHcccCH------------------------HHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHH
Confidence 8776554444421111 1235679999999999999888887777666555556666
Q ss_pred hccCC
Q psy6098 370 QLDGF 374 (378)
Q Consensus 370 ~l~~~ 374 (378)
-++|.
T Consensus 199 iiEGT 203 (408)
T COG1219 199 IIEGT 203 (408)
T ss_pred HHcCc
Confidence 66654
No 436
>KOG0057|consensus
Probab=99.32 E-value=5e-12 Score=122.80 Aligned_cols=123 Identities=20% Similarity=0.251 Sum_probs=93.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce-EEEeccCccccc----------cc--------------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-FIRVSGSELVQK----------FI-------------------- 286 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-~i~~~~~~l~~~----------~~-------------------- 286 (378)
-+|.++.|+.+++.|+|||||||++|+|.+.+.-. .|.++|.++.+- ++
T Consensus 371 vsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~ 450 (591)
T KOG0057|consen 371 VSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNP 450 (591)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCC
Confidence 46788999999999999999999999999998833 899999887210 11
Q ss_pred chhHHHHHHHHHHhhhhhhhhcc--Cchh----hhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 287 GEGSRMVRELFVMASLKKLAFAH--HPLL----FWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 287 ~~~~~~v~~~~~~a~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
..+...|.+..+.+.+...-.+. -.++ +--.+|+|++|++.++|+ .+|+|+++|| |||.+|.
T Consensus 451 sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DE----------aTS~LD~ 520 (591)
T KOG0057|consen 451 SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDE----------ATSALDS 520 (591)
T ss_pred CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecC----------cccccch
Confidence 12334566666666554443221 1111 222599999999999999 8888999999 9999999
Q ss_pred HHHHHHHHHHHh
Q psy6098 359 EVQRTMLELLNQ 370 (378)
Q Consensus 359 ~~~~~~~~lL~~ 370 (378)
++.+.+.+.+..
T Consensus 521 ~TE~~i~~~i~~ 532 (591)
T KOG0057|consen 521 ETEREILDMIMD 532 (591)
T ss_pred hhHHHHHHHHHH
Confidence 999999888776
No 437
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.31 E-value=1.8e-12 Score=144.01 Aligned_cols=128 Identities=22% Similarity=0.249 Sum_probs=92.3
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhhcC---c--eEEEeccCcccc------cccch-----hHHHHHHHHHHhh--
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---C--TFIRVSGSELVQ------KFIGE-----GSRMVRELFVMAS-- 301 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~---~--~~i~~~~~~l~~------~~~~~-----~~~~v~~~~~~a~-- 301 (378)
+.+.+|+.++|.||||+|||||+++|+|... + ..|.++|.++.. .|+.+ ...++++.+..+.
T Consensus 784 ~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l 863 (1394)
T TIGR00956 784 GWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYL 863 (1394)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHh
Confidence 4577888999999999999999999999986 2 378888865421 12222 1224555544321
Q ss_pred ------------------hhhhhhccCchhhhh----Hhhhhhhhhhccccc--CCCe-EEEEecCccccCCCCCCCCCC
Q psy6098 302 ------------------LKKLAFAHHPLLFWS----LLTILTNTIVCNFRE--HAPS-IIFMDEIDSIGSSRIESGSGG 356 (378)
Q Consensus 302 ------------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~p~-vl~lDEid~~~~~r~~~~~~~ 356 (378)
++.+.+....+..+. .+|+|++||++++++ .+|+ |||||| |++|+
T Consensus 864 ~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDE----------PTsgL 933 (1394)
T TIGR00956 864 RQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDE----------PTSGL 933 (1394)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcC----------CCCCC
Confidence 122222333333333 699999999999998 8895 999999 99999
Q ss_pred ChHHHHHHHHHHHhccCCCCC
Q psy6098 357 DSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 357 d~~~~~~~~~lL~~l~~~~~~ 377 (378)
|+.....+.++|+++...|.|
T Consensus 934 D~~~~~~i~~~L~~la~~g~t 954 (1394)
T TIGR00956 934 DSQTAWSICKLMRKLADHGQA 954 (1394)
T ss_pred CHHHHHHHHHHHHHHHHcCCE
Confidence 999999999999998655543
No 438
>PLN03140 ABC transporter G family member; Provisional
Probab=99.30 E-value=2.4e-12 Score=142.80 Aligned_cols=129 Identities=23% Similarity=0.227 Sum_probs=91.8
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc----eEEEeccCcccc-------cccchh-----HHHHHHHHHHhh-
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC----TFIRVSGSELVQ-------KFIGEG-----SRMVRELFVMAS- 301 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~----~~i~~~~~~l~~-------~~~~~~-----~~~v~~~~~~a~- 301 (378)
++.+.+|+.++|.||||+|||||+++|+|.... ..|.+++.+... .|+.+. ..++++.+..+.
T Consensus 900 s~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~ 979 (1470)
T PLN03140 900 TGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAF 979 (1470)
T ss_pred EEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHH
Confidence 345778899999999999999999999998753 267777754321 122221 124555443321
Q ss_pred -------------------hhhhhhccCchhh-----hhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCC
Q psy6098 302 -------------------LKKLAFAHHPLLF-----WSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSG 355 (378)
Q Consensus 302 -------------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~ 355 (378)
++.+.+....... ...+|+|++||+.++++ .+|+|||||| |++|
T Consensus 980 lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDE----------PTsg 1049 (1470)
T PLN03140 980 LRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDE----------PTSG 1049 (1470)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeC----------CCCC
Confidence 1122222222232 25799999999999998 9999999999 9999
Q ss_pred CChHHHHHHHHHHHhccCCCCC
Q psy6098 356 GDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 356 ~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
+|+..+..++++|+++...|.|
T Consensus 1050 LD~~~a~~v~~~L~~l~~~g~t 1071 (1470)
T PLN03140 1050 LDARAAAIVMRTVRNTVDTGRT 1071 (1470)
T ss_pred CCHHHHHHHHHHHHHHHHCCCE
Confidence 9999999999999998665543
No 439
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=7.6e-12 Score=109.44 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=90.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce----EEEeccCcccccccchhHH----------------HHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT----FIRVSGSELVQKFIGEGSR----------------MVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~----~i~~~~~~l~~~~~~~~~~----------------~v~~~~ 297 (378)
-++.+++|+..+|.||||+|||||+++|+|.-+-. .|.++|.++....+.|-.+ ++.+.+
T Consensus 23 vnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fL 102 (251)
T COG0396 23 VNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFL 102 (251)
T ss_pred cceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHH
Confidence 35678999999999999999999999999986532 7899998884432221111 111111
Q ss_pred HHh--------------------hhhhhhhcc-Cchhhh-hHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCC
Q psy6098 298 VMA--------------------SLKKLAFAH-HPLLFW-SLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESG 353 (378)
Q Consensus 298 ~~a--------------------~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~ 353 (378)
..+ .+..+++.. .....+ ..+|+|+++|.+++.. ..|.+.+||| |.
T Consensus 103 r~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE----------~D 172 (251)
T COG0396 103 RAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDE----------PD 172 (251)
T ss_pred HHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecC----------CC
Confidence 111 112222222 111111 2699999999988776 8999999999 77
Q ss_pred CCCChHHHHHHHHHHHhccCCCC
Q psy6098 354 SGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 354 ~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
||+|..+-+.+.+.++.|.+.+.
T Consensus 173 SGLDIdalk~V~~~i~~lr~~~~ 195 (251)
T COG0396 173 SGLDIDALKIVAEGINALREEGR 195 (251)
T ss_pred cCccHHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999887654
No 440
>KOG0059|consensus
Probab=99.29 E-value=3.7e-12 Score=135.91 Aligned_cols=128 Identities=18% Similarity=0.195 Sum_probs=101.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------cccchhHH--------HHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------KFIGEGSR--------MVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~~~~~~~~--------~v~~~~~~ 299 (378)
-++++++++++++.||||+||||+.+++.|...+. .+.++|.++.. +.+|..++ +.+|.+..
T Consensus 584 ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~ 663 (885)
T KOG0059|consen 584 LSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEF 663 (885)
T ss_pred eEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHH
Confidence 56789999999999999999999999999999887 67777776632 11222111 22332221
Q ss_pred h-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 300 A-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 300 a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
. .++.+.+..+.......+|+|+++++..+-+ ..|+|||||| |++|+||.+
T Consensus 664 ~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDE----------PstGmDP~a 733 (885)
T KOG0059|consen 664 YARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDE----------PSTGLDPKA 733 (885)
T ss_pred HHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecC----------CCCCCCHHH
Confidence 1 2445567788888899999999999988887 8999999999 999999999
Q ss_pred HHHHHHHHHhccCCC
Q psy6098 361 QRTMLELLNQLDGFE 375 (378)
Q Consensus 361 ~~~~~~lL~~l~~~~ 375 (378)
++.+++++.++...+
T Consensus 734 rr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 734 RRHLWDIIARLRKNG 748 (885)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999988755
No 441
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.29 E-value=3.7e-12 Score=119.43 Aligned_cols=126 Identities=21% Similarity=0.256 Sum_probs=94.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce-EEEeccCccccc------------------ccc-hhH-HHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-FIRVSGSELVQK------------------FIG-EGS-RMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-~i~~~~~~l~~~------------------~~~-~~~-~~v~~~ 296 (378)
-++.+.+|+.+++.|.+||||||+.++|.+++.+. .|.+.|.++... ..| -++ .+|.++
T Consensus 306 isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qI 385 (534)
T COG4172 306 ISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQI 385 (534)
T ss_pred ceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHH
Confidence 46678899999999999999999999999999887 899988877221 001 000 112222
Q ss_pred HHHh-------------------hhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCC
Q psy6098 297 FVMA-------------------SLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGS 354 (378)
Q Consensus 297 ~~~a-------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~ 354 (378)
+... .+..+++. .....++..+|+|.+|++++||+ -+|.+|+||| |||
T Consensus 386 I~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDE----------PTS 455 (534)
T COG4172 386 IEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDE----------PTS 455 (534)
T ss_pred hhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecC----------Cch
Confidence 2211 13333333 23344566899999999999999 8999999999 999
Q ss_pred CCChHHHHHHHHHHHhccC
Q psy6098 355 GGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 355 ~~d~~~~~~~~~lL~~l~~ 373 (378)
++|...+.++.++|+.|..
T Consensus 456 ALD~SVQaQvv~LLr~LQ~ 474 (534)
T COG4172 456 ALDRSVQAQVLDLLRDLQQ 474 (534)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 9999999999999998864
No 442
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.29 E-value=6e-12 Score=140.19 Aligned_cols=124 Identities=15% Similarity=0.217 Sum_probs=91.7
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-----------------------------------------------
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC----------------------------------------------- 271 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~----------------------------------------------- 271 (378)
++.+++|+.++|+||+||||||+++.|.+.+.+
T Consensus 1188 sl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1267 (1466)
T PTZ00265 1188 TFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSG 1267 (1466)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 466788999999999999999999999999987
Q ss_pred -------e--EEEeccCccccc----------ccc--------------------hhHHHHHHHHHHhhhhhhhhccCc-
Q psy6098 272 -------T--FIRVSGSELVQK----------FIG--------------------EGSRMVRELFVMASLKKLAFAHHP- 311 (378)
Q Consensus 272 -------~--~i~~~~~~l~~~----------~~~--------------------~~~~~v~~~~~~a~~~~~~~~~~~- 311 (378)
. .|.++|.++.+- |+. .+...+.++.+.|.+..+....+.
T Consensus 1268 ~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~G 1347 (1466)
T PTZ00265 1268 EDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNK 1347 (1466)
T ss_pred cccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccc
Confidence 2 688888766210 111 122344555555544443222111
Q ss_pred -hh----hhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 312 -LL----FWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 312 -~~----~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
.. .-..||+|++||+++||+ ..|+||+||| ||+++|++..+.+.+.|.++.
T Consensus 1348 ydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDE----------aTSaLD~~sE~~I~~~L~~~~ 1405 (1466)
T PTZ00265 1348 YDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDE----------ATSSLDSNSEKLIEKTIVDIK 1405 (1466)
T ss_pred cCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC----------cccccCHHHHHHHHHHHHHHh
Confidence 11 223699999999999999 8999999999 999999999999999888873
No 443
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.28 E-value=5.7e-12 Score=102.97 Aligned_cols=121 Identities=20% Similarity=0.152 Sum_probs=95.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce-----EEEeccCccc-----cc---------------ccch----
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-----FIRVSGSELV-----QK---------------FIGE---- 288 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-----~i~~~~~~l~-----~~---------------~~~~---- 288 (378)
-++.|.+|+++-|.||+|||||||+..++|.+.+. .+.+++..+. ++ .+++
T Consensus 21 ~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~f 100 (213)
T COG4136 21 VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLF 100 (213)
T ss_pred eeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEE
Confidence 46789999999999999999999999999988765 4566665441 11 1111
Q ss_pred -----hHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHH
Q psy6098 289 -----GSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 361 (378)
Q Consensus 289 -----~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~ 361 (378)
-..+.+.....+.+.+..++..-...++.+|+|.+.|+..+|. ..|..++||| |++.+|...+
T Consensus 101 Alp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDE----------PFS~LD~ALR 170 (213)
T COG4136 101 ALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDE----------PFSRLDVALR 170 (213)
T ss_pred ecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCC----------chhHHHHHHH
Confidence 0113455566667888888888889999999999999999998 8999999999 9999998877
Q ss_pred HHHHHHH
Q psy6098 362 RTMLELL 368 (378)
Q Consensus 362 ~~~~~lL 368 (378)
..+-++.
T Consensus 171 ~qfR~wV 177 (213)
T COG4136 171 DQFRQWV 177 (213)
T ss_pred HHHHHHH
Confidence 7776653
No 444
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.28 E-value=9e-12 Score=129.38 Aligned_cols=124 Identities=18% Similarity=0.250 Sum_probs=83.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCc-c---ccc-cc---------------------chh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSE-L---VQK-FI---------------------GEG 289 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~-l---~~~-~~---------------------~~~ 289 (378)
-++.+.+|+.++|.||||+|||||+++|+|.+.+. .+.+++.. + .+. +. +..
T Consensus 471 isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~ 550 (659)
T TIGR00954 471 LSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLS 550 (659)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCC
Confidence 35678899999999999999999999999998654 44443211 0 111 00 011
Q ss_pred HHHHHHHHHHhhhhhhhhccC----chhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 290 SRMVRELFVMASLKKLAFAHH----PLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 290 ~~~v~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
...+.++++.+.+..+..... .......+|+|++|+++++|+ ++|++++||| |++++|+.....
T Consensus 551 ~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDE----------pts~LD~~~~~~ 620 (659)
T TIGR00954 551 DKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDE----------CTSAVSVDVEGY 620 (659)
T ss_pred HHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeC----------CccCCCHHHHHH
Confidence 122333333332222111100 011225799999999999999 8999999999 999999999999
Q ss_pred HHHHHHhc
Q psy6098 364 MLELLNQL 371 (378)
Q Consensus 364 ~~~lL~~l 371 (378)
+.+++.+.
T Consensus 621 l~~~l~~~ 628 (659)
T TIGR00954 621 MYRLCREF 628 (659)
T ss_pred HHHHHHHc
Confidence 99998764
No 445
>PLN03140 ABC transporter G family member; Provisional
Probab=99.28 E-value=4.9e-12 Score=140.43 Aligned_cols=125 Identities=25% Similarity=0.255 Sum_probs=90.9
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce-----EEEeccCcccc-------cccchh-----HHHHHHHHHHhh
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-----FIRVSGSELVQ-------KFIGEG-----SRMVRELFVMAS 301 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-----~i~~~~~~l~~-------~~~~~~-----~~~v~~~~~~a~ 301 (378)
++.+++|+.++|.||||+|||||+|+|+|.+.+. .|.++|.++.. .|+.+. .-++++.+..+.
T Consensus 185 s~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a 264 (1470)
T PLN03140 185 SGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSA 264 (1470)
T ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHH
Confidence 5678899999999999999999999999998652 67777764411 122221 123444443221
Q ss_pred ---------------------------------------------------hhhhhhccC-----chhhhhHhhhhhhhh
Q psy6098 302 ---------------------------------------------------LKKLAFAHH-----PLLFWSLLTILTNTI 325 (378)
Q Consensus 302 ---------------------------------------------------~~~~~~~~~-----~~~~~~~~~~~~~~~ 325 (378)
++.+++.+. ....+..+|+|++||
T Consensus 265 ~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkR 344 (1470)
T PLN03140 265 RCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKR 344 (1470)
T ss_pred HhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCccccee
Confidence 111222221 123456899999999
Q ss_pred hccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 326 VCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 326 ~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
+.+++. ..|+|+|+|| |++|+|+.....+.++|+++..
T Consensus 345 Vsia~aL~~~p~vlllDE----------PTsGLDs~t~~~i~~~Lr~la~ 384 (1470)
T PLN03140 345 VTTGEMIVGPTKTLFMDE----------ISTGLDSSTTYQIVKCLQQIVH 384 (1470)
T ss_pred eeehhhhcCCCcEEEEeC----------CCcCccHHHHHHHHHHHHHHHH
Confidence 999998 8999999999 9999999999999999999854
No 446
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=1.1e-11 Score=109.62 Aligned_cols=119 Identities=23% Similarity=0.262 Sum_probs=86.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccC--ccccc-------------------ccchhHHHH-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGS--ELVQK-------------------FIGEGSRMV- 293 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~--~l~~~-------------------~~~~~~~~v- 293 (378)
-+|.+..|+.++|+|+||+|||||+|.|||.+.|+ .|.++|. .+..- ..|.+.+.+
T Consensus 46 isf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~ 125 (249)
T COG1134 46 ISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEID 125 (249)
T ss_pred ceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHH
Confidence 46789999999999999999999999999999998 7777664 12111 122222222
Q ss_pred ---HHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHH
Q psy6098 294 ---RELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELL 368 (378)
Q Consensus 294 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL 368 (378)
.++.+.+ .+....+..+..+|.||..|++.+-+ ..|.||++|| ..+-+|+..++.=.+.+
T Consensus 126 ~~~~eIieFa-----ELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDE----------vlavGD~~F~~K~~~rl 190 (249)
T COG1134 126 EKVDEIIEFA-----ELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDE----------VLAVGDAAFQEKCLERL 190 (249)
T ss_pred HHHHHHHHHH-----HHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEeh----------hhhcCCHHHHHHHHHHH
Confidence 2222223 23456667788999999999875544 8999999999 66678887776666666
Q ss_pred Hhc
Q psy6098 369 NQL 371 (378)
Q Consensus 369 ~~l 371 (378)
.++
T Consensus 191 ~e~ 193 (249)
T COG1134 191 NEL 193 (249)
T ss_pred HHH
Confidence 666
No 447
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.25 E-value=1.3e-11 Score=137.54 Aligned_cols=126 Identities=17% Similarity=0.204 Sum_probs=90.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEec-cCcccc-------c---ccchh----HHHHHHHHHHh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVS-GSELVQ-------K---FIGEG----SRMVRELFVMA 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~-~~~l~~-------~---~~~~~----~~~v~~~~~~a 300 (378)
-++.+++|+.++|.||||||||||+++|+|.+.+. .|.++ +.++.. . |+.+. ..++++.+...
T Consensus 404 isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g 483 (1466)
T PTZ00265 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYS 483 (1466)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhc
Confidence 35678999999999999999999999999999886 78884 444411 0 11111 12344444331
Q ss_pred -------------------------------------------------------------------------hhhhhhh
Q psy6098 301 -------------------------------------------------------------------------SLKKLAF 307 (378)
Q Consensus 301 -------------------------------------------------------------------------~~~~~~~ 307 (378)
.+..+..
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~ 563 (1466)
T PTZ00265 484 LYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVS 563 (1466)
T ss_pred CCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHH
Confidence 1111100
Q ss_pred c------cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 308 A------HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 308 ~------~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
. .........||+|++||++++|+ .+|+||+||| |++++|+..+..+.+.|.++..
T Consensus 564 ~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDE----------pTSaLD~~se~~i~~~L~~~~~ 627 (1466)
T PTZ00265 564 ALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDE----------ATSSLDNKSEYLVQKTINNLKG 627 (1466)
T ss_pred hCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC----------cccccCHHHHHHHHHHHHHHhh
Confidence 0 00112345799999999999999 8999999999 9999999999999999998853
No 448
>PLN03232 ABC transporter C family member; Provisional
Probab=99.25 E-value=1.1e-11 Score=139.04 Aligned_cols=123 Identities=14% Similarity=0.145 Sum_probs=91.1
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccc-------------------
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIG------------------- 287 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~------------------- 287 (378)
++.+++|+.++|+||+|+|||||+++|.+.+.+. .|.++|.++.+- ++.
T Consensus 1256 sl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~ 1335 (1495)
T PLN03232 1256 SFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSE 1335 (1495)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCC
Confidence 3456789999999999999999999999999886 899998766210 111
Q ss_pred hhHHHHHHHHHHhhhhhhhhcc------CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 288 EGSRMVRELFVMASLKKLAFAH------HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 288 ~~~~~v~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
.+...+.++++.+.+..+.... .-...-..+|+|++|++++||+ .+|+||+||| ||+++|++
T Consensus 1336 ~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDE----------ATSaLD~~ 1405 (1495)
T PLN03232 1336 HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDE----------ATASVDVR 1405 (1495)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC----------CcccCCHH
Confidence 1223444555555443332211 1111223699999999999999 8999999999 99999999
Q ss_pred HHHHHHHHHHhc
Q psy6098 360 VQRTMLELLNQL 371 (378)
Q Consensus 360 ~~~~~~~lL~~l 371 (378)
+.+.+.+.|++.
T Consensus 1406 Te~~Iq~~L~~~ 1417 (1495)
T PLN03232 1406 TDSLIQRTIREE 1417 (1495)
T ss_pred HHHHHHHHHHHH
Confidence 999999988865
No 449
>PLN03130 ABC transporter C family member; Provisional
Probab=99.25 E-value=1.4e-11 Score=138.52 Aligned_cols=123 Identities=16% Similarity=0.186 Sum_probs=91.9
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------cc-------------------c
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FI-------------------G 287 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~-------------------~ 287 (378)
++.+++|+.++|+|++|+|||||+++|.+++.+. .|.++|.++.+- ++ .
T Consensus 1259 s~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~ 1338 (1622)
T PLN03130 1259 SFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNE 1338 (1622)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCC
Confidence 4567899999999999999999999999999876 899998766210 01 1
Q ss_pred hhHHHHHHHHHHhhhhhhhhcc--Cchh----hhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 288 EGSRMVRELFVMASLKKLAFAH--HPLL----FWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 288 ~~~~~v~~~~~~a~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
.+...+.++++.+.+....... -.+. .-..+|+|++|++++||+ .+|+||+||| +|+++|.+
T Consensus 1339 ~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDE----------ATSaLD~~ 1408 (1622)
T PLN03130 1339 HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDE----------ATAAVDVR 1408 (1622)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEEC----------CCCCCCHH
Confidence 1223445555555443332211 1111 223699999999999999 8999999999 99999999
Q ss_pred HHHHHHHHHHhc
Q psy6098 360 VQRTMLELLNQL 371 (378)
Q Consensus 360 ~~~~~~~lL~~l 371 (378)
+...+.+.|++.
T Consensus 1409 Te~~Iq~~I~~~ 1420 (1622)
T PLN03130 1409 TDALIQKTIREE 1420 (1622)
T ss_pred HHHHHHHHHHHH
Confidence 999999988865
No 450
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.24 E-value=2.3e-11 Score=109.43 Aligned_cols=70 Identities=29% Similarity=0.416 Sum_probs=57.6
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcc
Q psy6098 204 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 281 (378)
Q Consensus 204 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l 281 (378)
.+++.+|++.+|++++|++++-++....... ..-.+++|+||||.||||||+.||..++.+.-..+|+-+
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l 88 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL 88 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc
Confidence 4678899999999999999988877643332 334589999999999999999999999998777777654
No 451
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.22 E-value=3.1e-11 Score=109.09 Aligned_cols=57 Identities=12% Similarity=0.035 Sum_probs=48.8
Q ss_pred CchhhhhHhhhhhhhhhccccc--CCC--eEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 310 HPLLFWSLLTILTNTIVCNFRE--HAP--SIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~--~~p--~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
.....+..+|+|++|++.++++ ..| .+|++|| |++++|+..+..+.++|.++...+.
T Consensus 130 ~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDE----------Pt~gLD~~~~~~l~~~l~~~~~~g~ 190 (226)
T cd03270 130 TLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDE----------PSIGLHPRDNDRLIETLKRLRDLGN 190 (226)
T ss_pred cccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHHhCCC
Confidence 3566788999999999999998 455 6999999 9999999999999999998764443
No 452
>KOG0055|consensus
Probab=99.22 E-value=2.5e-11 Score=128.42 Aligned_cols=123 Identities=21% Similarity=0.267 Sum_probs=92.5
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------cc-----------------c---
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FI-----------------G--- 287 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~-----------------~--- 287 (378)
+.+.+|+.++|+||+||||||++..|-..+.++ .|.+++.++..- .+ |
T Consensus 1011 l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~ 1090 (1228)
T KOG0055|consen 1011 LSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEE 1090 (1228)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCC
Confidence 457789999999999999999999999999887 999999877221 01 1
Q ss_pred hhHHHHHHHHHHhhhhhhhhcc------CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 288 EGSRMVRELFVMASLKKLAFAH------HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 288 ~~~~~v~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
-++..+.+..+.|....+.... .-..+=..||+|++||+++||+ .+|.||+||| .||++|.+
T Consensus 1091 vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDE----------ATSALDse 1160 (1228)
T KOG0055|consen 1091 VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDE----------ATSALDSE 1160 (1228)
T ss_pred CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeec----------cchhhhhh
Confidence 1333444555555444443221 1111233699999999999999 9999999999 89999999
Q ss_pred HHHHHHHHHHhcc
Q psy6098 360 VQRTMLELLNQLD 372 (378)
Q Consensus 360 ~~~~~~~lL~~l~ 372 (378)
+.+.+-+-|....
T Consensus 1161 SErvVQeALd~a~ 1173 (1228)
T KOG0055|consen 1161 SERVVQEALDRAM 1173 (1228)
T ss_pred hHHHHHHHHHHhh
Confidence 9999998887654
No 453
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.22 E-value=2.4e-11 Score=116.61 Aligned_cols=89 Identities=26% Similarity=0.506 Sum_probs=66.7
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhhhcCC-CCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccc-cccc-h
Q psy6098 212 MVGGLDNQIKEIKEVIELPVKHPELFDALGI-AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIG-E 288 (378)
Q Consensus 212 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~-~~~~-~ 288 (378)
.+.|++++++.+..++...+........... ..+.+++|+||||||||+++++||..++.+++.++...+.+ .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 4889999999998887653332211111111 12468999999999999999999999999999999988875 6888 4
Q ss_pred hHHHHHHHHHHh
Q psy6098 289 GSRMVRELFVMA 300 (378)
Q Consensus 289 ~~~~v~~~~~~a 300 (378)
.+..++++|..|
T Consensus 96 ~e~~ir~L~~~A 107 (443)
T PRK05201 96 VESIIRDLVEIA 107 (443)
T ss_pred HHHHHHHHHHHH
Confidence 456667776666
No 454
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.21 E-value=2.5e-11 Score=136.41 Aligned_cols=123 Identities=20% Similarity=0.213 Sum_probs=90.8
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------cc-------------------c
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FI-------------------G 287 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~-------------------~ 287 (378)
++.+++|+.++++|++|+|||||+++|.+++.+. .|.++|.++.+- ++ .
T Consensus 1306 s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~ 1385 (1522)
T TIGR00957 1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQ 1385 (1522)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccC
Confidence 4567899999999999999999999999999876 899998776211 01 1
Q ss_pred hhHHHHHHHHHHhhhhhhhhcc--Cchhhh----hHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 288 EGSRMVRELFVMASLKKLAFAH--HPLLFW----SLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 288 ~~~~~v~~~~~~a~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
.+...+.++++.+.+..+.... -.+..+ ..+|+|++|++|+||+ .+|+||+||| ||+++|.+
T Consensus 1386 ~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDE----------aTSalD~~ 1455 (1522)
T TIGR00957 1386 YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDE----------ATAAVDLE 1455 (1522)
T ss_pred CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC----------CcccCCHH
Confidence 1223344444444433322111 112222 4699999999999999 8999999999 99999999
Q ss_pred HHHHHHHHHHhc
Q psy6098 360 VQRTMLELLNQL 371 (378)
Q Consensus 360 ~~~~~~~lL~~l 371 (378)
+...+.+.|++.
T Consensus 1456 Te~~Iq~~l~~~ 1467 (1522)
T TIGR00957 1456 TDNLIQSTIRTQ 1467 (1522)
T ss_pred HHHHHHHHHHHH
Confidence 999999888764
No 455
>KOG0056|consensus
Probab=99.21 E-value=3.1e-11 Score=115.60 Aligned_cols=129 Identities=22% Similarity=0.239 Sum_probs=93.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc---------------c---------------c
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ---------------K---------------F 285 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~---------------~---------------~ 285 (378)
.+|.+.+|+.++|.||+|+||||++|.+-.....+ .|.++|.++.. . -
T Consensus 557 isF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak 636 (790)
T KOG0056|consen 557 ISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAK 636 (790)
T ss_pred ceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecC
Confidence 46788899999999999999999999999988765 89999987721 1 0
Q ss_pred cchhHHHHHHHHHHhhhhhhh--hccCchhhh----hHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 286 IGEGSRMVRELFVMASLKKLA--FAHHPLLFW----SLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 286 ~~~~~~~v~~~~~~a~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
++.+...+.+.-+.|.+..-. +.......+ -.+|+|++||+++||. .+|++|+||| .++++|
T Consensus 637 ~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDE----------ATSALD 706 (790)
T KOG0056|consen 637 PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDE----------ATSALD 706 (790)
T ss_pred CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcc----------hhhhcC
Confidence 122333454444444322211 111111112 2599999999999999 8999999999 788999
Q ss_pred hHHHHHHHHHHHhccCCCC
Q psy6098 358 SEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~~~~ 376 (378)
....|.+-.-|.++-....
T Consensus 707 T~tER~IQaaL~rlca~RT 725 (790)
T KOG0056|consen 707 TNTERAIQAALARLCANRT 725 (790)
T ss_pred CccHHHHHHHHHHHhcCCc
Confidence 9889999888887765443
No 456
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.21 E-value=6.6e-11 Score=124.27 Aligned_cols=106 Identities=22% Similarity=0.379 Sum_probs=85.4
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhc----------Cc
Q psy6098 202 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------EC 271 (378)
Q Consensus 202 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~----------~~ 271 (378)
.+...+..++++.|.++.+..+.+.+.. ....+++|+||||||||++++.+|..+ +.
T Consensus 173 ~~~~r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~ 239 (731)
T TIGR02639 173 TEKAKNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNA 239 (731)
T ss_pred HHHHhcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCC
Confidence 3445667888999999999987766533 123468999999999999999999876 44
Q ss_pred eEEEeccCccc--ccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCC
Q psy6098 272 TFIRVSGSELV--QKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSR 349 (378)
Q Consensus 272 ~~i~~~~~~l~--~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r 349 (378)
.++.++...+. .+|.|+.+..++++|+.+ +.+.|.||||||||.|++.+
T Consensus 240 ~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~-----------------------------~~~~~~ILfiDEih~l~~~g 290 (731)
T TIGR02639 240 KIYSLDMGSLLAGTKYRGDFEERLKAVVSEI-----------------------------EKEPNAILFIDEIHTIVGAG 290 (731)
T ss_pred eEEEecHHHHhhhccccchHHHHHHHHHHHH-----------------------------hccCCeEEEEecHHHHhccC
Confidence 57778877776 468899999999999887 44578999999999999875
No 457
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.21 E-value=4.8e-11 Score=112.23 Aligned_cols=102 Identities=29% Similarity=0.531 Sum_probs=74.9
Q ss_pred ccccCCCCCcccccCcHHHHHH---HHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEec
Q psy6098 201 MVEKVPDSTYEMVGGLDNQIKE---IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 277 (378)
Q Consensus 201 ~~~~~~~~~~~~i~g~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~ 277 (378)
....+++.++++++||++..-+ |.+.+.. ..-..+.|+|||||||||++++||+..+..|..++
T Consensus 14 LA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s 80 (436)
T COG2256 14 LAERLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALS 80 (436)
T ss_pred hHHHhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEec
Confidence 4456778899999999988633 3333332 12236889999999999999999999999999998
Q ss_pred cCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccC
Q psy6098 278 GSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGS 347 (378)
Q Consensus 278 ~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~ 347 (378)
. +..+.+.++++++.|.... ......|||+|||..+.+
T Consensus 81 A-------v~~gvkdlr~i~e~a~~~~-------------------------~~gr~tiLflDEIHRfnK 118 (436)
T COG2256 81 A-------VTSGVKDLREIIEEARKNR-------------------------LLGRRTILFLDEIHRFNK 118 (436)
T ss_pred c-------ccccHHHHHHHHHHHHHHH-------------------------hcCCceEEEEehhhhcCh
Confidence 6 3345677888888883221 113457999999987654
No 458
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.20 E-value=2e-11 Score=135.74 Aligned_cols=126 Identities=18% Similarity=0.155 Sum_probs=90.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC----c--eEEEeccCcccc---------cccchh-----HHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE----C--TFIRVSGSELVQ---------KFIGEG-----SRMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~----~--~~i~~~~~~l~~---------~~~~~~-----~~~v~~~~ 297 (378)
-++.+.+|+.++|.||||+|||||+|+|+|... + ..|.++|.++.. .|+.+. ..++++.+
T Consensus 80 vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l 159 (1394)
T TIGR00956 80 MDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETL 159 (1394)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHH
Confidence 356788999999999999999999999999862 2 278888754411 122111 11333433
Q ss_pred HHh-------------------------hhhhhhhccCchh-----hhhHhhhhhhhhhccccc--CCCeEEEEecCccc
Q psy6098 298 VMA-------------------------SLKKLAFAHHPLL-----FWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSI 345 (378)
Q Consensus 298 ~~a-------------------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~ 345 (378)
..+ .++.+++.+.... .+..+|+|++||+.++++ ..|+|+|+||
T Consensus 160 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDE---- 235 (1394)
T TIGR00956 160 DFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDN---- 235 (1394)
T ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeC----
Confidence 321 1222223222222 345799999999999998 8999999999
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 346 GSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 346 ~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++|+|+..+..+.++|+++..
T Consensus 236 ------PTsgLD~~~~~~i~~~L~~la~ 257 (1394)
T TIGR00956 236 ------ATRGLDSATALEFIRALKTSAN 257 (1394)
T ss_pred ------CCCCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999864
No 459
>PTZ00243 ABC transporter; Provisional
Probab=99.20 E-value=3.1e-11 Score=135.49 Aligned_cols=123 Identities=22% Similarity=0.248 Sum_probs=90.2
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------cc-------------------c
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FI-------------------G 287 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~-------------------~ 287 (378)
+|.+++|+.++|+|++|+|||||+++|.+++.+. .|.++|.++..- ++ .
T Consensus 1330 sf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~ 1409 (1560)
T PTZ00243 1330 SFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLE 1409 (1560)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccC
Confidence 3567799999999999999999999999999876 899998776211 11 1
Q ss_pred hhHHHHHHHHHHhhhhhhhhcc--Cchh----hhhHhhhhhhhhhccccc--C-CCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 288 EGSRMVRELFVMASLKKLAFAH--HPLL----FWSLLTILTNTIVCNFRE--H-APSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 288 ~~~~~v~~~~~~a~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~--~-~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
.+...+.++++.+.+....... -.+. .-..||+|++|++++||+ . +|+||+||| ||+++|+
T Consensus 1410 ~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDE----------ATSaLD~ 1479 (1560)
T PTZ00243 1410 ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDE----------ATANIDP 1479 (1560)
T ss_pred CCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeC----------CCccCCH
Confidence 1223444555554443322111 1111 124699999999999999 5 489999999 9999999
Q ss_pred HHHHHHHHHHHhc
Q psy6098 359 EVQRTMLELLNQL 371 (378)
Q Consensus 359 ~~~~~~~~lL~~l 371 (378)
+..+.+.+.|.+.
T Consensus 1480 ~te~~Iq~~L~~~ 1492 (1560)
T PTZ00243 1480 ALDRQIQATVMSA 1492 (1560)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888764
No 460
>PLN03073 ABC transporter F family; Provisional
Probab=99.19 E-value=4.9e-11 Score=124.27 Aligned_cols=50 Identities=12% Similarity=0.007 Sum_probs=46.1
Q ss_pred hhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhc
Q psy6098 312 LLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 371 (378)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l 371 (378)
...+..||+|++|++.++++ ..|.||+||| |++++|+.....+.++|+.+
T Consensus 339 ~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDE----------Pt~~LD~~~~~~l~~~L~~~ 390 (718)
T PLN03073 339 VKATKTFSGGWRMRIALARALFIEPDLLLLDE----------PTNHLDLHAVLWLETYLLKW 390 (718)
T ss_pred hCchhhCCHHHHHHHHHHHHHhcCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHc
Confidence 44678999999999999998 8999999999 99999999999999999876
No 461
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.17 E-value=1.2e-10 Score=97.62 Aligned_cols=128 Identities=20% Similarity=0.126 Sum_probs=95.0
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce-EEEeccCccccc----------cc------------------chh
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-FIRVSGSELVQK----------FI------------------GEG 289 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-~i~~~~~~l~~~----------~~------------------~~~ 289 (378)
+..+..|+.+-++||||||||||+..+||++... .|.+.|.++..- |. ..+
T Consensus 19 S~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP 98 (248)
T COG4138 19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQP 98 (248)
T ss_pred ccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCc
Confidence 3457789999999999999999999999998765 899988776211 10 112
Q ss_pred HHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhccccc---------CCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 290 SRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE---------HAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 290 ~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
.+++...+.+. -..+.+.++.......+|+|+=||+..+.. ....++++|| |.+++|...
T Consensus 99 ~~~~a~~i~~i-~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDE----------P~~~LDvAQ 167 (248)
T COG4138 99 DKTRTELLNDV-AGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDE----------PMNSLDVAQ 167 (248)
T ss_pred hHHHHHHHHHH-HhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecC----------CCcchhHHH
Confidence 22222222221 234456677777888999999999976664 3456999999 999999999
Q ss_pred HHHHHHHHHhccCCCCC
Q psy6098 361 QRTMLELLNQLDGFEAT 377 (378)
Q Consensus 361 ~~~~~~lL~~l~~~~~~ 377 (378)
+..+..+|.+|-+.|.+
T Consensus 168 ~~aLdrll~~~c~~G~~ 184 (248)
T COG4138 168 QSALDRLLSALCQQGLA 184 (248)
T ss_pred HHHHHHHHHHHHhCCcE
Confidence 99999999998877654
No 462
>KOG0927|consensus
Probab=99.16 E-value=3.8e-11 Score=116.43 Aligned_cols=125 Identities=21% Similarity=0.263 Sum_probs=90.0
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEecc--Cccccccc-------c---hhHHHHHHH--------HH
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG--SELVQKFI-------G---EGSRMVREL--------FV 298 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~--~~l~~~~~-------~---~~~~~v~~~--------~~ 298 (378)
+|++..+..+.++||||||||||+|.+.+.+.+..-.+.. +.....|- + .+...+... ..
T Consensus 410 ~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~ 489 (614)
T KOG0927|consen 410 NFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEM 489 (614)
T ss_pred hcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHH
Confidence 5789999999999999999999999999999886322222 11111100 0 000111111 11
Q ss_pred Hhhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 299 MASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 299 ~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
...+.+.+++ ......+..||.|++.++.+++. ..|.+|+||| ||+++|-.....+-+.|++.+|
T Consensus 490 r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDE----------PtnhLDi~tid~laeaiNe~~G 557 (614)
T KOG0927|consen 490 RSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDE----------PTNHLDIETIDALAEAINEFPG 557 (614)
T ss_pred HHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecC----------CCcCCCchhHHHHHHHHhccCC
Confidence 2234555565 44556778999999999998887 8999999999 9999999999999999998887
No 463
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.16 E-value=6.9e-11 Score=132.53 Aligned_cols=122 Identities=18% Similarity=0.203 Sum_probs=88.3
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhhcCce-EEEeccCccccc----------ccc-------------------hh
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-FIRVSGSELVQK----------FIG-------------------EG 289 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-~i~~~~~~l~~~----------~~~-------------------~~ 289 (378)
+.+++|+.++|+|++|+|||||+++|++++... .|.++|.++..- ++. .+
T Consensus 1240 ~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~t 1319 (1490)
T TIGR01271 1240 FSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWS 1319 (1490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCC
Confidence 567789999999999999999999999998633 888988766211 111 12
Q ss_pred HHHHHHHHHHhhhhhhhhcc--Cchhhh----hHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHH
Q psy6098 290 SRMVRELFVMASLKKLAFAH--HPLLFW----SLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 361 (378)
Q Consensus 290 ~~~v~~~~~~a~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~ 361 (378)
...+.++++.+.+....... -....+ ..+|+|++|++|+||+ .+|+||+||| ||+++|....
T Consensus 1320 deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDE----------aTS~lD~~Te 1389 (1490)
T TIGR01271 1320 DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDE----------PSAHLDPVTL 1389 (1490)
T ss_pred HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeC----------CcccCCHHHH
Confidence 23344444444333322111 111112 2599999999999999 8999999999 9999999999
Q ss_pred HHHHHHHHhc
Q psy6098 362 RTMLELLNQL 371 (378)
Q Consensus 362 ~~~~~lL~~l 371 (378)
..+.+.|++.
T Consensus 1390 ~~I~~~L~~~ 1399 (1490)
T TIGR01271 1390 QIIRKTLKQS 1399 (1490)
T ss_pred HHHHHHHHHH
Confidence 9999888865
No 464
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.15 E-value=1.1e-10 Score=106.64 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=45.9
Q ss_pred hhhhhHhhhhhhhhhcccccC------CCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 312 LLFWSLLTILTNTIVCNFREH------APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~------~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
......+|+|++|++.++++- +|++++||| |++++|+...+.+.+.|.++..
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDE----------p~~~ld~~~~~~~~~~l~~~~~ 210 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDE----------IDAALDAQYRTAVANMIKELSD 210 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEEC----------CccCCCHHHHHHHHHHHHHHhC
Confidence 456778999999999999873 589999999 9999999999999999988743
No 465
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.15 E-value=5.3e-11 Score=114.16 Aligned_cols=53 Identities=30% Similarity=0.399 Sum_probs=49.9
Q ss_pred CCCCCCCCChhHHHHHHHhhccCceEEEeccccccc-cccc-hhHHHHHHHHHHH
Q psy6098 4 PLHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQ-KFIG-EGSRMVRELFVMA 56 (378)
Q Consensus 4 ~~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~-~~~G-ese~~~~~~f~~a 56 (378)
=+++||||||||++||++|..++++|+.++.+++.. +|+| +.|+.+|.+|+.|
T Consensus 50 ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 50 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAA 104 (441)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHH
Confidence 368999999999999999999999999999999984 8999 7999999999998
No 466
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.14 E-value=5.2e-11 Score=106.66 Aligned_cols=118 Identities=18% Similarity=0.115 Sum_probs=76.9
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhc-Cce--EEEec-cCcc----------------------cccccchhHHHHHHHHH
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHT-ECT--FIRVS-GSEL----------------------VQKFIGEGSRMVRELFV 298 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~-~~~--~i~~~-~~~l----------------------~~~~~~~~~~~v~~~~~ 298 (378)
++.++|+||||+||||++++|+..+ +.. ..... ..+. ...+.+.+.....+..
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~- 106 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIV- 106 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHHHhh-
Confidence 6689999999999999999999644 222 11110 0000 0012223333222221
Q ss_pred HhhhhhhhhccCchhhhhHhhhhhhhhhcccccC------------CCeEEEEecCccccCCCCCCCCCCChHHHHHHHH
Q psy6098 299 MASLKKLAFAHHPLLFWSLLTILTNTIVCNFREH------------APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLE 366 (378)
Q Consensus 299 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~ 366 (378)
.+............+..+|.|++|++.++++- +|+++++|| |++++|+.....+.+
T Consensus 107 --~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDE----------p~~~lD~~~~~~~~~ 174 (213)
T cd03279 107 --LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDE----------GFGTLDPEALEAVAT 174 (213)
T ss_pred --hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeC----------CcccCCHHHHHHHHH
Confidence 11112223334556778999999999988862 578999999 999999999999999
Q ss_pred HHHhccCCC
Q psy6098 367 LLNQLDGFE 375 (378)
Q Consensus 367 lL~~l~~~~ 375 (378)
+|.++...+
T Consensus 175 ~l~~~~~~~ 183 (213)
T cd03279 175 ALELIRTEN 183 (213)
T ss_pred HHHHHHhCC
Confidence 999886544
No 467
>KOG0742|consensus
Probab=99.13 E-value=2.3e-10 Score=107.45 Aligned_cols=128 Identities=23% Similarity=0.339 Sum_probs=92.3
Q ss_pred CCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccccc
Q psy6098 208 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIG 287 (378)
Q Consensus 208 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~~ 287 (378)
.++++++-.....+.|++..... .. ....-.+-++++||||||||||+++|-||...+.++-.+.|.++... -.
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aT-aN----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~ 425 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIAT-AN----TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GA 425 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHh-cc----cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-ch
Confidence 44667777777777776654431 11 01111233579999999999999999999999999999989887543 12
Q ss_pred hhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHH
Q psy6098 288 EGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL 367 (378)
Q Consensus 288 ~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~l 367 (378)
+....+.++|+-+. .....-+|||||+|++...| ..+......+..++.+
T Consensus 426 qaVTkiH~lFDWak----------------------------kS~rGLllFIDEADAFLceR--nktymSEaqRsaLNAl 475 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAK----------------------------KSRRGLLLFIDEADAFLCER--NKTYMSEAQRSALNAL 475 (630)
T ss_pred HHHHHHHHHHHHHh----------------------------hcccceEEEehhhHHHHHHh--chhhhcHHHHHHHHHH
Confidence 34456778888773 23567799999999999999 5567777777888888
Q ss_pred HHhc
Q psy6098 368 LNQL 371 (378)
Q Consensus 368 L~~l 371 (378)
|-.-
T Consensus 476 LfRT 479 (630)
T KOG0742|consen 476 LFRT 479 (630)
T ss_pred HHHh
Confidence 7653
No 468
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.12 E-value=7.7e-11 Score=104.49 Aligned_cols=114 Identities=17% Similarity=0.214 Sum_probs=71.6
Q ss_pred hhcCCCCCc-ceeEeCCCCCchHHHHHHHhhhc-----CceEEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCc
Q psy6098 238 DALGIAQPK-GVLLYGPPGTGKTLLARAVAHHT-----ECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHP 311 (378)
Q Consensus 238 ~~~~~~~~~-~~ll~Gp~G~GKTtl~~~ia~~~-----~~~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~ 311 (378)
.++.+.+++ .++|.||||+|||||+|+|+... +. ++-....... .|. .+. ...+......
T Consensus 20 ~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~-~vp~~~~~~~-~~~-------~~~-----~~~lg~~~~l 85 (200)
T cd03280 20 LDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGL-PIPAAEGSSL-PVF-------ENI-----FADIGDEQSI 85 (200)
T ss_pred ceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCC-CccccccccC-cCc-------cEE-----EEecCchhhh
Confidence 456777884 69999999999999999998211 10 1111100000 000 000 0111112223
Q ss_pred hhhhhHhhhhhhhhhccccc-CCCeEEEEecCccccCCCCCCCCCCChHHHHHHH-HHHHhccCCC
Q psy6098 312 LLFWSLLTILTNTIVCNFRE-HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML-ELLNQLDGFE 375 (378)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~-~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~-~lL~~l~~~~ 375 (378)
...+..+|.+++++..+++. ..|+++++|| |++++|+.....+. .+++.+...+
T Consensus 86 ~~~~s~fs~g~~~~~~i~~~~~~p~llllDE----------p~~glD~~~~~~i~~~~l~~l~~~~ 141 (200)
T cd03280 86 EQSLSTFSSHMKNIARILQHADPDSLVLLDE----------LGSGTDPVEGAALAIAILEELLERG 141 (200)
T ss_pred hcCcchHHHHHHHHHHHHHhCCCCcEEEEcC----------CCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 34456788899888887765 7899999999 99999998887775 5677765443
No 469
>KOG0060|consensus
Probab=99.09 E-value=3e-10 Score=111.04 Aligned_cols=124 Identities=20% Similarity=0.300 Sum_probs=87.7
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEe--cc--Ccc---ccc-------------cc---------c
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRV--SG--SEL---VQK-------------FI---------G 287 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~--~~--~~l---~~~-------------~~---------~ 287 (378)
++.+..|..++++||||||||+|+|.++|++... .+.. ++ +++ +++ |+ +
T Consensus 455 s~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~ 534 (659)
T KOG0060|consen 455 SLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKS 534 (659)
T ss_pred eeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccccC
Confidence 5678889999999999999999999999998743 2222 22 222 111 11 1
Q ss_pred hhHHHHHHHHHHhhhhhhhh-----ccCchhhh-hHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 288 EGSRMVRELFVMASLKKLAF-----AHHPLLFW-SLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 288 ~~~~~v~~~~~~a~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
.+...+.+.++.+.+..+.. .......| +.||.|++||++.||- ++|.+-|||| .|++.+.+
T Consensus 535 ~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE----------~TSAv~~d 604 (659)
T KOG0060|consen 535 ASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDE----------CTSAVTED 604 (659)
T ss_pred CCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeec----------hhhhccHH
Confidence 12234555666555444321 12223344 3799999999999998 9999999999 89999999
Q ss_pred HHHHHHHHHHhcc
Q psy6098 360 VQRTMLELLNQLD 372 (378)
Q Consensus 360 ~~~~~~~lL~~l~ 372 (378)
....+.+.++++.
T Consensus 605 vE~~~Yr~~r~~g 617 (659)
T KOG0060|consen 605 VEGALYRKCREMG 617 (659)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999988763
No 470
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.08 E-value=5.3e-11 Score=104.87 Aligned_cols=62 Identities=23% Similarity=0.232 Sum_probs=41.8
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIK 77 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~ 77 (378)
+|.||||||||+||+.+|++++.+|..++++.+-. ...+..++... ..+.|||||||+.+-+
T Consensus 54 lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k------~~dl~~il~~l-----~~~~ILFIDEIHRlnk 115 (233)
T PF05496_consen 54 LFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK------AGDLAAILTNL-----KEGDILFIDEIHRLNK 115 (233)
T ss_dssp EEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S------CHHHHHHHHT-------TT-EEEECTCCC--H
T ss_pred EEECCCccchhHHHHHHHhccCCCeEeccchhhhh------HHHHHHHHHhc-----CCCcEEEEechhhccH
Confidence 68899999999999999999999999999876432 12233333332 2356999999998854
No 471
>KOG0065|consensus
Probab=99.08 E-value=1.9e-10 Score=122.04 Aligned_cols=126 Identities=25% Similarity=0.260 Sum_probs=90.4
Q ss_pred CCCCcceeEeCCCCCchHHHHHHHhhhcCce----EEEeccCccccc-------ccc-----hhHHHHHHHHHHhh----
Q psy6098 242 IAQPKGVLLYGPPGTGKTLLARAVAHHTECT----FIRVSGSELVQK-------FIG-----EGSRMVRELFVMAS---- 301 (378)
Q Consensus 242 ~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~----~i~~~~~~l~~~-------~~~-----~~~~~v~~~~~~a~---- 301 (378)
+.||.-.+|.|++|+|||||++.|||..... .|.++|....+. |+. ..+-+|+|.+....
T Consensus 814 ~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRl 893 (1391)
T KOG0065|consen 814 FKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRL 893 (1391)
T ss_pred ecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcC
Confidence 5577789999999999999999999985543 677777655311 221 12234555444332
Q ss_pred ----------------hhhhhhccCchhhh----hHhhhhhhhhhccccc--CCC-eEEEEecCccccCCCCCCCCCCCh
Q psy6098 302 ----------------LKKLAFAHHPLLFW----SLLTILTNTIVCNFRE--HAP-SIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 302 ----------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~p-~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
++-+++.......+ ..||..+++|+.++-+ .+| .|||||| ||+|+|.
T Consensus 894 p~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDE----------PTSGLDs 963 (1391)
T KOG0065|consen 894 PKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDE----------PTSGLDS 963 (1391)
T ss_pred CCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecC----------CCCCccH
Confidence 22222332233322 4588888999988887 788 9999999 9999999
Q ss_pred HHHHHHHHHHHhccCCCCC
Q psy6098 359 EVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~~~~ 377 (378)
.+...++++++.+-..|.|
T Consensus 964 qaA~~i~~~lrkla~tGqt 982 (1391)
T KOG0065|consen 964 QAAAIVMRFLRKLADTGQT 982 (1391)
T ss_pred HHHHHHHHHHHHHHhcCCe
Confidence 9999999999999888875
No 472
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.08 E-value=1.2e-10 Score=109.48 Aligned_cols=67 Identities=28% Similarity=0.257 Sum_probs=55.1
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCC-CCCceEEEeehhhhhhc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGS-SRGTEFFTMDVDEAIKS 78 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~-~~~~ilf~DEid~~~~~ 78 (378)
.|-||||||||+||+.+|...++.|..+|+-.- +-+.+|++|+.|++..- .+.+|||+|||..+-+.
T Consensus 52 Il~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 52 ILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred EEECCCCCCHHHHHHHHHHhhCCceEEeccccc-------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 578999999999999999999999999887432 23589999999976443 34579999999887654
No 473
>PRK04195 replication factor C large subunit; Provisional
Probab=99.06 E-value=1.2e-09 Score=109.63 Aligned_cols=72 Identities=39% Similarity=0.528 Sum_probs=60.2
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCc
Q psy6098 201 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 280 (378)
Q Consensus 201 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~ 280 (378)
+.+.+++.++++++|++++++++..++..... + .++..++|+||||+||||+++++|..++..++.++.++
T Consensus 4 W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 4 WVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred chhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 55678899999999999999999998765221 1 22568999999999999999999999998899988775
Q ss_pred c
Q psy6098 281 L 281 (378)
Q Consensus 281 l 281 (378)
.
T Consensus 75 ~ 75 (482)
T PRK04195 75 Q 75 (482)
T ss_pred c
Confidence 4
No 474
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.7e-10 Score=106.72 Aligned_cols=128 Identities=17% Similarity=0.187 Sum_probs=92.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc---------------c-------------c--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ---------------K-------------F-- 285 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~---------------~-------------~-- 285 (378)
.+|.+++|+.++++||+|+||||+++.+-..+.++ .|.+++.++-. . |
T Consensus 282 isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr 361 (497)
T COG5265 282 ISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGR 361 (497)
T ss_pred ccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccC
Confidence 57789999999999999999999999999999887 89999987711 1 0
Q ss_pred cchhHHHHHHHHHHhhhhhhhhc------cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 286 IGEGSRMVRELFVMASLKKLAFA------HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 286 ~~~~~~~v~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
...+...+....+.|.+..+-.. ..-..+.-.+|+|++||++++|. ..|+|++||| .++++|
T Consensus 362 ~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~de----------atsald 431 (497)
T COG5265 362 PDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDE----------ATSALD 431 (497)
T ss_pred ccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEeh----------hhhHhh
Confidence 01122233333333332222211 11111233699999999999999 8999999999 888999
Q ss_pred hHHHHHHHHHHHhccCCC
Q psy6098 358 SEVQRTMLELLNQLDGFE 375 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~~~ 375 (378)
....+.+..-|+...+-.
T Consensus 432 t~te~~iq~~l~~~~~~r 449 (497)
T COG5265 432 THTEQAIQAALREVSAGR 449 (497)
T ss_pred hhHHHHHHHHHHHHhCCC
Confidence 999999888887766443
No 475
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.06 E-value=4.7e-10 Score=102.96 Aligned_cols=57 Identities=18% Similarity=0.078 Sum_probs=48.8
Q ss_pred chhhhhHhhhhhhhhhccccc--C---CCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 311 PLLFWSLLTILTNTIVCNFRE--H---APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~--~---~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
....+..+|+|++|++.++++ . .|.+++||| |++++|+.....+.++|.++...+.|
T Consensus 163 l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDE----------PtsgLD~~~~~~l~~~L~~l~~~g~t 224 (261)
T cd03271 163 LGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDE----------PTTGLHFHDVKKLLEVLQRLVDKGNT 224 (261)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEEC----------CCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 456677999999999999987 3 379999999 99999999999999999988655543
No 476
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.06 E-value=2.1e-10 Score=128.73 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=83.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccC-cc-ccc-ccchhHHHHHHHHH--------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGS-EL-VQK-FIGEGSRMVRELFV-------------- 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~-~l-~~~-~~~~~~~~v~~~~~-------------- 298 (378)
-++.+++|+.+++.||+|+|||||+++|+|++.+. .|.+++. .+ .+. |+- ..++++++.
T Consensus 445 i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~--~~Ti~eNI~~g~~~~~~~~~~~~ 522 (1490)
T TIGR01271 445 ISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIM--PGTIKDNIIFGLSYDEYRYTSVI 522 (1490)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccC--CccHHHHHHhccccchHHHHHHH
Confidence 35678899999999999999999999999998875 6666652 11 111 110 012222221
Q ss_pred -Hhhhhh-hhhcc-----CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHH-HH
Q psy6098 299 -MASLKK-LAFAH-----HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLE-LL 368 (378)
Q Consensus 299 -~a~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~-lL 368 (378)
...+.. +..-+ ........||+|++||++++|+ ..|+|++||| |++++|+.....+.+ ++
T Consensus 523 ~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDe----------p~saLD~~~~~~i~~~~l 592 (1490)
T TIGR01271 523 KACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDS----------PFTHLDVVTEKEIFESCL 592 (1490)
T ss_pred HHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeC----------CcccCCHHHHHHHHHHHH
Confidence 111111 11101 1122345799999999999999 8999999999 999999999988886 45
Q ss_pred Hhc
Q psy6098 369 NQL 371 (378)
Q Consensus 369 ~~l 371 (378)
..+
T Consensus 593 ~~~ 595 (1490)
T TIGR01271 593 CKL 595 (1490)
T ss_pred HHH
Confidence 544
No 477
>KOG0062|consensus
Probab=99.05 E-value=3.6e-09 Score=102.32 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=81.4
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccC----cccc------------------cccchhHHHHHHH
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGS----ELVQ------------------KFIGEGSRMVREL 296 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~----~l~~------------------~~~~~~~~~v~~~ 296 (378)
++..-..++..|+||.||||+.|.+.+.+.+. .+.+.+. ...+ .+.|.++..++.-
T Consensus 386 d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~h 465 (582)
T KOG0062|consen 386 DRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRH 465 (582)
T ss_pred ccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHH
Confidence 44455689999999999999999999988754 3333221 1111 1233333333333
Q ss_pred HHHhhhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 297 FVMASLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 297 ~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
+. .+++. +.....+..||+|++-++.+|.. ..|.+|+||| ||+.+|.++...+..-|+...|
T Consensus 466 l~-----~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDE----------PTNhLD~dsl~AL~~Al~~F~G 530 (582)
T KOG0062|consen 466 LG-----SFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDE----------PTNHLDRDSLGALAKALKNFNG 530 (582)
T ss_pred HH-----hcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecC----------CCccccHHHHHHHHHHHHhcCC
Confidence 32 22332 22223367899999999998887 8999999999 9999999988888887776654
No 478
>KOG0927|consensus
Probab=99.05 E-value=3.8e-10 Score=109.56 Aligned_cols=126 Identities=22% Similarity=0.190 Sum_probs=83.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce-----EEEeccCcccccc-----cc-h--hH-HHHH---HHHHHh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-----FIRVSGSELVQKF-----IG-E--GS-RMVR---ELFVMA 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-----~i~~~~~~l~~~~-----~~-~--~~-~~v~---~~~~~a 300 (378)
..+.+..|+.++|+||||+||||++++|++..-|- ++.++..-.++.+ +- . .+ ..+. +-...+
T Consensus 94 ~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~ 173 (614)
T KOG0927|consen 94 VTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQA 173 (614)
T ss_pred eeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 45678899999999999999999999999876543 2222221111110 00 0 00 0000 000000
Q ss_pred -------------------h-----------hhhhhh-ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccC
Q psy6098 301 -------------------S-----------LKKLAF-AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGS 347 (378)
Q Consensus 301 -------------------~-----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~ 347 (378)
. +..+.+ ..........+|+|-+.|+..+|+ ..|.+|+|||
T Consensus 174 ~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDE------ 247 (614)
T KOG0927|consen 174 CDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDE------ 247 (614)
T ss_pred ccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecC------
Confidence 0 111111 233344556799999999999999 8999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 348 SRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 348 ~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
|++++|.++...+.++|..+|.
T Consensus 248 ----PtnhLDleA~~wLee~L~k~d~ 269 (614)
T KOG0927|consen 248 ----PTNHLDLEAIVWLEEYLAKYDR 269 (614)
T ss_pred ----CccCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999886
No 479
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.05 E-value=2.2e-10 Score=128.86 Aligned_cols=120 Identities=21% Similarity=0.192 Sum_probs=83.3
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccC-cc-ccc-ccchhHHHHHHHH---------------H
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGS-EL-VQK-FIGEGSRMVRELF---------------V 298 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~-~l-~~~-~~~~~~~~v~~~~---------------~ 298 (378)
++.+++|+.+++.||+|||||||+++|+|++.+. .|.+++. .+ .+. |. ...++++++ +
T Consensus 658 sl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l--~~~Ti~eNI~~g~~~~~~~~~~~~~ 735 (1522)
T TIGR00957 658 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWI--QNDSLRENILFGKALNEKYYQQVLE 735 (1522)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccc--cCCcHHHHhhcCCccCHHHHHHHHH
Confidence 5778899999999999999999999999998875 6666542 11 111 11 011222222 1
Q ss_pred Hhhh-hhhhhcc-----CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHh
Q psy6098 299 MASL-KKLAFAH-----HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ 370 (378)
Q Consensus 299 ~a~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~ 370 (378)
.+.+ ..+..-+ ........+|+|++||+++||+ ..|+|++||| |++++|+...+.+.+.+..
T Consensus 736 ~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDE----------p~saLD~~~~~~i~~~l~~ 805 (1522)
T TIGR00957 736 ACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD----------PLSAVDAHVGKHIFEHVIG 805 (1522)
T ss_pred HhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcC----------CccccCHHHHHHHHHHHhh
Confidence 1111 1111111 1123445799999999999999 8999999999 9999999999988887754
No 480
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.05 E-value=2.8e-10 Score=110.95 Aligned_cols=76 Identities=22% Similarity=0.269 Sum_probs=59.2
Q ss_pred CCCCCCCCChhHHHHHHHhhccCceEEEecccccc-ccccchhHHH-HHHHHHHHHh-cCCCCCceEEEeehhhhhhcc
Q psy6098 4 PLHPTWIVSGKTLLARAVAHHTECTFIRVSGSELV-QKFIGEGSRM-VRELFVMARC-KGSSRGTEFFTMDVDEAIKSS 79 (378)
Q Consensus 4 ~~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~-~~~~Gese~~-~~~~f~~a~~-~~~~~~~ilf~DEid~~~~~~ 79 (378)
=++.||||||||++||++|..++.+|+.++++++. ..|+|+.... ++.+++.+.- ...+.++||||||||.+....
T Consensus 111 iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~ 189 (412)
T PRK05342 111 ILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKS 189 (412)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcccc
Confidence 46889999999999999999999999999999987 4799986554 5666554310 001234699999999998763
No 481
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.04 E-value=1.3e-09 Score=103.99 Aligned_cols=70 Identities=30% Similarity=0.397 Sum_probs=54.4
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCc
Q psy6098 203 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 280 (378)
Q Consensus 203 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~ 280 (378)
..+++.+|++++|+++.++.+...+..... .-.++..++|+||||+|||++++++|..++..+...++..
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~ 86 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPA 86 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccc
Confidence 346677899999999999999887754211 1133457999999999999999999999988766665543
No 482
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.04 E-value=3.7e-10 Score=99.84 Aligned_cols=107 Identities=13% Similarity=0.047 Sum_probs=72.0
Q ss_pred ceeEeCCCCCchHHHHHHHhhhcCceE-----------------------EEeccCcccccccc-hhHHHHHHHHHHhhh
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHTECTF-----------------------IRVSGSELVQKFIG-EGSRMVRELFVMASL 302 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~~~~~-----------------------i~~~~~~l~~~~~~-~~~~~v~~~~~~a~~ 302 (378)
..+|+||||+||||++.+|...++... +.+....+...... .....+.+++..
T Consensus 23 l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 99 (198)
T cd03276 23 VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFLTS--- 99 (198)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHhcc---
Confidence 448999999999999999985443221 11111111111000 111122222221
Q ss_pred hhhhhccCchhhhhHhhhhhhhhhccccc------CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhc
Q psy6098 303 KKLAFAHHPLLFWSLLTILTNTIVCNFRE------HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 371 (378)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l 371 (378)
.......+..+|.|++|++.++++ ..|++++||| |++++|......+.++|.++
T Consensus 100 -----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDE----------P~~glD~~~~~~~~~~l~~~ 159 (198)
T cd03276 100 -----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDE----------FDVFMDMVNRKISTDLLVKE 159 (198)
T ss_pred -----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecC----------cccccCHHHHHHHHHHHHHH
Confidence 444566778999999999988764 5999999999 99999999999999988876
No 483
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.03 E-value=3.4e-11 Score=107.64 Aligned_cols=56 Identities=13% Similarity=-0.010 Sum_probs=47.4
Q ss_pred ccCchhhhhHhhhhhhhhhcccccC------CCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 308 AHHPLLFWSLLTILTNTIVCNFREH------APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~------~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
.......+..+|.|++|+++++++- +|.++++|| |++++|+.....+.++|.++..
T Consensus 118 ~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDE----------Pt~gLD~~~~~~l~~~l~~~~~ 179 (212)
T cd03274 118 PKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDE----------IDAALDFRNVSIVANYIKERTK 179 (212)
T ss_pred ccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcC----------CCcCCCHHHHHHHHHHHHHHcC
Confidence 3444556778999999999999842 479999999 9999999999999999999854
No 484
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.03 E-value=9.7e-10 Score=116.83 Aligned_cols=104 Identities=22% Similarity=0.361 Sum_probs=84.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC----------ceEE
Q psy6098 205 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE----------CTFI 274 (378)
Q Consensus 205 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~----------~~~i 274 (378)
..+..|+.+.|.++.++++.+.+.. ....+++|+||||||||++++.+|..+. ..++
T Consensus 173 a~~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~ 239 (821)
T CHL00095 173 AIDGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVI 239 (821)
T ss_pred HHcCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 4456688999999999998887554 1234789999999999999999998753 3477
Q ss_pred EeccCccc--ccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCC
Q psy6098 275 RVSGSELV--QKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 275 ~~~~~~l~--~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~ 350 (378)
.++...+. .+|.|+.+..+..++..+ +...+.|||||||+.|++.+.
T Consensus 240 ~l~~~~l~ag~~~~ge~e~rl~~i~~~~-----------------------------~~~~~~ILfiDEih~l~~~g~ 288 (821)
T CHL00095 240 TLDIGLLLAGTKYRGEFEERLKRIFDEI-----------------------------QENNNIILVIDEVHTLIGAGA 288 (821)
T ss_pred EeeHHHHhccCCCccHHHHHHHHHHHHH-----------------------------HhcCCeEEEEecHHHHhcCCC
Confidence 88887775 468899999999999877 445789999999999998753
No 485
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.02 E-value=7.6e-10 Score=103.81 Aligned_cols=130 Identities=18% Similarity=0.173 Sum_probs=91.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccch-------------------------hH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGE-------------------------GS 290 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~-------------------------~~ 290 (378)
.++.++.|+.+-|+|.|||||||+++.+.|+..|+ .|.++|..+..+...+ ++
T Consensus 342 iNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~ 421 (546)
T COG4615 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASP 421 (546)
T ss_pred eeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCCh
Confidence 34567789999999999999999999999999987 8999998664332222 22
Q ss_pred HHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHH-HH
Q psy6098 291 RMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML-EL 367 (378)
Q Consensus 291 ~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~-~l 367 (378)
+.+.+.+++-.+...---.....-.-.+|.|+++|++.+-+ ...+|++||| .-...||..+|.+. .+
T Consensus 422 q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DE----------WAADQDPaFRR~FY~~l 491 (546)
T COG4615 422 QLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDE----------WAADQDPAFRREFYQVL 491 (546)
T ss_pred HHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeeh----------hhccCChHHHHHHHHHH
Confidence 23333333221111111122223344689999999876655 6778999999 66778999999887 66
Q ss_pred HHhccCCCCC
Q psy6098 368 LNQLDGFEAT 377 (378)
Q Consensus 368 L~~l~~~~~~ 377 (378)
|-.|+.+|+|
T Consensus 492 Lp~LK~qGKT 501 (546)
T COG4615 492 LPLLKEQGKT 501 (546)
T ss_pred hHHHHHhCCe
Confidence 7778888876
No 486
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.02 E-value=1.4e-09 Score=102.88 Aligned_cols=63 Identities=29% Similarity=0.400 Sum_probs=48.7
Q ss_pred CcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccC
Q psy6098 209 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 279 (378)
Q Consensus 209 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~ 279 (378)
+|++++|+++++++|..++...... -..+..++|+||||+|||++++++|..++.++....+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~ 64 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGP 64 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccc
Confidence 6889999999999998887542111 12344689999999999999999999988775555443
No 487
>PLN03025 replication factor C subunit; Provisional
Probab=99.01 E-value=2.5e-09 Score=101.70 Aligned_cols=56 Identities=29% Similarity=0.444 Sum_probs=46.4
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhc
Q psy6098 201 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 269 (378)
Q Consensus 201 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~ 269 (378)
+.+.++|.+++++.|++++++.|+.++.. ....+++|+||||+||||+++++|..+
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 56678899999999999999998876543 111258999999999999999999886
No 488
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.01 E-value=6.8e-10 Score=102.01 Aligned_cols=51 Identities=10% Similarity=-0.012 Sum_probs=45.1
Q ss_pred hhhhhHhhhhhhhhhccccc------CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 312 LLFWSLLTILTNTIVCNFRE------HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~------~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
...+..+|.|++|+++++++ .+|.++++|| |++++|+.....+.++|.++.
T Consensus 161 ~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDE----------Pt~~ld~~~~~~~~~~l~~~~ 217 (251)
T cd03273 161 KESLTELSGGQRSLVALSLILALLLFKPAPMYILDE----------VDAALDLSHTQNIGRMIKTHF 217 (251)
T ss_pred cccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeC----------CCcCCCHHHHHHHHHHHHHHc
Confidence 45677899999999999985 4679999999 999999999999999998874
No 489
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.01 E-value=1.1e-09 Score=107.80 Aligned_cols=100 Identities=31% Similarity=0.534 Sum_probs=71.1
Q ss_pred cccCCCCCcccccCcHHHHHH---HHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEecc
Q psy6098 202 VEKVPDSTYEMVGGLDNQIKE---IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 278 (378)
Q Consensus 202 ~~~~~~~~~~~i~g~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~ 278 (378)
.+.+++.++++++|+++.+.. +.+.+.. .....++|+|||||||||++++|+..++..++.++.
T Consensus 3 a~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 3 AERMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred hhhhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 456778899999999999766 7666543 112368999999999999999999999998888876
Q ss_pred CcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCcccc
Q psy6098 279 SELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIG 346 (378)
Q Consensus 279 ~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~ 346 (378)
... +...+++++..+.... ......||||||||.+.
T Consensus 70 ~~~-------~~~~ir~ii~~~~~~~-------------------------~~g~~~vL~IDEi~~l~ 105 (413)
T PRK13342 70 VTS-------GVKDLREVIEEARQRR-------------------------SAGRRTILFIDEIHRFN 105 (413)
T ss_pred ccc-------cHHHHHHHHHHHHHhh-------------------------hcCCceEEEEechhhhC
Confidence 422 2334455554441100 12367899999999753
No 490
>KOG0745|consensus
Probab=99.00 E-value=8.9e-10 Score=104.26 Aligned_cols=103 Identities=31% Similarity=0.487 Sum_probs=71.0
Q ss_pred cceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccc-cccchhHHHH-HHHHHHhhhhhhhhccCchhhhhHhhhhhh
Q psy6098 246 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIGEGSRMV-RELFVMASLKKLAFAHHPLLFWSLLTILTN 323 (378)
Q Consensus 246 ~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~-~~~~~~~~~v-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 323 (378)
.+++|.||+|+|||.|+++||..+..+|+.+++..+.+ .|+|+....+ ..++..|...-
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nV------------------- 287 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNV------------------- 287 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCH-------------------
Confidence 37999999999999999999999999999999999976 4999977754 44444442110
Q ss_pred hhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 324 TIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 324 ~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
.+....|+||||+|+|...-..-...-|....-+--.||+-++|
T Consensus 288 ------ekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 288 ------EKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred ------HHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcc
Confidence 12356799999999999653222222344333333344444444
No 491
>KOG0743|consensus
Probab=99.00 E-value=1.6e-09 Score=103.73 Aligned_cols=136 Identities=26% Similarity=0.355 Sum_probs=100.8
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccc
Q psy6098 204 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 283 (378)
Q Consensus 204 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~ 283 (378)
.-.+.+|+.++=-.+.|++|.+-+....+..+-++..|....+++|||||||||||+++.|||+.++-+..-++..+...
T Consensus 194 f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~ 273 (457)
T KOG0743|consen 194 FPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL 273 (457)
T ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC
Confidence 34457888888888999999988888888888899999999999999999999999999999999998876666554422
Q ss_pred cccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCC---CCCCCC-hH
Q psy6098 284 KFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIE---SGSGGD-SE 359 (378)
Q Consensus 284 ~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~---~~~~~d-~~ 359 (378)
. .. ++.++.. ...-+||+|.+||+=+.-|.. ...+.+ ..
T Consensus 274 n-----~d-Lr~LL~~-------------------------------t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~ 316 (457)
T KOG0743|consen 274 D-----SD-LRHLLLA-------------------------------TPNKSILLIEDIDCSFDLRERRKKKKENFEGDL 316 (457)
T ss_pred c-----HH-HHHHHHh-------------------------------CCCCcEEEEeecccccccccccccccccccCCc
Confidence 2 11 4444432 357789999999975543322 212222 13
Q ss_pred HHHHHHHHHHhccCCCC
Q psy6098 360 VQRTMLELLNQLDGFEA 376 (378)
Q Consensus 360 ~~~~~~~lL~~l~~~~~ 376 (378)
..-.+..||.-+||.-+
T Consensus 317 ~~VTlSGLLNfiDGlwS 333 (457)
T KOG0743|consen 317 SRVTLSGLLNFLDGLWS 333 (457)
T ss_pred ceeehHHhhhhhccccc
Confidence 44577889999998754
No 492
>KOG0989|consensus
Probab=99.00 E-value=1.3e-09 Score=99.29 Aligned_cols=61 Identities=31% Similarity=0.475 Sum_probs=50.7
Q ss_pred hhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce
Q psy6098 199 LMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 272 (378)
Q Consensus 199 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~ 272 (378)
+.+.+.+++.+++++.|++.+++.|...+.. .-...++||||||||||+.+++.|..+..+
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~ 84 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCE 84 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCc
Confidence 3466788999999999999999999887653 112369999999999999999999988763
No 493
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.99 E-value=5.5e-10 Score=108.45 Aligned_cols=76 Identities=24% Similarity=0.313 Sum_probs=57.9
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEecccccc-ccccchh-HHHHHHHHHHHHh-cCCCCCceEEEeehhhhhhccC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELV-QKFIGEG-SRMVRELFVMARC-KGSSRGTEFFTMDVDEAIKSSE 80 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~-~~~~Ges-e~~~~~~f~~a~~-~~~~~~~ilf~DEid~~~~~~~ 80 (378)
++.||||||||++||++|..++.+|..++++.+. .+|+|+. +..+..++..+.- ...+.++|+||||+|.+.+..+
T Consensus 120 LL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~ 198 (413)
T TIGR00382 120 LLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSE 198 (413)
T ss_pred EEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhc
Confidence 6789999999999999999999999999999887 4699986 4445555543311 0112345999999999987543
No 494
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.99 E-value=6.5e-10 Score=104.57 Aligned_cols=126 Identities=21% Similarity=0.261 Sum_probs=93.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce-------EEEeccCcccccc-----------cc------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-------FIRVSGSELVQKF-----------IG------------ 287 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-------~i~~~~~~l~~~~-----------~~------------ 287 (378)
-+|.+.+|+.++|.|.+|+|||..+.+|.+++..+ .|.++|.++.... ++
T Consensus 29 isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNP 108 (534)
T COG4172 29 ISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNP 108 (534)
T ss_pred ceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCc
Confidence 57889999999999999999999999999998752 7888888773210 00
Q ss_pred --hhHHHHHHHHHHh--------------hhhhhhh---ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCcccc
Q psy6098 288 --EGSRMVRELFVMA--------------SLKKLAF---AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIG 346 (378)
Q Consensus 288 --~~~~~v~~~~~~a--------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~ 346 (378)
--++.+.+.+... .+..+++ +.....++..+|+|++|++-+|.+ +.|.+|+-||
T Consensus 109 l~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADE----- 183 (534)
T COG4172 109 LHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADE----- 183 (534)
T ss_pred HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecC-----
Confidence 0011222222211 1222332 234455677899999999988887 9999999999
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 347 SSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 347 ~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
||.++|...+..++++|++|..
T Consensus 184 -----PTTALDVtvQaQIL~Ll~~Lq~ 205 (534)
T COG4172 184 -----PTTALDVTVQAQILDLLKELQA 205 (534)
T ss_pred -----CcchhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999998864
No 495
>PTZ00243 ABC transporter; Provisional
Probab=98.99 E-value=4.6e-10 Score=126.22 Aligned_cols=118 Identities=18% Similarity=0.209 Sum_probs=77.5
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccC-c-cccc-cc--c-----------hhHHHHHHHHHHh
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGS-E-LVQK-FI--G-----------EGSRMVRELFVMA 300 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~-~-l~~~-~~--~-----------~~~~~v~~~~~~a 300 (378)
++.+.+|+.++|+||||+|||||+++|+|.+.+. .|.+... . +.+. +. + .......+....+
T Consensus 680 sl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~ 759 (1560)
T PTZ00243 680 SVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVS 759 (1560)
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHh
Confidence 5778999999999999999999999999998765 4433221 0 0111 10 0 0001111222211
Q ss_pred hh----hhh--hhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHH
Q psy6098 301 SL----KKL--AFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLE 366 (378)
Q Consensus 301 ~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~ 366 (378)
.+ ..+ +...........||+|++||++++|+ .+|+|++||| |++++|+.....+.+
T Consensus 760 ~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDE----------P~saLD~~~~~~i~~ 823 (1560)
T PTZ00243 760 QLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDD----------PLSALDAHVGERVVE 823 (1560)
T ss_pred hhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcC----------ccccCCHHHHHHHHH
Confidence 11 111 11122233456799999999999999 8999999999 999999987766654
No 496
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.99 E-value=1e-09 Score=97.49 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=43.4
Q ss_pred hhhhhHhhhhhhhh------hccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHH-HHHHHHHhccC
Q psy6098 312 LLFWSLLTILTNTI------VCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR-TMLELLNQLDG 373 (378)
Q Consensus 312 ~~~~~~~~~~~~~~------~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~-~~~~lL~~l~~ 373 (378)
...+..+|.|++|+ ++++++ ..|++++||| |++++|+.... .+.++|.++..
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE----------P~~~LD~~~~~~~l~~~l~~~~~ 170 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE----------PTTNLDEENIEESLAEIIEERKS 170 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC----------CccccCHHHHHHHHHHHHHHHHh
Confidence 34566899999996 455555 7999999999 99999999998 99999988754
No 497
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=3e-09 Score=104.44 Aligned_cols=59 Identities=24% Similarity=0.406 Sum_probs=48.1
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 201 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 201 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
+.+.+++.+|++++|+++++..|...+... ..+..++|+||+||||||+|+++|..+..
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 345678899999999999999988886641 11235899999999999999999998765
No 498
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=3.8e-09 Score=106.72 Aligned_cols=58 Identities=22% Similarity=0.377 Sum_probs=47.9
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 202 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 202 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
.+.+++.+|++++|++++++.|..++... ..+..++|+||+|+||||+++++|..+.+
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45678899999999999999998887631 11346899999999999999999988754
No 499
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.97 E-value=2.5e-09 Score=113.72 Aligned_cols=108 Identities=21% Similarity=0.377 Sum_probs=82.0
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhc----------Cc
Q psy6098 202 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------EC 271 (378)
Q Consensus 202 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~----------~~ 271 (378)
.+...+..++.++|.++.+.++.+.+.. ....+++|+||||||||++++.+|..+ +.
T Consensus 169 ~~~~r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~ 235 (857)
T PRK10865 169 TERAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGR 235 (857)
T ss_pred HHHHhcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCC
Confidence 3445667788999999987777665443 122368999999999999999999876 34
Q ss_pred eEEEeccCccc--ccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCC
Q psy6098 272 TFIRVSGSELV--QKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSR 349 (378)
Q Consensus 272 ~~i~~~~~~l~--~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r 349 (378)
.++.++...+. .+|.|+.+..++++|.... +...|.|||||||+.|.+.+
T Consensus 236 ~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~----------------------------~~~~~~ILfIDEih~l~~~~ 287 (857)
T PRK10865 236 RVLALDMGALVAGAKYRGEFEERLKGVLNDLA----------------------------KQEGNVILFIDELHTMVGAG 287 (857)
T ss_pred EEEEEehhhhhhccchhhhhHHHHHHHHHHHH----------------------------HcCCCeEEEEecHHHhccCC
Confidence 56777766664 4578888888988887651 23478999999999998775
Q ss_pred C
Q psy6098 350 I 350 (378)
Q Consensus 350 ~ 350 (378)
.
T Consensus 288 ~ 288 (857)
T PRK10865 288 K 288 (857)
T ss_pred C
Confidence 3
No 500
>PLN03232 ABC transporter C family member; Provisional
Probab=98.96 E-value=1.2e-09 Score=122.80 Aligned_cols=123 Identities=18% Similarity=0.090 Sum_probs=80.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce---EEEeccC--------cccccc------c--chhHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT---FIRVSGS--------ELVQKF------I--GEGSRMVRELFV 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~---~i~~~~~--------~l~~~~------~--~~~~~~v~~~~~ 298 (378)
-++.+++|+.++++||+|||||||+++|.|++.+. .+.+.+. .+.... . ...+....++++
T Consensus 636 inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~ 715 (1495)
T PLN03232 636 INLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAID 715 (1495)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHH
Confidence 35778999999999999999999999999998764 2332221 111110 0 112233444444
Q ss_pred Hhhhhhhhhc-cC-chh----hhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHH-HHHH
Q psy6098 299 MASLKKLAFA-HH-PLL----FWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML-ELLN 369 (378)
Q Consensus 299 ~a~~~~~~~~-~~-~~~----~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~-~lL~ 369 (378)
.+.+...-.. +. ... .=..||+|++||+++||+ .+|+|++||| |++++|+++.+.+. +++.
T Consensus 716 ~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDE----------ptSaLD~~t~~~I~~~~l~ 785 (1495)
T PLN03232 716 VTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDD----------PLSALDAHVAHQVFDSCMK 785 (1495)
T ss_pred HhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcC----------CccccCHHHHHHHHHHHhh
Confidence 4433221111 11 111 123699999999999999 8999999999 99999998877564 5555
Q ss_pred h
Q psy6098 370 Q 370 (378)
Q Consensus 370 ~ 370 (378)
.
T Consensus 786 ~ 786 (1495)
T PLN03232 786 D 786 (1495)
T ss_pred h
Confidence 3
Done!