Query psy6098
Match_columns 378
No_of_seqs 279 out of 3328
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 17:32:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6098.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6098hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 1.3E-51 4.5E-56 426.8 7.8 323 5-376 242-613 (806)
2 4b4t_J 26S protease regulatory 100.0 7.5E-42 2.6E-46 327.6 23.1 268 80-376 17-284 (405)
3 4b4t_K 26S protease regulatory 100.0 2.9E-37 9.9E-42 299.9 22.2 257 91-376 52-308 (428)
4 4b4t_L 26S protease subunit RP 100.0 4.5E-37 1.6E-41 298.9 23.2 236 112-376 82-317 (437)
5 4b4t_I 26S protease regulatory 100.0 2.6E-37 8.9E-42 296.8 20.0 234 114-376 85-318 (437)
6 4b4t_M 26S protease regulatory 100.0 1.1E-35 3.9E-40 288.8 19.3 245 103-376 47-317 (434)
7 4b4t_H 26S protease regulatory 100.0 2E-35 6.9E-40 286.3 16.4 204 144-376 142-345 (467)
8 1ypw_A Transitional endoplasmi 100.0 1.6E-36 5.3E-41 318.8 7.4 325 5-375 242-612 (806)
9 3cf2_A TER ATPase, transitiona 99.9 1.6E-24 5.5E-29 224.6 11.6 141 203-375 196-336 (806)
10 4b4t_J 26S protease regulatory 99.9 5.2E-26 1.8E-30 218.0 -0.8 154 5-170 186-346 (405)
11 4b4t_I 26S protease regulatory 99.9 3.3E-25 1.1E-29 213.0 -3.5 154 5-170 220-380 (437)
12 4b4t_H 26S protease regulatory 99.9 2.4E-24 8.4E-29 208.8 0.9 142 5-155 247-395 (467)
13 4b4t_M 26S protease regulatory 99.9 8.7E-25 3E-29 212.4 -5.7 141 5-154 219-366 (434)
14 1r6b_X CLPA protein; AAA+, N-t 99.9 4.6E-21 1.6E-25 201.2 22.0 73 2-77 208-292 (758)
15 4b4t_L 26S protease subunit RP 99.9 3.5E-24 1.2E-28 208.3 -4.3 142 5-155 219-367 (437)
16 1xwi_A SKD1 protein; VPS4B, AA 99.9 2.7E-21 9.4E-26 182.7 15.4 140 203-375 4-144 (322)
17 2x8a_A Nuclear valosin-contain 99.9 7.6E-22 2.6E-26 182.3 10.7 141 204-376 3-143 (274)
18 4b4t_K 26S protease regulatory 99.9 8.3E-24 2.8E-28 205.4 -2.9 142 5-155 210-359 (428)
19 3cf0_A Transitional endoplasmi 99.9 2.9E-22 9.8E-27 187.7 7.6 144 202-374 6-149 (301)
20 3pxi_A Negative regulator of g 99.9 5.4E-21 1.9E-25 200.5 16.4 63 2-70 202-274 (758)
21 2ce7_A Cell division protein F 99.8 9.7E-21 3.3E-25 186.7 13.6 141 205-375 10-150 (476)
22 1qvr_A CLPB protein; coiled co 99.8 6.1E-20 2.1E-24 194.7 20.7 72 2-76 192-276 (854)
23 3h4m_A Proteasome-activating n 99.8 2E-20 7E-25 173.4 13.4 145 202-375 8-152 (285)
24 3eie_A Vacuolar protein sortin 99.8 6E-20 2E-24 173.6 13.9 141 201-374 8-148 (322)
25 1lv7_A FTSH; alpha/beta domain 99.8 1.3E-19 4.6E-24 165.5 13.8 143 203-375 4-146 (257)
26 2qp9_X Vacuolar protein sortin 99.8 5.6E-20 1.9E-24 176.1 11.1 140 202-374 42-181 (355)
27 2zan_A Vacuolar protein sortin 99.8 2.1E-19 7.1E-24 177.1 11.9 142 201-375 124-266 (444)
28 2qz4_A Paraplegin; AAA+, SPG7, 99.8 6.1E-19 2.1E-23 161.1 13.1 140 206-375 1-141 (262)
29 2dhr_A FTSH; AAA+ protein, hex 99.8 9E-19 3.1E-23 173.6 14.9 141 206-376 26-166 (499)
30 3d8b_A Fidgetin-like protein 1 99.8 1.6E-18 5.4E-23 166.1 12.9 142 200-374 73-214 (357)
31 3b9p_A CG5977-PA, isoform A; A 99.8 4.4E-18 1.5E-22 158.6 15.5 140 201-373 11-150 (297)
32 1ixz_A ATP-dependent metallopr 99.8 2.8E-18 9.6E-23 156.4 12.4 144 202-375 7-150 (254)
33 3hu3_A Transitional endoplasmi 99.8 1.5E-18 5E-23 172.4 11.2 138 205-374 198-335 (489)
34 3vfd_A Spastin; ATPase, microt 99.7 5.5E-18 1.9E-22 164.2 12.8 145 197-374 101-245 (389)
35 1ypw_A Transitional endoplasmi 99.7 4.9E-18 1.7E-22 178.4 12.1 140 204-375 197-336 (806)
36 1iy2_A ATP-dependent metallopr 99.7 2.5E-17 8.5E-22 152.3 12.8 142 204-375 33-174 (278)
37 3tui_C Methionine import ATP-b 99.7 4.8E-18 1.6E-22 161.4 6.4 125 238-372 47-210 (366)
38 3gfo_A Cobalt import ATP-bindi 99.7 5.7E-18 2E-22 155.9 6.3 125 238-372 27-190 (275)
39 2r62_A Cell division protease 99.7 6.2E-19 2.1E-23 162.0 -0.4 142 204-375 4-146 (268)
40 3tif_A Uncharacterized ABC tra 99.7 7E-18 2.4E-22 152.1 6.5 125 238-372 24-192 (235)
41 3cmw_A Protein RECA, recombina 99.7 2.6E-17 8.8E-22 181.3 12.1 138 206-373 1015-1203(1706)
42 2pcj_A ABC transporter, lipopr 99.7 7.9E-18 2.7E-22 150.7 6.7 129 238-376 23-191 (224)
43 2olj_A Amino acid ABC transpor 99.7 1.1E-17 3.8E-22 153.0 7.4 129 238-376 43-210 (263)
44 1vpl_A ABC transporter, ATP-bi 99.7 1.1E-17 3.8E-22 152.5 7.3 129 238-376 34-197 (256)
45 4g1u_C Hemin import ATP-bindin 99.7 9.5E-18 3.3E-22 153.8 6.5 126 238-373 30-195 (266)
46 3rlf_A Maltose/maltodextrin im 99.7 1.3E-17 4.6E-22 159.3 7.2 125 238-372 22-180 (381)
47 1b0u_A Histidine permease; ABC 99.7 1.6E-17 5.3E-22 152.2 6.8 130 238-377 25-205 (262)
48 2ihy_A ABC transporter, ATP-bi 99.7 1.6E-17 5.6E-22 153.3 6.9 129 238-376 40-212 (279)
49 3fvq_A Fe(3+) IONS import ATP- 99.7 1.7E-17 5.8E-22 157.5 6.8 124 238-371 23-184 (359)
50 1z47_A CYSA, putative ABC-tran 99.7 2.6E-17 9E-22 156.2 7.8 125 238-372 34-192 (355)
51 1ji0_A ABC transporter; ATP bi 99.7 1.7E-17 5.8E-22 150.0 6.0 130 238-377 25-191 (240)
52 2yyz_A Sugar ABC transporter, 99.7 3.2E-17 1.1E-21 156.0 7.8 125 238-372 22-180 (359)
53 1g6h_A High-affinity branched- 99.7 4.4E-17 1.5E-21 148.8 8.0 129 238-376 26-204 (257)
54 1sgw_A Putative ABC transporte 99.7 1.6E-17 5.5E-22 147.3 4.5 124 238-372 28-180 (214)
55 2onk_A Molybdate/tungstate ABC 99.7 2.1E-17 7.3E-22 149.2 5.2 124 238-372 18-173 (240)
56 2it1_A 362AA long hypothetical 99.7 3.8E-17 1.3E-21 155.6 7.1 125 238-372 22-180 (362)
57 3d31_A Sulfate/molybdate ABC t 99.7 4.9E-17 1.7E-21 154.2 7.6 125 238-372 19-174 (348)
58 1v43_A Sugar-binding transport 99.7 4.4E-17 1.5E-21 155.8 5.7 125 238-372 30-188 (372)
59 2ff7_A Alpha-hemolysin translo 99.7 1.3E-16 4.5E-21 144.8 8.6 125 238-372 28-192 (247)
60 1g29_1 MALK, maltose transport 99.7 8.6E-17 2.9E-21 154.0 7.6 125 238-372 22-186 (372)
61 2yz2_A Putative ABC transporte 99.7 7.6E-17 2.6E-21 148.0 6.2 129 238-376 26-189 (266)
62 2ixe_A Antigen peptide transpo 99.6 3.5E-16 1.2E-20 143.9 10.4 126 238-373 38-204 (271)
63 1oxx_K GLCV, glucose, ABC tran 99.6 7.4E-17 2.5E-21 153.5 5.2 125 238-372 24-187 (353)
64 2pjz_A Hypothetical protein ST 99.6 2.6E-16 8.9E-21 143.9 8.4 123 238-372 24-175 (263)
65 2qi9_C Vitamin B12 import ATP- 99.6 8.2E-17 2.8E-21 146.1 4.9 129 238-376 19-184 (249)
66 2d2e_A SUFC protein; ABC-ATPas 99.6 1E-16 3.5E-21 145.8 5.2 129 238-376 22-194 (250)
67 2x8a_A Nuclear valosin-contain 99.6 5.7E-18 2E-22 156.2 -3.8 137 5-153 48-191 (274)
68 3hu3_A Transitional endoplasmi 99.6 1.2E-17 3.9E-22 165.9 -2.4 74 5-81 242-315 (489)
69 1mv5_A LMRA, multidrug resista 99.6 1.4E-16 4.7E-21 144.4 4.1 125 238-372 21-186 (243)
70 2nq2_C Hypothetical ABC transp 99.6 2.4E-16 8.2E-21 143.5 5.4 125 238-373 24-176 (253)
71 2zu0_C Probable ATP-dependent 99.6 4.7E-16 1.6E-20 142.7 7.3 129 238-376 39-215 (267)
72 2ghi_A Transport protein; mult 99.6 8.9E-16 3.1E-20 140.3 7.9 126 238-373 39-203 (260)
73 3nh6_A ATP-binding cassette SU 99.6 7.7E-16 2.6E-20 143.6 7.1 126 238-373 73-238 (306)
74 1xwi_A SKD1 protein; VPS4B, AA 99.6 5.7E-16 1.9E-20 146.2 6.3 74 5-81 49-123 (322)
75 3t15_A Ribulose bisphosphate c 99.6 4E-16 1.4E-20 145.3 4.7 74 5-81 40-117 (293)
76 2c9o_A RUVB-like 1; hexameric 99.6 1.6E-15 5.5E-20 149.9 9.3 112 206-352 32-145 (456)
77 3t15_A Ribulose bisphosphate c 99.6 7.4E-16 2.5E-20 143.5 6.2 86 240-350 31-116 (293)
78 3eie_A Vacuolar protein sortin 99.6 1E-15 3.6E-20 144.4 6.9 72 5-79 55-126 (322)
79 1g41_A Heat shock protein HSLU 99.6 1.4E-15 5E-20 147.9 6.8 128 3-146 52-181 (444)
80 2pze_A Cystic fibrosis transme 99.6 1.4E-15 4.7E-20 136.5 5.0 124 238-372 27-178 (229)
81 2cbz_A Multidrug resistance-as 99.6 2.3E-15 7.8E-20 135.8 6.2 121 238-369 24-171 (237)
82 3gd7_A Fusion complex of cysti 99.6 1.7E-15 5.9E-20 145.6 5.3 125 238-372 40-202 (390)
83 3cf0_A Transitional endoplasmi 99.5 1E-15 3.5E-20 143.1 3.1 73 5-80 53-125 (301)
84 2ce7_A Cell division protein F 99.5 5.7E-15 2E-19 145.5 7.9 73 5-80 53-125 (476)
85 2qp9_X Vacuolar protein sortin 99.5 2.4E-15 8.1E-20 143.9 4.8 73 5-80 88-160 (355)
86 3syl_A Protein CBBX; photosynt 99.5 2.7E-14 9.4E-19 133.4 11.8 124 212-370 32-165 (309)
87 3ozx_A RNAse L inhibitor; ATP 99.5 5.5E-15 1.9E-19 148.2 6.8 124 239-372 288-432 (538)
88 3b5x_A Lipid A export ATP-bind 99.5 1.1E-14 3.8E-19 148.0 8.8 126 238-373 362-528 (582)
89 3b60_A Lipid A export ATP-bind 99.5 1E-14 3.4E-19 148.4 7.5 126 238-373 362-528 (582)
90 3cmw_A Protein RECA, recombina 99.5 6.7E-15 2.3E-19 162.3 6.4 72 5-79 1086-1176(1706)
91 2yl4_A ATP-binding cassette SU 99.5 1.9E-14 6.4E-19 146.8 7.6 126 238-373 363-531 (595)
92 2zan_A Vacuolar protein sortin 99.5 6E-15 2.1E-19 145.1 3.8 74 5-81 171-245 (444)
93 3qf4_A ABC transporter, ATP-bi 99.5 2.2E-14 7.5E-19 145.8 8.0 126 238-373 362-527 (587)
94 2bbs_A Cystic fibrosis transme 99.5 9.4E-15 3.2E-19 135.4 4.7 122 238-371 57-206 (290)
95 3h4m_A Proteasome-activating n 99.5 5E-14 1.7E-18 130.2 9.3 74 5-81 55-128 (285)
96 3hws_A ATP-dependent CLP prote 99.5 2.6E-14 8.9E-19 137.0 7.4 137 212-373 16-156 (363)
97 2c9o_A RUVB-like 1; hexameric 99.5 4.7E-15 1.6E-19 146.5 2.3 74 4-81 66-144 (456)
98 4a82_A Cystic fibrosis transme 99.5 3.2E-14 1.1E-18 144.5 8.3 126 238-373 360-525 (578)
99 3b9p_A CG5977-PA, isoform A; A 99.5 2.6E-14 9E-19 132.9 6.2 73 5-80 58-130 (297)
100 1yqt_A RNAse L inhibitor; ATP- 99.5 2.3E-14 7.9E-19 143.9 6.2 126 241-376 43-209 (538)
101 3d8b_A Fidgetin-like protein 1 99.5 2.6E-14 9E-19 136.7 6.1 72 5-79 121-192 (357)
102 3qf4_B Uncharacterized ABC tra 99.5 3.2E-14 1.1E-18 145.0 7.0 125 238-372 374-538 (598)
103 3j16_B RLI1P; ribosome recycli 99.5 2.7E-14 9.4E-19 144.9 6.2 127 241-377 99-273 (608)
104 3ozx_A RNAse L inhibitor; ATP 99.5 3E-14 1E-18 142.9 6.2 122 242-373 22-186 (538)
105 1lv7_A FTSH; alpha/beta domain 99.5 5E-14 1.7E-18 128.3 6.8 73 5-80 49-121 (257)
106 3m6a_A ATP-dependent protease 99.5 2.6E-14 8.9E-19 143.9 5.4 104 209-349 79-191 (543)
107 3bk7_A ABC transporter ATP-bin 99.5 2.9E-14 9.9E-19 144.9 5.6 126 241-376 113-279 (607)
108 2qz4_A Paraplegin; AAA+, SPG7, 99.5 3.2E-14 1.1E-18 129.6 5.4 72 5-79 43-114 (262)
109 3bk7_A ABC transporter ATP-bin 99.5 3E-14 1E-18 144.8 5.6 124 239-372 376-518 (607)
110 3vfd_A Spastin; ATPase, microt 99.5 3.5E-14 1.2E-18 137.4 5.7 72 5-79 152-223 (389)
111 1yqt_A RNAse L inhibitor; ATP- 99.5 3.3E-14 1.1E-18 142.8 5.2 124 239-372 306-448 (538)
112 3j16_B RLI1P; ribosome recycli 99.4 3.7E-13 1.3E-17 136.6 10.2 116 243-372 376-514 (608)
113 2r62_A Cell division protease 99.4 3.4E-14 1.2E-18 130.2 1.2 72 5-79 48-119 (268)
114 2dhr_A FTSH; AAA+ protein, hex 99.4 2.2E-13 7.4E-18 135.1 5.7 73 5-80 68-140 (499)
115 1um8_A ATP-dependent CLP prote 99.4 1.2E-12 4.1E-17 126.0 9.6 133 212-369 22-176 (376)
116 1g41_A Heat shock protein HSLU 99.3 2.9E-13 1E-17 131.7 4.3 125 212-375 16-143 (444)
117 3g5u_A MCG1178, multidrug resi 99.3 1.5E-12 5.3E-17 143.0 8.8 125 239-373 1053-1219(1284)
118 3ux8_A Excinuclease ABC, A sub 99.3 6.2E-13 2.1E-17 137.4 4.8 57 311-377 196-256 (670)
119 4gp7_A Metallophosphoesterase; 99.3 2.4E-13 8.1E-18 116.3 1.4 125 239-375 3-149 (171)
120 3hws_A ATP-dependent CLP prote 99.3 1.2E-12 4.2E-17 125.3 5.5 74 5-81 55-134 (363)
121 4f4c_A Multidrug resistance pr 99.3 1.8E-12 6.1E-17 142.8 7.1 124 239-372 1099-1264(1321)
122 1ofh_A ATP-dependent HSL prote 99.3 5.7E-12 1.9E-16 117.4 9.0 115 212-350 16-133 (310)
123 3g5u_A MCG1178, multidrug resi 99.3 2.4E-12 8.2E-17 141.5 7.3 125 238-372 409-573 (1284)
124 3syl_A Protein CBBX; photosynt 99.3 2.6E-12 8.9E-17 119.9 5.8 69 5-79 71-146 (309)
125 1jbk_A CLPB protein; beta barr 99.3 1.1E-11 3.8E-16 106.4 9.2 105 204-349 15-131 (195)
126 1ixz_A ATP-dependent metallopr 99.3 3.2E-12 1.1E-16 116.1 5.9 72 5-79 53-124 (254)
127 3ec2_A DNA replication protein 99.2 5.1E-12 1.7E-16 108.6 5.8 122 205-372 4-130 (180)
128 4f4c_A Multidrug resistance pr 99.2 5.1E-12 1.8E-16 139.2 6.6 125 238-372 437-601 (1321)
129 1d2n_A N-ethylmaleimide-sensit 99.2 4.9E-11 1.7E-15 109.4 12.0 107 212-350 34-141 (272)
130 3pfi_A Holliday junction ATP-d 99.2 8.4E-11 2.9E-15 111.1 13.8 114 201-370 19-132 (338)
131 1d2n_A N-ethylmaleimide-sensit 99.2 7.5E-12 2.6E-16 114.8 6.1 73 5-80 68-141 (272)
132 2p65_A Hypothetical protein PF 99.2 2.7E-11 9.4E-16 103.6 8.8 105 205-350 16-132 (187)
133 2iw3_A Elongation factor 3A; a 99.2 1.6E-11 5.3E-16 129.6 8.5 116 239-370 455-593 (986)
134 3cmu_A Protein RECA, recombina 99.2 4.7E-11 1.6E-15 133.3 12.3 71 5-78 1085-1174(2050)
135 2iw3_A Elongation factor 3A; a 99.2 8.5E-12 2.9E-16 131.6 6.1 50 312-371 896-947 (986)
136 1iy2_A ATP-dependent metallopr 99.2 6.4E-12 2.2E-16 115.8 4.6 72 5-79 77-148 (278)
137 1sxj_A Activator 1 95 kDa subu 99.2 1.6E-11 5.4E-16 123.0 6.7 86 199-284 27-116 (516)
138 3uk6_A RUVB-like 2; hexameric 99.2 8.2E-11 2.8E-15 112.4 11.1 82 208-298 41-124 (368)
139 1ye8_A Protein THEP1, hypothet 99.2 1.2E-11 4E-16 106.4 4.4 111 247-370 2-128 (178)
140 3ux8_A Excinuclease ABC, A sub 99.2 2.2E-11 7.5E-16 125.8 6.9 57 311-377 537-598 (670)
141 3co5_A Putative two-component 99.2 3.7E-11 1.3E-15 99.4 6.5 98 212-371 5-102 (143)
142 3n70_A Transport activator; si 99.1 1.3E-10 4.3E-15 96.4 8.9 97 212-369 2-101 (145)
143 3b85_A Phosphate starvation-in 99.1 2.2E-11 7.4E-16 107.3 4.1 114 243-376 20-150 (208)
144 3u61_B DNA polymerase accessor 99.1 3.9E-10 1.3E-14 105.9 11.8 119 200-371 15-133 (324)
145 3pvs_A Replication-associated 99.1 1.9E-10 6.5E-15 112.9 9.5 102 201-347 16-120 (447)
146 1hqc_A RUVB; extended AAA-ATPa 99.1 4.5E-10 1.5E-14 105.3 11.5 70 204-281 5-74 (324)
147 1ofh_A ATP-dependent HSL prote 99.1 6.5E-11 2.2E-15 110.2 3.9 73 5-80 54-133 (310)
148 1um8_A ATP-dependent CLP prote 99.0 1.5E-10 5.1E-15 111.2 6.2 76 5-80 76-154 (376)
149 1qvr_A CLPB protein; coiled co 99.0 7.7E-10 2.6E-14 117.3 11.6 105 203-349 162-279 (854)
150 4aby_A DNA repair protein RECN 99.0 1.1E-10 3.9E-15 113.5 4.2 45 318-372 296-344 (415)
151 2vf7_A UVRA2, excinuclease ABC 99.0 2E-10 6.8E-15 120.0 6.2 57 311-377 724-785 (842)
152 3n70_A Transport activator; si 99.0 8.9E-11 3E-15 97.3 2.9 59 5-76 28-89 (145)
153 4fcw_A Chaperone protein CLPB; 99.0 1.5E-09 5.3E-14 101.0 11.7 68 212-283 18-88 (311)
154 1jbk_A CLPB protein; beta barr 99.0 1.6E-10 5.5E-15 99.1 4.6 73 4-78 46-130 (195)
155 3co5_A Putative two-component 99.0 4.5E-11 1.6E-15 98.9 1.0 59 5-77 31-89 (143)
156 2p65_A Hypothetical protein PF 99.0 1.1E-10 3.6E-15 99.9 3.3 73 4-78 46-130 (187)
157 1r6b_X CLPA protein; AAA+, N-t 99.0 9.3E-10 3.2E-14 115.3 10.5 103 205-349 180-294 (758)
158 1sxj_E Activator 1 40 kDa subu 99.0 1.7E-09 5.7E-14 102.7 11.2 59 201-271 4-63 (354)
159 1l8q_A Chromosomal replication 99.0 8.7E-10 3E-14 103.6 8.9 65 206-281 6-76 (324)
160 2r6f_A Excinuclease ABC subuni 99.0 4.8E-10 1.6E-14 117.6 7.3 58 310-377 838-900 (972)
161 2ygr_A Uvrabc system protein A 99.0 4.9E-10 1.7E-14 117.9 7.2 58 310-377 856-918 (993)
162 1in4_A RUVB, holliday junction 98.9 2.8E-09 9.7E-14 100.7 10.8 71 202-280 16-86 (334)
163 3pxg_A Negative regulator of g 98.9 1.4E-10 4.9E-15 114.6 1.9 63 2-70 202-274 (468)
164 2chg_A Replication factor C sm 98.9 3.2E-09 1.1E-13 93.0 10.0 65 203-280 9-78 (226)
165 2kjq_A DNAA-related protein; s 98.9 1.5E-09 5.2E-14 90.3 6.9 40 244-283 35-77 (149)
166 3m6a_A ATP-dependent protease 98.9 2.2E-10 7.5E-15 115.3 2.0 70 5-78 112-190 (543)
167 1sxj_D Activator 1 41 kDa subu 98.9 2.3E-09 7.9E-14 101.5 8.9 69 200-281 26-100 (353)
168 3pih_A Uvrabc system protein A 98.9 1.7E-09 5.8E-14 113.9 8.4 57 311-377 799-860 (916)
169 2bjv_A PSP operon transcriptio 98.9 2.2E-09 7.5E-14 97.8 8.1 64 208-282 3-69 (265)
170 4akg_A Glutathione S-transfera 98.9 8.8E-09 3E-13 118.7 14.4 85 243-369 1607-1692(2695)
171 3uk6_A RUVB-like 2; hexameric 98.9 5.8E-10 2E-14 106.5 3.8 40 5-44 74-115 (368)
172 3te6_A Regulatory protein SIR3 98.9 4.6E-10 1.6E-14 104.9 3.0 69 5-76 49-145 (318)
173 3te6_A Regulatory protein SIR3 98.9 2.8E-09 9.5E-14 99.6 8.0 62 213-283 22-93 (318)
174 2z4s_A Chromosomal replication 98.9 4.4E-09 1.5E-13 103.1 9.4 37 245-281 130-171 (440)
175 2v1u_A Cell division control p 98.9 1.3E-08 4.5E-13 97.2 12.0 62 211-281 19-89 (387)
176 3qf7_A RAD50; ABC-ATPase, ATPa 98.9 1.6E-09 5.6E-14 103.5 5.6 55 313-377 275-337 (365)
177 1njg_A DNA polymerase III subu 98.8 2E-08 6.8E-13 89.0 11.6 58 202-271 14-71 (250)
178 3sop_A Neuronal-specific septi 98.8 3.9E-09 1.3E-13 96.7 6.9 95 247-361 4-131 (270)
179 1sxj_C Activator 1 40 kDa subu 98.8 1.5E-08 5.2E-13 95.8 11.1 68 200-280 14-86 (340)
180 3pxg_A Negative regulator of g 98.8 4.5E-09 1.5E-13 103.9 7.6 81 204-300 173-263 (468)
181 1iqp_A RFCS; clamp loader, ext 98.8 1.7E-08 6E-13 94.2 11.3 67 201-280 15-86 (327)
182 3aez_A Pantothenate kinase; tr 98.8 3.7E-09 1.3E-13 98.8 6.4 98 242-346 87-207 (312)
183 2ehv_A Hypothetical protein PH 98.8 8.5E-10 2.9E-14 99.3 1.8 39 241-279 26-68 (251)
184 3b9q_A Chloroplast SRP recepto 98.8 9.6E-09 3.3E-13 95.5 8.9 108 239-360 94-237 (302)
185 1l8q_A Chromosomal replication 98.8 1.3E-09 4.5E-14 102.4 3.0 69 5-77 41-112 (324)
186 1sxj_B Activator 1 37 kDa subu 98.8 1.7E-08 5.8E-13 94.2 10.3 66 202-280 12-82 (323)
187 1tq4_A IIGP1, interferon-induc 98.8 8.8E-11 3E-15 113.6 -5.5 109 246-371 70-212 (413)
188 1e69_A Chromosome segregation 98.8 7.6E-09 2.6E-13 97.2 7.6 51 312-372 214-270 (322)
189 3pvs_A Replication-associated 98.8 3.5E-09 1.2E-13 103.9 5.2 66 5-77 54-120 (447)
190 3thx_B DNA mismatch repair pro 98.8 2.1E-09 7.2E-14 113.4 3.7 104 239-371 667-781 (918)
191 1sxj_A Activator 1 95 kDa subu 98.8 4.6E-10 1.6E-14 112.4 -1.2 73 5-77 81-162 (516)
192 2npi_A Protein CLP1; CLP1-PCF1 98.8 2.9E-10 9.9E-15 111.8 -2.9 122 238-371 131-287 (460)
193 1ojl_A Transcriptional regulat 98.8 1E-08 3.5E-13 95.5 7.4 61 212-283 3-66 (304)
194 2chq_A Replication factor C sm 98.8 1.3E-08 4.3E-13 94.9 7.8 67 201-280 7-78 (319)
195 3k1j_A LON protease, ATP-depen 98.7 4.6E-08 1.6E-12 99.7 12.5 60 204-278 34-96 (604)
196 1jr3_A DNA polymerase III subu 98.7 3.4E-08 1.1E-12 94.2 10.6 58 202-271 7-64 (373)
197 3bos_A Putative DNA replicatio 98.7 4.7E-08 1.6E-12 86.9 10.7 62 208-282 25-92 (242)
198 3pfi_A Holliday junction ATP-d 98.7 6.1E-09 2.1E-13 98.3 5.0 61 5-76 59-119 (338)
199 2og2_A Putative signal recogni 98.7 2E-08 6.9E-13 95.3 8.6 110 238-361 150-295 (359)
200 3pxi_A Negative regulator of g 98.7 1.2E-08 4.2E-13 106.7 7.6 81 204-300 173-263 (758)
201 1fnn_A CDC6P, cell division co 98.7 7E-08 2.4E-12 92.3 12.3 62 211-281 17-84 (389)
202 2eyu_A Twitching motility prot 98.7 1.2E-08 4.1E-13 92.9 6.3 43 238-280 18-63 (261)
203 2qby_A CDC6 homolog 1, cell di 98.7 4.1E-08 1.4E-12 93.7 9.6 61 211-280 20-86 (386)
204 2qby_B CDC6 homolog 3, cell di 98.7 2.9E-08 1E-12 95.0 8.5 62 211-281 20-92 (384)
205 1g8p_A Magnesium-chelatase 38 98.7 1.9E-08 6.4E-13 95.1 7.0 54 205-271 18-71 (350)
206 2i3b_A HCR-ntpase, human cance 98.7 1.2E-08 4.2E-13 88.2 4.8 116 245-370 1-134 (189)
207 2r44_A Uncharacterized protein 98.7 3.6E-08 1.2E-12 92.7 8.4 55 209-278 25-79 (331)
208 1z6g_A Guanylate kinase; struc 98.7 1.8E-09 6E-14 95.8 -0.7 32 238-269 16-47 (218)
209 3thx_A DNA mismatch repair pro 98.7 2E-08 7E-13 106.2 7.3 103 240-372 657-771 (934)
210 3nbx_X ATPase RAVA; AAA+ ATPas 98.7 2.4E-08 8.2E-13 99.0 7.3 45 212-271 23-67 (500)
211 4akg_A Glutathione S-transfera 98.7 3.4E-08 1.2E-12 113.9 9.2 60 5-74 649-708 (2695)
212 2z4s_A Chromosomal replication 98.7 5.8E-09 2E-13 102.2 2.4 70 5-77 134-208 (440)
213 4a74_A DNA repair and recombin 98.6 3.1E-08 1.1E-12 87.8 6.4 40 241-280 21-69 (231)
214 3u61_B DNA polymerase accessor 98.6 2.7E-08 9.3E-13 93.2 5.7 65 5-76 52-118 (324)
215 2bjv_A PSP operon transcriptio 98.6 7.7E-09 2.6E-13 94.2 1.6 66 5-76 33-113 (265)
216 1hqc_A RUVB; extended AAA-ATPa 98.6 1E-08 3.5E-13 96.0 2.3 62 5-76 42-103 (324)
217 1znw_A Guanylate kinase, GMP k 98.6 2.9E-09 9.9E-14 93.5 -1.6 31 240-270 15-45 (207)
218 2v9p_A Replication protein E1; 98.6 1.9E-08 6.5E-13 93.3 3.8 89 238-338 119-220 (305)
219 2pt7_A CAG-ALFA; ATPase, prote 98.6 3.2E-08 1.1E-12 93.2 4.7 80 239-341 165-248 (330)
220 1ojl_A Transcriptional regulat 98.6 8E-09 2.8E-13 96.3 0.4 65 5-76 29-109 (304)
221 2w0m_A SSO2452; RECA, SSPF, un 98.6 3.4E-08 1.2E-12 87.5 4.5 30 241-270 19-48 (235)
222 2wg5_A General control protein 98.6 6.4E-08 2.2E-12 75.5 5.4 98 105-202 10-107 (109)
223 1nlf_A Regulatory protein REPA 98.6 3.1E-08 1.1E-12 91.0 4.3 29 241-269 26-54 (279)
224 2jeo_A Uridine-cytidine kinase 98.5 2.7E-08 9.1E-13 89.7 3.3 107 238-346 18-146 (245)
225 1tf7_A KAIC; homohexamer, hexa 98.5 1.9E-08 6.4E-13 100.9 2.4 132 239-376 32-176 (525)
226 4fcw_A Chaperone protein CLPB; 98.5 2.3E-08 8E-13 92.9 2.8 67 5-76 51-132 (311)
227 2v1u_A Cell division control p 98.5 3.7E-08 1.3E-12 94.0 4.3 72 5-78 48-145 (387)
228 2cvh_A DNA repair and recombin 98.5 4.3E-07 1.5E-11 79.7 10.3 39 241-279 16-54 (220)
229 1pzn_A RAD51, DNA repair and r 98.5 6.8E-08 2.3E-12 91.7 5.2 43 239-281 125-176 (349)
230 3qkt_A DNA double-strand break 98.5 1.5E-07 5E-12 89.1 7.4 53 313-375 244-304 (339)
231 3jvv_A Twitching mobility prot 98.5 1.2E-07 3.9E-12 90.2 6.2 31 242-272 120-150 (356)
232 1tf7_A KAIC; homohexamer, hexa 98.5 2.3E-08 8E-13 100.2 1.3 118 240-376 276-408 (525)
233 2w58_A DNAI, primosome compone 98.5 2.6E-07 8.8E-12 80.3 7.7 34 246-279 55-91 (202)
234 1n0w_A DNA repair protein RAD5 98.5 3.4E-07 1.2E-11 81.7 8.5 40 241-280 20-68 (243)
235 2vhj_A Ntpase P4, P4; non- hyd 98.5 9.3E-08 3.2E-12 88.8 4.8 78 241-349 119-198 (331)
236 2gno_A DNA polymerase III, gam 98.5 6.2E-07 2.1E-11 83.4 10.2 102 215-370 1-108 (305)
237 3asz_A Uridine kinase; cytidin 98.5 2.1E-08 7.2E-13 87.9 0.1 30 242-271 3-32 (211)
238 1in4_A RUVB, holliday junction 98.4 1.1E-07 3.8E-12 89.7 4.3 62 5-77 55-116 (334)
239 2qby_B CDC6 homolog 3, cell di 98.4 9.6E-08 3.3E-12 91.3 3.6 70 5-78 49-148 (384)
240 3ec2_A DNA replication protein 98.4 3.3E-08 1.1E-12 84.5 0.1 66 5-75 42-112 (180)
241 1htw_A HI0065; nucleotide-bind 98.4 9.9E-08 3.4E-12 80.0 3.1 44 238-282 26-71 (158)
242 2w58_A DNAI, primosome compone 98.4 6E-08 2E-12 84.4 1.8 67 5-76 58-128 (202)
243 1cr0_A DNA primase/helicase; R 98.4 2.5E-07 8.4E-12 85.6 6.0 33 239-271 29-61 (296)
244 3nbx_X ATPase RAVA; AAA+ ATPas 98.4 3.8E-08 1.3E-12 97.6 0.3 71 3-75 43-121 (500)
245 3f9v_A Minichromosome maintena 98.4 1E-07 3.5E-12 96.8 2.7 62 212-275 296-357 (595)
246 2r44_A Uncharacterized protein 98.4 6.8E-08 2.3E-12 90.8 1.3 69 3-76 48-122 (331)
247 2ewv_A Twitching motility prot 98.4 3.6E-07 1.2E-11 87.4 6.1 35 237-271 128-162 (372)
248 2vhj_A Ntpase P4, P4; non- hyd 98.4 3E-07 1E-11 85.4 5.2 69 5-78 127-197 (331)
249 3bos_A Putative DNA replicatio 98.4 1.4E-07 4.9E-12 83.7 2.9 60 5-77 56-118 (242)
250 2qby_A CDC6 homolog 1, cell di 98.3 1.9E-07 6.6E-12 88.9 3.6 71 5-78 49-143 (386)
251 2chg_A Replication factor C sm 98.3 3.9E-07 1.3E-11 79.5 5.3 66 5-76 42-115 (226)
252 1wb9_A DNA mismatch repair pro 98.3 1.5E-07 5.1E-12 98.3 2.9 27 243-269 605-631 (800)
253 2kjq_A DNAA-related protein; s 98.3 1.6E-07 5.4E-12 78.0 2.4 53 6-76 41-96 (149)
254 2o8b_B DNA mismatch repair pro 98.3 3.4E-07 1.2E-11 98.0 4.7 101 245-373 789-899 (1022)
255 2obl_A ESCN; ATPase, hydrolase 98.3 2E-06 6.7E-11 81.4 9.3 115 240-372 66-208 (347)
256 1lw7_A Transcriptional regulat 98.3 1.2E-06 4.2E-11 83.5 7.9 37 237-273 160-198 (365)
257 1zp6_A Hypothetical protein AT 98.3 4E-07 1.4E-11 78.3 4.0 41 241-281 5-45 (191)
258 3szr_A Interferon-induced GTP- 98.3 9E-07 3.1E-11 90.1 7.0 104 248-371 48-180 (608)
259 1sxj_D Activator 1 41 kDa subu 98.3 3.1E-07 1.1E-11 86.7 3.3 67 5-77 62-147 (353)
260 1fnn_A CDC6P, cell division co 98.3 7.9E-07 2.7E-11 84.9 6.0 69 5-75 48-137 (389)
261 2qgz_A Helicase loader, putati 98.3 5.9E-07 2E-11 83.7 4.9 27 244-270 151-177 (308)
262 2yhs_A FTSY, cell division pro 98.3 1.5E-06 5.1E-11 85.3 7.7 44 238-281 286-331 (503)
263 1a5t_A Delta prime, HOLB; zinc 98.2 7.9E-06 2.7E-10 76.9 12.3 43 216-270 7-49 (334)
264 1vma_A Cell division protein F 98.2 2.5E-06 8.6E-11 79.2 8.0 42 240-281 99-142 (306)
265 1ewq_A DNA mismatch repair pro 98.2 1.3E-07 4.3E-12 98.3 -0.9 29 240-269 572-600 (765)
266 1iqp_A RFCS; clamp loader, ext 98.2 7E-07 2.4E-11 83.2 4.3 66 5-76 50-123 (327)
267 2dpy_A FLII, flagellum-specifi 98.2 1.2E-06 4.2E-11 85.4 6.1 115 240-373 152-296 (438)
268 3vkg_A Dynein heavy chain, cyt 98.2 1.3E-05 4.3E-10 93.6 15.3 276 8-368 611-1008(3245)
269 2chq_A Replication factor C sm 98.2 3.1E-07 1.1E-11 85.3 1.6 66 5-76 42-115 (319)
270 1g8p_A Magnesium-chelatase 38 98.2 1.5E-07 5E-12 88.9 -0.8 22 5-26 49-70 (350)
271 2bbw_A Adenylate kinase 4, AK4 98.2 2.4E-07 8.1E-12 83.4 0.2 27 244-270 26-52 (246)
272 1rj9_A FTSY, signal recognitio 98.2 3.4E-06 1.1E-10 78.3 7.8 38 244-281 101-140 (304)
273 1tue_A Replication protein E1; 98.2 1.1E-06 3.8E-11 76.2 4.2 33 241-273 54-86 (212)
274 2qgz_A Helicase loader, putati 98.2 2E-07 6.9E-12 86.9 -0.5 66 5-75 156-226 (308)
275 1sxj_B Activator 1 37 kDa subu 98.1 9.1E-07 3.1E-11 82.3 3.6 66 5-76 46-120 (323)
276 1njg_A DNA polymerase III subu 98.1 9.6E-07 3.3E-11 77.9 3.2 66 5-76 49-139 (250)
277 1w5s_A Origin recognition comp 98.1 1.3E-05 4.5E-10 77.0 11.3 51 211-269 22-76 (412)
278 1odf_A YGR205W, hypothetical 3 98.1 1.4E-06 4.9E-11 80.3 4.3 30 242-271 28-57 (290)
279 3h43_A Proteasome-activating n 98.1 2.4E-06 8.1E-11 63.3 4.4 75 117-191 3-77 (85)
280 3lda_A DNA repair protein RAD5 98.1 4.3E-06 1.5E-10 80.5 7.3 40 241-280 174-222 (400)
281 1pui_A ENGB, probable GTP-bind 98.1 1.2E-06 4.1E-11 76.3 3.0 32 238-269 19-50 (210)
282 3tr0_A Guanylate kinase, GMP k 98.1 1.9E-06 6.7E-11 74.7 4.2 31 240-270 2-32 (205)
283 1ls1_A Signal recognition part 98.1 1.7E-05 5.8E-10 73.3 10.4 39 243-281 96-136 (295)
284 2zr9_A Protein RECA, recombina 98.1 4.9E-06 1.7E-10 78.8 6.9 40 240-279 56-98 (349)
285 3e70_C DPA, signal recognition 98.1 7.2E-06 2.4E-10 76.9 7.8 41 241-281 125-167 (328)
286 3f9v_A Minichromosome maintena 98.0 2.7E-07 9.3E-12 93.6 -2.8 68 3-76 329-404 (595)
287 3vaa_A Shikimate kinase, SK; s 98.0 2.6E-06 9E-11 73.9 3.7 40 238-277 18-57 (199)
288 1jr3_A DNA polymerase III subu 98.0 1.7E-06 5.8E-11 82.2 2.5 66 5-76 42-132 (373)
289 2qnr_A Septin-2, protein NEDD5 98.0 1.2E-05 4.2E-10 74.5 8.2 37 313-361 109-146 (301)
290 3hr8_A Protein RECA; alpha and 98.0 1.5E-05 5.3E-10 75.3 8.8 41 241-281 57-100 (356)
291 2gza_A Type IV secretion syste 98.0 3.3E-06 1.1E-10 80.4 4.2 42 238-279 168-211 (361)
292 1sxj_C Activator 1 40 kDa subu 98.0 3E-06 1E-10 79.9 3.8 66 5-76 50-123 (340)
293 3c8u_A Fructokinase; YP_612366 98.0 5.3E-06 1.8E-10 72.5 5.1 40 242-281 19-63 (208)
294 2oap_1 GSPE-2, type II secreti 98.0 2.7E-06 9.1E-11 84.6 3.5 41 240-280 255-297 (511)
295 3cmu_A Protein RECA, recombina 98.0 4.2E-06 1.4E-10 94.0 5.1 71 5-78 1431-1520(2050)
296 2gno_A DNA polymerase III, gam 98.0 4.7E-06 1.6E-10 77.4 4.6 66 5-76 22-95 (305)
297 2r2a_A Uncharacterized protein 97.9 1.5E-06 5.1E-11 75.6 0.7 71 5-79 9-103 (199)
298 1qhx_A CPT, protein (chloramph 97.9 4.9E-06 1.7E-10 70.4 3.6 33 5-37 7-39 (178)
299 2qen_A Walker-type ATPase; unk 97.9 3E-05 1E-09 72.6 9.3 53 209-278 10-62 (350)
300 4eun_A Thermoresistant glucoki 97.9 6.3E-06 2.2E-10 71.5 4.0 39 241-281 25-63 (200)
301 1a5t_A Delta prime, HOLB; zinc 97.9 7.4E-06 2.5E-10 77.1 4.7 69 5-76 28-121 (334)
302 1svm_A Large T antigen; AAA+ f 97.9 7.2E-06 2.5E-10 78.3 4.6 38 239-276 163-200 (377)
303 1kag_A SKI, shikimate kinase I 97.9 8.8E-06 3E-10 68.5 4.3 31 245-275 4-34 (173)
304 2fna_A Conserved hypothetical 97.9 5E-05 1.7E-09 71.2 9.9 55 209-280 11-65 (357)
305 3lnc_A Guanylate kinase, GMP k 97.8 4.3E-06 1.5E-10 74.2 1.6 33 238-270 20-53 (231)
306 2j41_A Guanylate kinase; GMP, 97.8 9.6E-06 3.3E-10 70.3 3.7 31 241-271 2-32 (207)
307 1ny5_A Transcriptional regulat 97.8 4.2E-05 1.4E-09 73.4 8.3 117 212-370 138-257 (387)
308 1s96_A Guanylate kinase, GMP k 97.8 1.1E-05 3.6E-10 71.3 3.7 31 241-271 12-42 (219)
309 1sxj_E Activator 1 40 kDa subu 97.8 1.2E-05 4.1E-10 75.9 4.3 21 5-25 40-60 (354)
310 2qm8_A GTPase/ATPase; G protei 97.8 2.6E-05 9.1E-10 73.4 6.3 40 239-278 49-90 (337)
311 3trf_A Shikimate kinase, SK; a 97.8 4.8E-06 1.6E-10 71.0 1.1 38 5-44 9-46 (185)
312 1lvg_A Guanylate kinase, GMP k 97.8 1E-05 3.6E-10 70.1 3.2 28 243-270 2-29 (198)
313 1w5s_A Origin recognition comp 97.8 1.8E-05 6.3E-10 76.0 5.2 68 7-77 58-152 (412)
314 3euj_A Chromosome partition pr 97.8 7.8E-06 2.7E-10 80.3 2.5 44 238-282 23-68 (483)
315 3a00_A Guanylate kinase, GMP k 97.7 1.3E-05 4.6E-10 68.6 3.3 27 245-271 1-27 (186)
316 2qag_C Septin-7; cell cycle, c 97.7 7.8E-05 2.7E-09 72.1 8.8 23 248-270 34-56 (418)
317 3uie_A Adenylyl-sulfate kinase 97.7 1.2E-05 4.1E-10 69.7 2.8 41 241-281 21-64 (200)
318 1f2t_B RAD50 ABC-ATPase; DNA d 97.7 1.6E-05 5.5E-10 65.6 3.3 54 312-375 52-113 (148)
319 1knq_A Gluconate kinase; ALFA/ 97.7 2.1E-05 7E-10 66.4 4.0 36 244-281 7-42 (175)
320 1ny5_A Transcriptional regulat 97.7 6.9E-06 2.4E-10 78.9 1.1 65 5-76 164-244 (387)
321 2px0_A Flagellar biosynthesis 97.7 0.00013 4.3E-09 67.4 9.5 29 243-271 103-131 (296)
322 1xp8_A RECA protein, recombina 97.7 0.00013 4.3E-09 69.4 9.7 39 241-279 70-111 (366)
323 1p9r_A General secretion pathw 97.7 4.3E-05 1.5E-09 74.0 6.5 37 243-279 165-203 (418)
324 3kl4_A SRP54, signal recogniti 97.7 0.00015 5.2E-09 70.2 10.3 28 244-271 96-123 (433)
325 3vaa_A Shikimate kinase, SK; s 97.7 8.4E-06 2.9E-10 70.6 1.1 34 5-40 29-62 (199)
326 1qhx_A CPT, protein (chloramph 97.7 3.1E-05 1.1E-09 65.4 4.6 33 245-277 3-35 (178)
327 1zu4_A FTSY; GTPase, signal re 97.7 7.5E-05 2.6E-09 69.7 7.5 43 239-281 99-143 (320)
328 1kgd_A CASK, peripheral plasma 97.7 2.4E-05 8.1E-10 66.7 3.7 27 244-270 4-30 (180)
329 3m9b_A Proteasome-associated A 97.7 0.00012 4E-09 64.4 8.1 101 90-192 56-156 (251)
330 1y63_A LMAJ004144AAA protein; 97.7 2.7E-05 9.3E-10 66.5 4.1 39 239-277 4-43 (184)
331 3k1j_A LON protease, ATP-depen 97.6 2.4E-05 8.1E-10 79.6 4.0 22 5-26 64-85 (604)
332 1u94_A RECA protein, recombina 97.6 0.0001 3.4E-09 69.9 7.7 39 241-279 59-100 (356)
333 3nwj_A ATSK2; P loop, shikimat 97.6 2.1E-05 7.3E-10 70.8 2.9 38 239-276 39-79 (250)
334 2r6a_A DNAB helicase, replicat 97.6 0.0002 6.8E-09 70.2 10.0 30 240-269 198-227 (454)
335 3tau_A Guanylate kinase, GMP k 97.6 3.2E-05 1.1E-09 67.5 3.8 29 243-271 6-34 (208)
336 2p5t_B PEZT; postsegregational 97.6 6.1E-05 2.1E-09 67.8 5.7 41 241-281 28-68 (253)
337 2rhm_A Putative kinase; P-loop 97.6 3.4E-05 1.2E-09 66.0 3.5 35 242-276 2-36 (193)
338 2dr3_A UPF0273 protein PH0284; 97.6 6.9E-05 2.4E-09 66.5 5.5 40 240-279 18-60 (247)
339 3a4m_A L-seryl-tRNA(SEC) kinas 97.6 4.3E-05 1.5E-09 69.2 4.2 48 5-52 8-61 (260)
340 1ye8_A Protein THEP1, hypothet 97.6 6.9E-05 2.3E-09 63.8 5.2 25 5-29 4-28 (178)
341 2bdt_A BH3686; alpha-beta prot 97.6 2.6E-05 8.8E-10 66.7 2.5 36 245-281 2-37 (189)
342 3trf_A Shikimate kinase, SK; a 97.6 3.9E-05 1.3E-09 65.2 3.6 33 245-277 5-37 (185)
343 2p5t_B PEZT; postsegregational 97.6 5.4E-05 1.9E-09 68.2 4.6 33 5-37 36-68 (253)
344 2r2a_A Uncharacterized protein 97.5 4.1E-05 1.4E-09 66.4 3.6 21 246-266 6-26 (199)
345 3iij_A Coilin-interacting nucl 97.5 5.5E-05 1.9E-09 64.1 4.3 36 242-277 8-43 (180)
346 1zuh_A Shikimate kinase; alpha 97.5 1.6E-05 5.4E-10 66.7 0.7 34 5-40 11-44 (168)
347 1ly1_A Polynucleotide kinase; 97.5 3.5E-05 1.2E-09 65.0 2.8 27 5-31 6-33 (181)
348 2pez_A Bifunctional 3'-phospho 97.5 5.4E-05 1.8E-09 64.1 4.0 39 243-281 3-44 (179)
349 1via_A Shikimate kinase; struc 97.5 2.6E-05 8.8E-10 65.9 1.8 27 5-31 8-34 (175)
350 1kag_A SKI, shikimate kinase I 97.5 3.2E-05 1.1E-09 65.0 2.3 26 5-30 8-33 (173)
351 1aky_A Adenylate kinase; ATP:A 97.5 3.6E-05 1.2E-09 67.6 2.7 28 5-32 8-35 (220)
352 3dzd_A Transcriptional regulat 97.5 0.00043 1.5E-08 65.9 10.3 62 212-284 130-193 (368)
353 1v5w_A DMC1, meiotic recombina 97.5 0.00023 8E-09 67.0 8.2 28 241-268 118-145 (343)
354 3kb2_A SPBC2 prophage-derived 97.5 6.2E-05 2.1E-09 62.9 3.8 31 247-277 3-33 (173)
355 3kb2_A SPBC2 prophage-derived 97.5 2.6E-05 8.9E-10 65.3 1.4 33 5-39 5-37 (173)
356 2ze6_A Isopentenyl transferase 97.5 0.00012 4E-09 66.0 5.9 30 5-34 5-34 (253)
357 3kta_A Chromosome segregation 97.5 4.9E-05 1.7E-09 64.5 2.9 32 239-271 21-52 (182)
358 1sq5_A Pantothenate kinase; P- 97.5 6.1E-05 2.1E-09 70.0 3.8 29 242-270 77-105 (308)
359 3t61_A Gluconokinase; PSI-biol 97.5 7E-05 2.4E-09 64.8 3.9 32 245-276 18-49 (202)
360 1cke_A CK, MSSA, protein (cyti 97.5 7.7E-05 2.6E-09 65.6 4.2 30 245-274 5-34 (227)
361 3io5_A Recombination and repai 97.5 0.00039 1.3E-08 64.3 8.9 40 240-280 24-68 (333)
362 1u0j_A DNA replication protein 97.4 1.1E-05 3.7E-10 73.0 -1.5 23 5-27 108-130 (267)
363 1gvn_B Zeta; postsegregational 97.4 0.00015 5.2E-09 66.5 6.2 36 243-278 31-66 (287)
364 3be4_A Adenylate kinase; malar 97.4 7E-05 2.4E-09 65.7 3.7 28 5-32 9-36 (217)
365 2fna_A Conserved hypothetical 97.4 5.9E-05 2E-09 70.7 3.4 32 5-36 34-65 (357)
366 4e22_A Cytidylate kinase; P-lo 97.4 8.5E-05 2.9E-09 66.9 4.3 30 243-272 25-54 (252)
367 2qt1_A Nicotinamide riboside k 97.4 7.9E-05 2.7E-09 64.7 3.9 37 241-277 17-54 (207)
368 1via_A Shikimate kinase; struc 97.4 6.9E-05 2.4E-09 63.2 3.5 30 247-276 6-35 (175)
369 3cm0_A Adenylate kinase; ATP-b 97.4 6.9E-05 2.4E-09 63.7 3.4 32 244-275 3-34 (186)
370 3dzd_A Transcriptional regulat 97.4 8.8E-05 3E-09 70.7 4.4 65 5-76 156-235 (368)
371 2qag_B Septin-6, protein NEDD5 97.4 5.7E-05 2E-09 73.0 3.1 32 238-269 33-66 (427)
372 1zp6_A Hypothetical protein AT 97.4 3.8E-05 1.3E-09 65.7 1.6 33 5-37 13-45 (191)
373 2iyv_A Shikimate kinase, SK; t 97.4 3.1E-05 1.1E-09 65.9 1.0 27 5-31 6-32 (184)
374 1qhl_A Protein (cell division 97.4 8.3E-06 2.8E-10 72.3 -2.8 36 246-281 28-65 (227)
375 2z43_A DNA repair and recombin 97.4 0.00018 6.2E-09 67.2 6.2 29 241-269 103-131 (324)
376 1y63_A LMAJ004144AAA protein; 97.4 4E-05 1.4E-09 65.4 1.4 28 5-32 14-42 (184)
377 3umf_A Adenylate kinase; rossm 97.4 0.00012 4.1E-09 64.3 4.3 37 238-274 22-58 (217)
378 2ga8_A Hypothetical 39.9 kDa p 97.4 0.0001 3.5E-09 69.3 4.1 34 242-275 19-54 (359)
379 1n0w_A DNA repair protein RAD5 97.4 0.00016 5.3E-09 64.1 5.1 32 5-36 28-68 (243)
380 3dm5_A SRP54, signal recogniti 97.4 0.0012 4.1E-08 64.0 11.6 27 244-270 99-125 (443)
381 1gvn_B Zeta; postsegregational 97.4 0.00013 4.3E-09 67.1 4.4 33 5-37 37-69 (287)
382 3ney_A 55 kDa erythrocyte memb 97.4 0.00011 3.9E-09 63.4 3.8 32 239-270 13-44 (197)
383 2ze6_A Isopentenyl transferase 97.4 0.00011 3.8E-09 66.2 3.9 32 247-278 3-34 (253)
384 2qen_A Walker-type ATPase; unk 97.4 0.00013 4.4E-09 68.2 4.5 28 5-34 35-62 (350)
385 2iyv_A Shikimate kinase, SK; t 97.3 0.0001 3.6E-09 62.5 3.5 32 246-277 3-34 (184)
386 2if2_A Dephospho-COA kinase; a 97.3 9E-05 3.1E-09 64.1 3.2 30 247-277 3-32 (204)
387 1jjv_A Dephospho-COA kinase; P 97.3 0.00011 3.7E-09 63.7 3.6 28 247-275 4-31 (206)
388 2c95_A Adenylate kinase 1; tra 97.3 0.00011 3.7E-09 62.9 3.5 33 244-276 8-40 (196)
389 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 0.0011 3.6E-08 59.8 10.2 37 245-281 4-43 (260)
390 1udx_A The GTP-binding protein 97.3 0.00013 4.4E-09 70.5 4.3 102 238-343 150-280 (416)
391 1tev_A UMP-CMP kinase; ploop, 97.3 0.00011 3.9E-09 62.6 3.5 32 245-276 3-34 (196)
392 1aky_A Adenylate kinase; ATP:A 97.3 0.00013 4.3E-09 64.1 3.9 33 244-276 3-35 (220)
393 3iij_A Coilin-interacting nucl 97.3 5.4E-05 1.8E-09 64.2 1.3 28 5-32 15-42 (180)
394 2qor_A Guanylate kinase; phosp 97.3 0.00014 4.7E-09 63.1 3.9 30 241-270 8-37 (204)
395 2cdn_A Adenylate kinase; phosp 97.3 0.00014 4.7E-09 62.9 3.8 33 244-276 19-51 (201)
396 1kht_A Adenylate kinase; phosp 97.3 0.0001 3.5E-09 62.7 3.0 26 245-270 3-28 (192)
397 3lw7_A Adenylate kinase relate 97.3 0.00013 4.3E-09 61.0 3.5 29 247-276 3-31 (179)
398 2cdn_A Adenylate kinase; phosp 97.3 5.3E-05 1.8E-09 65.5 1.0 28 5-32 24-51 (201)
399 1e6c_A Shikimate kinase; phosp 97.3 5.8E-05 2E-09 63.3 1.2 27 5-31 6-32 (173)
400 3cm0_A Adenylate kinase; ATP-b 97.3 6.5E-05 2.2E-09 63.9 1.5 32 5-38 8-39 (186)
401 1ly1_A Polynucleotide kinase; 97.3 0.00014 4.9E-09 61.1 3.7 29 246-274 3-32 (181)
402 2ga8_A Hypothetical 39.9 kDa p 97.3 2.5E-05 8.6E-10 73.5 -1.2 48 5-55 28-93 (359)
403 1qf9_A UMP/CMP kinase, protein 97.3 0.00015 5E-09 61.8 3.7 32 245-276 6-37 (194)
404 3lw7_A Adenylate kinase relate 97.3 6.6E-05 2.2E-09 62.7 1.4 27 5-32 5-31 (179)
405 2c95_A Adenylate kinase 1; tra 97.3 5.3E-05 1.8E-09 64.9 0.8 28 5-32 13-40 (196)
406 2rhm_A Putative kinase; P-loop 97.3 4.9E-05 1.7E-09 65.0 0.5 27 5-31 9-35 (193)
407 1zd8_A GTP:AMP phosphotransfer 97.3 0.00014 4.8E-09 64.1 3.4 33 244-276 6-38 (227)
408 2zr9_A Protein RECA, recombina 97.3 0.0002 6.9E-09 67.6 4.7 70 5-77 65-153 (349)
409 1jjv_A Dephospho-COA kinase; P 97.3 9.6E-05 3.3E-09 64.0 2.3 31 5-38 6-36 (206)
410 1zuh_A Shikimate kinase; alpha 97.2 0.00015 5.1E-09 60.6 3.4 31 247-277 9-39 (168)
411 1tev_A UMP-CMP kinase; ploop, 97.2 7.1E-05 2.4E-09 63.9 1.3 32 5-38 7-38 (196)
412 3dl0_A Adenylate kinase; phosp 97.2 6.9E-05 2.3E-09 65.5 1.2 28 5-32 4-31 (216)
413 2bwj_A Adenylate kinase 5; pho 97.2 0.00015 5.2E-09 62.2 3.3 32 245-276 12-43 (199)
414 2vli_A Antibiotic resistance p 97.2 0.00014 4.9E-09 61.4 3.1 30 245-274 5-34 (183)
415 2grj_A Dephospho-COA kinase; T 97.2 9.2E-05 3.1E-09 63.8 1.8 46 6-53 17-62 (192)
416 1rz3_A Hypothetical protein rb 97.2 0.00016 5.3E-09 62.7 3.3 29 242-270 19-47 (201)
417 1e6c_A Shikimate kinase; phosp 97.2 0.00018 6.2E-09 60.2 3.6 30 247-276 4-33 (173)
418 2cvh_A DNA repair and recombin 97.2 0.00025 8.5E-09 61.7 4.5 32 5-36 24-55 (220)
419 2bwj_A Adenylate kinase 5; pho 97.2 6.8E-05 2.3E-09 64.4 0.8 32 5-38 16-47 (199)
420 2vp4_A Deoxynucleoside kinase; 97.2 0.00014 4.9E-09 64.3 2.9 30 239-268 14-43 (230)
421 1ak2_A Adenylate kinase isoenz 97.2 8.4E-05 2.9E-09 65.9 1.3 28 5-32 20-47 (233)
422 1kht_A Adenylate kinase; phosp 97.2 6.7E-05 2.3E-09 63.9 0.6 22 5-26 7-28 (192)
423 1ukz_A Uridylate kinase; trans 97.2 0.00024 8.2E-09 61.3 4.1 33 244-276 14-46 (203)
424 3fb4_A Adenylate kinase; psych 97.2 7.9E-05 2.7E-09 65.0 1.0 28 5-32 4-31 (216)
425 2vli_A Antibiotic resistance p 97.2 7.5E-05 2.6E-09 63.2 0.8 26 5-30 9-34 (183)
426 1zd8_A GTP:AMP phosphotransfer 97.2 8.1E-05 2.8E-09 65.7 1.0 28 5-32 11-38 (227)
427 2v54_A DTMP kinase, thymidylat 97.2 0.00013 4.5E-09 62.8 2.4 29 5-33 8-37 (204)
428 1u0l_A Probable GTPase ENGC; p 97.2 0.00018 6.1E-09 66.5 3.3 33 244-276 168-202 (301)
429 2vf7_A UVRA2, excinuclease ABC 97.2 0.00014 4.7E-09 76.2 2.7 66 302-377 363-433 (842)
430 2pt5_A Shikimate kinase, SK; a 97.2 8.6E-05 2.9E-09 62.0 1.0 34 5-40 4-37 (168)
431 2v54_A DTMP kinase, thymidylat 97.2 0.00031 1.1E-08 60.5 4.5 33 244-276 3-36 (204)
432 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00038 1.3E-08 61.0 5.2 21 5-25 27-47 (235)
433 1qf9_A UMP/CMP kinase, protein 97.2 8.2E-05 2.8E-09 63.4 0.8 28 5-32 10-37 (194)
434 1ukz_A Uridylate kinase; trans 97.2 0.00011 3.7E-09 63.5 1.5 28 5-32 19-46 (203)
435 3tlx_A Adenylate kinase 2; str 97.1 0.00024 8.1E-09 63.6 3.8 34 243-276 27-60 (243)
436 1zak_A Adenylate kinase; ATP:A 97.1 0.00016 5.4E-09 63.5 2.5 32 244-275 4-35 (222)
437 1u0j_A DNA replication protein 97.1 0.00024 8.1E-09 64.2 3.7 27 243-269 102-128 (267)
438 3t61_A Gluconokinase; PSI-biol 97.1 0.00011 3.6E-09 63.6 1.3 27 5-31 22-48 (202)
439 2yvu_A Probable adenylyl-sulfa 97.1 0.00021 7E-09 60.9 3.2 33 5-37 17-52 (186)
440 2if2_A Dephospho-COA kinase; a 97.1 0.00016 5.3E-09 62.5 2.4 33 5-40 5-37 (204)
441 3dl0_A Adenylate kinase; phosp 97.1 0.00022 7.5E-09 62.2 3.4 30 247-276 2-31 (216)
442 3umf_A Adenylate kinase; rossm 97.1 0.00022 7.6E-09 62.6 3.3 33 5-39 33-65 (217)
443 3sr0_A Adenylate kinase; phosp 97.1 0.00028 9.5E-09 61.5 3.9 29 247-275 2-30 (206)
444 3kta_B Chromosome segregation 97.1 0.00034 1.2E-08 59.2 4.3 51 313-373 60-116 (173)
445 3fb4_A Adenylate kinase; psych 97.1 0.00022 7.7E-09 62.1 3.3 30 247-276 2-31 (216)
446 3be4_A Adenylate kinase; malar 97.1 0.0002 6.7E-09 62.8 2.9 32 245-276 5-36 (217)
447 2pt5_A Shikimate kinase, SK; a 97.1 0.00024 8.3E-09 59.2 3.4 30 247-276 2-31 (168)
448 3tqc_A Pantothenate kinase; bi 97.1 0.00028 9.5E-09 65.7 4.0 27 244-270 91-117 (321)
449 1zak_A Adenylate kinase; ATP:A 97.1 6.6E-05 2.3E-09 66.0 -0.3 33 5-39 9-41 (222)
450 1ak2_A Adenylate kinase isoenz 97.1 0.0003 1E-08 62.3 4.0 32 245-276 16-47 (233)
451 2jaq_A Deoxyguanosine kinase; 97.1 0.00029 9.8E-09 60.6 3.8 29 247-275 2-30 (205)
452 1knq_A Gluconate kinase; ALFA/ 97.1 0.00014 4.8E-09 61.2 1.7 32 5-38 12-43 (175)
453 2f1r_A Molybdopterin-guanine d 97.1 0.0001 3.5E-09 62.3 0.8 36 246-281 3-43 (171)
454 3uie_A Adenylyl-sulfate kinase 97.1 0.00019 6.5E-09 62.0 2.5 33 5-37 29-64 (200)
455 3nwj_A ATSK2; P loop, shikimat 97.1 0.00013 4.3E-09 65.7 1.4 28 5-32 52-79 (250)
456 3hr8_A Protein RECA; alpha and 97.1 0.00049 1.7E-08 65.0 5.5 70 5-77 65-153 (356)
457 3f8t_A Predicted ATPase involv 97.1 0.00042 1.4E-08 67.4 5.1 51 213-272 215-266 (506)
458 4eun_A Thermoresistant glucoki 97.1 0.00015 5.1E-09 62.7 1.8 30 6-37 34-63 (200)
459 1svm_A Large T antigen; AAA+ f 97.1 0.00016 5.6E-09 68.9 2.1 58 5-77 173-230 (377)
460 3r20_A Cytidylate kinase; stru 97.1 0.00033 1.1E-08 62.1 4.0 30 245-274 9-38 (233)
461 2z0h_A DTMP kinase, thymidylat 97.1 0.00032 1.1E-08 60.0 3.8 30 5-34 4-36 (197)
462 1tue_A Replication protein E1; 97.1 7.8E-05 2.7E-09 64.6 -0.2 26 5-30 62-87 (212)
463 2jaq_A Deoxyguanosine kinase; 97.1 0.00015 5.1E-09 62.4 1.5 26 5-30 4-29 (205)
464 2yvu_A Probable adenylyl-sulfa 97.1 0.00031 1.1E-08 59.7 3.6 30 242-271 10-39 (186)
465 2i1q_A DNA repair and recombin 97.1 0.00067 2.3E-08 63.1 6.1 28 241-268 94-121 (322)
466 1q3t_A Cytidylate kinase; nucl 97.1 0.00038 1.3E-08 61.7 4.2 34 242-275 13-46 (236)
467 3sr0_A Adenylate kinase; phosp 97.1 0.00016 5.6E-09 63.0 1.7 32 5-38 4-35 (206)
468 3pih_A Uvrabc system protein A 97.0 0.0003 1E-08 74.3 3.8 64 304-377 450-518 (916)
469 1j8m_F SRP54, signal recogniti 97.0 0.0013 4.4E-08 60.6 7.7 26 245-270 98-123 (297)
470 2plr_A DTMP kinase, probable t 97.0 0.0003 1E-08 60.8 3.2 27 245-271 4-30 (213)
471 1e4v_A Adenylate kinase; trans 97.0 0.00011 3.9E-09 64.1 0.5 28 5-32 4-31 (214)
472 2q6t_A DNAB replication FORK h 97.0 0.0034 1.2E-07 61.1 11.0 28 241-268 196-223 (444)
473 1cke_A CK, MSSA, protein (cyti 97.0 0.00022 7.5E-09 62.6 2.1 26 5-30 9-34 (227)
474 1m7g_A Adenylylsulfate kinase; 97.0 0.00033 1.1E-08 61.0 3.2 42 240-281 20-65 (211)
475 1vht_A Dephospho-COA kinase; s 97.0 0.00046 1.6E-08 60.3 4.2 31 245-276 4-34 (218)
476 3crm_A TRNA delta(2)-isopenten 97.0 0.00022 7.4E-09 66.4 2.1 34 5-38 9-42 (323)
477 2rcn_A Probable GTPase ENGC; Y 97.0 0.00032 1.1E-08 66.2 3.3 29 244-272 214-243 (358)
478 3tlx_A Adenylate kinase 2; str 97.0 0.00017 5.7E-09 64.5 1.3 27 5-31 33-59 (243)
479 1m7g_A Adenylylsulfate kinase; 97.0 0.00028 9.5E-09 61.5 2.7 33 5-37 29-65 (211)
480 3crm_A TRNA delta(2)-isopenten 97.0 0.00051 1.8E-08 63.8 4.4 34 246-279 6-39 (323)
481 2ffh_A Protein (FFH); SRP54, s 97.0 0.0018 6.1E-08 62.6 8.3 31 241-271 94-124 (425)
482 2xb4_A Adenylate kinase; ATP-b 97.0 0.00022 7.5E-09 62.8 1.8 33 5-39 4-36 (223)
483 3bh0_A DNAB-like replicative h 97.0 0.0034 1.2E-07 58.3 9.9 28 241-268 64-91 (315)
484 1nks_A Adenylate kinase; therm 97.0 0.00013 4.6E-09 62.0 0.2 22 5-26 5-26 (194)
485 3gmt_A Adenylate kinase; ssgci 97.0 0.00034 1.2E-08 61.9 2.8 33 5-39 12-44 (230)
486 2pez_A Bifunctional 3'-phospho 96.9 0.00018 6.3E-09 60.8 1.0 32 5-36 9-43 (179)
487 2plr_A DTMP kinase, probable t 96.9 0.00039 1.3E-08 60.1 3.2 23 5-27 8-30 (213)
488 2pbr_A DTMP kinase, thymidylat 96.9 0.00024 8.1E-09 60.6 1.7 29 5-33 4-35 (195)
489 1t9h_A YLOQ, probable GTPase E 96.9 0.00012 4E-09 67.9 -0.3 32 241-272 169-200 (307)
490 1e4v_A Adenylate kinase; trans 96.9 0.00037 1.3E-08 60.7 2.9 30 247-276 2-31 (214)
491 2pbr_A DTMP kinase, thymidylat 96.9 0.00059 2E-08 58.0 4.0 31 247-277 2-35 (195)
492 1uf9_A TT1252 protein; P-loop, 96.9 0.00048 1.6E-08 59.1 3.5 31 245-276 8-38 (203)
493 4eaq_A DTMP kinase, thymidylat 96.9 0.00053 1.8E-08 60.7 3.7 30 242-271 23-52 (229)
494 1nks_A Adenylate kinase; therm 96.9 0.00036 1.2E-08 59.3 2.5 24 247-270 3-26 (194)
495 4a74_A DNA repair and recombin 96.9 0.00064 2.2E-08 59.5 4.1 32 5-36 29-69 (231)
496 3ake_A Cytidylate kinase; CMP 96.9 0.00054 1.8E-08 59.0 3.6 30 247-276 4-33 (208)
497 1ltq_A Polynucleotide kinase; 96.9 0.00051 1.7E-08 63.1 3.6 28 5-32 6-34 (301)
498 2xb4_A Adenylate kinase; ATP-b 96.9 0.00062 2.1E-08 59.9 4.0 30 247-276 2-31 (223)
499 1nn5_A Similar to deoxythymidy 96.9 0.00045 1.5E-08 59.9 3.0 29 242-270 6-34 (215)
500 2wwf_A Thymidilate kinase, put 96.9 0.00037 1.3E-08 60.4 2.4 29 243-271 8-36 (212)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.3e-51 Score=426.78 Aligned_cols=323 Identities=30% Similarity=0.511 Sum_probs=238.7
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
||.||||||||+|||++|++++++|+.|++++++++|+|++|+++|++|+.|+.++|| ||||||+|++++.+++...
T Consensus 242 LL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~Ps---IIfIDEiDal~~~r~~~~~ 318 (806)
T 3cf2_A 242 LLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA---IIFIDELDAIAPKREKTHG 318 (806)
T ss_dssp EEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSE---EEEEESGGGTCCTTTTCCC
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCe---EEEEehhcccccccCCCCC
Confidence 6789999999999999999999999999999999999999999999999999999999 9999999999988765443
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccccccccccccccc---cceeeccCCCce
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQR----NELNAKVRMLREELQLLQEQGSYVGEVVKPMDKK---KVLVKVHPEGKF 157 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~~----~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~---~~i~~~~~~~~~ 157 (378)
... ..+ +.++...+..+.... ....++++.++ +++++++||+..+...+|+. ..+++.+..+..
T Consensus 319 ~~~---~ri---v~~LL~~mdg~~~~~~V~VIaaTN~~d~LD---~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~ 389 (806)
T 3cf2_A 319 EVE---RRI---VSQLLTLMDGLKQRAHVIVMAATNRPNSID---PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK 389 (806)
T ss_dssp TTH---HHH---HHHHHTHHHHCCGGGCEEEEEECSSTTTSC---TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE
T ss_pred hHH---HHH---HHHHHHHHhcccccCCEEEEEecCChhhcC---HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC
Confidence 222 111 111111121111100 01123444555 67889999999999888874 456666655432
Q ss_pred eeecCccccccccCcc------------chhhc----c--------------------------cchhhhhhhcCCCCch
Q psy6098 158 VVDIDKNIDINDVTPN------------CRVAL----R--------------------------NESYTLHKILPNKVDP 195 (378)
Q Consensus 158 ~~~l~~~i~~~~l~~~------------~~~~~----~--------------------------~~~~~l~~i~~~~~~~ 195 (378)
+..+++...+... ++.+. . ++..++..+.|+.
T Consensus 390 ---~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~--- 463 (806)
T 3cf2_A 390 ---LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA--- 463 (806)
T ss_dssp ---ECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCC---
T ss_pred ---CCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcc---
Confidence 2334443332211 11110 0 0011111111111
Q ss_pred hhhhhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEE
Q psy6098 196 LVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 275 (378)
Q Consensus 196 ~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~ 275 (378)
.+.....+|.++|++++|+++++++|++.+.+|+++++.+..+++.++.++|||||||||||+++++||+.++.+++.
T Consensus 464 --~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~ 541 (806)
T 3cf2_A 464 --LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp --CCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEE
T ss_pred --cccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEE
Confidence 122344678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCC
Q psy6098 276 VSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSG 355 (378)
Q Consensus 276 ~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~ 355 (378)
++++++.++|+|++++.++++|..| +.+.||||||||||+|+++|+...++
T Consensus 542 v~~~~l~s~~vGese~~vr~lF~~A-----------------------------r~~~P~IifiDEiDsl~~~R~~~~~~ 592 (806)
T 3cf2_A 542 IKGPELLTMWFGESEANVREIFDKA-----------------------------RQAAPCVLFFDELDSIAKARGGNIGD 592 (806)
T ss_dssp CCHHHHHTTTCSSCHHHHHHHHHHH-----------------------------HTTCSEEEECSCGGGCC---------
T ss_pred eccchhhccccchHHHHHHHHHHHH-----------------------------HHcCCceeechhhhHHhhccCCCCCC
Confidence 9999999999999999999999999 78899999999999999999654333
Q ss_pred CChHHHHHHHHHHHhccCCCC
Q psy6098 356 GDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 356 ~d~~~~~~~~~lL~~l~~~~~ 376 (378)
.+....+.++++|.+|||+..
T Consensus 593 ~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 593 GGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp -----CHHHHHHHHHHHSSCS
T ss_pred CchHHHHHHHHHHHHHhCCCC
Confidence 444567889999999999864
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-42 Score=327.56 Aligned_cols=268 Identities=75% Similarity=1.187 Sum_probs=246.7
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccceeeccCCCceee
Q psy6098 80 EGFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVV 159 (378)
Q Consensus 80 ~g~~~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~~i~~~~~~~~~~~ 159 (378)
.|+..++...+.+++..+.......+++.+..+.+......+.+++..++.++.+++++.+.+++++.+++.+.+..+++
T Consensus 17 ~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~~~~v~~~~~~~~~~~~iv~~~~~~~~~v 96 (405)
T 4b4t_J 17 SGIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVSDKKVLVKVQPEGKYIV 96 (405)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECTTSCEEEEESSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEecCCeEEEEeCCCCEEEE
Confidence 45667777778888888888888888898888889999999999999999999999999999999999999999999999
Q ss_pred ecCccccccccCccchhhcccchhhhhhhcCCCCchhhhhhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhh
Q psy6098 160 DIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDA 239 (378)
Q Consensus 160 ~l~~~i~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~ 239 (378)
.+.+.++.+.+.+++++++.+..+.+..++|+..+|.+..+.++..|+++|+||+|++++|++|++.+.+|+.+|+.|..
T Consensus 97 ~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~ 176 (405)
T 4b4t_J 97 DVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFES 176 (405)
T ss_dssp CCCTTSCTTTCCSSCEEEEETTTCSCCEECCCCCSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHH
T ss_pred ecccccCHhhCCCcceeeeecccceeeeecCcccCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhh
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLT 319 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~ 319 (378)
+++.+++++|||||||||||++|+++|+.++.+++.++++++.++|+|++++.++++|..|
T Consensus 177 ~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~A------------------- 237 (405)
T 4b4t_J 177 LGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMA------------------- 237 (405)
T ss_dssp HTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHH-------------------
T ss_pred CCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHH-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 320 ILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 320 ~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
+...||||||||||+++++|....++.+....+.++++|.+|||+..
T Consensus 238 ----------r~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 238 ----------REHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp ----------HHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred ----------HHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 78899999999999999999776667777888999999999999865
No 3
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-37 Score=299.85 Aligned_cols=257 Identities=42% Similarity=0.722 Sum_probs=232.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccceeeccCCCceeeecCcccccccc
Q psy6098 91 EELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDV 170 (378)
Q Consensus 91 ~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~~i~~~~~~~~~~~~l~~~i~~~~l 170 (378)
..++.....+......+......+...+..++++++.++.++.+.+++.+.+++++++++.+.+..+++.+...++.+.+
T Consensus 52 k~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~~~~vg~~~e~~d~~~~iv~~~~~~~~~v~~~~~~~~~~~ 131 (428)
T 4b4t_K 52 KKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDRELL 131 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCEEEEEEEEEEETTEEEEEETTSCEEEECBCSSSCTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeeEEEEEccCCeeEEecCCCCEEEEeccccccHhhC
Confidence 44444444333344445555556667777888889999999999999999999999999999889999999999999999
Q ss_pred CccchhhcccchhhhhhhcCCCCchhhhhhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeE
Q psy6098 171 TPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLL 250 (378)
Q Consensus 171 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 250 (378)
.+++++++....+.+..++|...++.+..+.++..|+++|+||+|++++|++|++.+.+|+.+|+.+..+|+.+++++||
T Consensus 132 ~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL 211 (428)
T 4b4t_K 132 KPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLL 211 (428)
T ss_dssp CTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEE
T ss_pred CCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEE
Confidence 99999999998999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCchHHHHHHHhhhcCceEEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccc
Q psy6098 251 YGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFR 330 (378)
Q Consensus 251 ~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (378)
|||||||||+++++||+.++.+++.++++++.++|+|+++..++++|..| +
T Consensus 212 ~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A-----------------------------~ 262 (428)
T 4b4t_K 212 YGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLA-----------------------------R 262 (428)
T ss_dssp ESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHH-----------------------------H
T ss_pred ECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHH-----------------------------H
Confidence 99999999999999999999999999999999999999999999999999 7
Q ss_pred cCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 331 EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 331 ~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
.+.||||||||+|++++.|....++.+....+.+.++|.+|||+..
T Consensus 263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 263 ENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp HTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred HcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 7899999999999999999877777788888999999999998754
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-37 Score=298.91 Aligned_cols=236 Identities=44% Similarity=0.792 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccccccccccceeeccCCCceeeecCccccccccCccchhhcccchhhhhhhcCC
Q psy6098 112 NELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPN 191 (378)
Q Consensus 112 ~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~~i~~~~~~~~~~~~l~~~i~~~~l~~~~~~~~~~~~~~l~~i~~~ 191 (378)
..+........++++.++..+.+.+++.+.+++.+.+++.+.+..+++.+...++.+.+.+++++++....+.+..++|.
T Consensus 82 ~~l~~~~~~~~~~~~~l~~~~~~vg~~~~~~~~~~~iv~~~~g~~~~v~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~ 161 (437)
T 4b4t_L 82 RDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPR 161 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCEEEEEEEECSSSSCEEEEETTSCEEEECBCSSSCTTSCCTTCEEEECSSSCSEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhccCCceeeeheeeecCCcEEEEECCCCEEEEecccccCHhhcCCCceeeEcccchhHHHhcCc
Confidence 34555666777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 192 KVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
..+|.+..+.+...|+++|+||+|+++++++|++.+.+|+.+|+.|..+++.+++++|||||||||||+++++||+.++.
T Consensus 162 ~~d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~ 241 (437)
T 4b4t_L 162 ETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA 241 (437)
T ss_dssp CSCCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ccCchhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCC
Q psy6098 272 TFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIE 351 (378)
Q Consensus 272 ~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~ 351 (378)
+++.++++++.++|+|++++.++.+|..| +.+.||||||||||+++++|..
T Consensus 242 ~~~~v~~s~l~sk~~Gese~~ir~~F~~A-----------------------------~~~~P~IifiDEiDai~~~R~~ 292 (437)
T 4b4t_L 242 NFIFSPASGIVDKYIGESARIIREMFAYA-----------------------------KEHEPCIIFMDEVDAIGGRRFS 292 (437)
T ss_dssp EEEEEEGGGTCCSSSSHHHHHHHHHHHHH-----------------------------HHSCSEEEEEECCCSSSCCCSS
T ss_pred CEEEEehhhhccccchHHHHHHHHHHHHH-----------------------------HhcCCceeeeeccccccccccc
Confidence 99999999999999999999999999999 7789999999999999999977
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 352 SGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 352 ~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
...+.+....+.++++|.+|||+..
T Consensus 293 ~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 293 EGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp SCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred CCCCcchHHHHHHHHHHHHhhcccC
Confidence 6666777888899999999999865
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-37 Score=296.83 Aligned_cols=234 Identities=45% Similarity=0.825 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccccceeeccCCCceeeecCccccccccCccchhhcccchhhhhhhcCCCC
Q psy6098 114 LNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKV 193 (378)
Q Consensus 114 l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~~i~~~~~~~~~~~~l~~~i~~~~l~~~~~~~~~~~~~~l~~i~~~~~ 193 (378)
+.......+++++.++.++-.++++.+.+++++.+++.+.+..+++.+...++.+.+.+++++++.+..+.+..+++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~ 164 (437)
T 4b4t_I 85 FEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDA 164 (437)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEEEEECTTSEEEEECSSSCCCEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCS
T ss_pred HHHHHHHHHHHHHhhcCCCceeEEEEEEecCCEEEEEcCCCCEEEEecccccCHhHccCCcEEEEeccCccceeecCCcc
Confidence 34445556667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceE
Q psy6098 194 DPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTF 273 (378)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~ 273 (378)
|+.+..+.++..|+++|+||+|++++|++|++.+.+|+.+|+.|..+++.++++++||||||||||++|++||+.++.++
T Consensus 165 d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f 244 (437)
T 4b4t_I 165 DPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF 244 (437)
T ss_dssp SCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE
T ss_pred CCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCC
Q psy6098 274 IRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESG 353 (378)
Q Consensus 274 i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~ 353 (378)
+.++++++.++|+|++++.++++|..| +...||||||||||+++++|....
T Consensus 245 i~v~~s~l~sk~vGesek~ir~lF~~A-----------------------------r~~aP~IIfiDEiDai~~~R~~~~ 295 (437)
T 4b4t_I 245 LRIVGSELIQKYLGDGPRLCRQIFKVA-----------------------------GENAPSIVFIDEIDAIGTKRYDSN 295 (437)
T ss_dssp EEEESGGGCCSSSSHHHHHHHHHHHHH-----------------------------HHTCSEEEEEEEESSSSCCCSCSS
T ss_pred EEEEHHHhhhccCchHHHHHHHHHHHH-----------------------------HhcCCcEEEEehhhhhcccCCCCC
Confidence 999999999999999999999999999 778999999999999999998776
Q ss_pred CCCChHHHHHHHHHHHhccCCCC
Q psy6098 354 SGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 354 ~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
++.+....+.++++|.+||++..
T Consensus 296 ~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 296 SGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp CSSCCHHHHHHHHHHHHHHHCCC
T ss_pred CCccHHHHHHHHHHHHHhhCcCC
Confidence 77777888999999999998764
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=288.84 Aligned_cols=245 Identities=44% Similarity=0.744 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc--------------------------ccceeeccCCCc
Q psy6098 103 NLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDK--------------------------KKVLVKVHPEGK 156 (378)
Q Consensus 103 ~l~~l~~~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~--------------------------~~~i~~~~~~~~ 156 (378)
...++......+...+....+++...+..+.+++.+.+.++. ..++++.+.+..
T Consensus 47 e~~r~~~e~~~~~~~~~~~~~~i~~~~~~p~~v~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 126 (434)
T 4b4t_M 47 ELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVVKTSSRQT 126 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCEEEECCC---------------------------CCSEEEEEETTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhhhhhhccchhhhhccchhhhhhhhhhhhhcccCceEEEEcCCCCe
Confidence 334444444445555666666677777777777766554432 234666667777
Q ss_pred eeeecCccccccccCccchhhcccchhhhhhhcCCCCchhhhhhccccCCCCCcccccCcHHHHHHHHHHHhccccCchh
Q psy6098 157 FVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPEL 236 (378)
Q Consensus 157 ~~~~l~~~i~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~ 236 (378)
+++.+...++.+.+.|++++++....+.+..++|+..|+.+..+..+..|+++|+||+|++++|++|++.+.+|+.+|+.
T Consensus 127 ~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~ 206 (434)
T 4b4t_M 127 VFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADK 206 (434)
T ss_dssp EEEECCSSSCTTTSCSSEEEEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHH
T ss_pred EEEecccccCHhHCCCCCEEeEcCcchhhheecCcccCchhhhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHH
Confidence 88888889999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhh
Q psy6098 237 FDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWS 316 (378)
Q Consensus 237 ~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~ 316 (378)
|..+++.++++++||||||||||+++++||+.++.+++.++++++.++|+|++++.++.+|..|
T Consensus 207 f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A---------------- 270 (434)
T 4b4t_M 207 FKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALA---------------- 270 (434)
T ss_dssp HHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHH----------------
T ss_pred HHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHH----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 317 LLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 317 ~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
+...||||||||||+|+++|.+..++.+....+.+.++|.+||++..
T Consensus 271 -------------~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 271 -------------KEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp -------------HHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred -------------HhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 77899999999999999999776666777888899999999999864
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-35 Score=286.35 Aligned_cols=204 Identities=54% Similarity=0.930 Sum_probs=193.7
Q ss_pred cccceeeccCCCceeeecCccccccccCccchhhcccchhhhhhhcCCCCchhhhhhccccCCCCCcccccCcHHHHHHH
Q psy6098 144 KKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEI 223 (378)
Q Consensus 144 ~~~~i~~~~~~~~~~~~l~~~i~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l 223 (378)
+.+.+++.+.+..+++.+.+.++.+.+.+++++++....+.+..++|...|+.+..+.++..|+++|+||+|++++|++|
T Consensus 142 ~~~~~v~~~~~~~~~v~~~~~~~~~~l~~g~~v~l~~~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~DIgGl~~~k~~L 221 (467)
T 4b4t_H 142 DAKYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKL 221 (467)
T ss_dssp CCCCEEEETTSCCBCCCCCTTCCSSSCCTTCEECSCTTSCCCCCSSCSSSCCCCCCCEEESSCSCCCSSCTTCHHHHHHH
T ss_pred CCcEEEEecCCCeEEEecCCcCCHHHCCCCCEEEEccCcceeeecCCCccCCccceeeecCCCCCCHHHhccHHHHHHHH
Confidence 34668889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccccchhHHHHHHHHHHhhhh
Q psy6098 224 KEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLK 303 (378)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~ 303 (378)
++.+.+|+.+|+.+..+++.+++++|||||||||||+++++||+.++.+++.++++++.++|+|++++.++++|..|
T Consensus 222 ~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~A--- 298 (467)
T 4b4t_H 222 REVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMA--- 298 (467)
T ss_dssp HHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHH---
T ss_pred HHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHH---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 304 KLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
+...||||||||+|+++++|....++.+....+.++++|.+||++..
T Consensus 299 --------------------------r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 299 --------------------------RTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp --------------------------HHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred --------------------------HhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 77899999999999999999876667777888999999999998754
No 8
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=1.6e-36 Score=318.76 Aligned_cols=325 Identities=29% Similarity=0.486 Sum_probs=221.8
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
+++||||||||++||++|++++.+|+.++++++.++|.|+++++++.+|+.|+...|+ ++|+||+|.++..+.....
T Consensus 242 LL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~---il~iDEid~l~~~~~~~~~ 318 (806)
T 1ypw_A 242 LLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA---IIFIDELDAIAPKREKTHG 318 (806)
T ss_dssp EECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSE---EEEEESGGGTSCTTSCCCS
T ss_pred EEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCc---EEEeccHHHhhhccccccc
Confidence 6899999999999999999999999999999999999999999999999999998888 9999999999987554322
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccccccccccccccc---cceeeccCCCceeee
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQA-QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKK---KVLVKVHPEGKFVVD 160 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~-~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~---~~i~~~~~~~~~~~~ 160 (378)
... ..+...+.........-.. ......+..+.++ +.++++++|...+...++.. ..+++.+.....
T Consensus 319 ~~~---~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld---~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~--- 389 (806)
T 1ypw_A 319 EVE---RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID---PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--- 389 (806)
T ss_dssp HHH---HHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSC---TTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSC---
T ss_pred hHH---HHHHHHHHHHhhhhcccccEEEecccCCchhcC---HHHhcccccccccccCCCCHHHHHHHHHHHHhcCC---
Confidence 111 1111111000000000000 0000001111222 34556677776655554442 223333322211
Q ss_pred cCccccccccCc---c---------chhhcccc------------------------------hhhhhhhcCCCCchhhh
Q psy6098 161 IDKNIDINDVTP---N---------CRVALRNE------------------------------SYTLHKILPNKVDPLVS 198 (378)
Q Consensus 161 l~~~i~~~~l~~---~---------~~~~~~~~------------------------------~~~l~~i~~~~~~~~~~ 198 (378)
+...++...+.. + ++.+.... ..++....+ ...
T Consensus 390 l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~-----s~~ 464 (806)
T 1ypw_A 390 LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNP-----SAL 464 (806)
T ss_dssp CCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCC-----CCC
T ss_pred CcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCc-----hhh
Confidence 111111111100 0 00000000 000000000 011
Q ss_pred hhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEecc
Q psy6098 199 LMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 278 (378)
Q Consensus 199 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~ 278 (378)
.......+..+|++++|++++++.+.+.+.++..++..+.++++.++.+++|+||||||||+|+++||+.++.+++.+++
T Consensus 465 ~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~ 544 (806)
T 1ypw_A 465 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 544 (806)
T ss_dssp CCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCC
T ss_pred hhhcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 12234567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 279 SELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 279 ~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
+++..+|+++++..++.+|+.+ +...|+||||||||++++.|.+..+..+.
T Consensus 545 ~~l~~~~~g~~~~~i~~~f~~a-----------------------------~~~~p~vl~iDEid~l~~~r~~~~~~~~~ 595 (806)
T 1ypw_A 545 PELLTMWFGESEANVREIFDKA-----------------------------RQAAPCVLFFDELDSIAKARGGNIGDGGG 595 (806)
T ss_dssp SSSTTCCTTTSSHHHHHHHHHH-----------------------------HHHCSBCCCCSSHHHHCCTTTTCCSHHHH
T ss_pred hHhhhhhcCccHHHHHHHHHHH-----------------------------HhcCCeEEEEEChhhhhhhccCCCCCcch
Confidence 9999999999999999999988 66789999999999999998654333334
Q ss_pred HHHHHHHHHHHhccCCC
Q psy6098 359 EVQRTMLELLNQLDGFE 375 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~~ 375 (378)
...+.+.++|..|++..
T Consensus 596 ~~~~v~~~LL~~ld~~~ 612 (806)
T 1ypw_A 596 AADRVINQILTEMDGMS 612 (806)
T ss_dssp HHHHHHHHHHTTCC---
T ss_pred hHHHHHHHHHHHHhccc
Confidence 56788899999999764
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.91 E-value=1.6e-24 Score=224.60 Aligned_cols=141 Identities=43% Similarity=0.818 Sum_probs=129.6
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCccc
Q psy6098 203 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV 282 (378)
Q Consensus 203 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~ 282 (378)
...++++|+||+|+++++++|++.+.+|+.+|+.+..+++.++++++||||||||||+|+|+||+.++.+++.++++++.
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 283 QKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 283 ~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
++|+|++++.++++|+.| +.+.|+||||||||+|+++|.+.. +....+
T Consensus 276 sk~~gese~~lr~lF~~A-----------------------------~~~~PsIIfIDEiDal~~~r~~~~---~~~~~r 323 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEA-----------------------------EKNAPAIIFIDELDAIAPKREKTH---GEVERR 323 (806)
T ss_dssp SSCTTHHHHHHHHHHHHH-----------------------------TTSCSEEEEEESGGGTCCTTTTCC---CTTHHH
T ss_pred cccchHHHHHHHHHHHHH-----------------------------HHcCCeEEEEehhcccccccCCCC---ChHHHH
Confidence 999999999999999999 778999999999999999995432 234467
Q ss_pred HHHHHHHhccCCC
Q psy6098 363 TMLELLNQLDGFE 375 (378)
Q Consensus 363 ~~~~lL~~l~~~~ 375 (378)
.+.++|..|+++.
T Consensus 324 iv~~LL~~mdg~~ 336 (806)
T 3cf2_A 324 IVSQLLTLMDGLK 336 (806)
T ss_dssp HHHHHHTHHHHCC
T ss_pred HHHHHHHHHhccc
Confidence 7888998888764
No 10
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.2e-26 Score=217.95 Aligned_cols=154 Identities=36% Similarity=0.470 Sum_probs=110.6
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
||.||||||||++|||+|++++++|+.|++++++++|+||+|+++|++|+.|+..+|| ||||||+|+++..+.....
T Consensus 186 LL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~---IIFiDEiDai~~~R~~~~~ 262 (405)
T 4b4t_J 186 ILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPS---IIFMDEIDSIGSTRVEGSG 262 (405)
T ss_dssp EEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSE---EEEEESSSCCTTSCSCSSS
T ss_pred EEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCc---eEeeecchhhccCCCCCCC
Confidence 6789999999999999999999999999999999999999999999999999999999 9999999999987654332
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccccccccccccccc---cceeeccCCCce
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQ----RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKK---KVLVKVHPEGKF 157 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~---~~i~~~~~~~~~ 157 (378)
.... .....+..+...+..+... ....+++++.++ +++.|||||+..+..++|+. ..+++.+..+.
T Consensus 263 ~~~~---~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LD---pAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~- 335 (405)
T 4b4t_J 263 GGDS---EVQRTMLELLNQLDGFETSKNIKIIMATNRLDILD---PALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM- 335 (405)
T ss_dssp GGGG---HHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSC---HHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-
T ss_pred CCcH---HHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCC---HhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC-
Confidence 2211 1122222222222211110 011235556666 78899999999999998874 45666665543
Q ss_pred eeecCcccccccc
Q psy6098 158 VVDIDKNIDINDV 170 (378)
Q Consensus 158 ~~~l~~~i~~~~l 170 (378)
.+.++++.+.+
T Consensus 336 --~l~~dvdl~~l 346 (405)
T 4b4t_J 336 --NLTRGINLRKV 346 (405)
T ss_dssp --BCCSSCCHHHH
T ss_pred --CCCccCCHHHH
Confidence 23344444433
No 11
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.3e-25 Score=212.98 Aligned_cols=154 Identities=25% Similarity=0.352 Sum_probs=109.4
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
||.||||||||++|+|+|++++++|+.|++++++++|+|++|+++|.+|+.|+.++|| ||||||+|+++..+.....
T Consensus 220 LLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~---IIfiDEiDai~~~R~~~~~ 296 (437)
T 4b4t_I 220 ILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPS---IVFIDEIDAIGTKRYDSNS 296 (437)
T ss_dssp EEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSE---EEEEEEESSSSCCCSCSSC
T ss_pred ceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCc---EEEEehhhhhcccCCCCCC
Confidence 6789999999999999999999999999999999999999999999999999999999 9999999999988754333
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccccccccccccccc---cceeeccCCCce
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQ----RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKK---KVLVKVHPEGKF 157 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~---~~i~~~~~~~~~ 157 (378)
.... .....+..+...+..+... ....+++++.++ +++.|+|||+..+...+|+. ..|++.+..+.
T Consensus 297 ~~~~---~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LD---pALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~- 369 (437)
T 4b4t_I 297 GGER---EIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLD---PALIRPGRIDRKILFENPDLSTKKKILGIHTSKM- 369 (437)
T ss_dssp SSCC---HHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCC---TTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS-
T ss_pred CccH---HHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcC---HHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC-
Confidence 2211 1111122221111111100 011134555666 78899999999999988874 44666665543
Q ss_pred eeecCcccccccc
Q psy6098 158 VVDIDKNIDINDV 170 (378)
Q Consensus 158 ~~~l~~~i~~~~l 170 (378)
.+.++++.+.+
T Consensus 370 --~l~~dvdl~~L 380 (437)
T 4b4t_I 370 --NLSEDVNLETL 380 (437)
T ss_dssp --CBCSCCCHHHH
T ss_pred --CCCCcCCHHHH
Confidence 23344444433
No 12
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.4e-24 Score=208.83 Aligned_cols=142 Identities=33% Similarity=0.356 Sum_probs=104.8
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
||.||||||||++|||+|++++++|+.|++++|+++|+|++|+++|++|+.|+.++|| ||||||+|+++..+.....
T Consensus 247 LLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~---IIfiDEiDai~~~R~~~~~ 323 (467)
T 4b4t_H 247 LLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKAC---IIFFDEIDAVGGARFDDGA 323 (467)
T ss_dssp EECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSE---EEEEECCTTTSBCCSSSSC
T ss_pred EeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCc---eEeecccccccccccCcCC
Confidence 6889999999999999999999999999999999999999999999999999999999 9999999999987654332
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccccccccccccccc---cceeeccCCC
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQ----RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKK---KVLVKVHPEG 155 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~---~~i~~~~~~~ 155 (378)
..... ....+..+...+..+... ....+++++.++ +++.|+|||+..+...+|+. ..|++.+...
T Consensus 324 ~~~~~---~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LD---pALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~ 395 (467)
T 4b4t_H 324 GGDNE---VQRTMLELITQLDGFDPRGNIKVMFATNRPNTLD---PALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS 395 (467)
T ss_dssp GGGGH---HHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBC---HHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT
T ss_pred CccHH---HHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCC---hhhhccccccEEEEeCCcCHHHHHHHHHHHhcC
Confidence 22111 111112211111111100 011135556666 78899999999999998874 4566666554
No 13
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=8.7e-25 Score=212.39 Aligned_cols=141 Identities=26% Similarity=0.362 Sum_probs=103.3
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
||.||||||||++|+|+|++++++|+.|++++++++|+|++++++|.+|+.|+.++|| ||||||+|+++..+.+...
T Consensus 219 LLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~---IifiDEiDal~~~R~~~~~ 295 (434)
T 4b4t_M 219 LMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPT---IIFIDELDAIGTKRFDSEK 295 (434)
T ss_dssp EEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSE---EEEEECTHHHHCCCSSGGG
T ss_pred EEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCe---EEeecchhhhhhccCCCCC
Confidence 6789999999999999999999999999999999999999999999999999999999 9999999999988755333
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccccccccccccccc---ceeeccCC
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQ----RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKK---VLVKVHPE 154 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~---~i~~~~~~ 154 (378)
... ......+..+...+..+... ....+++++.++ +++.|+|||+..+..++|+.. .+++.+..
T Consensus 296 ~~~---~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD---~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~ 366 (434)
T 4b4t_M 296 SGD---REVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD---PALLRSGRLDRKIEFPLPSEDSRAQILQIHSR 366 (434)
T ss_dssp GTT---HHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCC---TTTCSTTSEEEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCc---hHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcC---HhHhcCCceeEEEEeCCcCHHHHHHHHHHHhc
Confidence 221 11111222222111111100 001134555565 688999999999999988743 45555443
No 14
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.87 E-value=4.6e-21 Score=201.18 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=61.6
Q ss_pred CCCCCCCCCCChhHHHHHHHhhcc----------CceEEEecccccc--ccccchhHHHHHHHHHHHHhcCCCCCceEEE
Q psy6098 2 LKPLHPTWIVSGKTLLARAVAHHT----------ECTFIRVSGSELV--QKFIGEGSRMVRELFVMARCKGSSRGTEFFT 69 (378)
Q Consensus 2 ~~~~~~~pPGtGKt~~a~~~a~~~----------~~~~~~v~~~~~~--~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~ 69 (378)
.+++++||||||||++|+++|..+ ++.++.++.+.++ .+|.|+.+++++.+|+.++...+ .||||
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~---~iL~I 284 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTN---SILFI 284 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSC---EEEEE
T ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCC---eEEEE
Confidence 368899999999999999999987 7789999999888 57999999999999999975444 59999
Q ss_pred eehhhhhh
Q psy6098 70 MDVDEAIK 77 (378)
Q Consensus 70 DEid~~~~ 77 (378)
||++.++.
T Consensus 285 DEi~~l~~ 292 (758)
T 1r6b_X 285 DEIHTIIG 292 (758)
T ss_dssp TTTTTTTT
T ss_pred echHHHhh
Confidence 99999864
No 15
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.5e-24 Score=208.33 Aligned_cols=142 Identities=25% Similarity=0.271 Sum_probs=103.8
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
||.||||||||++|+|+|++++++|+.|++++++++|+|+++++++.+|..|+.++|| ||||||+|+++..+.+...
T Consensus 219 LL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~---IifiDEiDai~~~R~~~~~ 295 (437)
T 4b4t_L 219 LLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPC---IIFMDEVDAIGGRRFSEGT 295 (437)
T ss_dssp EEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSE---EEEEECCCSSSCCCSSSCC
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCc---eeeeecccccccccccCCC
Confidence 6789999999999999999999999999999999999999999999999999999999 9999999999987644322
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccccccccccccccc---ceeeccCCC
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQ----RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKK---VLVKVHPEG 155 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~---~i~~~~~~~ 155 (378)
... ......+..+...+..+... ....+++++.++ +++.|+|||+..+..++|+.. .+++.+..+
T Consensus 296 ~~~---~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LD---pAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 367 (437)
T 4b4t_L 296 SAD---REIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLD---PALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK 367 (437)
T ss_dssp SST---THHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSC---TTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT
T ss_pred Ccc---hHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhC---HHHhCCCccceeeecCCcCHHHHHHHHHHHhcC
Confidence 211 11111122222122111110 011134556666 788999999999999988743 455555443
No 16
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=182.70 Aligned_cols=140 Identities=43% Similarity=0.748 Sum_probs=123.4
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhc-CceEEEeccCcc
Q psy6098 203 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-ECTFIRVSGSEL 281 (378)
Q Consensus 203 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~-~~~~i~~~~~~l 281 (378)
...|+++|+|++|++++++.|++.+.+|+.+++.+.. ...++.+++|+||||||||++++++|+.+ +.+++.++++++
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 4568899999999999999999999999999998874 46777899999999999999999999998 778999999999
Q ss_pred cccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHH
Q psy6098 282 VQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 361 (378)
Q Consensus 282 ~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~ 361 (378)
...|.++++..++++|..+ +...|+||||||||+++++|... ......
T Consensus 83 ~~~~~g~~~~~~~~lf~~a-----------------------------~~~~~~vl~iDEid~l~~~~~~~---~~~~~~ 130 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLA-----------------------------RENKPSIIFIDEIDSLCGSRSEN---ESEAAR 130 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHH-----------------------------HHTSSEEEEEETTTGGGCCSSSC---CTTHHH
T ss_pred HhhhhhHHHHHHHHHHHHH-----------------------------HhcCCcEEEeecHHHhccccccc---cchHHH
Confidence 9999999999999999888 56789999999999999988532 334566
Q ss_pred HHHHHHHHhccCCC
Q psy6098 362 RTMLELLNQLDGFE 375 (378)
Q Consensus 362 ~~~~~lL~~l~~~~ 375 (378)
+.+.++|..|++..
T Consensus 131 ~~~~~ll~~ld~~~ 144 (322)
T 1xwi_A 131 RIKTEFLVQMQGVG 144 (322)
T ss_dssp HHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhccc
Confidence 77889999998764
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.86 E-value=7.6e-22 Score=182.27 Aligned_cols=141 Identities=43% Similarity=0.777 Sum_probs=112.2
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccc
Q psy6098 204 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 283 (378)
Q Consensus 204 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~ 283 (378)
.+|+++|+|++|+++++++|++.+.+|+.+++.+..+++..+.+++|+||||||||||+++||+.++++++.+++.++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 284 KFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 284 ~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
.|.++..+.++.+|+.+ +...|+++|+||+|.++..|..... ....+.
T Consensus 83 ~~~~~~~~~i~~vf~~a-----------------------------~~~~p~i~~~Deid~~~~~r~~~~~---~~~~~~ 130 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRA-----------------------------KNSAPCVIFFDEVDALCPRRSDRET---GASVRV 130 (274)
T ss_dssp STTHHHHHHHHHHHHHH-----------------------------HHTCSEEEEEETCTTTCC------------CTTH
T ss_pred hhhhHHHHHHHHHHHHH-----------------------------HhcCCCeEeeehhhhhhcccCCCcc---hHHHHH
Confidence 99999999999999887 4568999999999999887743211 112356
Q ss_pred HHHHHHhccCCCC
Q psy6098 364 MLELLNQLDGFEA 376 (378)
Q Consensus 364 ~~~lL~~l~~~~~ 376 (378)
+.+++.+|++...
T Consensus 131 ~~~~l~~Lsgg~~ 143 (274)
T 2x8a_A 131 VNQLLTEMDGLEA 143 (274)
T ss_dssp HHHHHHHHHTCCS
T ss_pred HHHHHHhhhcccc
Confidence 6788888887643
No 18
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.3e-24 Score=205.37 Aligned_cols=142 Identities=28% Similarity=0.374 Sum_probs=102.2
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
||.||||||||++|+|+|++++++|+.|++++++++|+|++++++|++|+.|+.++|| |+||||+|+++..+.+...
T Consensus 210 LL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~---IifiDEiD~i~~~R~~~~~ 286 (428)
T 4b4t_K 210 LLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPS---IIFIDEVDSIATKRFDAQT 286 (428)
T ss_dssp EEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSE---EEEEECTHHHHCSCSSSCS
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCC---eeechhhhhhhccccCCCC
Confidence 6889999999999999999999999999999999999999999999999999999999 9999999999988644332
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccccccccccc-cccc---cceeeccCCC
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQ----RNELNAKVRMLREELQLLQEQGSYVGEVVKP-MDKK---KVLVKVHPEG 155 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~-l~~~---~~i~~~~~~~ 155 (378)
.... .....+.++...+..+... ....+++++.++ +++.|||||+..+..+ +|+. ..+++.+..+
T Consensus 287 ~~~~---~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD---~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~ 359 (428)
T 4b4t_K 287 GSDR---EVQRILIELLTQMDGFDQSTNVKVIMATNRADTLD---PALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK 359 (428)
T ss_dssp CCCC---HHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCC---HHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS
T ss_pred CCCh---HHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcC---hhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 2111 1111122222222111110 001134455566 7889999999999774 6664 3455555443
No 19
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.86 E-value=2.9e-22 Score=187.73 Aligned_cols=144 Identities=42% Similarity=0.801 Sum_probs=122.8
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcc
Q psy6098 202 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 281 (378)
Q Consensus 202 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l 281 (378)
+...|+.+|++++|+++++++|++.+.+++.+++.+.++++.++.+++|+||||||||+++++||+.++.+++.++++++
T Consensus 6 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l 85 (301)
T 3cf0_A 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 85 (301)
T ss_dssp CEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHH
Q psy6098 282 VQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 361 (378)
Q Consensus 282 ~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~ 361 (378)
...|.|+....++.+|..+ +...|+||||||||++.+.|............
T Consensus 86 ~~~~~g~~~~~~~~~f~~a-----------------------------~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~ 136 (301)
T 3cf0_A 86 LTMWFGESEANVREIFDKA-----------------------------RQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 136 (301)
T ss_dssp HHHHHTTCTTHHHHHHHHH-----------------------------HHTCSEEEEECSTTHHHHHHTTTTCCSSCSCC
T ss_pred HhhhcCchHHHHHHHHHHH-----------------------------HhcCCeEEEEEChHHHhhccCCCcCCcchHHH
Confidence 9999999988999999888 55689999999999999887542221111223
Q ss_pred HHHHHHHHhccCC
Q psy6098 362 RTMLELLNQLDGF 374 (378)
Q Consensus 362 ~~~~~lL~~l~~~ 374 (378)
+.+.++|..|++.
T Consensus 137 ~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 137 RVINQILTEMDGM 149 (301)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHhhcc
Confidence 4556677777654
No 20
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.85 E-value=5.4e-21 Score=200.50 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=48.4
Q ss_pred CCCCCCCCCCChhHHHHHHHhhcc----------CceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEe
Q psy6098 2 LKPLHPTWIVSGKTLLARAVAHHT----------ECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTM 70 (378)
Q Consensus 2 ~~~~~~~pPGtGKt~~a~~~a~~~----------~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~D 70 (378)
-|++++||||||||++|+++|..+ +++|+.++. .++|.|+++.+++.+|+.++...|+ |||||
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~---iLfiD 274 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNI---ILFID 274 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCC---EEEEC
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCE---EEEEc
Confidence 368999999999999999999997 889998888 7779999999999999999986665 99999
No 21
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.84 E-value=9.7e-21 Score=186.70 Aligned_cols=141 Identities=48% Similarity=0.850 Sum_probs=121.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCccccc
Q psy6098 205 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 284 (378)
Q Consensus 205 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~ 284 (378)
.+..+|++++|++++++++++.+.. +..+..+..+++..+.+++|+||||||||+++++||+.++.+++.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 4567899999999999999999876 677888899999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHH
Q psy6098 285 FIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 364 (378)
Q Consensus 285 ~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~ 364 (378)
++|.+...++.+|..+ +...|+||||||||++.++|.....+.++...+.+
T Consensus 89 ~~g~~~~~~r~lf~~A-----------------------------~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l 139 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQA-----------------------------KAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTL 139 (476)
T ss_dssp CTTHHHHHHHHHHHHH-----------------------------HHTCSEEEEEETGGGTCCC---------CHHHHHH
T ss_pred HhcccHHHHHHHHHHH-----------------------------HhcCCCEEEEechhhhhhhcccccCcCcHHHHHHH
Confidence 9999999999999888 56789999999999999998765667788888899
Q ss_pred HHHHHhccCCC
Q psy6098 365 LELLNQLDGFE 375 (378)
Q Consensus 365 ~~lL~~l~~~~ 375 (378)
.++|..|++++
T Consensus 140 ~~LL~~ld~~~ 150 (476)
T 2ce7_A 140 NQLLVEMDGFD 150 (476)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHhccC
Confidence 99999998764
No 22
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.84 E-value=6.1e-20 Score=194.72 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=53.6
Q ss_pred CCCCCCCCCCChhHHHHHHHhhcc----------CceEEEecccccc--ccccchhHHHHHHHHHHHHhc-CCCCCceEE
Q psy6098 2 LKPLHPTWIVSGKTLLARAVAHHT----------ECTFIRVSGSELV--QKFIGEGSRMVRELFVMARCK-GSSRGTEFF 68 (378)
Q Consensus 2 ~~~~~~~pPGtGKt~~a~~~a~~~----------~~~~~~v~~~~~~--~~~~Gese~~~~~~f~~a~~~-~~~~~~ilf 68 (378)
-+++++||||||||++|+++|..+ +.+++.++.++++ .+|.|+.+++++.+|+.++.. .| .|||
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~---~iL~ 268 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGE---VILF 268 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSS---EEEE
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCC---eEEE
Confidence 368999999999999999999987 8899999999998 679999999999999999863 34 4999
Q ss_pred Eeehhhhh
Q psy6098 69 TMDVDEAI 76 (378)
Q Consensus 69 ~DEid~~~ 76 (378)
|||++.+.
T Consensus 269 IDEi~~l~ 276 (854)
T 1qvr_A 269 IDELHTVV 276 (854)
T ss_dssp ECCC----
T ss_pred EecHHHHh
Confidence 99999887
No 23
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.83 E-value=2e-20 Score=173.38 Aligned_cols=145 Identities=61% Similarity=1.102 Sum_probs=131.4
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcc
Q psy6098 202 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 281 (378)
Q Consensus 202 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l 281 (378)
....|+.+|++++|+++++++|.+.+..++..++.+..+++.++.+++|+||||||||++++++|+.++.+++.+++.++
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHH
Q psy6098 282 VQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 361 (378)
Q Consensus 282 ~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~ 361 (378)
...+.+.....+...|..+ +...|+||||||||.+.++|.+...+.+....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~ 138 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLA-----------------------------KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQ 138 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHH-----------------------------HHTCSEEEEEETTHHHHBCCSSSCCGGGGHHH
T ss_pred HHhccchHHHHHHHHHHHH-----------------------------HHcCCeEEEEECHHHhcccCccccCCccHHHH
Confidence 9999999999999988877 56689999999999999998766666677888
Q ss_pred HHHHHHHHhccCCC
Q psy6098 362 RTMLELLNQLDGFE 375 (378)
Q Consensus 362 ~~~~~lL~~l~~~~ 375 (378)
..+.+++..+++..
T Consensus 139 ~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 139 RTLMQLLAEMDGFD 152 (285)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhCCC
Confidence 99999999887653
No 24
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.82 E-value=6e-20 Score=173.58 Aligned_cols=141 Identities=45% Similarity=0.787 Sum_probs=118.5
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCc
Q psy6098 201 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 280 (378)
Q Consensus 201 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~ 280 (378)
.+...|+.+|++++|++++++.|++.+.+++.+++.+.. +..++.+++|+||||||||++++++|..++.+++.+++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 355678899999999999999999999999999988876 5577789999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 281 LVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 281 l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
+...|.++++..++.+|..+ +...|+||||||||++.+.|.+..... .
T Consensus 87 l~~~~~g~~~~~~~~~f~~a-----------------------------~~~~~~vl~iDEid~l~~~~~~~~~~~---~ 134 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMA-----------------------------RENKPSIIFIDQVDALTGTRGEGESEA---S 134 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHH-----------------------------HHTSSEEEEEECGGGGSCC------CC---T
T ss_pred HhhcccchHHHHHHHHHHHH-----------------------------HhcCCeEEEechhhhhhccCCCCcchH---H
Confidence 99999999999999999988 667899999999999999885432222 3
Q ss_pred HHHHHHHHHhccCC
Q psy6098 361 QRTMLELLNQLDGF 374 (378)
Q Consensus 361 ~~~~~~lL~~l~~~ 374 (378)
.+.+.++|..|++.
T Consensus 135 ~~~~~~ll~~l~~~ 148 (322)
T 3eie_A 135 RRIKTELLVQMNGV 148 (322)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhccc
Confidence 34556677776654
No 25
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.81 E-value=1.3e-19 Score=165.49 Aligned_cols=143 Identities=43% Similarity=0.774 Sum_probs=118.7
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCccc
Q psy6098 203 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV 282 (378)
Q Consensus 203 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~ 282 (378)
+..++.+|++++|++++++++.+.+.+ +.+++.+..++...+.+++|+|||||||||++++|++.++.+++.+++.++.
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 456778999999999999999998876 7777888888888889999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 283 QKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 283 ~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
..+.++....++.+|+.+ +...|+++||||||.+...|.....+......+
T Consensus 83 ~~~~~~~~~~~~~~~~~a-----------------------------~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~ 133 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQA-----------------------------KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQ 133 (257)
T ss_dssp TSCCCCCHHHHHHHHHHH-----------------------------HTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHH
T ss_pred HHhhhhhHHHHHHHHHHH-----------------------------HHcCCeeehhhhhhhhccCCCCCcCCCchHHHH
Confidence 999999999999999887 556799999999999999886544444455567
Q ss_pred HHHHHHHhccCCC
Q psy6098 363 TMLELLNQLDGFE 375 (378)
Q Consensus 363 ~~~~lL~~l~~~~ 375 (378)
.+.++|..+++..
T Consensus 134 ~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 134 TLNQMLVEMDGFE 146 (257)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHhhCcc
Confidence 7888888888653
No 26
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.81 E-value=5.6e-20 Score=176.05 Aligned_cols=140 Identities=44% Similarity=0.784 Sum_probs=112.5
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcc
Q psy6098 202 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 281 (378)
Q Consensus 202 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l 281 (378)
....++.+|++++|++++++.|.+.+.+++.+++.+.. +..++.+++|+||||||||++++++|..++.+++.+++.++
T Consensus 42 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l 120 (355)
T 2qp9_X 42 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 120 (355)
T ss_dssp -----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 34567889999999999999999999999999988876 56778899999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHH
Q psy6098 282 VQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 361 (378)
Q Consensus 282 ~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~ 361 (378)
...|.++.+..++.+|..+ +...|+||||||||.+.+.|... ......
T Consensus 121 ~~~~~g~~~~~~~~~f~~a-----------------------------~~~~~~vl~iDEid~l~~~r~~~---~~~~~~ 168 (355)
T 2qp9_X 121 VSKWMGESEKLVKQLFAMA-----------------------------RENKPSIIFIDQVDALTGTRGEG---ESEASR 168 (355)
T ss_dssp HSCC---CHHHHHHHHHHH-----------------------------HHTSSEEEEEECGGGGTC---------CTHHH
T ss_pred hhhhcchHHHHHHHHHHHH-----------------------------HHcCCeEEEEechHhhcccCCCC---cchHHH
Confidence 9999999999999999887 56789999999999999988432 233455
Q ss_pred HHHHHHHHhccCC
Q psy6098 362 RTMLELLNQLDGF 374 (378)
Q Consensus 362 ~~~~~lL~~l~~~ 374 (378)
+.+.++|..|++.
T Consensus 169 ~~~~~ll~~l~~~ 181 (355)
T 2qp9_X 169 RIKTELLVQMNGV 181 (355)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhcc
Confidence 6677788877754
No 27
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.79 E-value=2.1e-19 Score=177.06 Aligned_cols=142 Identities=43% Similarity=0.752 Sum_probs=113.5
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhc-CceEEEeccC
Q psy6098 201 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-ECTFIRVSGS 279 (378)
Q Consensus 201 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~-~~~~i~~~~~ 279 (378)
.....|+.+|++++|++++++.|.+.+.+|+.+++.+.. +..++.+++|+||||||||++++++|..+ +.+++.++++
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~ 202 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 202 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHH
Confidence 345678899999999999999999999999999888764 35677899999999999999999999999 7789999999
Q ss_pred cccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 280 ELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 280 ~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
++...|+|+++..++.+|..+ +...|+||||||||++++.|... ....
T Consensus 203 ~l~~~~~g~~~~~~~~~f~~a-----------------------------~~~~~~vl~iDEid~l~~~~~~~---~~~~ 250 (444)
T 2zan_A 203 DLVSKWLGESEKLVKNLFQLA-----------------------------RENKPSIIFIDEIDSLCGSRSEN---ESEA 250 (444)
T ss_dssp ---------CCCTHHHHHHHH-----------------------------HHSCSEEEEESCTTTTCCCSSCC---CCGG
T ss_pred HHHhhhcchHHHHHHHHHHHH-----------------------------HHcCCeEEEEechHhhccCCCCc---cccH
Confidence 999999999988899999877 56789999999999999987542 2334
Q ss_pred HHHHHHHHHHhccCCC
Q psy6098 360 VQRTMLELLNQLDGFE 375 (378)
Q Consensus 360 ~~~~~~~lL~~l~~~~ 375 (378)
..+.+.++|..|++..
T Consensus 251 ~~~~~~~lL~~l~~~~ 266 (444)
T 2zan_A 251 ARRIKTEFLVQMQGVG 266 (444)
T ss_dssp GHHHHHHHHTTTTCSS
T ss_pred HHHHHHHHHHHHhCcc
Confidence 5677889999998753
No 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.79 E-value=6.1e-19 Score=161.13 Aligned_cols=140 Identities=41% Similarity=0.714 Sum_probs=103.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccc
Q psy6098 206 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKF 285 (378)
Q Consensus 206 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~ 285 (378)
|+.+|++++|++++++.+++.+.+ +..++.+..+++..+.+++|+||||||||++++++++.++.+++.+++.++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 467899999999999999998876 7778888889999999999999999999999999999999999999999999888
Q ss_pred cchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCC-CChHHHHHH
Q psy6098 286 IGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSG-GDSEVQRTM 364 (378)
Q Consensus 286 ~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~-~d~~~~~~~ 364 (378)
.+.+...+..+|..+ +...|+||||||+|.+..+|.....+ .+......+
T Consensus 80 ~~~~~~~~~~~~~~a-----------------------------~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l 130 (262)
T 2qz4_A 80 GGLGAARVRSLFKEA-----------------------------RARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTL 130 (262)
T ss_dssp TTHHHHHHHHHHHHH-----------------------------HHTCSEEEEEECC-------------------CHHH
T ss_pred cChhHHHHHHHHHHH-----------------------------HhcCCeEEEEeCcchhhccccccccCccchhHHHHH
Confidence 888888888888877 45679999999999999887442222 233445677
Q ss_pred HHHHHhccCCC
Q psy6098 365 LELLNQLDGFE 375 (378)
Q Consensus 365 ~~lL~~l~~~~ 375 (378)
.++|..+++.+
T Consensus 131 ~~ll~~~~~~~ 141 (262)
T 2qz4_A 131 NQLLVEMDGMG 141 (262)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHhhCcC
Confidence 88888887654
No 29
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.79 E-value=9e-19 Score=173.63 Aligned_cols=141 Identities=47% Similarity=0.829 Sum_probs=122.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccc
Q psy6098 206 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKF 285 (378)
Q Consensus 206 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~ 285 (378)
+..+|++++|+++++.++++.+.. +..+..+..+++..+.+++|+||||||||+|+++|++.++.+++.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 678999999999999999998876 6777888899999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHH
Q psy6098 286 IGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML 365 (378)
Q Consensus 286 ~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~ 365 (378)
++.....++.+|+.+ +...|+++||||||.+...|.....+.+.+..+.+.
T Consensus 105 ~g~~~~~v~~lfq~a-----------------------------~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~ 155 (499)
T 2dhr_A 105 VGVGAARVRDLFETA-----------------------------KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN 155 (499)
T ss_dssp TTHHHHHHHHHTTTS-----------------------------SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH-----------------------------HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHH
Confidence 998888888888766 456899999999999998875433334556678889
Q ss_pred HHHHhccCCCC
Q psy6098 366 ELLNQLDGFEA 376 (378)
Q Consensus 366 ~lL~~l~~~~~ 376 (378)
++|.+|++...
T Consensus 156 ~LL~~Ldg~~~ 166 (499)
T 2dhr_A 156 QLLVEMDGFEK 166 (499)
T ss_dssp HHHHHGGGCCS
T ss_pred HHHHHhccccc
Confidence 99999997653
No 30
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=166.13 Aligned_cols=142 Identities=42% Similarity=0.764 Sum_probs=118.1
Q ss_pred hccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccC
Q psy6098 200 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 279 (378)
Q Consensus 200 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~ 279 (378)
......++.+|++++|++++++.|.+.+.+++.+++.+.... .++.+++|+||||||||+++++||..++.+++.++++
T Consensus 73 ~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~ 151 (357)
T 3d8b_A 73 EIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISAS 151 (357)
T ss_dssp HTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGG
T ss_pred hcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehH
Confidence 345566889999999999999999999999888888776654 5677999999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 280 ELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 280 ~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
++...|.++....++.+|..+ +...|+||||||||.+.+.|.. +.+..
T Consensus 152 ~l~~~~~g~~~~~~~~~~~~a-----------------------------~~~~~~vl~iDEid~l~~~~~~---~~~~~ 199 (357)
T 3d8b_A 152 SLTSKWVGEGEKMVRALFAVA-----------------------------RCQQPAVIFIDEIDSLLSQRGD---GEHES 199 (357)
T ss_dssp GGCCSSTTHHHHHHHHHHHHH-----------------------------HHTCSEEEEEETHHHHTBC---------CH
T ss_pred HhhccccchHHHHHHHHHHHH-----------------------------HhcCCeEEEEeCchhhhccCCC---CcchH
Confidence 999999999999898888877 4568999999999999988732 33445
Q ss_pred HHHHHHHHHHhccCC
Q psy6098 360 VQRTMLELLNQLDGF 374 (378)
Q Consensus 360 ~~~~~~~lL~~l~~~ 374 (378)
..+.+.++|..+++.
T Consensus 200 ~~~~~~~lL~~l~~~ 214 (357)
T 3d8b_A 200 SRRIKTEFLVQLDGA 214 (357)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 567777888888764
No 31
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.77 E-value=4.4e-18 Score=158.63 Aligned_cols=140 Identities=44% Similarity=0.744 Sum_probs=113.2
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCc
Q psy6098 201 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 280 (378)
Q Consensus 201 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~ 280 (378)
.....++.+|++++|++++++.+.+.+.++..+++.+..+. .++.+++|+||||||||++++++++.++.+++.+++++
T Consensus 11 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 89 (297)
T 3b9p_A 11 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAAS 89 (297)
T ss_dssp TBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTT
T ss_pred hccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHH
Confidence 44566788999999999999999999999888888877655 45779999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 281 LVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 281 l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
+...+.++....++.+|..+ +...|+||||||+|++...|........
T Consensus 90 l~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~vl~iDEid~l~~~~~~~~~~~~--- 137 (297)
T 3b9p_A 90 LTSKYVGDGEKLVRALFAVA-----------------------------RHMQPSIIFIDEVDSLLSERSSSEHEAS--- 137 (297)
T ss_dssp TSSSSCSCHHHHHHHHHHHH-----------------------------HHTCSEEEEEETGGGTSBCC-----CCS---
T ss_pred HhhcccchHHHHHHHHHHHH-----------------------------HHcCCcEEEeccHHHhccccccCcchHH---
Confidence 99999999888888888877 5568999999999999988743222222
Q ss_pred HHHHHHHHHhccC
Q psy6098 361 QRTMLELLNQLDG 373 (378)
Q Consensus 361 ~~~~~~lL~~l~~ 373 (378)
.+...++|..+++
T Consensus 138 ~~~~~~ll~~l~~ 150 (297)
T 3b9p_A 138 RRLKTEFLVEFDG 150 (297)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 2334455555554
No 32
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.76 E-value=2.8e-18 Score=156.42 Aligned_cols=144 Identities=46% Similarity=0.820 Sum_probs=115.4
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcc
Q psy6098 202 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 281 (378)
Q Consensus 202 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l 281 (378)
....|..+|++++|+++++.++++.+.. +..+..+..+++..+.+++|+||||||||||+++|++.++..++.+++.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 3456788999999999999999988776 566777888888888889999999999999999999999988999999888
Q ss_pred cccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHH
Q psy6098 282 VQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 361 (378)
Q Consensus 282 ~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~ 361 (378)
...+.+.....+..+|+.+ +...|+++|+||||.+...|.....+.+....
T Consensus 86 ~~~~~~~~~~~i~~~~~~~-----------------------------~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~ 136 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETA-----------------------------KRHAPCIVFIDEIDAVGRKRGSGVGGGNDERE 136 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHH-----------------------------TTSSSEEEEEETHHHHHC---------CHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH-----------------------------HhcCCeEEEehhhhhhhcccCccccccchHHH
Confidence 8878888778888888877 44579999999999998877432223445666
Q ss_pred HHHHHHHHhccCCC
Q psy6098 362 RTMLELLNQLDGFE 375 (378)
Q Consensus 362 ~~~~~lL~~l~~~~ 375 (378)
+.+.+++.+|++..
T Consensus 137 ~~~~~ll~~l~g~~ 150 (254)
T 1ixz_A 137 QTLNQLLVEMDGFE 150 (254)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCC
Confidence 77889999988754
No 33
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.76 E-value=1.5e-18 Score=172.37 Aligned_cols=138 Identities=43% Similarity=0.824 Sum_probs=120.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCccccc
Q psy6098 205 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 284 (378)
Q Consensus 205 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~ 284 (378)
.++.+|++++|++.++++|.+.+.+++.+++.+..++..++.+++|+||||||||+++++|+..++.+++.+++.++.+.
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHH
Q psy6098 285 FIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM 364 (378)
Q Consensus 285 ~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~ 364 (378)
+.++....++..|..+ ....|++|||||||+|.++|... ......+.+
T Consensus 278 ~~g~~~~~~~~~f~~A-----------------------------~~~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~ 325 (489)
T 3hu3_A 278 LAGESESNLRKAFEEA-----------------------------EKNAPAIIFIDELDAIAPKREKT---HGEVERRIV 325 (489)
T ss_dssp CTTHHHHHHHHHHHHH-----------------------------HHTCSEEEEEESHHHHCBCTTSC---CCHHHHHHH
T ss_pred hcchhHHHHHHHHHHH-----------------------------HhcCCcEEEecchhhhccccccc---cchHHHHHH
Confidence 9999999999999988 56689999999999999988542 223444556
Q ss_pred HHHHHhccCC
Q psy6098 365 LELLNQLDGF 374 (378)
Q Consensus 365 ~~lL~~l~~~ 374 (378)
.++|..|++.
T Consensus 326 ~~LL~~ld~~ 335 (489)
T 3hu3_A 326 SQLLTLMDGL 335 (489)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHhhcc
Confidence 6666666543
No 34
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.75 E-value=5.5e-18 Score=164.22 Aligned_cols=145 Identities=39% Similarity=0.713 Sum_probs=110.0
Q ss_pred hhhhccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 197 VSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 197 ~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
....++...++.+|++++|++.+++.|.+.+.++..+++.+...+ .++.+++|+||||||||+++++||..++.+++.+
T Consensus 101 ~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 101 IMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp GGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred HHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 344566678889999999999999999999999888888877666 4567999999999999999999999999999999
Q ss_pred ccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCC
Q psy6098 277 SGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGG 356 (378)
Q Consensus 277 ~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~ 356 (378)
++.++...|.++....+..+|..+ +...|+||||||||.++..|... .
T Consensus 180 ~~~~l~~~~~g~~~~~~~~~~~~a-----------------------------~~~~~~il~iDEid~l~~~~~~~---~ 227 (389)
T 3vfd_A 180 SAASLTSKYVGEGEKLVRALFAVA-----------------------------RELQPSIIFIDQVDSLLCERREG---E 227 (389)
T ss_dssp CSCCC-------CHHHHHHHHHHH-----------------------------HHSSSEEEEEETGGGGC----------
T ss_pred eHHHhhccccchHHHHHHHHHHHH-----------------------------HhcCCeEEEEECchhhcccCCCc---c
Confidence 999999999999999999998887 56689999999999999887432 2
Q ss_pred ChHHHHHHHHHHHhccCC
Q psy6098 357 DSEVQRTMLELLNQLDGF 374 (378)
Q Consensus 357 d~~~~~~~~~lL~~l~~~ 374 (378)
.....+.+.++|..|++.
T Consensus 228 ~~~~~~~~~~ll~~l~~~ 245 (389)
T 3vfd_A 228 HDASRRLKTEFLIEFDGV 245 (389)
T ss_dssp -CTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhcc
Confidence 222345556666666643
No 35
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.74 E-value=4.9e-18 Score=178.43 Aligned_cols=140 Identities=44% Similarity=0.816 Sum_probs=122.8
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccc
Q psy6098 204 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 283 (378)
Q Consensus 204 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~ 283 (378)
..++++|++++|+++++++|.+.+.+++.+++.+.++++.++++++|+|||||||||++++||+.++.+++.+++.++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 284 KFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 284 ~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
.+.++....++.+|+.+ ....|+++|+||||.+++.|..+. .....+.
T Consensus 277 ~~~g~~~~~l~~vf~~a-----------------------------~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~ 324 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEA-----------------------------EKNAPAIIFIDELDAIAPKREKTH---GEVERRI 324 (806)
T ss_dssp SSTTHHHHHHHHHHHHH-----------------------------HHHCSEEEEEESGGGTSCTTSCCC---SHHHHHH
T ss_pred hhhhhHHHHHHHHHHHH-----------------------------HhcCCcEEEeccHHHhhhcccccc---chHHHHH
Confidence 99999999999999988 456899999999999999885432 2334455
Q ss_pred HHHHHHhccCCC
Q psy6098 364 MLELLNQLDGFE 375 (378)
Q Consensus 364 ~~~lL~~l~~~~ 375 (378)
+.+++..|++..
T Consensus 325 ~~~Ll~ll~g~~ 336 (806)
T 1ypw_A 325 VSQLLTLMDGLK 336 (806)
T ss_dssp HHHHHHHHHSSC
T ss_pred HHHHHHHhhhhc
Confidence 566666666543
No 36
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.72 E-value=2.5e-17 Score=152.27 Aligned_cols=142 Identities=46% Similarity=0.828 Sum_probs=114.3
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccc
Q psy6098 204 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 283 (378)
Q Consensus 204 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~ 283 (378)
..++.+|++++|++++++++++.+.. +..+..+..+++..+.+++|+||||||||||+++|++.++..++.+++.++..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 34778999999999999999988765 56677788888888888999999999999999999999998899999988887
Q ss_pred cccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 284 KFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 284 ~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
.+.+.....+..+|+.+ +...|+++|+||+|.+...|.....+.+....+.
T Consensus 112 ~~~~~~~~~i~~~~~~~-----------------------------~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~ 162 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETA-----------------------------KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT 162 (278)
T ss_dssp STTTHHHHHHHHHHHHH-----------------------------HTSCSEEEEEETHHHHHCC--------CHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH-----------------------------HhcCCcEEehhhhHhhhcccccccCCcchHHHHH
Confidence 77777777788888877 4457999999999999877643222234556778
Q ss_pred HHHHHHhccCCC
Q psy6098 364 MLELLNQLDGFE 375 (378)
Q Consensus 364 ~~~lL~~l~~~~ 375 (378)
+.+++.+|++..
T Consensus 163 ~~~ll~~lsgg~ 174 (278)
T 1iy2_A 163 LNQLLVEMDGFE 174 (278)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHhCCC
Confidence 889999988754
No 37
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.71 E-value=4.8e-18 Score=161.39 Aligned_cols=125 Identities=25% Similarity=0.271 Sum_probs=98.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc-------------ccch-----hHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK-------------FIGE-----GSRMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~-------------~~~~-----~~~~v~~~~ 297 (378)
-+|.+.+|+.++|+||||||||||+|+|+|+..++ .|.+++.++... |+.+ ...++.+.+
T Consensus 47 vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env 126 (366)
T 3tui_C 47 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNV 126 (366)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHH
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHH
Confidence 46789999999999999999999999999999886 888888665210 1111 111222222
Q ss_pred HHh-----------------hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 298 VMA-----------------SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 298 ~~a-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
... .++.+.+.......+..||+|++||+++||+ ..|.|||+|| |++++|+
T Consensus 127 ~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDE----------PTs~LD~ 196 (366)
T 3tui_C 127 ALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQ----------ATSALDP 196 (366)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEES----------TTTTSCH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC----------CCccCCH
Confidence 211 2444556667778889999999999999999 8999999999 9999999
Q ss_pred HHHHHHHHHHHhcc
Q psy6098 359 EVQRTMLELLNQLD 372 (378)
Q Consensus 359 ~~~~~~~~lL~~l~ 372 (378)
..+..++++|+++.
T Consensus 197 ~~~~~i~~lL~~l~ 210 (366)
T 3tui_C 197 ATTRSILELLKDIN 210 (366)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999885
No 38
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.71 E-value=5.7e-18 Score=155.85 Aligned_cols=125 Identities=16% Similarity=0.146 Sum_probs=97.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc------------cccchhH------HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ------------KFIGEGS------RMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~------------~~~~~~~------~~v~~~~ 297 (378)
-++.+.+|+.++|+||||||||||+|+|+|++.+. .|.+++.++.. .|+.+.. .++.+.+
T Consensus 27 isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l 106 (275)
T 3gfo_A 27 INMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDV 106 (275)
T ss_dssp EEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHH
Confidence 46788999999999999999999999999999876 78888865510 0111110 1222222
Q ss_pred HH-----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 298 VM-----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 298 ~~-----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
.. ..+..+.+.......+..||+|++||+++|++ ..|.|||||| |++++|+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDE----------Pts~LD~ 176 (275)
T 3gfo_A 107 SFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDE----------PTAGLDP 176 (275)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEEC----------TTTTCCH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC----------ccccCCH
Confidence 21 12444555666778889999999999999998 8999999999 9999999
Q ss_pred HHHHHHHHHHHhcc
Q psy6098 359 EVQRTMLELLNQLD 372 (378)
Q Consensus 359 ~~~~~~~~lL~~l~ 372 (378)
..+..+.++|.++.
T Consensus 177 ~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 177 MGVSEIMKLLVEMQ 190 (275)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999885
No 39
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.71 E-value=6.2e-19 Score=161.96 Aligned_cols=142 Identities=44% Similarity=0.786 Sum_probs=109.9
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccc
Q psy6098 204 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 283 (378)
Q Consensus 204 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~ 283 (378)
..++.+|++++|++++++.+.+.+.+ +.+++.+..++...+.+++|+||||||||++++++++.++.+++.+++.++..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 45678899999999999999998876 77888889999999999999999999999999999999999999999998888
Q ss_pred cccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCC-CCCCChHHHH
Q psy6098 284 KFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIES-GSGGDSEVQR 362 (378)
Q Consensus 284 ~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~-~~~~d~~~~~ 362 (378)
.+.+.+...++..|..+ +...|+||||||+|.+...|... ..+.+....+
T Consensus 83 ~~~~~~~~~~~~~~~~a-----------------------------~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 133 (268)
T 2r62_A 83 MFVGLGASRVRDLFETA-----------------------------KKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQ 133 (268)
T ss_dssp SCSSSCSSSSSTTHHHH-----------------------------HHSCSCEEEESCGGGTTC----------CCCSCS
T ss_pred hhcchHHHHHHHHHHHH-----------------------------HhcCCeEEEEeChhhhcccccccccCCCchhHHH
Confidence 88777666566666655 44579999999999999876321 1112222234
Q ss_pred HHHHHHHhccCCC
Q psy6098 363 TMLELLNQLDGFE 375 (378)
Q Consensus 363 ~~~~lL~~l~~~~ 375 (378)
.+.++|..+++..
T Consensus 134 ~~~~ll~~l~~~~ 146 (268)
T 2r62_A 134 TLNQLLAEMDGFG 146 (268)
T ss_dssp STTTTTTTTTCSS
T ss_pred HHHHHHHHhhCcc
Confidence 4567777777653
No 40
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.71 E-value=7e-18 Score=152.08 Aligned_cols=125 Identities=20% Similarity=0.204 Sum_probs=93.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc--------------ccch-----hHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK--------------FIGE-----GSRMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~--------------~~~~-----~~~~v~~~ 296 (378)
-++.+.+|+.++|+||||||||||+|+|+|.+.+. .|.+++.++... |+.+ ...++.+.
T Consensus 24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~en 103 (235)
T 3tif_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALEN 103 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHH
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHH
Confidence 46789999999999999999999999999999886 788887544210 1111 01123332
Q ss_pred HHHh--------------------hhhhhhhccC-chhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCC
Q psy6098 297 FVMA--------------------SLKKLAFAHH-PLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESG 353 (378)
Q Consensus 297 ~~~a--------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~ 353 (378)
+... .+..+.+... ....+..||+|++||+++|++ ..|.|||||| |+
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDE----------Pt 173 (235)
T 3tif_A 104 VELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQ----------PT 173 (235)
T ss_dssp HHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES----------TT
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC----------Cc
Confidence 2211 1222233332 256788999999999999999 8999999999 99
Q ss_pred CCCChHHHHHHHHHHHhcc
Q psy6098 354 SGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 354 ~~~d~~~~~~~~~lL~~l~ 372 (378)
+++|+..+..+.++|.++.
T Consensus 174 s~LD~~~~~~i~~~l~~l~ 192 (235)
T 3tif_A 174 WALDSKTGEKIMQLLKKLN 192 (235)
T ss_dssp TTSCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999885
No 41
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.71 E-value=2.6e-17 Score=181.27 Aligned_cols=138 Identities=20% Similarity=0.277 Sum_probs=97.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccccC----------chhhhh------cC------------CCCCcceeEeCCCCCc
Q psy6098 206 PDSTYEMVGGLDNQIKEIKEVIELPVKH----------PELFDA------LG------------IAQPKGVLLYGPPGTG 257 (378)
Q Consensus 206 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~----------~~~~~~------~~------------~~~~~~~ll~Gp~G~G 257 (378)
+.++|++++|++++|+++.+.+.|++.+ ++.++. .| ++.|+.+++|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 3478999999999999999999998844 445544 22 4466679999999999
Q ss_pred hHHHHHHHhhhcCc---e--EEEecc--Cccc--------ccccch----hHHHHHHHHHHhhhhhhhhccCchhhhhHh
Q psy6098 258 KTLLARAVAHHTEC---T--FIRVSG--SELV--------QKFIGE----GSRMVRELFVMASLKKLAFAHHPLLFWSLL 318 (378)
Q Consensus 258 KTtl~~~ia~~~~~---~--~i~~~~--~~l~--------~~~~~~----~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~ 318 (378)
||+|+++++..... + ||.+.. .++. ++|+++ +++.++.+|.+|
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~a------------------ 1156 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA------------------ 1156 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH------------------
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHH------------------
Confidence 99999999875532 3 555544 2232 667778 889999888877
Q ss_pred hhhhhhhhcccccCCCeEEEEecCccccCCCC---CCCCCCC-hHHHHHHHHHHHhccC
Q psy6098 319 TILTNTIVCNFREHAPSIIFMDEIDSIGSSRI---ESGSGGD-SEVQRTMLELLNQLDG 373 (378)
Q Consensus 319 ~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~---~~~~~~d-~~~~~~~~~lL~~l~~ 373 (378)
|...|++||+||+|+|++.|. +- +..+ ....|.+.++|++|++
T Consensus 1157 -----------r~~~~~~i~~d~~~al~~~~~~~g~~-~~~~~~~~~r~~~q~l~~~~~ 1203 (1706)
T 3cmw_A 1157 -----------RSGAVDVIVVDSVAALTPKAEIEGEI-GDSHMGLAARMMSQAMRKLAG 1203 (1706)
T ss_dssp -----------HHTCCSEEEESCGGGCCCHHHHHSCT-TCCCTTHHHHHHHHHHHHHHH
T ss_pred -----------HhcCCeEEEeCchHhcCccccccccc-ccccccHHHHHHHHHHHHHHh
Confidence 778999999999999999843 22 2122 3556779999999987
No 42
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.71 E-value=7.9e-18 Score=150.66 Aligned_cols=129 Identities=18% Similarity=0.179 Sum_probs=97.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----------c---ccch-----hHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----------K---FIGE-----GSRMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----------~---~~~~-----~~~~v~~~ 296 (378)
-+|.+.+|+.++|.||||||||||+|+|+|.+.+. .|.+++.++.. . |+.+ ...++.+.
T Consensus 23 vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~ 102 (224)
T 2pcj_A 23 ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALEN 102 (224)
T ss_dssp EEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHH
Confidence 46788899999999999999999999999999876 78887755421 1 1111 00122222
Q ss_pred HHH-----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 297 FVM-----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 297 ~~~-----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+.. ..++.+.+.......+..||+|++|+++++++ ..|.+|+||| |++++|
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE----------Pt~~LD 172 (224)
T 2pcj_A 103 VIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADE----------PTGNLD 172 (224)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEES----------TTTTCC
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC----------CCCCCC
Confidence 211 12334445566677888999999999999998 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccCCCC
Q psy6098 358 SEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~~~~ 376 (378)
+..+..+.++|.++...+.
T Consensus 173 ~~~~~~~~~~l~~l~~~g~ 191 (224)
T 2pcj_A 173 SANTKRVMDIFLKINEGGT 191 (224)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCC
Confidence 9999999999998853343
No 43
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.70 E-value=1.1e-17 Score=153.00 Aligned_cols=129 Identities=21% Similarity=0.254 Sum_probs=97.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccc--c----------cccch-----hHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELV--Q----------KFIGE-----GSRMVRELFV 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~--~----------~~~~~-----~~~~v~~~~~ 298 (378)
-+|.+.+|+.++|+||||||||||+|+|+|++.++ .|.+++.++. . .|+.+ ...++.+.+.
T Consensus 43 vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~ 122 (263)
T 2olj_A 43 INVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNIT 122 (263)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHH
T ss_pred eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHH
Confidence 46788999999999999999999999999999876 7888875542 0 01111 0112322222
Q ss_pred H------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 299 M------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 299 ~------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
. ..++.+.+.......+..||+|++|+++++++ ..|.|||||| |++++|+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDE----------Pts~LD~ 192 (263)
T 2olj_A 123 LAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDE----------PTSALDP 192 (263)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES----------TTTTSCH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeC----------CcccCCH
Confidence 1 11333445555667788999999999999998 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccCCCC
Q psy6098 359 EVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~~~~ 376 (378)
..+..+.++|.++...+.
T Consensus 193 ~~~~~~~~~l~~l~~~g~ 210 (263)
T 2olj_A 193 EMVGEVLSVMKQLANEGM 210 (263)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 999999999998854343
No 44
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.70 E-value=1.1e-17 Score=152.47 Aligned_cols=129 Identities=19% Similarity=0.169 Sum_probs=96.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc---------cccch-----hHHHHHHHHHH--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ---------KFIGE-----GSRMVRELFVM-- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~---------~~~~~-----~~~~v~~~~~~-- 299 (378)
-+|.+.+|+.++|.||||||||||+|+|+|.+.+. .|.+++.++.. .|+.+ ...++.+.+..
T Consensus 34 vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~ 113 (256)
T 1vpl_A 34 ISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVA 113 (256)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHH
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHH
Confidence 36788999999999999999999999999999876 78887755421 01111 00112222111
Q ss_pred ---------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 300 ---------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 300 ---------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
..+..+.+.......+..||+|++|+++++++ ..|+|||||| |++++|+..+.
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE----------Pts~LD~~~~~ 183 (256)
T 1vpl_A 114 GFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE----------PTSGLDVLNAR 183 (256)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES----------TTTTCCHHHHH
T ss_pred HHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC----------CccccCHHHHH
Confidence 11333444555667788999999999999998 9999999999 99999999999
Q ss_pred HHHHHHHhccCCCC
Q psy6098 363 TMLELLNQLDGFEA 376 (378)
Q Consensus 363 ~~~~lL~~l~~~~~ 376 (378)
.+.++|.++...+.
T Consensus 184 ~l~~~l~~l~~~g~ 197 (256)
T 1vpl_A 184 EVRKILKQASQEGL 197 (256)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCC
Confidence 99999998854343
No 45
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.70 E-value=9.5e-18 Score=153.84 Aligned_cols=126 Identities=25% Similarity=0.217 Sum_probs=96.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccch-----hHHHHHHHHHH-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGE-----GSRMVRELFVM- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~-----~~~~v~~~~~~- 299 (378)
-++.+.+|+.++|+||||||||||+|+|+|++.+. .|.++|.++... |+.+ ...++.+.+..
T Consensus 30 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (266)
T 4g1u_C 30 VSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMG 109 (266)
T ss_dssp EEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGG
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhh
Confidence 46788999999999999999999999999999876 888888665211 1100 00122222221
Q ss_pred --------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--C------CCeEEEEecCccccCCCCCCCCCCC
Q psy6098 300 --------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--H------APSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 300 --------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
..+..+.+.......+..||+|++||+.+|++ + .|.|||||| |++++|
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDE----------Pts~LD 179 (266)
T 4g1u_C 110 RAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDE----------PTSALD 179 (266)
T ss_dssp GTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECC----------CCSSCC
T ss_pred hhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeC----------ccccCC
Confidence 12344455666677888999999999999999 6 999999999 999999
Q ss_pred hHHHHHHHHHHHhccC
Q psy6098 358 SEVQRTMLELLNQLDG 373 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~ 373 (378)
+..+..+.++|.++..
T Consensus 180 ~~~~~~i~~~l~~l~~ 195 (266)
T 4g1u_C 180 LYHQQHTLRLLRQLTR 195 (266)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998853
No 46
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.70 E-value=1.3e-17 Score=159.31 Aligned_cols=125 Identities=23% Similarity=0.177 Sum_probs=96.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccc-------------ccccchhHHHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELV-------------QKFIGEGSRMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~-------------~~~~~~~~~~v~~~~~~--- 299 (378)
-++.+.+|+.++|+||||||||||+|+|+|+..++ .|.+++.++. +.+.-....++.+++..
T Consensus 22 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~ 101 (381)
T 3rlf_A 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK 101 (381)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHH
T ss_pred eEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHH
Confidence 46788999999999999999999999999999886 7888876552 11110111122222111
Q ss_pred --------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 300 --------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 300 --------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
..++.+.+.......+..||+|++||++++|+ ..|.||+||| |++++|+..+..
T Consensus 102 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDE----------Pts~LD~~~~~~ 171 (381)
T 3rlf_A 102 LAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE----------PLSNLDAALRVQ 171 (381)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEES----------TTTTSCHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEEC----------CCcCCCHHHHHH
Confidence 12444556677778899999999999999999 8999999999 999999999999
Q ss_pred HHHHHHhcc
Q psy6098 364 MLELLNQLD 372 (378)
Q Consensus 364 ~~~lL~~l~ 372 (378)
+.++|.++.
T Consensus 172 l~~~l~~l~ 180 (381)
T 3rlf_A 172 MRIEISRLH 180 (381)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 47
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.69 E-value=1.6e-17 Score=152.18 Aligned_cols=130 Identities=21% Similarity=0.223 Sum_probs=96.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------------------c---ccch----
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------------------K---FIGE---- 288 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------------------~---~~~~---- 288 (378)
-++.+.+|+.++|.||||||||||+|+|+|.+.+. .|.+++.++.. . |+.+
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 104 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL 104 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCccc
Confidence 46789999999999999999999999999999876 78887755420 0 1111
Q ss_pred -hHHHHHHHHHHh------------------hhhhhhhccC-chhhhhHhhhhhhhhhccccc--CCCeEEEEecCcccc
Q psy6098 289 -GSRMVRELFVMA------------------SLKKLAFAHH-PLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIG 346 (378)
Q Consensus 289 -~~~~v~~~~~~a------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~ 346 (378)
...++.+.+... .+..+.+... ....+..||+|++|+++++++ ..|.||||||
T Consensus 105 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE----- 179 (262)
T 1b0u_A 105 WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE----- 179 (262)
T ss_dssp CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEES-----
T ss_pred CCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC-----
Confidence 011233322211 1233334444 566788999999999999998 9999999999
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 347 SSRIESGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 347 ~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
|++++|+..+..+.++|.++...+.|
T Consensus 180 -----Pts~LD~~~~~~~~~~l~~l~~~g~t 205 (262)
T 1b0u_A 180 -----PTSALDPELVGEVLRIMQQLAEEGKT 205 (262)
T ss_dssp -----TTTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred -----CCccCCHHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999988544443
No 48
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.69 E-value=1.6e-17 Score=153.28 Aligned_cols=129 Identities=21% Similarity=0.277 Sum_probs=97.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccc--c-------c---ccchhHH-------HHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELV--Q-------K---FIGEGSR-------MVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~--~-------~---~~~~~~~-------~v~~~ 296 (378)
-+|.+.+|+.++|+||||||||||+|+|+|.+.+. .|.+++.++. . . |+.+... ++.+.
T Consensus 40 isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~en 119 (279)
T 2ihy_A 40 ISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDV 119 (279)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHH
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHH
Confidence 46788899999999999999999999999999876 8888876543 1 0 2222110 23332
Q ss_pred HHH---------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCC
Q psy6098 297 FVM---------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESG 353 (378)
Q Consensus 297 ~~~---------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~ 353 (378)
+.. ..+..+.+.......+..||+|++||++++++ ..|.|||||| |+
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDE----------Pt 189 (279)
T 2ihy_A 120 VISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDE----------PA 189 (279)
T ss_dssp HHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES----------TT
T ss_pred HHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC----------Cc
Confidence 221 11333444555667788999999999999998 9999999999 99
Q ss_pred CCCChHHHHHHHHHHHhccCCCC
Q psy6098 354 SGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 354 ~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
+++|+..+..+.++|.++...+.
T Consensus 190 s~LD~~~~~~l~~~l~~l~~~g~ 212 (279)
T 2ihy_A 190 AGLDFIARESLLSILDSLSDSYP 212 (279)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHCT
T ss_pred cccCHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999988753343
No 49
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.69 E-value=1.7e-17 Score=157.53 Aligned_cols=124 Identities=20% Similarity=0.214 Sum_probs=94.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc---------c---ccch-----hHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ---------K---FIGE-----GSRMVRELFV 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~---------~---~~~~-----~~~~v~~~~~ 298 (378)
-++.+.+|+.++|+||||||||||+|+|+|+..++ .|.+++.++.. + |+.+ ...++.+++.
T Consensus 23 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~ 102 (359)
T 3fvq_A 23 ISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIA 102 (359)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHH
Confidence 46788999999999999999999999999999886 78887765410 0 1111 1112232222
Q ss_pred H-----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 299 M-----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 299 ~-----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
. ..++.+.+.......+..||+|++||++++|+ ..|+|||||| |++++|+.
T Consensus 103 ~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDE----------Pts~LD~~ 172 (359)
T 3fvq_A 103 YGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDE----------PFSALDEQ 172 (359)
T ss_dssp TTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES----------TTTTSCHH
T ss_pred HHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC----------CcccCCHH
Confidence 1 12445566677788899999999999999998 8999999999 99999999
Q ss_pred HHHHHHHHHHhc
Q psy6098 360 VQRTMLELLNQL 371 (378)
Q Consensus 360 ~~~~~~~lL~~l 371 (378)
.+..+.+.|.++
T Consensus 173 ~r~~l~~~l~~~ 184 (359)
T 3fvq_A 173 LRRQIREDMIAA 184 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998888766554
No 50
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.69 E-value=2.6e-17 Score=156.25 Aligned_cols=125 Identities=20% Similarity=0.256 Sum_probs=96.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----c---ccch-----hHHHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----K---FIGE-----GSRMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----~---~~~~-----~~~~v~~~~~~--- 299 (378)
-++.+.+|+.++|.||||||||||+|+|+|+..++ .|.+++.++.. + |+.+ ...++.+++..
T Consensus 34 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~ 113 (355)
T 1z47_A 34 VSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLR 113 (355)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 46788899999999999999999999999999876 78888765421 0 1111 11122222211
Q ss_pred --------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 300 --------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 300 --------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
..++.+.+.......+..||+|++||++++|+ ..|.||+||| |++++|+..+..
T Consensus 114 ~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE----------P~s~LD~~~r~~ 183 (355)
T 1z47_A 114 EKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDE----------PFAAIDTQIRRE 183 (355)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES----------TTCCSSHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC----------CcccCCHHHHHH
Confidence 12344455666777889999999999999998 9999999999 999999999999
Q ss_pred HHHHHHhcc
Q psy6098 364 MLELLNQLD 372 (378)
Q Consensus 364 ~~~lL~~l~ 372 (378)
+.++|+++.
T Consensus 184 l~~~l~~l~ 192 (355)
T 1z47_A 184 LRTFVRQVH 192 (355)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 51
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.68 E-value=1.7e-17 Score=150.04 Aligned_cols=130 Identities=19% Similarity=0.231 Sum_probs=96.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------c---ccch-----hHHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------K---FIGE-----GSRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~---~~~~-----~~~~v~~~~~~ 299 (378)
-++.+.+|+.++|.||||||||||+|+|+|.+.+. .|.+++.++.. . |+.+ ...++.+.+..
T Consensus 25 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~ 104 (240)
T 1ji0_A 25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMM 104 (240)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHG
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHH
Confidence 36788899999999999999999999999999876 78887755421 0 1111 00122232221
Q ss_pred h----------------hhhhh-hhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 300 A----------------SLKKL-AFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 300 a----------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
. .+..+ .+.......+..||+|++|+++++++ ..|.||+||| |++++|+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDE----------Pts~LD~~~ 174 (240)
T 1ji0_A 105 GAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDE----------PSLGLAPIL 174 (240)
T ss_dssp GGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEEC----------TTTTCCHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC----------CcccCCHHH
Confidence 1 12333 24555566778999999999999998 9999999999 999999999
Q ss_pred HHHHHHHHHhccCCCCC
Q psy6098 361 QRTMLELLNQLDGFEAT 377 (378)
Q Consensus 361 ~~~~~~lL~~l~~~~~~ 377 (378)
+..+.++|.++...+.|
T Consensus 175 ~~~l~~~l~~~~~~g~t 191 (240)
T 1ji0_A 175 VSEVFEVIQKINQEGTT 191 (240)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCE
Confidence 99999999988544443
No 52
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.68 E-value=3.2e-17 Score=156.02 Aligned_cols=125 Identities=21% Similarity=0.130 Sum_probs=96.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccc-------------ccccchhHHHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELV-------------QKFIGEGSRMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~-------------~~~~~~~~~~v~~~~~~--- 299 (378)
-++.+.+|+.++|.||||||||||+|+|+|+..++ .|.+++.++. +.+.-....++.+++..
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 101 (359)
T 2yyz_A 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLR 101 (359)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGS
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 46788999999999999999999999999999876 7888876541 11100111123332221
Q ss_pred --------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 300 --------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 300 --------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
..++.+.+.......+..||+|++||++++|+ ..|.||+||| |++++|+..+..
T Consensus 102 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDE----------P~s~LD~~~r~~ 171 (359)
T 2yyz_A 102 ARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDE----------PLSNLDANLRMI 171 (359)
T ss_dssp SSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES----------TTTTSCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC----------CcccCCHHHHHH
Confidence 12344455666777889999999999999998 9999999999 999999999999
Q ss_pred HHHHHHhcc
Q psy6098 364 MLELLNQLD 372 (378)
Q Consensus 364 ~~~lL~~l~ 372 (378)
+.++|+++.
T Consensus 172 l~~~l~~l~ 180 (359)
T 2yyz_A 172 MRAEIKHLQ 180 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 53
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.68 E-value=4.4e-17 Score=148.83 Aligned_cols=129 Identities=17% Similarity=0.168 Sum_probs=96.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------c---ccch-----hHHHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------K---FIGE-----GSRMVRELFVM 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~---~~~~-----~~~~v~~~~~~ 299 (378)
-++.+.+|+.++|+||||||||||+|+|+|.+.+. .|.+++.++.. . |+.+ ...++.+.+..
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 105 (257)
T 1g6h_A 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLI 105 (257)
T ss_dssp ECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHG
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHH
Confidence 36678899999999999999999999999999876 78887754411 0 1111 01122222211
Q ss_pred ------------------------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccC
Q psy6098 300 ------------------------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGS 347 (378)
Q Consensus 300 ------------------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~ 347 (378)
..++.+.+.......+..||+|++|+++++++ ..|.||+|||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDE------ 179 (257)
T 1g6h_A 106 GEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE------ 179 (257)
T ss_dssp GGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES------
T ss_pred HHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC------
Confidence 11333444556677788999999999999998 9999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 348 SRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 348 ~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
|++++|+..+..+.++|.++...+.
T Consensus 180 ----Pts~LD~~~~~~l~~~l~~l~~~g~ 204 (257)
T 1g6h_A 180 ----PIAGVAPGLAHDIFNHVLELKAKGI 204 (257)
T ss_dssp ----TTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred ----CccCCCHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999998854343
No 54
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.67 E-value=1.6e-17 Score=147.28 Aligned_cols=124 Identities=18% Similarity=0.155 Sum_probs=92.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccc--cc---ccch-----hHHHHHHHHHH------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELV--QK---FIGE-----GSRMVRELFVM------ 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~--~~---~~~~-----~~~~v~~~~~~------ 299 (378)
-++.+.+|+.++|.||||||||||+|+|+|.+.+. .|.+++.++. .. |+.+ ...++.+.+..
T Consensus 28 vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 107 (214)
T 1sgw_A 28 ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG 107 (214)
T ss_dssp EEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC
Confidence 36778899999999999999999999999999876 7888775431 00 1111 01122222211
Q ss_pred ---------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHH
Q psy6098 300 ---------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELL 368 (378)
Q Consensus 300 ---------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL 368 (378)
..+..+.+... ...+..||+|++|+++++++ ..|.||+||| |++++|+..+..+.++|
T Consensus 108 ~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDE----------Pts~LD~~~~~~l~~~l 176 (214)
T 1sgw_A 108 VKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDD----------PVVAIDEDSKHKVLKSI 176 (214)
T ss_dssp CCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEES----------TTTTSCTTTHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC----------CCcCCCHHHHHHHHHHH
Confidence 11233344444 66788999999999999998 8999999999 99999999999999999
Q ss_pred Hhcc
Q psy6098 369 NQLD 372 (378)
Q Consensus 369 ~~l~ 372 (378)
.++.
T Consensus 177 ~~~~ 180 (214)
T 1sgw_A 177 LEIL 180 (214)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 55
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.67 E-value=2.1e-17 Score=149.21 Aligned_cols=124 Identities=20% Similarity=0.245 Sum_probs=94.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc--------cccch-----hHHHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ--------KFIGE-----GSRMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~--------~~~~~-----~~~~v~~~~~~--- 299 (378)
-++.+.+ +.++|.||||||||||+|+|+|.+.+. .|.+++.++.. .|+.+ ...++.+.+..
T Consensus 18 isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~ 96 (240)
T 2onk_A 18 VDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR 96 (240)
T ss_dssp EEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCT
T ss_pred eEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHH
Confidence 4677889 999999999999999999999999876 78887754311 01111 00122222111
Q ss_pred ------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHH
Q psy6098 300 ------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML 365 (378)
Q Consensus 300 ------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~ 365 (378)
..++.+.+.......+..||+|++|+++++++ ..|+||+||| |++++|+..+..+.
T Consensus 97 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE----------Pts~LD~~~~~~~~ 166 (240)
T 2onk_A 97 NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDE----------PLSAVDLKTKGVLM 166 (240)
T ss_dssp TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES----------TTSSCCHHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC----------CcccCCHHHHHHHH
Confidence 12344455566677888999999999999998 9999999999 99999999999999
Q ss_pred HHHHhcc
Q psy6098 366 ELLNQLD 372 (378)
Q Consensus 366 ~lL~~l~ 372 (378)
++|.++.
T Consensus 167 ~~l~~l~ 173 (240)
T 2onk_A 167 EELRFVQ 173 (240)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998874
No 56
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.67 E-value=3.8e-17 Score=155.63 Aligned_cols=125 Identities=20% Similarity=0.179 Sum_probs=96.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----c---ccch-----hHHHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----K---FIGE-----GSRMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----~---~~~~-----~~~~v~~~~~~--- 299 (378)
-++.+.+|+.++|.||||||||||+|+|+|+..++ .|.+++.++.. + |+.+ ...++.+++..
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 101 (362)
T 2it1_A 22 INLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLE 101 (362)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 46788999999999999999999999999999876 78888765421 0 1111 11122222211
Q ss_pred --------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 300 --------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 300 --------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
..++.+.+.......+..||+|++||++++|+ ..|.||+||| |++++|+..+..
T Consensus 102 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE----------P~s~LD~~~r~~ 171 (362)
T 2it1_A 102 LRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDE----------PLSNLDALLRLE 171 (362)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES----------GGGGSCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC----------ccccCCHHHHHH
Confidence 12444556667778889999999999999998 9999999999 999999999999
Q ss_pred HHHHHHhcc
Q psy6098 364 MLELLNQLD 372 (378)
Q Consensus 364 ~~~lL~~l~ 372 (378)
+.++|+++.
T Consensus 172 l~~~l~~l~ 180 (362)
T 2it1_A 172 VRAELKRLQ 180 (362)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 57
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.67 E-value=4.9e-17 Score=154.18 Aligned_cols=125 Identities=22% Similarity=0.222 Sum_probs=96.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccc-------------ccccchhHHHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELV-------------QKFIGEGSRMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~-------------~~~~~~~~~~v~~~~~~--- 299 (378)
-++.+.+|+.++|.||||||||||+|+|+|+..++ .|.+++.++. +.+.-....++.+++..
T Consensus 19 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~ 98 (348)
T 3d31_A 19 LSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMR 98 (348)
T ss_dssp EEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 46788999999999999999999999999999876 7888876542 11111111123332221
Q ss_pred -----------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHH
Q psy6098 300 -----------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLE 366 (378)
Q Consensus 300 -----------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~ 366 (378)
..++.+.+.......+..||+|++||++++|+ ..|.||+||| |++++|+..+..+.+
T Consensus 99 ~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDE----------P~s~LD~~~~~~l~~ 168 (348)
T 3d31_A 99 MKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDE----------PLSALDPRTQENARE 168 (348)
T ss_dssp HHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEES----------SSTTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC----------ccccCCHHHHHHHHH
Confidence 12344455667778889999999999999998 8999999999 999999999999999
Q ss_pred HHHhcc
Q psy6098 367 LLNQLD 372 (378)
Q Consensus 367 lL~~l~ 372 (378)
+|+++.
T Consensus 169 ~l~~l~ 174 (348)
T 3d31_A 169 MLSVLH 174 (348)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998874
No 58
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.66 E-value=4.4e-17 Score=155.77 Aligned_cols=125 Identities=22% Similarity=0.212 Sum_probs=95.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----c---ccchhH-----HHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----K---FIGEGS-----RMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----~---~~~~~~-----~~v~~~~~~--- 299 (378)
-++.+.+|+.++|.||||||||||+|+|+|+..++ .|.+++.++.. + |+.+.. .++.+.+..
T Consensus 30 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 109 (372)
T 1v43_A 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLK 109 (372)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 46788999999999999999999999999999876 78888765421 0 111110 122222211
Q ss_pred --------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHH
Q psy6098 300 --------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 363 (378)
Q Consensus 300 --------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~ 363 (378)
..++.+.+.......+..||+|++||++++|+ ..|.||+||| |++++|+..+..
T Consensus 110 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE----------P~s~LD~~~r~~ 179 (372)
T 1v43_A 110 IKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE----------PLSNLDAKLRVA 179 (372)
T ss_dssp --CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES----------TTTTSCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC----------CCccCCHHHHHH
Confidence 12344455666777888999999999999998 9999999999 999999999999
Q ss_pred HHHHHHhcc
Q psy6098 364 MLELLNQLD 372 (378)
Q Consensus 364 ~~~lL~~l~ 372 (378)
+.++|+++.
T Consensus 180 l~~~l~~l~ 188 (372)
T 1v43_A 180 MRAEIKKLQ 188 (372)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 59
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.66 E-value=1.3e-16 Score=144.75 Aligned_cols=125 Identities=17% Similarity=0.206 Sum_probs=91.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccchh----HHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGEG----SRMVRELFV--- 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~~----~~~v~~~~~--- 298 (378)
-++.+.+|+.++|.||||||||||+|+|+|.+.+. .|.+++.++... |+.+. ..++.+.+.
T Consensus 28 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~ 107 (247)
T 2ff7_A 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN 107 (247)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccC
Confidence 36788999999999999999999999999999876 788887654210 11110 012333222
Q ss_pred -------------Hhhhhhh------hhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 299 -------------MASLKKL------AFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 299 -------------~a~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
...+..+ .+.......+..||+|++|+++++++ ..|+||+||| |++++|
T Consensus 108 ~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDE----------Pts~LD 177 (247)
T 2ff7_A 108 PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE----------ATSALD 177 (247)
T ss_dssp TTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECC----------CCSCCC
T ss_pred CCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC----------CcccCC
Confidence 1111111 11122233457899999999999999 8999999999 999999
Q ss_pred hHHHHHHHHHHHhcc
Q psy6098 358 SEVQRTMLELLNQLD 372 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~ 372 (378)
+..+..+.++|.++.
T Consensus 178 ~~~~~~i~~~l~~~~ 192 (247)
T 2ff7_A 178 YESEHVIMRNMHKIC 192 (247)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999999884
No 60
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.66 E-value=8.6e-17 Score=153.99 Aligned_cols=125 Identities=21% Similarity=0.189 Sum_probs=95.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-----------c---ccch-----hHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-----------K---FIGE-----GSRMVREL 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-----------~---~~~~-----~~~~v~~~ 296 (378)
-++.+.+|+.++|+||||||||||+|+|+|+..++ .|.+++.++.. + |+.+ ...++.++
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~en 101 (372)
T 1g29_1 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDN 101 (372)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHH
T ss_pred eEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHH
Confidence 46778899999999999999999999999999876 78777754421 0 1111 11122222
Q ss_pred HHH-----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 297 FVM-----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 297 ~~~-----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+.. ..++.+.+.......+..||+|++||++++|+ ..|.||+||| |++++|
T Consensus 102 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE----------P~s~LD 171 (372)
T 1g29_1 102 IAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDE----------PLSNLD 171 (372)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEEC----------TTTTSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECC----------CCccCC
Confidence 211 12344455666777889999999999999999 9999999999 999999
Q ss_pred hHHHHHHHHHHHhcc
Q psy6098 358 SEVQRTMLELLNQLD 372 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~ 372 (378)
+..+..+.++|+++.
T Consensus 172 ~~~r~~l~~~l~~l~ 186 (372)
T 1g29_1 172 AKLRVRMRAELKKLQ 186 (372)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998874
No 61
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.65 E-value=7.6e-17 Score=147.99 Aligned_cols=129 Identities=20% Similarity=0.177 Sum_probs=96.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------cccchh------HHHHHHHHHHh--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------KFIGEG------SRMVRELFVMA-- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~~~~~~------~~~v~~~~~~a-- 300 (378)
-++.+.+|+.++|.||||||||||+|+|+|.+.+. .|.+++.++.. .|+.+. ..++.+.+...
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~ 105 (266)
T 2yz2_A 26 VSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVK 105 (266)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTT
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHH
Confidence 36789999999999999999999999999999876 78887754310 112111 11333333321
Q ss_pred --------------hhhhhhhc--cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHH
Q psy6098 301 --------------SLKKLAFA--HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 301 --------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
.+..+.+. ......+..||+|++|+++++++ ..|.||+||| |++++|+..+.
T Consensus 106 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE----------Pts~LD~~~~~ 175 (266)
T 2yz2_A 106 NFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE----------PLVGLDREGKT 175 (266)
T ss_dssp TTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES----------TTTTCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC----------ccccCCHHHHH
Confidence 12223334 44556778999999999999998 9999999999 99999999999
Q ss_pred HHHHHHHhccCCCC
Q psy6098 363 TMLELLNQLDGFEA 376 (378)
Q Consensus 363 ~~~~lL~~l~~~~~ 376 (378)
.+.++|.++...+.
T Consensus 176 ~l~~~l~~l~~~g~ 189 (266)
T 2yz2_A 176 DLLRIVEKWKTLGK 189 (266)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC
Confidence 99999998853343
No 62
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.65 E-value=3.5e-16 Score=143.88 Aligned_cols=126 Identities=21% Similarity=0.232 Sum_probs=94.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccchh----HHHHHHHHHHh-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGEG----SRMVRELFVMA- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~~----~~~v~~~~~~a- 300 (378)
-+|.+.+|+.++|.||||||||||+|+|+|++.+. .|.+++.++... |+.+. ..++++.+...
T Consensus 38 vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~ 117 (271)
T 2ixe_A 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL 117 (271)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTC
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhc
Confidence 46789999999999999999999999999999876 788887654210 11110 01233332221
Q ss_pred ----------------h----hhhh--hhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCC
Q psy6098 301 ----------------S----LKKL--AFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGG 356 (378)
Q Consensus 301 ----------------~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~ 356 (378)
. +..+ .+.......+..||+|++||++++|+ ..|.||+||| |++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDE----------Pts~L 187 (271)
T 2ixe_A 118 TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDN----------ATSAL 187 (271)
T ss_dssp SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEES----------TTTTC
T ss_pred ccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEEC----------CccCC
Confidence 1 1111 23334456678999999999999998 8999999999 99999
Q ss_pred ChHHHHHHHHHHHhccC
Q psy6098 357 DSEVQRTMLELLNQLDG 373 (378)
Q Consensus 357 d~~~~~~~~~lL~~l~~ 373 (378)
|+..+..+.++|.++..
T Consensus 188 D~~~~~~i~~~l~~~~~ 204 (271)
T 2ixe_A 188 DAGNQLRVQRLLYESPE 204 (271)
T ss_dssp CHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999998853
No 63
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.64 E-value=7.4e-17 Score=153.46 Aligned_cols=125 Identities=19% Similarity=0.207 Sum_probs=95.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc----------c---ccch-----hHHHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ----------K---FIGE-----GSRMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~----------~---~~~~-----~~~~v~~~~ 297 (378)
-++.+.+|+.++|+||||||||||+|+|+|+..++ .|.+++.++.. + |+.+ ...++.+.+
T Consensus 24 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 103 (353)
T 1oxx_K 24 VNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENI 103 (353)
T ss_dssp EEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHH
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHH
Confidence 46788999999999999999999999999999876 77777754321 0 1111 111222222
Q ss_pred HH-----------------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 298 VM-----------------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 298 ~~-----------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
.. ..++.+.+.......+..||+|++||++++|+ ..|.||+||| |++++|+
T Consensus 104 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDE----------P~s~LD~ 173 (353)
T 1oxx_K 104 AFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDE----------PFSNLDA 173 (353)
T ss_dssp HGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES----------TTTTSCG
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC----------CcccCCH
Confidence 11 12344455666777889999999999999998 9999999999 9999999
Q ss_pred HHHHHHHHHHHhcc
Q psy6098 359 EVQRTMLELLNQLD 372 (378)
Q Consensus 359 ~~~~~~~~lL~~l~ 372 (378)
..+..+.++|+++.
T Consensus 174 ~~r~~l~~~l~~l~ 187 (353)
T 1oxx_K 174 RMRDSARALVKEVQ 187 (353)
T ss_dssp GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998874
No 64
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.64 E-value=2.6e-16 Score=143.90 Aligned_cols=123 Identities=21% Similarity=0.239 Sum_probs=93.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------c-ccchh---HHHHHHHHHHh----
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------K-FIGEG---SRMVRELFVMA---- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~-~~~~~---~~~v~~~~~~a---- 300 (378)
-++.+. |+.++|.||||||||||+|+|+|.+ ++ .|.+++.++.. . |+.+. ..++.+.+...
T Consensus 24 vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~ 101 (263)
T 2pjz_A 24 INLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELK 101 (263)
T ss_dssp EEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHT
T ss_pred eeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhc
Confidence 367889 9999999999999999999999999 76 78887754321 1 22221 11233332211
Q ss_pred ---------hhhhhhhc-cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHH
Q psy6098 301 ---------SLKKLAFA-HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELL 368 (378)
Q Consensus 301 ---------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL 368 (378)
.+..+.+. ......+..||+|++|+++++++ ..|.+|+||| |++++|+..+..+.++|
T Consensus 102 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE----------Pts~LD~~~~~~l~~~L 171 (263)
T 2pjz_A 102 GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDE----------PFENVDAARRHVISRYI 171 (263)
T ss_dssp CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEC----------TTTTCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC----------CccccCHHHHHHHHHHH
Confidence 13334445 55667788999999999999998 9999999999 99999999999999999
Q ss_pred Hhcc
Q psy6098 369 NQLD 372 (378)
Q Consensus 369 ~~l~ 372 (378)
.++.
T Consensus 172 ~~~~ 175 (263)
T 2pjz_A 172 KEYG 175 (263)
T ss_dssp HHSC
T ss_pred HHhc
Confidence 8874
No 65
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.64 E-value=8.2e-17 Score=146.13 Aligned_cols=129 Identities=18% Similarity=0.122 Sum_probs=95.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce-EEEeccCcccc----------cccch-----hHHHHHHHHHH--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-FIRVSGSELVQ----------KFIGE-----GSRMVRELFVM-- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-~i~~~~~~l~~----------~~~~~-----~~~~v~~~~~~-- 299 (378)
-++.+.+|+.++|.||||+|||||+|+|+|.+.+. .|.+++.++.. .|+.+ ...++.+.+..
T Consensus 19 vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 98 (249)
T 2qi9_C 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ 98 (249)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTC
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhh
Confidence 46788999999999999999999999999998774 77777754411 01111 01123332221
Q ss_pred ----------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCe-------EEEEecCccccCCCCCCCCCCChHH
Q psy6098 300 ----------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPS-------IIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 300 ----------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~-------vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
..+..+.+.......+..||+|++|++.++++ ..|+ ||+||| |++++|+..
T Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDE----------Pts~LD~~~ 168 (249)
T 2qi9_C 99 HDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE----------PMNSLDVAQ 168 (249)
T ss_dssp SSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS----------TTTTCCHHH
T ss_pred ccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEEC----------CcccCCHHH
Confidence 12333445555667788999999999999998 7888 999999 999999999
Q ss_pred HHHHHHHHHhccCCCC
Q psy6098 361 QRTMLELLNQLDGFEA 376 (378)
Q Consensus 361 ~~~~~~lL~~l~~~~~ 376 (378)
+..+.++|.++...+.
T Consensus 169 ~~~l~~~l~~l~~~g~ 184 (249)
T 2qi9_C 169 QSALDKILSALSQQGL 184 (249)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999998853343
No 66
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.64 E-value=1e-16 Score=145.84 Aligned_cols=129 Identities=17% Similarity=0.209 Sum_probs=88.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhh--cCce--EEEeccCcccc--------c---ccchhH-----HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHH--TECT--FIRVSGSELVQ--------K---FIGEGS-----RMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~--~~~~--~i~~~~~~l~~--------~---~~~~~~-----~~v~~~~ 297 (378)
-++.+.+|+.++|.||||+|||||+|+|+|. +.+. .|.+++.++.. . |+.+.. .++.+.+
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 101 (250)
T 2d2e_A 22 VNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFL 101 (250)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHH
Confidence 3678889999999999999999999999998 5444 78887755421 0 111100 0122211
Q ss_pred HH--------------------hhhhhhhh-ccCchhhhhH-hhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCC
Q psy6098 298 VM--------------------ASLKKLAF-AHHPLLFWSL-LTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESG 353 (378)
Q Consensus 298 ~~--------------------a~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~ 353 (378)
.. ..+..+.+ .......+.. ||+|++|+++++++ ..|.||+||| |+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDE----------Pt 171 (250)
T 2d2e_A 102 RLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDE----------TD 171 (250)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEEC----------GG
T ss_pred HHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeC----------CC
Confidence 11 01222333 2344556667 99999999999999 8999999999 99
Q ss_pred CCCChHHHHHHHHHHHhccCCCC
Q psy6098 354 SGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 354 ~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
+++|+..+..+.++|.++...+.
T Consensus 172 s~LD~~~~~~l~~~l~~l~~~g~ 194 (250)
T 2d2e_A 172 SGLDIDALKVVARGVNAMRGPNF 194 (250)
T ss_dssp GTTCHHHHHHHHHHHHHHCSTTC
T ss_pred cCCCHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999855443
No 67
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.63 E-value=5.7e-18 Score=156.23 Aligned_cols=137 Identities=23% Similarity=0.290 Sum_probs=92.9
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKP 84 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~ 84 (378)
++.||||||||++||++|++++..++.++++++.++|.|+++++++.+|+.|+...|| ++|+||+|.++..+....
T Consensus 48 lL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~---i~~~Deid~~~~~r~~~~- 123 (274)
T 2x8a_A 48 LLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC---VIFFDEVDALCPRRSDRE- 123 (274)
T ss_dssp EEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE---EEEEETCTTTCC-------
T ss_pred EEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC---eEeeehhhhhhcccCCCc-
Confidence 5789999999999999999999999999999999999999999999999999988898 999999999876432110
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccccccccccccccc---ceeeccC
Q psy6098 85 YYVTKIEELQLIVAEKEQNLRRLQAQ----RNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKK---VLVKVHP 153 (378)
Q Consensus 85 ~~~~~~~~l~~~l~~~~~~l~~l~~~----~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~---~i~~~~~ 153 (378)
. .............+...... ...+.+.++.++ +++.+++||+..+...+|+.. .+++.+.
T Consensus 124 -~----~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD---~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 124 -T----GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID---PAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp --------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC---HHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred -c----hHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC---HhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 0 00000011111111000000 001123344454 678899999999988887743 3444443
No 68
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.63 E-value=1.2e-17 Score=165.91 Aligned_cols=74 Identities=31% Similarity=0.388 Sum_probs=70.2
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEG 81 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g 81 (378)
|+.||||||||++||++|++++.+|+.|+++++.++|.|+++..++.+|+.|+...|+ +|||||+|.++..+..
T Consensus 242 LL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~---iLfLDEId~l~~~~~~ 315 (489)
T 3hu3_A 242 LLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA---IIFIDELDAIAPKREK 315 (489)
T ss_dssp EEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSE---EEEEESHHHHCBCTTS
T ss_pred EEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCc---EEEecchhhhcccccc
Confidence 6789999999999999999999999999999999999999999999999999998888 9999999999987654
No 69
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.62 E-value=1.4e-16 Score=144.36 Aligned_cols=125 Identities=18% Similarity=0.216 Sum_probs=89.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccc-------c---ccchh----HHHHHHH-----
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQ-------K---FIGEG----SRMVREL----- 296 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~-------~---~~~~~----~~~v~~~----- 296 (378)
-++.+.+|+.++|.||||||||||+++|+|.+.+. .|.+++.++.. . |+.+. ..++.+.
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~ 100 (243)
T 1mv5_A 21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGL 100 (243)
T ss_dssp EEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhc
Confidence 36788999999999999999999999999999875 78887754311 0 11110 0022222
Q ss_pred ------------HHHhhhhhhh------hccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCC
Q psy6098 297 ------------FVMASLKKLA------FAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGG 356 (378)
Q Consensus 297 ------------~~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~ 356 (378)
++...+..+. +.......+..||+|++|+++++++ ..|+||+||| |++++
T Consensus 101 ~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDE----------Pts~L 170 (243)
T 1mv5_A 101 EGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDE----------ATASL 170 (243)
T ss_dssp TSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEEC----------CSCSS
T ss_pred cCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEEC----------CcccC
Confidence 2222111110 1111123456899999999999999 8999999999 99999
Q ss_pred ChHHHHHHHHHHHhcc
Q psy6098 357 DSEVQRTMLELLNQLD 372 (378)
Q Consensus 357 d~~~~~~~~~lL~~l~ 372 (378)
|+..+..+.++|.++.
T Consensus 171 D~~~~~~i~~~l~~~~ 186 (243)
T 1mv5_A 171 DSESESMVQKALDSLM 186 (243)
T ss_dssp CSSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999998875
No 70
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.62 E-value=2.4e-16 Score=143.51 Aligned_cols=125 Identities=19% Similarity=0.143 Sum_probs=89.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEecc--------Cccccc-cc------ch---------hHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSG--------SELVQK-FI------GE---------GSR 291 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~--------~~l~~~-~~------~~---------~~~ 291 (378)
-++.+.+|+.++|.||||+|||||+|+|+|.+.+. .|.+.. ..+... .+ +. ...
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~ 103 (253)
T 2nq2_C 24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKS 103 (253)
T ss_dssp EEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCH
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCH
Confidence 36788999999999999999999999999999875 332211 111100 00 00 000
Q ss_pred HHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHH
Q psy6098 292 MVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 369 (378)
Q Consensus 292 ~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~ 369 (378)
...+.. ...+..+.+.......+..||+|++|+++++++ ..|+||+||| |++++|+..+..+.++|.
T Consensus 104 ~~~~~~-~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDE----------Pts~LD~~~~~~l~~~l~ 172 (253)
T 2nq2_C 104 HDYQVA-MQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDE----------PTSALDLANQDIVLSLLI 172 (253)
T ss_dssp HHHHHH-HHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESS----------SSTTSCHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC----------CcccCCHHHHHHHHHHHH
Confidence 001111 112333445555566788999999999999998 9999999999 999999999999999999
Q ss_pred hccC
Q psy6098 370 QLDG 373 (378)
Q Consensus 370 ~l~~ 373 (378)
++..
T Consensus 173 ~l~~ 176 (253)
T 2nq2_C 173 DLAQ 176 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8854
No 71
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.61 E-value=4.7e-16 Score=142.71 Aligned_cols=129 Identities=17% Similarity=0.161 Sum_probs=91.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhc--Cce--EEEeccCcccc--------c---ccchhH-----HHHHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--ECT--FIRVSGSELVQ--------K---FIGEGS-----RMVRELF 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~--~~~--~i~~~~~~l~~--------~---~~~~~~-----~~v~~~~ 297 (378)
-+|.+.+|+.++|.||||||||||+|+|+|.. .+. .|.+++.++.. . |+.+.. .++.+.+
T Consensus 39 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~ 118 (267)
T 2zu0_C 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFL 118 (267)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHH
Confidence 46789999999999999999999999999984 333 78887765421 0 111110 0011111
Q ss_pred H------------------------Hhhhhhhhhc-cCchhhhh-Hhhhhhhhhhccccc--CCCeEEEEecCccccCCC
Q psy6098 298 V------------------------MASLKKLAFA-HHPLLFWS-LLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSR 349 (378)
Q Consensus 298 ~------------------------~a~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r 349 (378)
. ...++.+.+. ......+. .||+|++|+++++++ ..|.||||||
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDE-------- 190 (267)
T 2zu0_C 119 QTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE-------- 190 (267)
T ss_dssp HHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEES--------
T ss_pred HHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeC--------
Confidence 0 0112223333 23344555 599999999999998 8999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 350 IESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 350 ~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
|++++|+..+..+.++|.++...+.
T Consensus 191 --Pts~LD~~~~~~l~~~l~~l~~~g~ 215 (267)
T 2zu0_C 191 --SDSGLDIDALKVVADGVNSLRDGKR 215 (267)
T ss_dssp --TTTTCCHHHHHHHHHHHHTTCCSSC
T ss_pred --CCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999865444
No 72
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.60 E-value=8.9e-16 Score=140.31 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=89.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce-EEEeccCccccc----------ccchh----HHHHHHHHHHh--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-FIRVSGSELVQK----------FIGEG----SRMVRELFVMA-- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-~i~~~~~~l~~~----------~~~~~----~~~v~~~~~~a-- 300 (378)
-++.+.+|+.++|.||||||||||+|+|+|.+.+. .|.+++.++... |+.+. ..++++.+..+
T Consensus 39 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~ 118 (260)
T 2ghi_A 39 INFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL 118 (260)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCT
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCC
Confidence 46789999999999999999999999999998754 788887654210 11110 01233332221
Q ss_pred --------------hhhhhhhcc------CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 301 --------------SLKKLAFAH------HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 301 --------------~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
.+....... .....+..||+|++|+++++++ ..|.||+||| |++++|+
T Consensus 119 ~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE----------Pts~LD~ 188 (260)
T 2ghi_A 119 DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDE----------ATSSLDS 188 (260)
T ss_dssp TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEEC----------CCCTTCH
T ss_pred CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEEC----------ccccCCH
Confidence 111100000 0112356899999999999999 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccC
Q psy6098 359 EVQRTMLELLNQLDG 373 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~ 373 (378)
..+..+.++|.++..
T Consensus 189 ~~~~~i~~~l~~l~~ 203 (260)
T 2ghi_A 189 KTEYLFQKAVEDLRK 203 (260)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998854
No 73
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.60 E-value=7.7e-16 Score=143.55 Aligned_cols=126 Identities=20% Similarity=0.273 Sum_probs=91.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccchh----HHHHHHHH----
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGEG----SRMVRELF---- 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~~----~~~v~~~~---- 297 (378)
-+|.+.+|+.++|+||||||||||+++|+|++.+. .|.+++.++... |+.+. ..++++++
T Consensus 73 isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~ 152 (306)
T 3nh6_A 73 VSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGR 152 (306)
T ss_dssp EEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTS
T ss_pred eeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhc
Confidence 46789999999999999999999999999999886 888888765211 11110 01233332
Q ss_pred ------------HHhhhhhhh------hccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 298 ------------VMASLKKLA------FAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 298 ------------~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
..+.+..+. ...........||+|++||+++||+ ..|+||+||| |++++|
T Consensus 153 ~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDE----------Pts~LD 222 (306)
T 3nh6_A 153 VTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDE----------ATSALD 222 (306)
T ss_dssp TTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEEC----------CSSCCC
T ss_pred ccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEC----------CcccCC
Confidence 222221111 1111223335799999999999999 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccC
Q psy6098 358 SEVQRTMLELLNQLDG 373 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~ 373 (378)
+.....+.++|.++..
T Consensus 223 ~~~~~~i~~~l~~l~~ 238 (306)
T 3nh6_A 223 TSNERAIQASLAKVCA 238 (306)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999988753
No 74
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.60 E-value=5.7e-16 Score=146.18 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=69.8
Q ss_pred CCCCCCCChhHHHHHHHhhcc-CceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT-ECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEG 81 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~-~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g 81 (378)
++.||||||||++|+++|+++ +.+|+.++++++.++|+|++++.++.+|+.|+..+|+ ||||||+|.++..+..
T Consensus 49 LL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~---vl~iDEid~l~~~~~~ 123 (322)
T 1xwi_A 49 LLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPS---IIFIDEIDSLCGSRSE 123 (322)
T ss_dssp EEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSE---EEEEETTTGGGCCSSS
T ss_pred EEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCc---EEEeecHHHhcccccc
Confidence 678999999999999999999 8999999999999999999999999999999998888 9999999999976544
No 75
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.59 E-value=4e-16 Score=145.31 Aligned_cols=74 Identities=22% Similarity=0.169 Sum_probs=59.2
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHH----HhcCCCCCceEEEeehhhhhhccC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMA----RCKGSSRGTEFFTMDVDEAIKSSE 80 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a----~~~~~~~~~ilf~DEid~~~~~~~ 80 (378)
++.||||||||++|+++|++++.+|+.++++++.++|+|+++..++.+|+.| +...|| ||||||||.++...+
T Consensus 40 Ll~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~---vl~iDEiD~~~~~~~ 116 (293)
T 3t15_A 40 GIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMC---CLFINDLDAGAGRMG 116 (293)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCC---CEEEECCC-------
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCe---EEEEechhhhcCCCC
Confidence 4569999999999999999999999999999999999999999999999999 456777 999999999987554
Q ss_pred C
Q psy6098 81 G 81 (378)
Q Consensus 81 g 81 (378)
+
T Consensus 117 ~ 117 (293)
T 3t15_A 117 G 117 (293)
T ss_dssp -
T ss_pred C
Confidence 4
No 76
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.59 E-value=1.6e-15 Score=149.86 Aligned_cols=112 Identities=27% Similarity=0.323 Sum_probs=91.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC--ceEEEeccCcccc
Q psy6098 206 PDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE--CTFIRVSGSELVQ 283 (378)
Q Consensus 206 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~--~~~i~~~~~~l~~ 283 (378)
|...|++++|++++++.+.+++... ..+..++.+++|+||||||||++++++|+.++ .+++.++++++..
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 4456899999999999998877541 23556778999999999999999999999999 7799999999999
Q ss_pred cccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCC
Q psy6098 284 KFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIES 352 (378)
Q Consensus 284 ~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~ 352 (378)
+|+++++. +++.|..+.- .+...|+||||||||+++++|.+.
T Consensus 104 ~~~~~~~~-~~~~f~~a~~--------------------------~~~~~~~il~iDEid~l~~~r~~~ 145 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIG--------------------------LRIKETKEVYEGEVTELTPCETEN 145 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEE--------------------------EEEEEEEEEEEEEEEEEEEC----
T ss_pred HhhhhhHH-HHHHHHHHHh--------------------------hhhcCCcEEEEechhhcccccCCC
Confidence 99999987 8888887610 134689999999999999998653
No 77
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.59 E-value=7.4e-16 Score=143.49 Aligned_cols=86 Identities=21% Similarity=0.281 Sum_probs=66.9
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhh
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLT 319 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~ 319 (378)
.+..++.+++|+||||||||+++++||..++.+++.++++++.+.|+|+++..+++.|..+...
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~---------------- 94 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEI---------------- 94 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHH----------------
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHH----------------
Confidence 4677788999999999999999999999999999999999999999999999999999877211
Q ss_pred hhhhhhhcccccCCCeEEEEecCccccCCCC
Q psy6098 320 ILTNTIVCNFREHAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 320 ~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~ 350 (378)
++...|+||||||||++++++.
T Consensus 95 ---------~~~~~~~vl~iDEiD~~~~~~~ 116 (293)
T 3t15_A 95 ---------IRKGNMCCLFINDLDAGAGRMG 116 (293)
T ss_dssp ---------HTTSSCCCEEEECCC-------
T ss_pred ---------HhcCCCeEEEEechhhhcCCCC
Confidence 1346899999999999998764
No 78
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.59 E-value=1e-15 Score=144.38 Aligned_cols=72 Identities=39% Similarity=0.519 Sum_probs=68.6
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhcc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSS 79 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~ 79 (378)
++.||||||||++|+++|++++.+|+.|+++++.++|+|++++.++.+|+.|+...|+ ||||||+|.++..+
T Consensus 55 Ll~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~---vl~iDEid~l~~~~ 126 (322)
T 3eie_A 55 LLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS---IIFIDQVDALTGTR 126 (322)
T ss_dssp EEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSE---EEEEECGGGGSCC-
T ss_pred EEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCe---EEEechhhhhhccC
Confidence 7889999999999999999999999999999999999999999999999999998888 99999999998764
No 79
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.57 E-value=1.4e-15 Score=147.90 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=57.9
Q ss_pred CCCCCCCCCChhHHHHHHHhhccCceEEEeccccccc-cccch-hHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccC
Q psy6098 3 KPLHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQ-KFIGE-GSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSE 80 (378)
Q Consensus 3 ~~~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~-~~~Ge-se~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~ 80 (378)
+-+++||||||||++||++|.+++++|+.++++++.+ +|+|+ +++.++.+|+.|++ ++++||++.+.....
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~-------~~~~De~d~~~~~~~ 124 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMK-------LVRQQEIAKNRARAE 124 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHH-------HHHHHHHHSCC----
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHh-------cchhhhhhhhhccch
Confidence 3478899999999999999999999999999999998 59995 89999999999986 467899887653322
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Q psy6098 81 GFKPYYVTKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKK 146 (378)
Q Consensus 81 g~~~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~ 146 (378)
+... ..+...+...++........ . ...++..+.++ ++++++++|++.+...+|+..
T Consensus 125 ~~~e--~rvl~~LL~~~dg~~~~~~v-~---a~~TN~~~~ld---~aL~rggr~D~~i~i~lP~~~ 181 (444)
T 1g41_A 125 DVAE--ERILDALLPPAKNQWGEVEN-H---DSHSSTRQAFR---KKLREGQLDDKEIEIDVSAGV 181 (444)
T ss_dssp ------------------------------------------------------------------
T ss_pred hhHH--HHHHHHHHHHhhcccccccc-c---cccccCHHHHH---HHHHcCCCcceEEEEcCCCCc
Confidence 1111 11122222222222111000 0 00145556665 688899999999988887653
No 80
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.56 E-value=1.4e-15 Score=136.48 Aligned_cols=124 Identities=16% Similarity=0.030 Sum_probs=84.6
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccC--cccccccchhHHHHHHHHHH--------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGS--ELVQKFIGEGSRMVRELFVM-------------- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~--~l~~~~~~~~~~~v~~~~~~-------------- 299 (378)
-++.+.+|+.++|.||||||||||+|+|+|.+.+. .|.+++. -+.+...-.. .++.+.+..
T Consensus 27 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~ 105 (229)
T 2pze_A 27 INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP-GTIKENIIFGVSYDEYRYRSVIK 105 (229)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCS-BCHHHHHHTTSCCCHHHHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccC-CCHHHHhhccCCcChHHHHHHHH
Confidence 46788899999999999999999999999999876 6766652 1111100000 022222211
Q ss_pred -hhhhhhhhc------cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHH-HH
Q psy6098 300 -ASLKKLAFA------HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL-LN 369 (378)
Q Consensus 300 -a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~l-L~ 369 (378)
..+...... .........+|+|++||++++++ ..|.||+||| |++++|+..+..+.++ +.
T Consensus 106 ~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDE----------Pts~LD~~~~~~i~~~l~~ 175 (229)
T 2pze_A 106 ACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDS----------PFGYLDVLTEKEIFESCVC 175 (229)
T ss_dssp HTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEES----------TTTTSCHHHHHHHHHHCCC
T ss_pred HhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC----------cccCCCHHHHHHHHHHHHH
Confidence 111110000 01112346899999999999999 9999999999 9999999999999886 45
Q ss_pred hcc
Q psy6098 370 QLD 372 (378)
Q Consensus 370 ~l~ 372 (378)
++.
T Consensus 176 ~~~ 178 (229)
T 2pze_A 176 KLM 178 (229)
T ss_dssp CCT
T ss_pred Hhh
Confidence 553
No 81
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.56 E-value=2.3e-15 Score=135.76 Aligned_cols=121 Identities=20% Similarity=0.157 Sum_probs=84.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccC--cccccccchhHHHHHHHHHH--------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGS--ELVQKFIGEGSRMVRELFVM-------------- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~--~l~~~~~~~~~~~v~~~~~~-------------- 299 (378)
-++.+.+|+.++|+||||||||||+|+|+|.+.+. .|.+++. -+++... ....++.+.+..
T Consensus 24 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~-~~~~tv~enl~~~~~~~~~~~~~~~~ 102 (237)
T 2cbz_A 24 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAW-IQNDSLRENILFGCQLEEPYYRSVIQ 102 (237)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCC-CCSEEHHHHHHTTSCCCTTHHHHHHH
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCc-CCCcCHHHHhhCccccCHHHHHHHHH
Confidence 46789999999999999999999999999999876 6766652 1111100 001112222211
Q ss_pred -hhh-hhhhhc-----cCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHH
Q psy6098 300 -ASL-KKLAFA-----HHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 369 (378)
Q Consensus 300 -a~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~ 369 (378)
..+ ..+... ......+..||+|++||++++++ ..|+||+||| |++++|+..+..+.++|.
T Consensus 103 ~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE----------Pts~LD~~~~~~i~~~l~ 171 (237)
T 2cbz_A 103 ACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD----------PLSAVDAHVGKHIFENVI 171 (237)
T ss_dssp HTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEES----------TTTTSCHHHHHHHHHHTT
T ss_pred HHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC----------cccccCHHHHHHHHHHHH
Confidence 111 011110 11234567899999999999999 8999999999 999999999999999884
No 82
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.56 E-value=1.7e-15 Score=145.65 Aligned_cols=125 Identities=19% Similarity=0.186 Sum_probs=88.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce-EEEeccCccccc----------ccchh----HHHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-FIRVSGSELVQK----------FIGEG----SRMVRELFVM--- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-~i~~~~~~l~~~----------~~~~~----~~~v~~~~~~--- 299 (378)
-++.+.+|+.++|.||||||||||+|+|+|++... .|.+++.++... |+.+. ..++++++..
T Consensus 40 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~ 119 (390)
T 3gd7_A 40 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAA 119 (390)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCC
T ss_pred eeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccc
Confidence 46789999999999999999999999999998722 788888655210 11000 0022222210
Q ss_pred -------hhhhhhhhccCchhhhhH-----------hhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 300 -------ASLKKLAFAHHPLLFWSL-----------LTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 300 -------a~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
..+..+.+.......+.. ||+|++||++++|+ ..|.|||||| |++++|+.
T Consensus 120 ~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDE----------Pts~LD~~ 189 (390)
T 3gd7_A 120 HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDE----------PSAHLDPV 189 (390)
T ss_dssp SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEES----------HHHHSCHH
T ss_pred cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeC----------CccCCCHH
Confidence 011222222222233333 99999999999999 9999999999 99999999
Q ss_pred HHHHHHHHHHhcc
Q psy6098 360 VQRTMLELLNQLD 372 (378)
Q Consensus 360 ~~~~~~~lL~~l~ 372 (378)
.+..+.++|+++.
T Consensus 190 ~~~~l~~~l~~~~ 202 (390)
T 3gd7_A 190 TYQIIRRTLKQAF 202 (390)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 83
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.55 E-value=1e-15 Score=143.10 Aligned_cols=73 Identities=34% Similarity=0.472 Sum_probs=69.3
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSE 80 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~ 80 (378)
++.||||||||++||++|++++.+|+.|+++++.++|+|++++.++.+|+.|+...|+ |+||||+|.++..+.
T Consensus 53 LL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~---il~iDEid~l~~~~~ 125 (301)
T 3cf0_A 53 LFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPC---VLFFDELDSIAKARG 125 (301)
T ss_dssp EEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSE---EEEECSTTHHHHHHT
T ss_pred EEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCe---EEEEEChHHHhhccC
Confidence 5789999999999999999999999999999999999999999999999999988888 999999999997654
No 84
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.54 E-value=5.7e-15 Score=145.55 Aligned_cols=73 Identities=36% Similarity=0.517 Sum_probs=68.6
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSE 80 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~ 80 (378)
++.||||||||++||++|++++.+|+.++++++.+.|+|.++++++.+|+.|+..+|| ||||||+|++...+.
T Consensus 53 LL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~---ILfIDEid~l~~~r~ 125 (476)
T 2ce7_A 53 LLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPC---IVFIDEIDAVGRHRG 125 (476)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSE---EEEEETGGGTCCC--
T ss_pred EEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCC---EEEEechhhhhhhcc
Confidence 5789999999999999999999999999999999999999999999999999999999 999999999987654
No 85
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.54 E-value=2.4e-15 Score=143.86 Aligned_cols=73 Identities=38% Similarity=0.508 Sum_probs=64.7
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSE 80 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~ 80 (378)
++.||||||||++|+++|++++.+|+.|+++++.++|+|++++.++.+|..|+...|+ ||||||+|.+...+.
T Consensus 88 LL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~---vl~iDEid~l~~~r~ 160 (355)
T 2qp9_X 88 LLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPS---IIFIDQVDALTGTRG 160 (355)
T ss_dssp EEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSE---EEEEECGGGGTC---
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCe---EEEEechHhhcccCC
Confidence 6889999999999999999999999999999999999999999999999999988888 999999999987643
No 86
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.54 E-value=2.7e-14 Score=133.43 Aligned_cols=124 Identities=24% Similarity=0.340 Sum_probs=96.8
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhhhcCCCCC---cceeEeCCCCCchHHHHHHHhhhcCc-------eEEEeccCcc
Q psy6098 212 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQP---KGVLLYGPPGTGKTLLARAVAHHTEC-------TFIRVSGSEL 281 (378)
Q Consensus 212 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~ll~Gp~G~GKTtl~~~ia~~~~~-------~~i~~~~~~l 281 (378)
+++|++++++.|.+.+.... .+.....+++..+ ..++|+||||||||++++++|..+.. +++.++..++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 79999999999999887643 3455556665543 36999999999999999999988743 6899999999
Q ss_pred cccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHH
Q psy6098 282 VQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 361 (378)
Q Consensus 282 ~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~ 361 (378)
...+.+.....+...|..+ .++||||||+|.+.+.+.+ ...+....
T Consensus 111 ~~~~~g~~~~~~~~~~~~~--------------------------------~~~vl~iDEid~l~~~~~~--~~~~~~~~ 156 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA--------------------------------MGGVLFIDEAYYLYRPDNE--RDYGQEAI 156 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH--------------------------------TTSEEEEETGGGSCCCC-----CCTHHHH
T ss_pred hhhcccccHHHHHHHHHhc--------------------------------CCCEEEEEChhhhccCCCc--ccccHHHH
Confidence 9999998888888888766 6789999999999977632 33455666
Q ss_pred HHHHHHHHh
Q psy6098 362 RTMLELLNQ 370 (378)
Q Consensus 362 ~~~~~lL~~ 370 (378)
..+.+++..
T Consensus 157 ~~Ll~~l~~ 165 (309)
T 3syl_A 157 EILLQVMEN 165 (309)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666654
No 87
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.53 E-value=5.5e-15 Score=148.22 Aligned_cols=124 Identities=15% Similarity=0.087 Sum_probs=92.3
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcc---cccccchhHHHHHHHHHH--------------
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL---VQKFIGEGSRMVRELFVM-------------- 299 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l---~~~~~~~~~~~v~~~~~~-------------- 299 (378)
++.+.+|+.++|+||||||||||+|+|+|.+.+. .|.+.+..+ .+.........+.+.+..
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~ 367 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFE 367 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHH
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHH
Confidence 4557899999999999999999999999999876 555544332 111000001112222221
Q ss_pred hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 300 ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 300 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
..+..+.+.......+..||+|++||+.+|++ ..|.|||||| ||+++|+..+..+.++|.++.
T Consensus 368 ~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDE----------PT~gLD~~~~~~i~~~l~~l~ 432 (538)
T 3ozx_A 368 EVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQ----------PSSYLDVEERYIVAKAIKRVT 432 (538)
T ss_dssp HTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHH
Confidence 12344455666777889999999999999998 9999999999 999999999999999999874
No 88
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.53 E-value=1.1e-14 Score=148.02 Aligned_cols=126 Identities=19% Similarity=0.235 Sum_probs=91.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccchh----HHHHHHHHHH--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGEG----SRMVRELFVM-- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~~----~~~v~~~~~~-- 299 (378)
-++.+++|+.++|.||||+|||||+++|+|.+.++ .|.++|.++... |+.+. ..++++++..
T Consensus 362 i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~ 441 (582)
T 3b5x_A 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAA 441 (582)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccC
Confidence 36778999999999999999999999999999876 888888655210 11111 1134443332
Q ss_pred ---------------hhhhhhh------hccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCC
Q psy6098 300 ---------------ASLKKLA------FAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGG 356 (378)
Q Consensus 300 ---------------a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~ 356 (378)
+.+..+. ...........+|+|++||+++||+ .+|+|++||| |++++
T Consensus 442 ~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDE----------pts~L 511 (582)
T 3b5x_A 442 EGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDE----------ATSAL 511 (582)
T ss_pred CCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC----------ccccC
Confidence 2111110 0111112335899999999999999 8999999999 99999
Q ss_pred ChHHHHHHHHHHHhccC
Q psy6098 357 DSEVQRTMLELLNQLDG 373 (378)
Q Consensus 357 d~~~~~~~~~lL~~l~~ 373 (378)
|+..+..+.+.|.++..
T Consensus 512 D~~~~~~i~~~l~~~~~ 528 (582)
T 3b5x_A 512 DTESERAIQAALDELQK 528 (582)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 99999999999988754
No 89
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.52 E-value=1e-14 Score=148.39 Aligned_cols=126 Identities=22% Similarity=0.257 Sum_probs=91.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccchh----HHHHHHHHH---
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGEG----SRMVRELFV--- 298 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~~----~~~v~~~~~--- 298 (378)
-++.+++|+.++|.||||+|||||+++|+|.+.++ .|.++|.++... |+.+. ..++++++.
T Consensus 362 v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~ 441 (582)
T 3b60_A 362 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYAR 441 (582)
T ss_dssp EEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTT
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccC
Confidence 36778999999999999999999999999999876 888888655210 11110 012333332
Q ss_pred --------------Hhhhhhhh------hccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCC
Q psy6098 299 --------------MASLKKLA------FAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGG 356 (378)
Q Consensus 299 --------------~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~ 356 (378)
.+.+..+. ...........+|+|++||+++||+ .+|+|++||| |++++
T Consensus 442 ~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDE----------pts~L 511 (582)
T 3b60_A 442 TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDE----------ATSAL 511 (582)
T ss_dssp TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEET----------TTSSC
T ss_pred CCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEC----------ccccC
Confidence 22211111 1112222345799999999999999 8999999999 99999
Q ss_pred ChHHHHHHHHHHHhccC
Q psy6098 357 DSEVQRTMLELLNQLDG 373 (378)
Q Consensus 357 d~~~~~~~~~lL~~l~~ 373 (378)
|+..+..+.+.|.++..
T Consensus 512 D~~~~~~i~~~l~~~~~ 528 (582)
T 3b60_A 512 DTESERAIQAALDELQK 528 (582)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 99999999999988754
No 90
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.52 E-value=6.7e-15 Score=162.26 Aligned_cols=72 Identities=18% Similarity=0.122 Sum_probs=61.0
Q ss_pred CCCCCCCChhHHHHHHHhhccCc---e--EEEecc--cccc--------ccccch----hHHHHHHHHHHHHhcCCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTEC---T--FIRVSG--SELV--------QKFIGE----GSRMVRELFVMARCKGSSRGT 65 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~---~--~~~v~~--~~~~--------~~~~Ge----se~~~~~~f~~a~~~~~~~~~ 65 (378)
++.||||||||++|+++|.+... + |+.+.. ++++ ++|+++ +|+.++.+|.+||+.+||
T Consensus 1086 l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~--- 1162 (1706)
T 3cmw_A 1086 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD--- 1162 (1706)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS---
T ss_pred EEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCe---
Confidence 45699999999999999987743 3 555544 3444 889999 999999999999999999
Q ss_pred eEEEeehhhhhhcc
Q psy6098 66 EFFTMDVDEAIKSS 79 (378)
Q Consensus 66 ilf~DEid~~~~~~ 79 (378)
++|+||++++++.+
T Consensus 1163 ~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1163 VIVVDSVAALTPKA 1176 (1706)
T ss_dssp EEEESCGGGCCCHH
T ss_pred EEEeCchHhcCccc
Confidence 99999999999874
No 91
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.50 E-value=1.9e-14 Score=146.77 Aligned_cols=126 Identities=20% Similarity=0.192 Sum_probs=91.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccc------------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIG------------------ 287 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~------------------ 287 (378)
-++.+++|+.++|.||||+|||||+++|+|.+.+. .|.++|.++... |+.
T Consensus 363 isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~ 442 (595)
T 2yl4_A 363 FSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGA 442 (595)
T ss_dssp EEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcC
Confidence 46778999999999999999999999999999876 888888655210 111
Q ss_pred -----hhHHHHHHHHHHhhhhhhhh------ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCC
Q psy6098 288 -----EGSRMVRELFVMASLKKLAF------AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGS 354 (378)
Q Consensus 288 -----~~~~~v~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~ 354 (378)
.+...+.++++.+.+..+.. ..........+|+|++||++++|+ .+|+|++||| |++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDE----------pts 512 (595)
T 2yl4_A 443 DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDE----------ATS 512 (595)
T ss_dssp SSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEEC----------CCS
T ss_pred CCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC----------ccc
Confidence 11122233333332222111 111112236799999999999999 8999999999 999
Q ss_pred CCChHHHHHHHHHHHhccC
Q psy6098 355 GGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 355 ~~d~~~~~~~~~lL~~l~~ 373 (378)
++|+..+..+.+.|.++..
T Consensus 513 ~LD~~~~~~i~~~l~~~~~ 531 (595)
T 2yl4_A 513 ALDAENEYLVQEALDRLMD 531 (595)
T ss_dssp SCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999999988754
No 92
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.50 E-value=6e-15 Score=145.13 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=60.6
Q ss_pred CCCCCCCChhHHHHHHHhhcc-CceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT-ECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEG 81 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~-~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g 81 (378)
+|.||||||||++|+++|+++ +.+|+.|++++++++|+|++++.++.+|+.|+...|+ ||||||+|.++..+..
T Consensus 171 LL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~---vl~iDEid~l~~~~~~ 245 (444)
T 2zan_A 171 LLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPS---IIFIDEIDSLCGSRSE 245 (444)
T ss_dssp EEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSE---EEEESCTTTTCCCSSC
T ss_pred EEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCe---EEEEechHhhccCCCC
Confidence 678999999999999999999 8999999999999999999999999999999988888 9999999999876543
No 93
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.50 E-value=2.2e-14 Score=145.84 Aligned_cols=126 Identities=13% Similarity=0.158 Sum_probs=92.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccch-----------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGE----------------- 288 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~----------------- 288 (378)
-++.+++|+.++|+||||+|||||+++|+|.+.+. .|.+++.++... |+.+
T Consensus 362 isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~ 441 (587)
T 3qf4_A 362 VNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR 441 (587)
T ss_dssp EEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccC
Confidence 35678999999999999999999999999999886 899988776321 1111
Q ss_pred ---hHHHHHHHHHHhhhhhh------hhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 289 ---GSRMVRELFVMASLKKL------AFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 289 ---~~~~v~~~~~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
+...+.+..+.+.+... +...........+|+|++||+++||+ .+|+|++||| |++++|
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDE----------pts~LD 511 (587)
T 3qf4_A 442 EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDD----------CTSSVD 511 (587)
T ss_dssp SSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEES----------CCTTSC
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEC----------CcccCC
Confidence 11122222222222211 11222233445799999999999999 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccC
Q psy6098 358 SEVQRTMLELLNQLDG 373 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~ 373 (378)
+.....+.+.|.++..
T Consensus 512 ~~~~~~i~~~l~~~~~ 527 (587)
T 3qf4_A 512 PITEKRILDGLKRYTK 527 (587)
T ss_dssp HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999988753
No 94
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.49 E-value=9.4e-15 Score=135.37 Aligned_cols=122 Identities=16% Similarity=0.068 Sum_probs=82.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccC--cccccccchhHHHHHHHHH--------------H
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGS--ELVQKFIGEGSRMVRELFV--------------M 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~--~l~~~~~~~~~~~v~~~~~--------------~ 299 (378)
-+|.+.+|+.++|.||||||||||+|+|+|.+.+. .|.+++. -+++...-.. .++++.+. .
T Consensus 57 isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~ 135 (290)
T 2bbs_A 57 INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP-GTIKENIIGVSYDEYRYRSVIKA 135 (290)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCS-SBHHHHHHTTCCCHHHHHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCc-ccHHHHhhCcccchHHHHHHHHH
Confidence 46788999999999999999999999999999876 6666552 1111110000 02222221 1
Q ss_pred hhhhhhhhcc-------CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHH-HH
Q psy6098 300 ASLKKLAFAH-------HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL-LN 369 (378)
Q Consensus 300 a~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~l-L~ 369 (378)
..+... ... ........+|+|++|+++++++ ..|.||+||| |++++|+..+..+.++ +.
T Consensus 136 ~~l~~~-l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDE----------Pts~LD~~~~~~i~~~ll~ 204 (290)
T 2bbs_A 136 CQLEED-ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDS----------PFGYLDVLTEKEIFESCVC 204 (290)
T ss_dssp TTCHHH-HHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEES----------TTTTCCHHHHHHHHHHCCC
T ss_pred hChHHH-HHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEEC----------CcccCCHHHHHHHHHHHHH
Confidence 111000 000 1112346899999999999999 9999999999 9999999999999886 44
Q ss_pred hc
Q psy6098 370 QL 371 (378)
Q Consensus 370 ~l 371 (378)
++
T Consensus 205 ~~ 206 (290)
T 2bbs_A 205 KL 206 (290)
T ss_dssp CC
T ss_pred Hh
Confidence 44
No 95
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.49 E-value=5e-14 Score=130.19 Aligned_cols=74 Identities=46% Similarity=0.635 Sum_probs=69.8
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEG 81 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g 81 (378)
++.||||||||++|+++|++++.+|+.++++++.+.|.|+++..++.+|..|+...|+ ||||||+|.++..+.+
T Consensus 55 ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---vl~iDEid~l~~~~~~ 128 (285)
T 3h4m_A 55 LLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPS---IIFIDEIDAIAAKRTD 128 (285)
T ss_dssp EEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSE---EEEEETTHHHHBCCSS
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCe---EEEEECHHHhcccCcc
Confidence 5789999999999999999999999999999999999999999999999999998888 9999999999876554
No 96
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.49 E-value=2.6e-14 Score=137.02 Aligned_cols=137 Identities=23% Similarity=0.385 Sum_probs=93.6
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhhh-cCC-CCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCccccc-ccch
Q psy6098 212 MVGGLDNQIKEIKEVIELPVKHPELFDA-LGI-AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK-FIGE 288 (378)
Q Consensus 212 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~-~~~-~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~-~~~~ 288 (378)
.++|++.+++.+...+............ ... .++.+++|+||||||||+++++||..++.+++.+++.++... |.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 4789999999999887543222111000 111 256689999999999999999999999999999999887644 6666
Q ss_pred h-HHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHH
Q psy6098 289 G-SRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLEL 367 (378)
Q Consensus 289 ~-~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~l 367 (378)
. ...+...|..+... +....|+||||||||++.+.|.++..+.+.........|
T Consensus 96 ~~~~~~~~~~~~~~~~-------------------------~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~L 150 (363)
T 3hws_A 96 DVENIIQKLLQKCDYD-------------------------VQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQAL 150 (363)
T ss_dssp HHTHHHHHHHHHTTTC-------------------------HHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhhh-------------------------HHhcCCcEEEEeChhhhcccccccccccccchHHHHHHH
Confidence 5 44555555543100 012368899999999999988665555555544566677
Q ss_pred HHhccC
Q psy6098 368 LNQLDG 373 (378)
Q Consensus 368 L~~l~~ 373 (378)
|+.|++
T Consensus 151 l~~leg 156 (363)
T 3hws_A 151 LKLIEG 156 (363)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 777764
No 97
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.49 E-value=4.7e-15 Score=146.49 Aligned_cols=74 Identities=28% Similarity=0.250 Sum_probs=67.0
Q ss_pred CCCCCCCCChhHHHHHHHhhccC--ceEEEeccccccccccchhHHHHHHHHHHH---HhcCCCCCceEEEeehhhhhhc
Q psy6098 4 PLHPTWIVSGKTLLARAVAHHTE--CTFIRVSGSELVQKFIGEGSRMVRELFVMA---RCKGSSRGTEFFTMDVDEAIKS 78 (378)
Q Consensus 4 ~~~~~pPGtGKt~~a~~~a~~~~--~~~~~v~~~~~~~~~~Gese~~~~~~f~~a---~~~~~~~~~ilf~DEid~~~~~ 78 (378)
-++.||||||||++|+++|++++ .+|+.++++++.++|+|++++ ++++|+.| +...|| ||||||+|+++..
T Consensus 66 iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~---il~iDEid~l~~~ 141 (456)
T 2c9o_A 66 VLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRIKETK---EVYEGEVTELTPC 141 (456)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEEEEEEEE---EEEEEEEEEEEEC
T ss_pred EEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhhhhcCCc---EEEEechhhcccc
Confidence 36789999999999999999999 999999999999999999998 99999999 777888 9999999999987
Q ss_pred cCC
Q psy6098 79 SEG 81 (378)
Q Consensus 79 ~~g 81 (378)
+.+
T Consensus 142 r~~ 144 (456)
T 2c9o_A 142 ETE 144 (456)
T ss_dssp ---
T ss_pred cCC
Confidence 543
No 98
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.49 E-value=3.2e-14 Score=144.46 Aligned_cols=126 Identities=21% Similarity=0.219 Sum_probs=92.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccch-----------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGE----------------- 288 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~----------------- 288 (378)
-++.+++|+.++|+||||+|||||+++|+|.+.++ .|.++|.++... |+.+
T Consensus 360 isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~ 439 (578)
T 4a82_A 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR 439 (578)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGC
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCC
Confidence 35778999999999999999999999999999886 888888665221 1111
Q ss_pred ---hHHHHHHHHHHhhhhhh------hhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 289 ---GSRMVRELFVMASLKKL------AFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 289 ---~~~~v~~~~~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
....+.+..+.+.+... +...........+|+|++||+++||+ .+|+|++||| |++++|
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDE----------pts~LD 509 (578)
T 4a82_A 440 PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDE----------ATSALD 509 (578)
T ss_dssp SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEES----------TTTTCC
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEEC----------ccccCC
Confidence 11122233332222111 11222233445899999999999999 8999999999 999999
Q ss_pred hHHHHHHHHHHHhccC
Q psy6098 358 SEVQRTMLELLNQLDG 373 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~~ 373 (378)
+..+..+.+.|.++..
T Consensus 510 ~~~~~~i~~~l~~~~~ 525 (578)
T 4a82_A 510 LESESIIQEALDVLSK 525 (578)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999988753
No 99
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.48 E-value=2.6e-14 Score=132.91 Aligned_cols=73 Identities=38% Similarity=0.555 Sum_probs=68.1
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSE 80 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~ 80 (378)
++.||||||||++|+++|++++.+|+.++++++.++|.|++++.++.+|..|+...|+ ||||||+|.++..+.
T Consensus 58 ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---vl~iDEid~l~~~~~ 130 (297)
T 3b9p_A 58 LLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPS---IIFIDEVDSLLSERS 130 (297)
T ss_dssp EEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSE---EEEEETGGGTSBCC-
T ss_pred EEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCc---EEEeccHHHhccccc
Confidence 5789999999999999999999999999999999999999999999999999988877 999999999987643
No 100
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.48 E-value=2.3e-14 Score=143.95 Aligned_cols=126 Identities=19% Similarity=0.103 Sum_probs=90.5
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EE---------EeccCcccc----------------cccchhH---
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FI---------RVSGSELVQ----------------KFIGEGS--- 290 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i---------~~~~~~l~~----------------~~~~~~~--- 290 (378)
.+.+|+.++|+||||||||||+|+|+|.+.++ .+ .+++..+.. .+.....
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 122 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAV 122 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhh
Confidence 57899999999999999999999999998764 21 122222100 0000000
Q ss_pred -HHHHHHHHH--------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 291 -RMVRELFVM--------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 291 -~~v~~~~~~--------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
.++.+.+.. ..+..+.+.......+..||+|++|++++|++ ..|.||+||| ||+++|+.
T Consensus 123 ~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDE----------PTs~LD~~ 192 (538)
T 1yqt_A 123 KGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDE----------PSSYLDIR 192 (538)
T ss_dssp CSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES----------TTTTCCHH
T ss_pred hccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC----------CcccCCHH
Confidence 022222211 12444556666777889999999999999998 9999999999 99999999
Q ss_pred HHHHHHHHHHhccCCCC
Q psy6098 360 VQRTMLELLNQLDGFEA 376 (378)
Q Consensus 360 ~~~~~~~lL~~l~~~~~ 376 (378)
.+..+.++|+++...+.
T Consensus 193 ~~~~l~~~L~~l~~~g~ 209 (538)
T 1yqt_A 193 QRLNAARAIRRLSEEGK 209 (538)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999998854443
No 101
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.47 E-value=2.6e-14 Score=136.70 Aligned_cols=72 Identities=35% Similarity=0.608 Sum_probs=67.8
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhcc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSS 79 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~ 79 (378)
++.||||||||++|+++|++++.+|+.++++++.++|.|++++.++.+|..|+...|+ ||||||+|.++..+
T Consensus 121 Ll~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~---vl~iDEid~l~~~~ 192 (357)
T 3d8b_A 121 LLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPA---VIFIDEIDSLLSQR 192 (357)
T ss_dssp EEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSE---EEEEETHHHHTBC-
T ss_pred EEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCe---EEEEeCchhhhccC
Confidence 5789999999999999999999999999999999999999999999999999987777 99999999998754
No 102
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.47 E-value=3.2e-14 Score=145.02 Aligned_cols=125 Identities=19% Similarity=0.249 Sum_probs=91.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccchh----HHHHHHHHHHh-
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGEG----SRMVRELFVMA- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~~----~~~v~~~~~~a- 300 (378)
-++.+++|+.++|.||||+|||||+++|+|.+.++ .|.++|.++... |+.+. ..++++++...
T Consensus 374 isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~ 453 (598)
T 3qf4_B 374 ITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGN 453 (598)
T ss_dssp EEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCC
Confidence 35779999999999999999999999999999886 888888765321 11110 11344443321
Q ss_pred ---------------hhhhh------hhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 301 ---------------SLKKL------AFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 301 ---------------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
.+... +...........+|+|++||+++||+ .+|+|++||| |++++|
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDE----------pts~LD 523 (598)
T 3qf4_B 454 PGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDE----------ATSNVD 523 (598)
T ss_dssp TTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECC----------CCTTCC
T ss_pred CCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC----------CccCCC
Confidence 11110 01111222335799999999999999 8999999999 999999
Q ss_pred hHHHHHHHHHHHhcc
Q psy6098 358 SEVQRTMLELLNQLD 372 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~ 372 (378)
+.....+.+.|.++.
T Consensus 524 ~~~~~~i~~~l~~~~ 538 (598)
T 3qf4_B 524 TKTEKSIQAAMWKLM 538 (598)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999998875
No 103
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.7e-14 Score=144.86 Aligned_cols=127 Identities=17% Similarity=0.082 Sum_probs=91.6
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EE-----------EeccCcccc----------------cccchhH-
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FI-----------RVSGSELVQ----------------KFIGEGS- 290 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i-----------~~~~~~l~~----------------~~~~~~~- 290 (378)
.+.+|+.++|+||||+|||||+|+|+|++.++ .| .+.+.++.. .+.....
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR 178 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence 56789999999999999999999999998875 22 122222100 0000000
Q ss_pred ------HHHHHHHH----------HhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCC
Q psy6098 291 ------RMVRELFV----------MASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIES 352 (378)
Q Consensus 291 ------~~v~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~ 352 (378)
..+.+.+. ...+..+.+.......+..||+|++|++++|++ ..|.||+||| |
T Consensus 179 ~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDE----------P 248 (608)
T 3j16_B 179 AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDE----------P 248 (608)
T ss_dssp HCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEEC----------T
T ss_pred hhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEEC----------c
Confidence 01111111 112445556667778889999999999999998 8999999999 9
Q ss_pred CCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 353 GSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 353 ~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
++++|+..+..+.++|+++...+.|
T Consensus 249 ts~LD~~~~~~l~~~l~~l~~~g~t 273 (608)
T 3j16_B 249 SSYLDVKQRLNAAQIIRSLLAPTKY 273 (608)
T ss_dssp TTTCCHHHHHHHHHHHHGGGTTTCE
T ss_pred ccCCCHHHHHHHHHHHHHHHhCCCE
Confidence 9999999999999999999766543
No 104
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.47 E-value=3e-14 Score=142.87 Aligned_cols=122 Identities=16% Similarity=0.087 Sum_probs=87.9
Q ss_pred CCCCcceeEeCCCCCchHHHHHHHhhhcCce--EE-----------EeccCcccc----------------cccchhH--
Q psy6098 242 IAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FI-----------RVSGSELVQ----------------KFIGEGS-- 290 (378)
Q Consensus 242 ~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i-----------~~~~~~l~~----------------~~~~~~~-- 290 (378)
..+|+.++|+||||+|||||+|+|+|.+.++ .+ .+.+.++.. .++....
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 3467899999999999999999999998775 23 233332210 0110000
Q ss_pred --HHHHHHHHH--------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCCh
Q psy6098 291 --RMVRELFVM--------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDS 358 (378)
Q Consensus 291 --~~v~~~~~~--------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~ 358 (378)
..+.+.+.. ..+..+.+.......+..||+|++|++++|++ ..|.||+||| |++++|+
T Consensus 102 ~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDE----------Pts~LD~ 171 (538)
T 3ozx_A 102 LKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQ----------PSSYLDV 171 (538)
T ss_dssp CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES----------TTTTCCH
T ss_pred ccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC----------CcccCCH
Confidence 012222111 12344555666777889999999999999999 8999999999 9999999
Q ss_pred HHHHHHHHHHHhccC
Q psy6098 359 EVQRTMLELLNQLDG 373 (378)
Q Consensus 359 ~~~~~~~~lL~~l~~ 373 (378)
..+..+.++|+++..
T Consensus 172 ~~~~~l~~~l~~l~~ 186 (538)
T 3ozx_A 172 RERMNMAKAIRELLK 186 (538)
T ss_dssp HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998864
No 105
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.46 E-value=5e-14 Score=128.35 Aligned_cols=73 Identities=32% Similarity=0.484 Sum_probs=68.4
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSE 80 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~ 80 (378)
++.||||||||++|+++|++++.+|+.++++++.+.+.|++++.++.+|+.|+...|+ ++|+||+|.+...+.
T Consensus 49 ll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---il~iDeid~l~~~~~ 121 (257)
T 1lv7_A 49 LMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPC---IIFIDEIDAVGRQRG 121 (257)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSE---EEEETTHHHHTCCCS
T ss_pred EEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCe---eehhhhhhhhccCCC
Confidence 5789999999999999999999999999999999999999999999999999987777 999999999987644
No 106
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.46 E-value=2.6e-14 Score=143.94 Aligned_cols=104 Identities=26% Similarity=0.374 Sum_probs=69.6
Q ss_pred CcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccc-----
Q psy6098 209 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ----- 283 (378)
Q Consensus 209 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~----- 283 (378)
-+++++|++++++.+.+.+.... .++.+ ++..++|+|||||||||++++|++.++++++.++...+..
T Consensus 79 l~~di~G~~~vk~~i~~~~~l~~------~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAVQK------LTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHH------HSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHHhccHHHHHHHHHHHHHHHH------hcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 34579999999999987765422 12233 6789999999999999999999999999988887765432
Q ss_pred ----cccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCC
Q psy6098 284 ----KFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSR 349 (378)
Q Consensus 284 ----~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r 349 (378)
.|+|.....+.+.|..+ ....| |+||||||++.+.+
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a-----------------------------~~~~~-vl~lDEid~l~~~~ 191 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKA-----------------------------GKLNP-VFLLDEIDKMSSDF 191 (543)
T ss_dssp ------------CHHHHHHTT-----------------------------CSSSE-EEEEEESSSCC---
T ss_pred hHHHHHhccCchHHHHHHHHh-----------------------------hccCC-EEEEhhhhhhhhhh
Confidence 34444444444444443 33445 99999999998764
No 107
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.46 E-value=2.9e-14 Score=144.88 Aligned_cols=126 Identities=21% Similarity=0.136 Sum_probs=90.7
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EE---------EeccCcccc----------------cccchhH---
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FI---------RVSGSELVQ----------------KFIGEGS--- 290 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i---------~~~~~~l~~----------------~~~~~~~--- 290 (378)
.+.+|+.++|+||||+|||||+|+|+|.+.++ .+ .+.+.++.. .++....
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 192 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAV 192 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTC
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhc
Confidence 57899999999999999999999999998765 22 122322210 0000000
Q ss_pred -HHHHHHHHH--------hhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 291 -RMVRELFVM--------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 291 -~~v~~~~~~--------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
.++.+.+.. ..+..+.+.......+..||+|++|++.+|++ ..|.|||||| |++++|+.
T Consensus 193 ~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDE----------PTs~LD~~ 262 (607)
T 3bk7_A 193 KGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDE----------PSSYLDIR 262 (607)
T ss_dssp CSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEC----------TTTTCCHH
T ss_pred cccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC----------CcccCCHH
Confidence 023333221 12444555666777888999999999999999 9999999999 99999999
Q ss_pred HHHHHHHHHHhccCCCC
Q psy6098 360 VQRTMLELLNQLDGFEA 376 (378)
Q Consensus 360 ~~~~~~~lL~~l~~~~~ 376 (378)
.+..+.++|+++...+.
T Consensus 263 ~~~~l~~~L~~l~~~g~ 279 (607)
T 3bk7_A 263 QRLKVARVIRRLANEGK 279 (607)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999998854343
No 108
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.46 E-value=3.2e-14 Score=129.60 Aligned_cols=72 Identities=33% Similarity=0.433 Sum_probs=62.6
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhcc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSS 79 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~ 79 (378)
++.||||||||++|+++|++++.+|+.++++++.+.|.|+++..++.+|+.|+...|+ ||||||+|.++..+
T Consensus 43 ll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---vl~iDeid~l~~~~ 114 (262)
T 2qz4_A 43 LLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPC---IVYIDEIDAVGKKR 114 (262)
T ss_dssp EEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSE---EEEEECC-------
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCe---EEEEeCcchhhccc
Confidence 5789999999999999999999999999999999999999999999999999988777 99999999998654
No 109
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.46 E-value=3e-14 Score=144.80 Aligned_cols=124 Identities=18% Similarity=0.079 Sum_probs=88.6
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEecc--Ccccccc---cchhHH-HHHHH---------HHHhh
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSG--SELVQKF---IGEGSR-MVREL---------FVMAS 301 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~--~~l~~~~---~~~~~~-~v~~~---------~~~a~ 301 (378)
++.+.+|+.++|.||||+|||||+|+|+|.+.+. .|.+.. .-+++.. ...+.. .+... .....
T Consensus 376 ~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 455 (607)
T 3bk7_A 376 PGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTEL 455 (607)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHH
Confidence 3456789999999999999999999999998765 232211 0011110 111111 11110 01112
Q ss_pred hhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 302 LKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
+..+.+.......+..||+|++|++.+|++ ..|.||+||| |++++|+..+..+.++|+++.
T Consensus 456 l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDE----------Pt~~LD~~~~~~l~~~l~~l~ 518 (607)
T 3bk7_A 456 LKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDE----------PSAYLDVEQRLAVSRAIRHLM 518 (607)
T ss_dssp HHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHH
Confidence 444556666778889999999999999998 8999999999 999999999999999999874
No 110
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.46 E-value=3.5e-14 Score=137.37 Aligned_cols=72 Identities=38% Similarity=0.520 Sum_probs=59.8
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhcc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSS 79 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~ 79 (378)
++.||||||||++|+++|.+++.+|+.++++++.++|+|+++..++.+|+.|+...|+ ||||||||.++..+
T Consensus 152 LL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~---il~iDEid~l~~~~ 223 (389)
T 3vfd_A 152 LLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPS---IIFIDQVDSLLCER 223 (389)
T ss_dssp EEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSE---EEEEETGGGGC---
T ss_pred EEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCe---EEEEECchhhcccC
Confidence 6789999999999999999999999999999999999999999999999999988877 99999999998654
No 111
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.45 E-value=3.3e-14 Score=142.80 Aligned_cols=124 Identities=19% Similarity=0.070 Sum_probs=87.5
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEecc--Cccccc---ccchhHH-HHHHH---------HHHhh
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSG--SELVQK---FIGEGSR-MVREL---------FVMAS 301 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~--~~l~~~---~~~~~~~-~v~~~---------~~~a~ 301 (378)
++.+.+|+.++|.||||||||||+|+|+|.+.+. .|.+.. .-+.+. ....+.. .+... .....
T Consensus 306 ~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~ 385 (538)
T 1yqt_A 306 PGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTEL 385 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHH
Confidence 3456789999999999999999999999998764 232211 001111 0111111 11110 00112
Q ss_pred hhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 302 LKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
+..+.+.......+..||+|++|++.++++ ..|.||+||| ||+++|+..+..+.++|.++.
T Consensus 386 l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDE----------Pt~~LD~~~~~~i~~~l~~l~ 448 (538)
T 1yqt_A 386 LKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDE----------PSAYLDVEQRLAVSRAIRHLM 448 (538)
T ss_dssp TTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH
Confidence 344445556677888999999999999998 8999999999 999999999999999999873
No 112
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.42 E-value=3.7e-13 Score=136.55 Aligned_cols=116 Identities=22% Similarity=0.196 Sum_probs=83.6
Q ss_pred CCCcceeEeCCCCCchHHHHHHHhhhcCceE--------EEeccCcccccccchhHHHHHHHH-------------HHhh
Q psy6098 243 AQPKGVLLYGPPGTGKTLLARAVAHHTECTF--------IRVSGSELVQKFIGEGSRMVRELF-------------VMAS 301 (378)
Q Consensus 243 ~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~--------i~~~~~~l~~~~~~~~~~~v~~~~-------------~~a~ 301 (378)
..|+.++|.||||+|||||+|+|+|++.++. +.+...++...+.. .+.+.+ ....
T Consensus 376 ~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~----tv~e~~~~~~~~~~~~~~~~~~~ 451 (608)
T 3j16_B 376 SDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPG----TVRQLFFKKIRGQFLNPQFQTDV 451 (608)
T ss_dssp CTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCS----BHHHHHHHHCSSTTTSHHHHHHT
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCc----cHHHHHHHHhhcccccHHHHHHH
Confidence 3447899999999999999999999987641 11111111100000 111111 1122
Q ss_pred hhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 302 LKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
++.+.+.......+..||+|++||+.+|++ ..|.||+||| ||+++|+..+..+.++|.++.
T Consensus 452 l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDE----------PT~gLD~~~~~~i~~ll~~l~ 514 (608)
T 3j16_B 452 VKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDE----------PSAYLDSEQRIICSKVIRRFI 514 (608)
T ss_dssp HHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECC----------TTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHH
Confidence 444555667778888999999999999998 8999999999 999999999999999998873
No 113
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.40 E-value=3.4e-14 Score=130.16 Aligned_cols=72 Identities=36% Similarity=0.490 Sum_probs=67.0
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhcc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSS 79 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~ 79 (378)
++.||||||||++|+++|++++.+|+.++++++.+.|.|++++.++.+|+.|+...|+ ||||||+|.+...+
T Consensus 48 ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---vl~iDEid~l~~~~ 119 (268)
T 2r62_A 48 LLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPS---IIFIDEIDAIGKSR 119 (268)
T ss_dssp CCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSC---EEEESCGGGTTC--
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCe---EEEEeChhhhcccc
Confidence 6789999999999999999999999999999999999999999999999999988888 99999999998653
No 114
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.38 E-value=2.2e-13 Score=135.07 Aligned_cols=73 Identities=36% Similarity=0.458 Sum_probs=68.7
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSE 80 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~ 80 (378)
+++||||||||++||++|.+++..|+.++++++.+.|+|+++++++.+|+.|+..+|| ++||||+|.+...+.
T Consensus 68 LL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~---il~IDEId~l~~~r~ 140 (499)
T 2dhr_A 68 LLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC---IVFIDEIDAVGRKRG 140 (499)
T ss_dssp EEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSC---EEEEECGGGTCCCSS
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCC---EEEEehHHHHHHhhc
Confidence 6899999999999999999999999999999999999999999999999999877888 999999999987654
No 115
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.37 E-value=1.2e-12 Score=125.95 Aligned_cols=133 Identities=24% Similarity=0.384 Sum_probs=75.0
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhh-----------------hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEE
Q psy6098 212 MVGGLDNQIKEIKEVIELPVKHPELFD-----------------ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 274 (378)
Q Consensus 212 ~i~g~~~~~~~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i 274 (378)
.++|++++++.|..++..++....... .-...++..++|+||||||||++++++|..++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 588999999999988753322221100 011234557999999999999999999999999999
Q ss_pred EeccCccc-ccccchh-HHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCC
Q psy6098 275 RVSGSELV-QKFIGEG-SRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIES 352 (378)
Q Consensus 275 ~~~~~~l~-~~~~~~~-~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~ 352 (378)
.++...+. ..|.|.. ...+...+..+. ..+....++||||||||.+...|.++
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------------------~~~~~~~~~vl~iDEi~~l~~~~~~~ 156 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASD-------------------------WNVQKAQKGIVFIDEIDKISRLSENR 156 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTT-------------------------TCHHHHTTSEEEEETGGGC-------
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhcc-------------------------chhhhcCCeEEEEcCHHHHhhhcCCC
Confidence 99887765 3444443 223334433220 00012468899999999999887665
Q ss_pred CCCCChH---HHHHHHHHHH
Q psy6098 353 GSGGDSE---VQRTMLELLN 369 (378)
Q Consensus 353 ~~~~d~~---~~~~~~~lL~ 369 (378)
..+.|.. .+..++++|.
T Consensus 157 ~~~~~~~~~~~~~~Ll~~le 176 (376)
T 1um8_A 157 SITRDVSGEGVQQALLKIVE 176 (376)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred ceecccchHHHHHHHHHHhh
Confidence 5555554 3444445444
No 116
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.35 E-value=2.9e-13 Score=131.67 Aligned_cols=125 Identities=22% Similarity=0.366 Sum_probs=80.3
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhhhcCCC-CCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccc-cccch-
Q psy6098 212 MVGGLDNQIKEIKEVIELPVKHPELFDALGIA-QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIGE- 288 (378)
Q Consensus 212 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~-~~~~~- 288 (378)
+|+|++++|+.+..++..++.++..+..+... ++.+++|+||||||||++++++|+.++.+++.++++.+.+ .|+|+
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 68999999999999988776665555444432 4568999999999999999999999999999999998887 59995
Q ss_pred hHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHH
Q psy6098 289 GSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELL 368 (378)
Q Consensus 289 ~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL 368 (378)
.+..++++|..+. . ++++||+|++... +. .....+.+.++|
T Consensus 96 ~e~~lr~lf~~a~-----------------------------~----~~~~De~d~~~~~---~~---~~~e~rvl~~LL 136 (444)
T 1g41_A 96 VDSIIRDLTDSAM-----------------------------K----LVRQQEIAKNRAR---AE---DVAEERILDALL 136 (444)
T ss_dssp THHHHHHHHHHHH-----------------------------H----HHHHHHHHSCC----------------------
T ss_pred HHHHHHHHHHHHH-----------------------------h----cchhhhhhhhhcc---ch---hhHHHHHHHHHH
Confidence 7888888888772 1 2347888776433 22 223457788888
Q ss_pred HhccCCC
Q psy6098 369 NQLDGFE 375 (378)
Q Consensus 369 ~~l~~~~ 375 (378)
..||++.
T Consensus 137 ~~~dg~~ 143 (444)
T 1g41_A 137 PPAKNQW 143 (444)
T ss_dssp -------
T ss_pred HHhhccc
Confidence 8888873
No 117
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.33 E-value=1.5e-12 Score=142.96 Aligned_cols=125 Identities=17% Similarity=0.198 Sum_probs=91.2
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccc-------------------
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIG------------------- 287 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~------------------- 287 (378)
++.+.+|+.++|+||||+|||||+++|+|.+.+. .|.++|.++... |+.
T Consensus 1053 sl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~ 1132 (1284)
T 3g5u_A 1053 SLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDN 1132 (1284)
T ss_dssp CEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCS
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCC
Confidence 4668899999999999999999999999999886 888988766211 111
Q ss_pred ---hhHHHHHHHHHHhhhhhhhhcc------CchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCC
Q psy6098 288 ---EGSRMVRELFVMASLKKLAFAH------HPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGG 356 (378)
Q Consensus 288 ---~~~~~v~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~ 356 (378)
.+...+.+..+.+.+..+.... ........||+|++||+++||+ .+|+||+||| ||+++
T Consensus 1133 ~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDE----------pTs~l 1202 (1284)
T 3g5u_A 1133 SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDE----------ATSAL 1202 (1284)
T ss_dssp SCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEES----------CSSSC
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeC----------CcccC
Confidence 1122233333333322221111 1111234799999999999999 8999999999 99999
Q ss_pred ChHHHHHHHHHHHhccC
Q psy6098 357 DSEVQRTMLELLNQLDG 373 (378)
Q Consensus 357 d~~~~~~~~~lL~~l~~ 373 (378)
|+.....+.+.|++...
T Consensus 1203 D~~~~~~i~~~l~~~~~ 1219 (1284)
T 3g5u_A 1203 DTESEKVVQEALDKARE 1219 (1284)
T ss_dssp CHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 99999999999987643
No 118
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.32 E-value=6.2e-13 Score=137.38 Aligned_cols=57 Identities=11% Similarity=0.023 Sum_probs=49.9
Q ss_pred chhhhhHhhhhhhhhhccccc--CCCe--EEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 311 PLLFWSLLTILTNTIVCNFRE--HAPS--IIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~--~~p~--vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
....+..||+|++||+++|++ ..|. |||||| |++++|+..+..+.++|+++...+.|
T Consensus 196 ~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDE----------PtsgLD~~~~~~l~~~l~~l~~~g~t 256 (670)
T 3ux8_A 196 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDE----------PSIGLHQRDNDRLIATLKSMRDLGNT 256 (670)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEEC----------TTTTCCGGGHHHHHHHHHHHHHTTCE
T ss_pred hcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEEC----------CccCCCHHHHHHHHHHHHHHHHcCCE
Confidence 456788999999999999999 6776 999999 99999999999999999998655543
No 119
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.32 E-value=2.4e-13 Score=116.26 Aligned_cols=125 Identities=13% Similarity=0.089 Sum_probs=70.7
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEecc--Ccccc-cccchhHHHHHHHHHHhhhhhhhh-ccCchhh
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG--SELVQ-KFIGEGSRMVRELFVMASLKKLAF-AHHPLLF 314 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~--~~l~~-~~~~~~~~~v~~~~~~a~~~~~~~-~~~~~~~ 314 (378)
+|.+.+|+.++|+||||||||||++++.+-. ..+..+. .-+.+ .+.......+.+.........+.. .......
T Consensus 3 sl~i~~gei~~l~G~nGsGKSTl~~~~~~~~--~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 80 (171)
T 4gp7_A 3 KLTIPELSLVVLIGSSGSGKSTFAKKHFKPT--EVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDA 80 (171)
T ss_dssp EEEEESSEEEEEECCTTSCHHHHHHHHSCGG--GEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEES
T ss_pred cccCCCCEEEEEECCCCCCHHHHHHHHccCC--eEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEEC
Confidence 5678899999999999999999999643211 1111000 00000 000001111111111111111110 0001111
Q ss_pred hhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH----------------HHHHHHHHHHhccCCC
Q psy6098 315 WSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE----------------VQRTMLELLNQLDGFE 375 (378)
Q Consensus 315 ~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~----------------~~~~~~~lL~~l~~~~ 375 (378)
....+.+++|++.++++ ..|.+|+||| |++++|+. ....+.++|.++...|
T Consensus 81 ~~~~s~g~~qrv~iAral~~~p~~lllDE----------Pt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g 149 (171)
T 4gp7_A 81 TNVQESARKPLIEMAKDYHCFPVAVVFNL----------PEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREG 149 (171)
T ss_dssp CCCSHHHHHHHHHHHHHTTCEEEEEEECC----------CHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEEEeC----------CHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcC
Confidence 22348899999999998 8999999999 99999998 5577788877664334
No 120
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.30 E-value=1.2e-12 Score=125.28 Aligned_cols=74 Identities=22% Similarity=0.339 Sum_probs=63.2
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEecccccccc-ccchh-HHHHHHHHHHH----HhcCCCCCceEEEeehhhhhhc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQK-FIGEG-SRMVRELFVMA----RCKGSSRGTEFFTMDVDEAIKS 78 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~-~~Ges-e~~~~~~f~~a----~~~~~~~~~ilf~DEid~~~~~ 78 (378)
++.||||||||++||++|..++.+|+.++++++... |+|++ +..++.+|..+ ....++ ||||||+|.+...
T Consensus 55 ll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---vl~lDEid~l~~~ 131 (363)
T 3hws_A 55 LLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRG---IVYIDQIDKISRK 131 (363)
T ss_dssp EEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHC---EEEEECHHHHCCC
T ss_pred EEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCc---EEEEeChhhhccc
Confidence 578999999999999999999999999999999854 99987 67788998876 333344 9999999999877
Q ss_pred cCC
Q psy6098 79 SEG 81 (378)
Q Consensus 79 ~~g 81 (378)
+++
T Consensus 132 ~~~ 134 (363)
T 3hws_A 132 SDN 134 (363)
T ss_dssp SSC
T ss_pred ccc
Confidence 544
No 121
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.30 E-value=1.8e-12 Score=142.82 Aligned_cols=124 Identities=19% Similarity=0.248 Sum_probs=94.5
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------cc--------------------
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FI-------------------- 286 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~-------------------- 286 (378)
++.+++|+.++|+||+|||||||+++|.+++.+. .|.++|.++.+- ++
T Consensus 1099 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld 1178 (1321)
T 4f4c_A 1099 SFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLD 1178 (1321)
T ss_dssp EEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSC
T ss_pred eEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCC
Confidence 4568899999999999999999999999999886 899999776210 00
Q ss_pred --chhHHHHHHHHHHhhhhhhhhccC--chhhh----hHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCC
Q psy6098 287 --GEGSRMVRELFVMASLKKLAFAHH--PLLFW----SLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGG 356 (378)
Q Consensus 287 --~~~~~~v~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~ 356 (378)
..+...+.++.+.+.+..+....+ ....+ ..+|+|++|++|+||+ .+|+||+||| ||+++
T Consensus 1179 ~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDE----------aTSaL 1248 (1321)
T 4f4c_A 1179 PSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDE----------ATSAL 1248 (1321)
T ss_dssp TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEES----------CCCST
T ss_pred CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeC----------ccccC
Confidence 113345666666665554432211 11122 3699999999999999 8999999999 99999
Q ss_pred ChHHHHHHHHHHHhcc
Q psy6098 357 DSEVQRTMLELLNQLD 372 (378)
Q Consensus 357 d~~~~~~~~~lL~~l~ 372 (378)
|+++...+.+.|+++-
T Consensus 1249 D~~tE~~Iq~~l~~~~ 1264 (1321)
T 4f4c_A 1249 DTESEKVVQEALDRAR 1264 (1321)
T ss_dssp TSHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHHHHc
Confidence 9999999998887653
No 122
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.29 E-value=5.7e-12 Score=117.36 Aligned_cols=115 Identities=25% Similarity=0.419 Sum_probs=78.7
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhhhcC-CCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccc-cccchh
Q psy6098 212 MVGGLDNQIKEIKEVIELPVKHPELFDALG-IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-KFIGEG 289 (378)
Q Consensus 212 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~-~~~~~~ 289 (378)
+++|++++++.+...+..++........+. -..+..++|+||||||||+++++++..++.+++.+++.++.. .|++..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 689999999999988765433222111110 124568999999999999999999999999999999888765 455543
Q ss_pred -HHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCC
Q psy6098 290 -SRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 290 -~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~ 350 (378)
...+.+++..+.- ...+...++||||||||.+.+.+.
T Consensus 96 ~~~~~~~~~~~~~~------------------------~~~~~~~~~vl~iDEi~~l~~~~~ 133 (310)
T 1ofh_A 96 VDSIIRDLTDSAGG------------------------AIDAVEQNGIVFIDEIDKICKKGE 133 (310)
T ss_dssp TTHHHHHHHHTTTT------------------------CHHHHHHHCEEEEECGGGGSCCSS
T ss_pred HHHHHHHHHHHhhH------------------------HHhhccCCCEEEEEChhhcCcccc
Confidence 2344444442200 000113578999999999988763
No 123
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.29 E-value=2.4e-12 Score=141.47 Aligned_cols=125 Identities=17% Similarity=0.198 Sum_probs=89.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------ccchh----HHHHHHHH----
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FIGEG----SRMVRELF---- 297 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~~~~----~~~v~~~~---- 297 (378)
-++.+++|+.++|+||||||||||+++|+|.+.+. .|.++|.++... |+.+. ..++++++
T Consensus 409 isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~ 488 (1284)
T 3g5u_A 409 LNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGR 488 (1284)
T ss_dssp EEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHC
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCC
Confidence 35678899999999999999999999999999886 889988765211 11110 01233332
Q ss_pred ------------HHhhhhhhh------hccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 298 ------------VMASLKKLA------FAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 298 ------------~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
..+...... ...........||+|++||+++||+ .+|+||+||| |++++|
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDE----------pts~LD 558 (1284)
T 3g5u_A 489 EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDE----------ATSALD 558 (1284)
T ss_dssp SSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEES----------TTCSSC
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEEC----------CCCCCC
Confidence 222221111 1111122334799999999999999 8999999999 999999
Q ss_pred hHHHHHHHHHHHhcc
Q psy6098 358 SEVQRTMLELLNQLD 372 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~ 372 (378)
++..+.+.+.|..+.
T Consensus 559 ~~~~~~i~~~l~~~~ 573 (1284)
T 3g5u_A 559 TESEAVVQAALDKAR 573 (1284)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999998887664
No 124
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.27 E-value=2.6e-12 Score=119.93 Aligned_cols=69 Identities=19% Similarity=0.204 Sum_probs=62.2
Q ss_pred CCCCCCCChhHHHHHHHhhccC-------ceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTE-------CTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIK 77 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~-------~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~ 77 (378)
++.||||||||++|+++|+.++ .+|+.++++++.+.|.|+++..++.+|+.|. + +||||||+|.++.
T Consensus 71 ll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~---~---~vl~iDEid~l~~ 144 (309)
T 3syl_A 71 SFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM---G---GVLFIDEAYYLYR 144 (309)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHHT---T---SEEEEETGGGSCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhcC---C---CEEEEEChhhhcc
Confidence 6889999999999999999984 3899999999999999999999999998883 3 4999999999986
Q ss_pred cc
Q psy6098 78 SS 79 (378)
Q Consensus 78 ~~ 79 (378)
..
T Consensus 145 ~~ 146 (309)
T 3syl_A 145 PD 146 (309)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 125
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.27 E-value=1.1e-11 Score=106.41 Aligned_cols=105 Identities=21% Similarity=0.383 Sum_probs=73.5
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhc----------CceE
Q psy6098 204 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECTF 273 (378)
Q Consensus 204 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~----------~~~~ 273 (378)
.+++..|+++.|.++.++++.+.+.. ..+..++|+||+|+|||++++.++..+ +..+
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T 1jbk_A 15 RAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81 (195)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred HHhhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcE
Confidence 34566788999999999888776432 234579999999999999999999886 4556
Q ss_pred EEeccCccc--ccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCC
Q psy6098 274 IRVSGSELV--QKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSR 349 (378)
Q Consensus 274 i~~~~~~l~--~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r 349 (378)
+.++...+. ..+.+.....+.+.+.... +...|.||||||+|.+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~vl~iDe~~~l~~~~ 131 (195)
T 1jbk_A 82 LALDMGALVAGAKYRGEFEERLKGVLNDLA----------------------------KQEGNVILFIDELHTMVGAG 131 (195)
T ss_dssp EEECHHHHHTTTCSHHHHHHHHHHHHHHHH----------------------------HSTTTEEEEEETGGGGTT--
T ss_pred EEeeHHHHhccCCccccHHHHHHHHHHHHh----------------------------hcCCCeEEEEeCHHHHhccC
Confidence 777665553 2334444444555554331 23568899999999998765
No 126
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.27 E-value=3.2e-12 Score=116.11 Aligned_cols=72 Identities=36% Similarity=0.468 Sum_probs=66.0
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhcc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSS 79 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~ 79 (378)
+++||||||||++++++|..++..++.++++++.+.+.|+.+++++.+|+.++...|+ ++|+||+|.+...+
T Consensus 53 ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---i~~~Deid~l~~~~ 124 (254)
T 1ixz_A 53 LLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC---IVFIDEIDAVGRKR 124 (254)
T ss_dssp EEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE---EEEEETHHHHHC--
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe---EEEehhhhhhhccc
Confidence 6889999999999999999999999999999999999999999999999999877777 99999999997654
No 127
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.25 E-value=5.1e-12 Score=108.59 Aligned_cols=122 Identities=13% Similarity=0.113 Sum_probs=70.9
Q ss_pred CCCCCcccccCc-HHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc----eEEEeccC
Q psy6098 205 VPDSTYEMVGGL-DNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC----TFIRVSGS 279 (378)
Q Consensus 205 ~~~~~~~~i~g~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~----~~i~~~~~ 279 (378)
+.+.+|++..+. +...+.+.....+ ..++.+.++++++|+||||||||||++++++.+.+ ..+.++..
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVF-------VHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHH-------HHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred hhhCccccccCCCHHHHHHHHHHHHH-------HHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 455677777653 2233332222222 35667777899999999999999999999998742 23333332
Q ss_pred cccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 280 ELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 280 ~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
++... +...+...... .. ...-..|++|||||+++ .++|+.
T Consensus 77 ~~~~~--------~~~~~~~~~~~--------------------~~--~~~~~~~~llilDE~~~---------~~~~~~ 117 (180)
T 3ec2_A 77 DLIFR--------LKHLMDEGKDT--------------------KF--LKTVLNSPVLVLDDLGS---------ERLSDW 117 (180)
T ss_dssp HHHHH--------HHHHHHHTCCS--------------------HH--HHHHHTCSEEEEETCSS---------SCCCHH
T ss_pred HHHHH--------HHHHhcCchHH--------------------HH--HHHhcCCCEEEEeCCCC---------CcCCHH
Confidence 22111 11111110000 00 00113789999999432 368888
Q ss_pred HHHHHHHHHHhcc
Q psy6098 360 VQRTMLELLNQLD 372 (378)
Q Consensus 360 ~~~~~~~lL~~l~ 372 (378)
.+..+.+++....
T Consensus 118 ~~~~l~~ll~~~~ 130 (180)
T 3ec2_A 118 QRELISYIITYRY 130 (180)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887764
No 128
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.24 E-value=5.1e-12 Score=139.17 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=93.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------cc-------------------
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------FI------------------- 286 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------~~------------------- 286 (378)
-++.+++|+.++|+||+|||||||+++|.|++.+. .|.++|.++.+- |+
T Consensus 437 isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~ 516 (1321)
T 4f4c_A 437 MNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGK 516 (1321)
T ss_dssp EEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTC
T ss_pred eEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhc
Confidence 35778999999999999999999999999999987 899988655210 11
Q ss_pred -chhHHHHHHHHHHhhhhhhhhc--cCchh----hhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCC
Q psy6098 287 -GEGSRMVRELFVMASLKKLAFA--HHPLL----FWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGD 357 (378)
Q Consensus 287 -~~~~~~v~~~~~~a~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d 357 (378)
..+...+.++.+.+.+..+... .-... .=..||+|++||+++||+ .+|+|++||| |++++|
T Consensus 517 ~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE----------~tSaLD 586 (1321)
T 4f4c_A 517 EGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDE----------ATSALD 586 (1321)
T ss_dssp TTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEES----------TTTTSC
T ss_pred ccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEec----------ccccCC
Confidence 1233455556655544333211 11111 223699999999999999 8999999999 999999
Q ss_pred hHHHHHHHHHHHhcc
Q psy6098 358 SEVQRTMLELLNQLD 372 (378)
Q Consensus 358 ~~~~~~~~~lL~~l~ 372 (378)
+++.+.+.+.|.++-
T Consensus 587 ~~te~~i~~~l~~~~ 601 (1321)
T 4f4c_A 587 AESEGIVQQALDKAA 601 (1321)
T ss_dssp TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999888888887654
No 129
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.23 E-value=4.9e-11 Score=109.40 Aligned_cols=107 Identities=20% Similarity=0.232 Sum_probs=70.8
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCccc-ccccchhH
Q psy6098 212 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV-QKFIGEGS 290 (378)
Q Consensus 212 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~-~~~~~~~~ 290 (378)
.+.|.....+++....... .......+..++..++|+||||||||+++++++..++.+++.++.++.. ....+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~ 110 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKC 110 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHH
T ss_pred CCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHH
Confidence 4567666665555421110 1112333456667899999999999999999999999898888765422 11112222
Q ss_pred HHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCC
Q psy6098 291 RMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 291 ~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~ 350 (378)
..+++.|..+ ....+++|||||||.++..+.
T Consensus 111 ~~~~~~~~~~-----------------------------~~~~~~vl~iDEid~l~~~~~ 141 (272)
T 1d2n_A 111 QAMKKIFDDA-----------------------------YKSQLSCVVVDDIERLLDYVP 141 (272)
T ss_dssp HHHHHHHHHH-----------------------------HTSSEEEEEECCHHHHTTCBT
T ss_pred HHHHHHHHHH-----------------------------HhcCCcEEEEEChhhhhccCC
Confidence 4556666655 345789999999999987763
No 130
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.23 E-value=8.4e-11 Score=111.14 Aligned_cols=114 Identities=18% Similarity=0.285 Sum_probs=80.0
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCc
Q psy6098 201 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 280 (378)
Q Consensus 201 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~ 280 (378)
+.+.+.+.+|++++|.+.+++.+.+.+..... .-.+...++|+||||||||+++++++..++.+++.+++..
T Consensus 19 ~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~ 90 (338)
T 3pfi_A 19 YETSLRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM 90 (338)
T ss_dssp ----CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred hhhccCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence 44567778999999999999999988765311 1123457999999999999999999999999999998765
Q ss_pred ccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHH
Q psy6098 281 LVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 281 l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
+.. ...+...+. ....+.+|||||||.+. +..
T Consensus 91 ~~~------~~~~~~~~~-------------------------------~~~~~~vl~lDEi~~l~-----------~~~ 122 (338)
T 3pfi_A 91 IEK------SGDLAAILT-------------------------------NLSEGDILFIDEIHRLS-----------PAI 122 (338)
T ss_dssp CCS------HHHHHHHHH-------------------------------TCCTTCEEEEETGGGCC-----------HHH
T ss_pred ccc------hhHHHHHHH-------------------------------hccCCCEEEEechhhcC-----------HHH
Confidence 521 122222221 12478999999999753 455
Q ss_pred HHHHHHHHHh
Q psy6098 361 QRTMLELLNQ 370 (378)
Q Consensus 361 ~~~~~~lL~~ 370 (378)
+..+...|.+
T Consensus 123 ~~~Ll~~l~~ 132 (338)
T 3pfi_A 123 EEVLYPAMED 132 (338)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5666666654
No 131
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.23 E-value=7.5e-12 Score=114.85 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=58.5
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEecccc-ccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSE-LVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSE 80 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~-~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~ 80 (378)
++.||||||||++|+++|.+++.+|+.+++++ +.+...+.....++.+|+.|....++ +|||||+|.++..+.
T Consensus 68 Ll~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---vl~iDEid~l~~~~~ 141 (272)
T 1d2n_A 68 LLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLS---CVVVDDIERLLDYVP 141 (272)
T ss_dssp EEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEE---EEEECCHHHHTTCBT
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCc---EEEEEChhhhhccCC
Confidence 56799999999999999999999999998875 33333334447889999999865554 999999999986543
No 132
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.22 E-value=2.7e-11 Score=103.64 Aligned_cols=105 Identities=19% Similarity=0.364 Sum_probs=72.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhc----------CceEE
Q psy6098 205 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECTFI 274 (378)
Q Consensus 205 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~----------~~~~i 274 (378)
+.+..++++.|.++..+.+.+.+.. ..+..++|+||+|+|||++++.++..+ +..++
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred HhccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 4456788999999998888776532 234578999999999999999999886 44566
Q ss_pred EeccCcccc--cccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCC
Q psy6098 275 RVSGSELVQ--KFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRI 350 (378)
Q Consensus 275 ~~~~~~l~~--~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~ 350 (378)
.++...+.. .+.+.....+.+.+.... ....|.||||||+|.+.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~vl~iDe~~~l~~~~~ 132 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQ----------------------------DAEGQVVMFIDEIHTVVGAGA 132 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHH----------------------------HTTTSEEEEETTGGGGSSSSS
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHH----------------------------hcCCceEEEEeCHHHhccccc
Confidence 665544431 233333334444444331 124788999999999987653
No 133
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.21 E-value=1.6e-11 Score=129.62 Aligned_cols=116 Identities=19% Similarity=0.254 Sum_probs=79.7
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhh-hcC-c------eEEEeccCcccccccchh------------HHHHHHHHH
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAH-HTE-C------TFIRVSGSELVQKFIGEG------------SRMVRELFV 298 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~-~~~-~------~~i~~~~~~l~~~~~~~~------------~~~v~~~~~ 298 (378)
+|.+.+|+.++|+||||+|||||+|+|++ ... . ..+.+. .+....+...+ ...+.++
T Consensus 455 sl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~-q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~-- 531 (986)
T 2iw3_A 455 QLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVE-HDIDGTHSDTSVLDFVFESGVGTKEAIKDK-- 531 (986)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETT-CCCCCCCTTSBHHHHHHTTCSSCHHHHHHH--
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEc-ccccccccCCcHHHHHHHhhcCHHHHHHHH--
Confidence 45677899999999999999999999994 211 0 111111 11000000000 1112222
Q ss_pred Hhhhhhhhh-ccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHh
Q psy6098 299 MASLKKLAF-AHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ 370 (378)
Q Consensus 299 ~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~ 370 (378)
+..+++ .......+..||+|++|++.++++ ..|.|||||| |++++|+..+..+.++|.+
T Consensus 532 ---L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDE----------PTs~LD~~~~~~l~~~L~~ 593 (986)
T 2iw3_A 532 ---LIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDE----------PTNHLDTVNVAWLVNYLNT 593 (986)
T ss_dssp ---HHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEES----------TTTTCCHHHHHHHHHHHHH
T ss_pred ---HHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEC----------CccCCCHHHHHHHHHHHHh
Confidence 233333 233456678999999999999998 9999999999 9999999999999999987
No 134
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.21 E-value=4.7e-11 Score=133.30 Aligned_cols=71 Identities=17% Similarity=0.064 Sum_probs=50.0
Q ss_pred CCCCCCCChhHHHHHHHhhcc---CceEEEecccccccccc----c------------hhHHHHHHHHHHHHhcCCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT---ECTFIRVSGSELVQKFI----G------------EGSRMVRELFVMARCKGSSRGT 65 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~---~~~~~~v~~~~~~~~~~----G------------ese~~~~~~f~~a~~~~~~~~~ 65 (378)
++.||||||||++|.+++.+. |.+.+.++..+.....+ | .+|...+-+...++..+|+
T Consensus 1085 ll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~~~~d--- 1161 (2050)
T 3cmu_A 1085 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD--- 1161 (2050)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS---
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHhCCCC---
Confidence 578999999999999988653 56677777776543322 1 2334445555556666687
Q ss_pred eEEEeehhhhhhc
Q psy6098 66 EFFTMDVDEAIKS 78 (378)
Q Consensus 66 ilf~DEid~~~~~ 78 (378)
+++||++..+.+.
T Consensus 1162 lvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1162 VIVVDSVAALTPK 1174 (2050)
T ss_dssp EEEESCGGGCCCH
T ss_pred EEEECCccccccc
Confidence 9999999999653
No 135
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.21 E-value=8.5e-12 Score=131.63 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=45.5
Q ss_pred hhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhc
Q psy6098 312 LLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 371 (378)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l 371 (378)
...+..||+|++|++.++++ ..|.||+||| |++++|+.....+.++|+++
T Consensus 896 ~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDE----------PT~gLD~~s~~~L~~~L~~~ 947 (986)
T 2iw3_A 896 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDE----------PTNYLDRDSLGALSKALKEF 947 (986)
T ss_dssp HSCGGGCCHHHHHHHHHHHHHTTCCSEEEEEC----------GGGTCCHHHHHHHHHHHHSC
T ss_pred CCCccccCHHHHHHHHHHHHHHhCCCEEEEEC----------CccCCCHHHHHHHHHHHHHh
Confidence 34577999999999999998 8999999999 99999999999999988876
No 136
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.20 E-value=6.4e-12 Score=115.76 Aligned_cols=72 Identities=36% Similarity=0.468 Sum_probs=66.6
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhcc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSS 79 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~ 79 (378)
+++||||||||++++++|..++..++.++++++.+.+.|+.+++++.+|+.++...|+ ++|+||+|.+...+
T Consensus 77 ll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---i~~iDeid~l~~~~ 148 (278)
T 1iy2_A 77 LLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC---IVFIDEIDAVGRKR 148 (278)
T ss_dssp EEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE---EEEEETHHHHHCC-
T ss_pred EEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc---EEehhhhHhhhccc
Confidence 6889999999999999999999999999999999999999999999999999877777 99999999987653
No 137
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.19 E-value=1.6e-11 Score=123.04 Aligned_cols=86 Identities=23% Similarity=0.337 Sum_probs=66.2
Q ss_pred hhccccCCCCCcccccCcHHHHHHHHHHHhcccc-CchhhhhcCCC---CCcceeEeCCCCCchHHHHHHHhhhcCceEE
Q psy6098 199 LMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVK-HPELFDALGIA---QPKGVLLYGPPGTGKTLLARAVAHHTECTFI 274 (378)
Q Consensus 199 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~-~~~~~~~~~~~---~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i 274 (378)
..+.+.+++.+|++++|++++++++.+++..... .+..++..+.. ++..++|+||||||||++++++|..++..++
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 3466778889999999999999999988764221 11222333332 4568999999999999999999999999999
Q ss_pred EeccCccccc
Q psy6098 275 RVSGSELVQK 284 (378)
Q Consensus 275 ~~~~~~l~~~ 284 (378)
.++++++...
T Consensus 107 ~in~s~~~~~ 116 (516)
T 1sxj_A 107 EQNASDVRSK 116 (516)
T ss_dssp EECTTSCCCH
T ss_pred EEeCCCcchH
Confidence 9998876543
No 138
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.18 E-value=8.2e-11 Score=112.44 Aligned_cols=82 Identities=24% Similarity=0.317 Sum_probs=61.9
Q ss_pred CCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc--eEEEeccCcccccc
Q psy6098 208 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC--TFIRVSGSELVQKF 285 (378)
Q Consensus 208 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~--~~i~~~~~~l~~~~ 285 (378)
.+|++++|++++++.+...... ..-+..++..++|+||||||||+++++++..++. +++.+++..+...+
T Consensus 41 ~~~~~ivG~~~~~~~l~~l~~~--------~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 41 QASQGMVGQLAARRAAGVVLEM--------IREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE 112 (368)
T ss_dssp SEETTEESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred cchhhccChHHHHHHHHHHHHH--------HHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence 3499999999999887665543 1124445678999999999999999999999885 58888888887777
Q ss_pred cchhHHHHHHHHH
Q psy6098 286 IGEGSRMVRELFV 298 (378)
Q Consensus 286 ~~~~~~~v~~~~~ 298 (378)
.+..+. +.+.|.
T Consensus 113 ~~~~~~-~~~~~~ 124 (368)
T 3uk6_A 113 MSKTEA-LTQAFR 124 (368)
T ss_dssp SCHHHH-HHHHHH
T ss_pred cchhHH-HHHHHH
Confidence 666553 444443
No 139
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.17 E-value=1.2e-11 Score=106.38 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=69.9
Q ss_pred ceeEeCCCCCchHHHHHHHhhhcCceEEEeccCccc----cc---ccchhHHHHHHHHHHhhhhhhhhc--cCchhhhhH
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELV----QK---FIGEGSRMVRELFVMASLKKLAFA--HHPLLFWSL 317 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~----~~---~~~~~~~~v~~~~~~a~~~~~~~~--~~~~~~~~~ 317 (378)
.++|+||||||||||+++|+|.++..+.-....+.. .. ++.+.. ...+. .+..+... ......+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~ 76 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT-EGKKK----IFSSKFFTSKKLVGSYGVN 76 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET-TCCEE----EEEETTCCCSSEETTEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC-cHHHH----HHHhhcCCccccccccccC
Confidence 578999999999999999999986332111111110 00 000000 00000 00000110 123345567
Q ss_pred hhhhhhhhhcccc-------cCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHh
Q psy6098 318 LTILTNTIVCNFR-------EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ 370 (378)
Q Consensus 318 ~~~~~~~~~~~~~-------~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~ 370 (378)
+|+|++|++++++ ...|++|+|||++ |++++|+.....+.++|.+
T Consensus 77 lSgG~~qr~~la~aa~~~~l~~~p~llilDEig--------p~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 77 VQYFEELAIPILERAYREAKKDRRKVIIIDEIG--------KMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCS--------TTGGGCHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHhhccccccccCCCEEEEeCCC--------CcccCCHHHHHHHHHHHhc
Confidence 9999999999887 3789999999976 7899999999989888865
No 140
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.17 E-value=2.2e-11 Score=125.78 Aligned_cols=57 Identities=18% Similarity=0.052 Sum_probs=48.9
Q ss_pred chhhhhHhhhhhhhhhccccc--CC---CeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 311 PLLFWSLLTILTNTIVCNFRE--HA---PSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~--~~---p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
....+..||+|++||+++||+ .. |.|||||| |++++|+.....+.++|.++...+.|
T Consensus 537 ~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDE----------Pt~~LD~~~~~~i~~~l~~l~~~g~t 598 (670)
T 3ux8_A 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDE----------PTTGLHVDDIARLLDVLHRLVDNGDT 598 (670)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEES----------TTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred ccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeC----------CCCCCCHHHHHHHHHHHHHHHHCCCE
Confidence 356778999999999999998 33 57999999 99999999999999999988655543
No 141
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.16 E-value=3.7e-11 Score=99.41 Aligned_cols=98 Identities=16% Similarity=0.257 Sum_probs=70.0
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccccccchhHH
Q psy6098 212 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSR 291 (378)
Q Consensus 212 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~~~~~~ 291 (378)
+++|.+..++++.+.+.... ..+..++|+||||||||+++++|+.... +++.+++.++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 57788888888888766421 2345799999999999999999999887 88888887664433
Q ss_pred HHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhc
Q psy6098 292 MVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 371 (378)
Q Consensus 292 ~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l 371 (378)
....+..+ .+.+|||||||.+ ++..+..+.++|.+.
T Consensus 67 -~~~~~~~a--------------------------------~~~~l~lDei~~l-----------~~~~q~~Ll~~l~~~ 102 (143)
T 3co5_A 67 -PMELLQKA--------------------------------EGGVLYVGDIAQY-----------SRNIQTGITFIIGKA 102 (143)
T ss_dssp -HHHHHHHT--------------------------------TTSEEEEEECTTC-----------CHHHHHHHHHHHHHH
T ss_pred -hhhHHHhC--------------------------------CCCeEEEeChHHC-----------CHHHHHHHHHHHHhC
Confidence 23344444 5679999998875 455566677777654
No 142
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.14 E-value=1.3e-10 Score=96.35 Aligned_cols=97 Identities=18% Similarity=0.276 Sum_probs=67.6
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhc---CceEEEeccCcccccccch
Q psy6098 212 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGE 288 (378)
Q Consensus 212 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~---~~~~i~~~~~~l~~~~~~~ 288 (378)
+++|.....+++.+.+... ...+..++|+||||||||+++++|+... +.+++ +++..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 5678888888887776541 1234579999999999999999999886 44588 888776554
Q ss_pred hHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHH
Q psy6098 289 GSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELL 368 (378)
Q Consensus 289 ~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL 368 (378)
......+..+ .+.+|||||||.+ ++..+..+.++|
T Consensus 66 --~~~~~~~~~a--------------------------------~~g~l~ldei~~l-----------~~~~q~~Ll~~l 100 (145)
T 3n70_A 66 --PQLNDFIALA--------------------------------QGGTLVLSHPEHL-----------TREQQYHLVQLQ 100 (145)
T ss_dssp --SCHHHHHHHH--------------------------------TTSCEEEECGGGS-----------CHHHHHHHHHHH
T ss_pred --hhhhcHHHHc--------------------------------CCcEEEEcChHHC-----------CHHHHHHHHHHH
Confidence 1122334444 5679999999975 455566666666
Q ss_pred H
Q psy6098 369 N 369 (378)
Q Consensus 369 ~ 369 (378)
.
T Consensus 101 ~ 101 (145)
T 3n70_A 101 S 101 (145)
T ss_dssp H
T ss_pred h
Confidence 4
No 143
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.13 E-value=2.2e-11 Score=107.32 Aligned_cols=114 Identities=21% Similarity=0.220 Sum_probs=66.8
Q ss_pred CCCcceeEeCCCCCchHHHHHHHhhhcCce--EEE---ecc--Ccccc--cccchhHHHHHHHH-HHh--hhhhhhh--c
Q psy6098 243 AQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIR---VSG--SELVQ--KFIGEGSRMVRELF-VMA--SLKKLAF--A 308 (378)
Q Consensus 243 ~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~---~~~--~~l~~--~~~~~~~~~v~~~~-~~a--~~~~~~~--~ 308 (378)
.+|+.++|.||||||||||+++|+|. .++ .|. +.. ..... .|+.+.. .+.+ ... ....+.. .
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~---~enl~~~~~~~~~~~~~~~~ 95 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL---NEKIDPYLRPLHDALRDMVE 95 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC---------CTTTHHHHHHHTTTSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH---HHHHHHHHHHHHHHHHHhcc
Confidence 56889999999999999999999998 654 221 111 11111 1222221 1111 000 0000000 0
Q ss_pred cC-chhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 309 HH-PLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 309 ~~-~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
.. ....... +.|++|+++++++ ..|+|||||| |+++ .+..+.++|.++ ..+.
T Consensus 96 ~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDE----------Pts~----~~~~l~~~l~~l-~~g~ 150 (208)
T 3b85_A 96 PEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDE----------AQNT----TPAQMKMFLTRL-GFGS 150 (208)
T ss_dssp TTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECS----------GGGC----CHHHHHHHHTTB-CTTC
T ss_pred HHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeC----------Cccc----cHHHHHHHHHHh-cCCC
Confidence 00 0011111 3499999999998 8999999999 9998 567888999888 4343
No 144
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.10 E-value=3.9e-10 Score=105.95 Aligned_cols=119 Identities=24% Similarity=0.277 Sum_probs=82.3
Q ss_pred hccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccC
Q psy6098 200 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 279 (378)
Q Consensus 200 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~ 279 (378)
.+.+.+++.+|++++|++++++.+.+.+.. -..+..++++||||+|||+++++++..++.+++.++++
T Consensus 15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~ 82 (324)
T 3u61_B 15 ILEQKYRPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGS 82 (324)
T ss_dssp SHHHHSCCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETT
T ss_pred hHHHhhCCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccc
Confidence 345667888999999999999999888762 12234678889999999999999999999999999876
Q ss_pred cccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChH
Q psy6098 280 ELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSE 359 (378)
Q Consensus 280 ~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~ 359 (378)
+.. ...+++.+....... -....+.||||||+|.+.. ..
T Consensus 83 ~~~-------~~~i~~~~~~~~~~~------------------------~~~~~~~vliiDEi~~l~~----------~~ 121 (324)
T 3u61_B 83 DCK-------IDFVRGPLTNFASAA------------------------SFDGRQKVIVIDEFDRSGL----------AE 121 (324)
T ss_dssp TCC-------HHHHHTHHHHHHHBC------------------------CCSSCEEEEEEESCCCGGG----------HH
T ss_pred ccC-------HHHHHHHHHHHHhhc------------------------ccCCCCeEEEEECCcccCc----------HH
Confidence 531 233333332210000 0113789999999998641 33
Q ss_pred HHHHHHHHHHhc
Q psy6098 360 VQRTMLELLNQL 371 (378)
Q Consensus 360 ~~~~~~~lL~~l 371 (378)
.+..+..++.+.
T Consensus 122 ~~~~L~~~le~~ 133 (324)
T 3u61_B 122 SQRHLRSFMEAY 133 (324)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 455666666543
No 145
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.09 E-value=1.9e-10 Score=112.89 Aligned_cols=102 Identities=25% Similarity=0.443 Sum_probs=74.1
Q ss_pred ccccCCCCCcccccCcHHHH---HHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEec
Q psy6098 201 MVEKVPDSTYEMVGGLDNQI---KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 277 (378)
Q Consensus 201 ~~~~~~~~~~~~i~g~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~ 277 (378)
..+.+++.++++++|+++++ ..+...+... . ...++|+|||||||||++++|++.++.+++.++
T Consensus 16 la~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~----------~---~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 16 LAARMRPENLAQYIGQQHLLAAGKPLPRAIEAG----------H---LHSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp HHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHT----------C---CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcC----------C---CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 34556778999999999999 6777766541 1 146999999999999999999999999998887
Q ss_pred cCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccC
Q psy6098 278 GSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGS 347 (378)
Q Consensus 278 ~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~ 347 (378)
... .+...+++.+..+.... ....+.||||||||.+..
T Consensus 83 a~~-------~~~~~ir~~~~~a~~~~-------------------------~~~~~~iLfIDEI~~l~~ 120 (447)
T 3pvs_A 83 AVT-------SGVKEIREAIERARQNR-------------------------NAGRRTILFVDEVHRFNK 120 (447)
T ss_dssp TTT-------CCHHHHHHHHHHHHHHH-------------------------HTTCCEEEEEETTTCC--
T ss_pred ecc-------CCHHHHHHHHHHHHHhh-------------------------hcCCCcEEEEeChhhhCH
Confidence 543 23345666665552111 124689999999998754
No 146
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.09 E-value=4.5e-10 Score=105.27 Aligned_cols=70 Identities=27% Similarity=0.412 Sum_probs=56.0
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcc
Q psy6098 204 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 281 (378)
Q Consensus 204 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l 281 (378)
.+.+.+|++++|.+.+++.+.+.+.... .. -..+..++|+||+|||||+++++++..++.+++.+++..+
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~-------~~-~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 74 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAK-------AR-KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI 74 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHH-------HH-CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTC
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHH-------cc-CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 4567789999999999999988876421 10 1234579999999999999999999999888888887655
No 147
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.05 E-value=6.5e-11 Score=110.15 Aligned_cols=73 Identities=25% Similarity=0.374 Sum_probs=59.3
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccc-cccchh-HHHHHHHHHHH-----HhcCCCCCceEEEeehhhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQ-KFIGEG-SRMVRELFVMA-----RCKGSSRGTEFFTMDVDEAIK 77 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~-~~~Ges-e~~~~~~f~~a-----~~~~~~~~~ilf~DEid~~~~ 77 (378)
++.||||||||++|+++|..++.+|+.++++++.+ .|+|.. +..++++|..+ ++..+ +||||||+|.+..
T Consensus 54 ll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~vl~iDEi~~l~~ 130 (310)
T 1ofh_A 54 LMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQN---GIVFIDEIDKICK 130 (310)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHH---CEEEEECGGGGSC
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCC---CEEEEEChhhcCc
Confidence 57899999999999999999999999999999987 788754 46688888644 11123 4999999999987
Q ss_pred ccC
Q psy6098 78 SSE 80 (378)
Q Consensus 78 ~~~ 80 (378)
...
T Consensus 131 ~~~ 133 (310)
T 1ofh_A 131 KGE 133 (310)
T ss_dssp CSS
T ss_pred ccc
Confidence 643
No 148
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.04 E-value=1.5e-10 Score=111.24 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=51.0
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEecccccc-ccccchh-HHHHHHHHHHHHhc-CCCCCceEEEeehhhhhhccC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELV-QKFIGEG-SRMVRELFVMARCK-GSSRGTEFFTMDVDEAIKSSE 80 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~-~~~~Ges-e~~~~~~f~~a~~~-~~~~~~ilf~DEid~~~~~~~ 80 (378)
++.||||||||++|+++|..++.+|+.++++.+. +.|.|+. +..++.+|..+... ..+.++|+||||++.+...+.
T Consensus 76 ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~ 154 (376)
T 1um8_A 76 LLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSE 154 (376)
T ss_dssp EEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-----
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcC
Confidence 5789999999999999999999999999999887 5788876 55577777654210 001245999999999987643
No 149
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.03 E-value=7.7e-10 Score=117.27 Aligned_cols=105 Identities=19% Similarity=0.368 Sum_probs=71.3
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhc----------Cce
Q psy6098 203 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECT 272 (378)
Q Consensus 203 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~----------~~~ 272 (378)
+...+..+++++|.++.+..+.+.+.. ..+.+++|+||||||||++++.+|+.+ +..
T Consensus 162 ~~~r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~ 228 (854)
T 1qvr_A 162 RLAAEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKR 228 (854)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCE
T ss_pred HHHhcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCe
Confidence 345567889999999998888776532 223468999999999999999999987 566
Q ss_pred EEEeccCccc--ccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhccccc-CCCeEEEEecCccccCCC
Q psy6098 273 FIRVSGSELV--QKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE-HAPSIIFMDEIDSIGSSR 349 (378)
Q Consensus 273 ~i~~~~~~l~--~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~vl~lDEid~~~~~r 349 (378)
++.++...+. ..+.|+....+..+|..+ .. ..|.||||||+|.+.+.+
T Consensus 229 ~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~-----------------------------~~~~~~~iL~IDEi~~l~~~~ 279 (854)
T 1qvr_A 229 IVSLQMGSLLAGAKYRGEFEERLKAVIQEV-----------------------------VQSQGEVILFIDELHTVVGAG 279 (854)
T ss_dssp EEEECC-----------CHHHHHHHHHHHH-----------------------------HTTCSSEEEEECCC-------
T ss_pred EEEeehHHhhccCccchHHHHHHHHHHHHH-----------------------------HhcCCCeEEEEecHHHHhccC
Confidence 8888888776 457777788888888766 33 368999999999998765
No 150
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.02 E-value=1.1e-10 Score=113.50 Aligned_cols=45 Identities=16% Similarity=0.053 Sum_probs=42.0
Q ss_pred hhhhhhhhhccccc--CCC--eEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 318 LTILTNTIVCNFRE--HAP--SIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 318 ~~~~~~~~~~~~~~--~~p--~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
+|+|++|++.+++. ..| +||+||| |++++|+.....+.++|.++.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDE----------pt~~LD~~~~~~l~~~L~~l~ 344 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDE----------VDAGIGGAAAIAVAEQLSRLA 344 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESS----------TTTTCCHHHHHHHHHHHHHHT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHh
Confidence 69999999999987 677 9999999 999999999999999999886
No 151
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.02 E-value=2e-10 Score=120.01 Aligned_cols=57 Identities=14% Similarity=-0.038 Sum_probs=49.5
Q ss_pred chhhhhHhhhhhhhhhccccc--C---CCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 311 PLLFWSLLTILTNTIVCNFRE--H---APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~--~---~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
....+..||+|++|++.+++. . .|.|+|||| ||+|+|+.....+.++|.++...|.|
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDE----------PTsGLD~~~~~~l~~lL~~L~~~G~t 785 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDE----------PTTGLHPADVERLQRQLVKLVDAGNT 785 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEEC----------TTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 456788999999999999998 3 379999999 99999999999999999988655543
No 152
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.02 E-value=8.9e-11 Score=97.30 Aligned_cols=59 Identities=10% Similarity=0.070 Sum_probs=48.5
Q ss_pred CCCCCCCChhHHHHHHHhhcc---CceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAI 76 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~---~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~ 76 (378)
++.||||||||++|++++... +.+|+ ++++.+.+. .....+|+.|. +++|||||+|.+-
T Consensus 28 ll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a~------~g~l~ldei~~l~ 89 (145)
T 3n70_A 28 WLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALAQ------GGTLVLSHPEHLT 89 (145)
T ss_dssp EEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHHT------TSCEEEECGGGSC
T ss_pred EEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHcC------CcEEEEcChHHCC
Confidence 578999999999999999987 67999 999988765 23456676664 4699999999885
No 153
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.02 E-value=1.5e-09 Score=101.01 Aligned_cols=68 Identities=26% Similarity=0.319 Sum_probs=49.2
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc---eEEEeccCcccc
Q psy6098 212 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC---TFIRVSGSELVQ 283 (378)
Q Consensus 212 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~---~~i~~~~~~l~~ 283 (378)
++.|++.+++.+...+....... .-.-.+...++|+||||||||+++++|++.+.. +++.++...+..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~----~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~ 88 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGL----KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 88 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTC----SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS
T ss_pred hcCCHHHHHHHHHHHHHHHhcCC----CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc
Confidence 67899999999988876521100 001123347999999999999999999998743 488888776543
No 154
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.02 E-value=1.6e-10 Score=99.06 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=60.9
Q ss_pred CCCCCCCCChhHHHHHHHhhcc----------CceEEEecccccc--ccccchhHHHHHHHHHHHHhcCCCCCceEEEee
Q psy6098 4 PLHPTWIVSGKTLLARAVAHHT----------ECTFIRVSGSELV--QKFIGEGSRMVRELFVMARCKGSSRGTEFFTMD 71 (378)
Q Consensus 4 ~~~~~pPGtGKt~~a~~~a~~~----------~~~~~~v~~~~~~--~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DE 71 (378)
-++.||||||||++|+++|..+ +.+++.++.+++. ..+.|+.+..++.+|+.+.... .+.||||||
T Consensus 46 ~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vl~iDe 123 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQE--GNVILFIDE 123 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHST--TTEEEEEET
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcC--CCeEEEEeC
Confidence 3678999999999999999986 7899999999887 5688999999999998775422 234999999
Q ss_pred hhhhhhc
Q psy6098 72 VDEAIKS 78 (378)
Q Consensus 72 id~~~~~ 78 (378)
++.+...
T Consensus 124 ~~~l~~~ 130 (195)
T 1jbk_A 124 LHTMVGA 130 (195)
T ss_dssp GGGGTT-
T ss_pred HHHHhcc
Confidence 9999754
No 155
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.01 E-value=4.5e-11 Score=98.86 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=49.8
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIK 77 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~ 77 (378)
++.||||||||++||+++...+ +|+.++++++...+ .+.+|+.|. ++++||||++.+..
T Consensus 31 ll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a~------~~~l~lDei~~l~~ 89 (143)
T 3co5_A 31 FLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKAE------GGVLYVGDIAQYSR 89 (143)
T ss_dssp EEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHTT------TSEEEEEECTTCCH
T ss_pred EEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhCC------CCeEEEeChHHCCH
Confidence 4679999999999999999988 99999999987655 466777664 46999999998853
No 156
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.01 E-value=1.1e-10 Score=99.94 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=61.4
Q ss_pred CCCCCCCCChhHHHHHHHhhcc----------CceEEEecccccc--ccccchhHHHHHHHHHHHHhcCCCCCceEEEee
Q psy6098 4 PLHPTWIVSGKTLLARAVAHHT----------ECTFIRVSGSELV--QKFIGEGSRMVRELFVMARCKGSSRGTEFFTMD 71 (378)
Q Consensus 4 ~~~~~pPGtGKt~~a~~~a~~~----------~~~~~~v~~~~~~--~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DE 71 (378)
.++.||||||||++|+++|..+ +.+++.++.+++. ..+.|..+..++.+|..+... ..+.+|||||
T Consensus 46 vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vl~iDe 123 (187)
T 2p65_A 46 PILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDA--EGQVVMFIDE 123 (187)
T ss_dssp EEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHT--TTSEEEEETT
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhc--CCceEEEEeC
Confidence 4678999999999999999987 7899999988887 457888899999999888754 1234999999
Q ss_pred hhhhhhc
Q psy6098 72 VDEAIKS 78 (378)
Q Consensus 72 id~~~~~ 78 (378)
++.+...
T Consensus 124 ~~~l~~~ 130 (187)
T 2p65_A 124 IHTVVGA 130 (187)
T ss_dssp GGGGSSS
T ss_pred HHHhccc
Confidence 9999754
No 157
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.00 E-value=9.3e-10 Score=115.25 Aligned_cols=103 Identities=23% Similarity=0.385 Sum_probs=79.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhc----------CceEE
Q psy6098 205 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECTFI 274 (378)
Q Consensus 205 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~----------~~~~i 274 (378)
..+..+++++|.++.++++.+.+.. ..+.+++|+||||||||++++.+++.+ +..++
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~ 246 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence 4456788999999999988776543 245578999999999999999999876 34466
Q ss_pred EeccCccc--ccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCC
Q psy6098 275 RVSGSELV--QKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSR 349 (378)
Q Consensus 275 ~~~~~~l~--~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r 349 (378)
.++...+. ..+.++.+..+..+|..+ +...+.||||||+|.+.+.+
T Consensus 247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~-----------------------------~~~~~~iL~IDEi~~l~~~~ 294 (758)
T 1r6b_X 247 SLDIGSLLAGTKYRGDFEKRFKALLKQL-----------------------------EQDTNSILFIDEIHTIIGAG 294 (758)
T ss_dssp ECCCC---CCCCCSSCHHHHHHHHHHHH-----------------------------SSSSCEEEEETTTTTTTTSC
T ss_pred EEcHHHHhccccccchHHHHHHHHHHHH-----------------------------HhcCCeEEEEechHHHhhcC
Confidence 66666655 457788888888888766 45578999999999998775
No 158
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=1.7e-09 Score=102.71 Aligned_cols=59 Identities=22% Similarity=0.264 Sum_probs=45.4
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhh-cCc
Q psy6098 201 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH-TEC 271 (378)
Q Consensus 201 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~-~~~ 271 (378)
+++.+++.+|++++|++++++.++..+.. .....+++|+||||+||||+++++++. .++
T Consensus 4 w~~kyrP~~~~~~vg~~~~~~~l~~~~~~------------~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~ 63 (354)
T 1sxj_E 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQ------------PRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63 (354)
T ss_dssp CTTTTCCCSGGGCCSCHHHHHHHHTTTTC------------TTCCCCEEEECSTTSSHHHHHHTHHHHHSCT
T ss_pred chhccCCCCHHHhcCCHHHHHHHHHHHhh------------CCCCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 45677889999999999999888766411 011223999999999999999999994 443
No 159
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.99 E-value=8.7e-10 Score=103.60 Aligned_cols=65 Identities=28% Similarity=0.331 Sum_probs=44.2
Q ss_pred CCCCccccc-C--cHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhc---CceEEEeccC
Q psy6098 206 PDSTYEMVG-G--LDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGS 279 (378)
Q Consensus 206 ~~~~~~~i~-g--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~---~~~~i~~~~~ 279 (378)
+..+|++++ | .......+...+..+ -..+..++|+||||||||++++++++.+ +.+++.++..
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 345677775 4 334444444443331 1235679999999999999999999988 6667777765
Q ss_pred cc
Q psy6098 280 EL 281 (378)
Q Consensus 280 ~l 281 (378)
++
T Consensus 75 ~~ 76 (324)
T 1l8q_A 75 DF 76 (324)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 160
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.98 E-value=4.8e-10 Score=117.59 Aligned_cols=58 Identities=17% Similarity=0.054 Sum_probs=49.7
Q ss_pred CchhhhhHhhhhhhhhhccccc--CC---CeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 310 HPLLFWSLLTILTNTIVCNFRE--HA---PSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~--~~---p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
.....+..||+|++|++.+++. .. |.|+|||| ||+|+|+.....++++|.++...|.|
T Consensus 838 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDE----------PTsGLD~~~~~~l~~lL~~L~~~G~T 900 (972)
T 2r6f_A 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDE----------PTTGLHVDDIARLLDVLHRLVDNGDT 900 (972)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEEC----------TTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 4566788999999999999988 33 69999999 99999999999999999988655543
No 161
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.97 E-value=4.9e-10 Score=117.92 Aligned_cols=58 Identities=19% Similarity=0.062 Sum_probs=49.5
Q ss_pred CchhhhhHhhhhhhhhhccccc--C---CCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 310 HPLLFWSLLTILTNTIVCNFRE--H---APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~--~---~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
.....+..||+|++|++.+++. . .|.|+|||| ||+|+|+.....+.++|.++...|.|
T Consensus 856 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDE----------PTsGLD~~~~~~l~~lL~~L~~~G~T 918 (993)
T 2ygr_A 856 RLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDE----------PTTGLHFDDIRKLLNVINGLVDKGNT 918 (993)
T ss_dssp BTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEES----------TTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred cccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 4556788999999999999988 3 369999999 99999999999999999988655543
No 162
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.95 E-value=2.8e-09 Score=100.68 Aligned_cols=71 Identities=30% Similarity=0.368 Sum_probs=53.2
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCc
Q psy6098 202 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 280 (378)
Q Consensus 202 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~ 280 (378)
.+.+.+.++++.+|++.+++.+...+..... -+ .++..++|+||||+|||||+++||+.++.++...++..
T Consensus 16 ~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~ 86 (334)
T 1in4_A 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKM-------RG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV 86 (334)
T ss_dssp -CTTSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred HHHcCCccHHHccCcHHHHHHHHHHHHHHHh-------cC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence 3456677899999999998888776653110 01 24468999999999999999999999987766666543
No 163
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.95 E-value=1.4e-10 Score=114.61 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=48.1
Q ss_pred CCCCCCCCCCChhHHHHHHHhhcc----------CceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEe
Q psy6098 2 LKPLHPTWIVSGKTLLARAVAHHT----------ECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTM 70 (378)
Q Consensus 2 ~~~~~~~pPGtGKt~~a~~~a~~~----------~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~D 70 (378)
-||+++||||||||++|+++|..+ +.+|+.++.+ ++|.|+.+.+++.+|+.++...++ |||||
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~---iLfiD 274 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNI---ILFID 274 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCC---EEEEC
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCe---EEEEe
Confidence 368999999999999999999996 7899999988 889999999999999999976555 99999
No 164
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.94 E-value=3.2e-09 Score=93.03 Aligned_cols=65 Identities=37% Similarity=0.472 Sum_probs=49.8
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC-----ceEEEec
Q psy6098 203 EKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-----CTFIRVS 277 (378)
Q Consensus 203 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~-----~~~i~~~ 277 (378)
+.+++..|++++|.++.++.+.+.+... ....++|+||+|+|||++++.++..+. ..++.++
T Consensus 9 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 75 (226)
T 2chg_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (226)
T ss_dssp HHTSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred HhcCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence 4466778999999999999998886541 122499999999999999999998752 2366666
Q ss_pred cCc
Q psy6098 278 GSE 280 (378)
Q Consensus 278 ~~~ 280 (378)
...
T Consensus 76 ~~~ 78 (226)
T 2chg_A 76 ASD 78 (226)
T ss_dssp TTC
T ss_pred ccc
Confidence 543
No 165
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.92 E-value=1.5e-09 Score=90.29 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=32.9
Q ss_pred CCcceeEeCCCCCchHHHHHHHhhhc---CceEEEeccCcccc
Q psy6098 244 QPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSELVQ 283 (378)
Q Consensus 244 ~~~~~ll~Gp~G~GKTtl~~~ia~~~---~~~~i~~~~~~l~~ 283 (378)
+++.++|+||||+|||||++++++.+ +...+.+++.++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~ 77 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPL 77 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhH
Confidence 67899999999999999999999987 33467777766544
No 166
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.92 E-value=2.2e-10 Score=115.31 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=50.4
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccc---------cccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQ---------KFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEA 75 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~---------~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~ 75 (378)
++.||||||||++||++|..++.+|+.|+.+.+.. +|+|.....+..+|..|... +.|+|+||+|.+
T Consensus 112 ll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~----~~vl~lDEid~l 187 (543)
T 3m6a_A 112 CLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKL----NPVFLLDEIDKM 187 (543)
T ss_dssp EEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSS----SEEEEEEESSSC
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhcc----CCEEEEhhhhhh
Confidence 57899999999999999999999999999877654 78999999999999877533 348999999988
Q ss_pred hhc
Q psy6098 76 IKS 78 (378)
Q Consensus 76 ~~~ 78 (378)
...
T Consensus 188 ~~~ 190 (543)
T 3m6a_A 188 SSD 190 (543)
T ss_dssp C--
T ss_pred hhh
Confidence 754
No 167
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=2.3e-09 Score=101.51 Aligned_cols=69 Identities=26% Similarity=0.391 Sum_probs=52.9
Q ss_pred hccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc------eE
Q psy6098 200 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC------TF 273 (378)
Q Consensus 200 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~------~~ 273 (378)
.+.+.+++.+|++++|++++++.+...+... ...+++|+||||+|||++++++++.+.. .+
T Consensus 26 ~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~ 92 (353)
T 1sxj_D 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRI 92 (353)
T ss_dssp CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSE
T ss_pred cHHHhcCCCCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccce
Confidence 4556678889999999999999988775431 1124999999999999999999998652 36
Q ss_pred EEeccCcc
Q psy6098 274 IRVSGSEL 281 (378)
Q Consensus 274 i~~~~~~l 281 (378)
+.++..+.
T Consensus 93 ~~~~~~~~ 100 (353)
T 1sxj_D 93 LELNASDE 100 (353)
T ss_dssp EEECSSSC
T ss_pred EEEccccc
Confidence 66766543
No 168
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.91 E-value=1.7e-09 Score=113.94 Aligned_cols=57 Identities=19% Similarity=0.065 Sum_probs=48.5
Q ss_pred chhhhhHhhhhhhhhhccccc--C---CCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 311 PLLFWSLLTILTNTIVCNFRE--H---APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~--~---~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
.......||+|++||+.+|++ . .|.|+|||| ||+|+|+.....+.++|.++...|.|
T Consensus 799 lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDE----------PTsGLD~~~~~~L~~lL~~L~~~G~T 860 (916)
T 3pih_A 799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDE----------PTVGLHFEDVRKLVEVLHRLVDRGNT 860 (916)
T ss_dssp TTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEES----------TTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred ccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHHhcCCE
Confidence 345667899999999999998 2 368999999 99999999999999999988655544
No 169
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.91 E-value=2.2e-09 Score=97.84 Aligned_cols=64 Identities=27% Similarity=0.309 Sum_probs=45.0
Q ss_pred CCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC---ceEEEeccCccc
Q psy6098 208 STYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---CTFIRVSGSELV 282 (378)
Q Consensus 208 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~---~~~i~~~~~~l~ 282 (378)
.+|++++|.+...+++.+.+.... ..+..++|+||||||||+++++|+..+. .+++.++++.+.
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~ 69 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN 69 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC
Confidence 367789999999888877665421 1245799999999999999999999876 458888887663
No 170
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.90 E-value=8.8e-09 Score=118.68 Aligned_cols=85 Identities=20% Similarity=0.236 Sum_probs=57.6
Q ss_pred CCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCccccccc-chhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhh
Q psy6098 243 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFI-GEGSRMVRELFVMASLKKLAFAHHPLLFWSLLTIL 321 (378)
Q Consensus 243 ~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~~~~-~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 321 (378)
.|+.+++|+|++||||++|+|..|-+.+...+.+..+ ..|- .+-...++.++..|+.
T Consensus 1607 ~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~---~~Y~~~~f~eDLk~l~~~aG~------------------- 1664 (2695)
T 4akg_A 1607 QVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIH---RHSNLSDFDMILKKAISDCSL------------------- 1664 (2695)
T ss_dssp SSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCC---TTCCHHHHHHHHHHHHHHHHH-------------------
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEee---CCCCHHHHHHHHHHHHHHcCC-------------------
Confidence 3556899999999999999999999998887766543 2221 1223356666666632
Q ss_pred hhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHH
Q psy6098 322 TNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 369 (378)
Q Consensus 322 ~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~ 369 (378)
...|-+++|+| +.-.++..-+.++.+|.
T Consensus 1665 ---------~~~~~vFL~tD-----------~qi~~e~FLE~IN~lL~ 1692 (2695)
T 4akg_A 1665 ---------KESRTCLIIDE-----------SNILETAFLERMNTLLA 1692 (2695)
T ss_dssp ---------SCCCEEEEEET-----------TTCCSHHHHHHHHHHHH
T ss_pred ---------CCCceEEEEec-----------cccccHHHHHHHHHHHc
Confidence 35788999998 33345555555666654
No 171
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.89 E-value=5.8e-10 Score=106.50 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=33.3
Q ss_pred CCCCCCCChhHHHHHHHhhccCc--eEEEeccccccccccch
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTEC--TFIRVSGSELVQKFIGE 44 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~--~~~~v~~~~~~~~~~Ge 44 (378)
++.||||||||++|+++|+.++. +|+.++++++.+.+.++
T Consensus 74 Ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 74 LIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSK 115 (368)
T ss_dssp EEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCH
T ss_pred EEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccch
Confidence 67899999999999999999985 88889987765555444
No 172
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.89 E-value=4.6e-10 Score=104.86 Aligned_cols=69 Identities=13% Similarity=0.017 Sum_probs=54.1
Q ss_pred CCCCCCCChhHHHHHHHhhcc----------CceEEEecccccccc----------c------cchhHHHHHHHHHHH--
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT----------ECTFIRVSGSELVQK----------F------IGEGSRMVRELFVMA-- 56 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~----------~~~~~~v~~~~~~~~----------~------~Gese~~~~~~f~~a-- 56 (378)
++.||||||||++++.+++++ +..+++||+..+.+. + .|++.+.++.+|+..
T Consensus 49 li~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~ 128 (318)
T 3te6_A 49 YITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPK 128 (318)
T ss_dssp EEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCG
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhh
Confidence 578999999999999999998 468999998765432 2 356788899999875
Q ss_pred HhcCCCCCceEEEeehhhhh
Q psy6098 57 RCKGSSRGTEFFTMDVDEAI 76 (378)
Q Consensus 57 ~~~~~~~~~ilf~DEid~~~ 76 (378)
....+ .|+|+||+|.+.
T Consensus 129 ~~~~~---~ii~lDE~d~l~ 145 (318)
T 3te6_A 129 AKKRK---TLILIQNPENLL 145 (318)
T ss_dssp GGSCE---EEEEEECCSSSC
T ss_pred ccCCc---eEEEEecHHHhh
Confidence 22233 499999999997
No 173
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.89 E-value=2.8e-09 Score=99.55 Aligned_cols=62 Identities=18% Similarity=0.093 Sum_probs=45.7
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC----------ceEEEeccCccc
Q psy6098 213 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE----------CTFIRVSGSELV 282 (378)
Q Consensus 213 i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~----------~~~i~~~~~~l~ 282 (378)
+-+-+++.++|...+.. .+.-..+.+++|+||||||||++++.++..+. ..++.+++..+.
T Consensus 22 L~~Re~E~~~i~~~L~~---------~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYD---------SLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHH---------HhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 45667777777666543 22335677899999999999999999998873 358889887664
Q ss_pred c
Q psy6098 283 Q 283 (378)
Q Consensus 283 ~ 283 (378)
+
T Consensus 93 t 93 (318)
T 3te6_A 93 G 93 (318)
T ss_dssp -
T ss_pred C
Confidence 4
No 174
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.87 E-value=4.4e-09 Score=103.08 Aligned_cols=37 Identities=19% Similarity=0.430 Sum_probs=30.1
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhc-----CceEEEeccCcc
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHT-----ECTFIRVSGSEL 281 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~-----~~~~i~~~~~~l 281 (378)
+..++|+||||+|||||+++|++.+ +..++.++..++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 4579999999999999999999987 445677766543
No 175
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.86 E-value=1.3e-08 Score=97.22 Aligned_cols=62 Identities=27% Similarity=0.409 Sum_probs=49.1
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhc---------CceEEEeccCcc
Q psy6098 211 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---------ECTFIRVSGSEL 281 (378)
Q Consensus 211 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~---------~~~~i~~~~~~l 281 (378)
+++.|.++.++++...+.... .-..+..++|+||||+|||++++.++..+ +..++.+++...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~---------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL---------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT---------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 579999999999887764311 12445689999999999999999999887 666888887654
No 176
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.86 E-value=1.6e-09 Score=103.54 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=47.6
Q ss_pred hhhhHhhhhhhhhhccccc--------CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 313 LFWSLLTILTNTIVCNFRE--------HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~--------~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
..+..||+|++|++.++++ ..|++||||| |++++|+.....+.++|.++...+.|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDE----------pt~~LD~~~~~~~~~~l~~l~~~g~t 337 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDE----------GFSSLDTENKEKIASVLKELERLNKV 337 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEES----------CCTTSCHHHHHHHHHHHHGGGGSSSE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeC----------CCccCCHHHHHHHHHHHHHHHhCCCE
Confidence 3566899999999998765 4899999999 99999999999999999998765543
No 177
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.84 E-value=2e-08 Score=89.02 Aligned_cols=58 Identities=26% Similarity=0.383 Sum_probs=46.0
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 202 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 202 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
.+...+..+++++|.+++++.+.+.+... ..+..++|+||+|+|||++++.++..+..
T Consensus 14 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 14 ARKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp HHHTCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred hhccCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34566778889999999999998886531 12347899999999999999999987643
No 178
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.83 E-value=3.9e-09 Score=96.66 Aligned_cols=95 Identities=12% Similarity=0.136 Sum_probs=58.4
Q ss_pred ceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc-------c----------------cch--------hHHHH
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK-------F----------------IGE--------GSRMV 293 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~-------~----------------~~~--------~~~~v 293 (378)
.++|+||||+|||||+++|+|...+. .+.+++.++... + ++. ....+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 47899999999999999999988765 454444332110 0 000 00112
Q ss_pred HHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHH
Q psy6098 294 RELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQ 361 (378)
Q Consensus 294 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~ 361 (378)
.+... ..........+|+|++|++.++|++. +++|||| |+.++++...
T Consensus 84 ~~~~~---------~~~~~~~~~~LS~G~~qrv~iaRal~-~llllde----------p~~gL~~lD~ 131 (270)
T 3sop_A 84 EKYIN---------EQYEKFLKEEVNIARKKRIPDTRVHC-CLYFISP----------TGHSLRPLDL 131 (270)
T ss_dssp HHHHH---------HHHHHHHHHHSCTTCCSSCCCCSCCE-EEEEECC----------CSSSCCHHHH
T ss_pred HHHHH---------HHHHhhhHHhcCcccchhhhhheeee-eeEEEec----------CCCcCCHHHH
Confidence 22111 12233456789999999999999854 6999999 8899998764
No 179
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=1.5e-08 Score=95.77 Aligned_cols=68 Identities=32% Similarity=0.515 Sum_probs=51.7
Q ss_pred hccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce-----EE
Q psy6098 200 MMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT-----FI 274 (378)
Q Consensus 200 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-----~i 274 (378)
.+.+.+++.+|+++.|++++++.|...+.. + ..+ +++|+|||||||||+++++|+.+.+. ++
T Consensus 14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred chHHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 455667888999999999999998877653 1 111 38999999999999999999986432 55
Q ss_pred EeccCc
Q psy6098 275 RVSGSE 280 (378)
Q Consensus 275 ~~~~~~ 280 (378)
.++.++
T Consensus 81 ~~~~~~ 86 (340)
T 1sxj_C 81 ELNASD 86 (340)
T ss_dssp EECTTS
T ss_pred EEcCcc
Confidence 555543
No 180
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.82 E-value=4.5e-09 Score=103.88 Aligned_cols=81 Identities=21% Similarity=0.347 Sum_probs=55.6
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhc----------CceE
Q psy6098 204 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECTF 273 (378)
Q Consensus 204 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~----------~~~~ 273 (378)
...+..+++++|.++.++.+.+.+.. ....+++|+||||||||++++++|..+ +..+
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 239 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeE
Confidence 45566788999999999998877643 123468999999999999999999886 4457
Q ss_pred EEeccCcccccccchhHHHHHHHHHHh
Q psy6098 274 IRVSGSELVQKFIGEGSRMVRELFVMA 300 (378)
Q Consensus 274 i~~~~~~l~~~~~~~~~~~v~~~~~~a 300 (378)
+.++.. ..|.|+.+..+..+|..+
T Consensus 240 ~~l~~~---~~~~g~~e~~~~~~~~~~ 263 (468)
T 3pxg_A 240 MTLDMG---TKYRGEFEDRLKKVMDEI 263 (468)
T ss_dssp ECC-------------CTTHHHHHHHH
T ss_pred EEeeCC---ccccchHHHHHHHHHHHH
Confidence 777665 556666666677777766
No 181
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.82 E-value=1.7e-08 Score=94.21 Aligned_cols=67 Identities=30% Similarity=0.467 Sum_probs=51.6
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc-----eEEE
Q psy6098 201 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC-----TFIR 275 (378)
Q Consensus 201 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-----~~i~ 275 (378)
+.+.+++.+|++++|++++++.+...+.. + ....++|+||||+|||+++++++..+.. .++.
T Consensus 15 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~ 81 (327)
T 1iqp_A 15 WVEKYRPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLE 81 (327)
T ss_dssp HHHHTCCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred hhhccCCCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEE
Confidence 45567888999999999999999887653 1 1224999999999999999999987632 2666
Q ss_pred eccCc
Q psy6098 276 VSGSE 280 (378)
Q Consensus 276 ~~~~~ 280 (378)
+++++
T Consensus 82 ~~~~~ 86 (327)
T 1iqp_A 82 LNASD 86 (327)
T ss_dssp EETTC
T ss_pred eeccc
Confidence 66543
No 182
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.82 E-value=3.7e-09 Score=98.78 Aligned_cols=98 Identities=14% Similarity=0.189 Sum_probs=64.0
Q ss_pred CCCCcceeEeCCCCCchHHHHHHHhhhcCce-------EEEeccCcccccc----------cchhH----HHHHHHHHHh
Q psy6098 242 IAQPKGVLLYGPPGTGKTLLARAVAHHTECT-------FIRVSGSELVQKF----------IGEGS----RMVRELFVMA 300 (378)
Q Consensus 242 ~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~-------~i~~~~~~l~~~~----------~~~~~----~~v~~~~~~a 300 (378)
+.+|+.++|.||||||||||+++|++.+.+. ++..+.. +.... .+... ..+.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~-~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~---- 161 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF-LYPNAELQRRNLMHRKGFPESYNRRALMRF---- 161 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG-BCCHHHHHHTTCTTCTTSGGGBCHHHHHHH----
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc-CCcccHHHHHHHHHhcCCChHHHHHHHHHH----
Confidence 6788999999999999999999999987641 2222221 11100 01110 112222
Q ss_pred hhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCcccc
Q psy6098 301 SLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIG 346 (378)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~ 346 (378)
+..+. .......+..+|.|++|++.++++ ..|.|||+||+..+.
T Consensus 162 -L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~ 207 (312)
T 3aez_A 162 -VTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQ 207 (312)
T ss_dssp -HHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTC
T ss_pred -HHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccC
Confidence 22223 233345677899999999998876 889999999976654
No 183
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.81 E-value=8.5e-10 Score=99.27 Aligned_cols=39 Identities=33% Similarity=0.351 Sum_probs=30.5
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHh--hhcCc--eEEEeccC
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVA--HHTEC--TFIRVSGS 279 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia--~~~~~--~~i~~~~~ 279 (378)
++.+|+.++|+||||||||||+++|+ +...+ ..+.+.+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 78899999999999999999999999 55222 24455443
No 184
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.81 E-value=9.6e-09 Score=95.53 Aligned_cols=108 Identities=15% Similarity=0.196 Sum_probs=71.5
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------------ccc------hhHHHHH
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------------FIG------EGSRMVR 294 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------------~~~------~~~~~v~ 294 (378)
++.+.+|+.++|+||||+||||+++.||+.+.+. .|.+.+.++... ++. .....+.
T Consensus 94 ~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~ 173 (302)
T 3b9q_A 94 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLS 173 (302)
T ss_dssp CCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHH
Confidence 5567889999999999999999999999998654 667766554210 111 1223455
Q ss_pred HHHHHhhh--------hhhhhccCchhhhhHhhhhhhhhhccccc--CCCe--EEEEecCccccCCCCCCCCCCChHH
Q psy6098 295 ELFVMASL--------KKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPS--IIFMDEIDSIGSSRIESGSGGDSEV 360 (378)
Q Consensus 295 ~~~~~a~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~--vl~lDEid~~~~~r~~~~~~~d~~~ 360 (378)
+.+..+.. +..+........+..+| +|++.++++ ..|. +|++|= ++++|+..
T Consensus 174 e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLDp-----------tsglD~~~ 237 (302)
T 3b9q_A 174 KAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLDG-----------NTGLNMLP 237 (302)
T ss_dssp HHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEEG-----------GGGGGGHH
T ss_pred HHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEeC-----------CCCcCHHH
Confidence 55554321 11122334455666777 788888777 6799 999983 56777754
No 185
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.81 E-value=1.3e-09 Score=102.39 Aligned_cols=69 Identities=16% Similarity=0.069 Sum_probs=54.5
Q ss_pred CCCCCCCChhHHHHHHHhhcc---CceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIK 77 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~---~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~ 77 (378)
++.||||||||++|+++++.+ +.+|+.++++++...+.+.........|..+.. .++ +|||||++.+..
T Consensus 41 ll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---vL~iDEi~~l~~ 112 (324)
T 1l8q_A 41 FIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK-SVD---LLLLDDVQFLSG 112 (324)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH-TCS---EEEEECGGGGTT
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhc-CCC---EEEEcCcccccC
Confidence 357999999999999999998 899999999999887776665544444544432 244 999999999864
No 186
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.80 E-value=1.7e-08 Score=94.15 Aligned_cols=66 Identities=24% Similarity=0.397 Sum_probs=50.7
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC-----ceEEEe
Q psy6098 202 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-----CTFIRV 276 (378)
Q Consensus 202 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~-----~~~i~~ 276 (378)
.+.+++..|++++|++++++.+.+.+.. + ..+ .++|+||+|+|||++++.++..+. ..++.+
T Consensus 12 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 78 (323)
T 1sxj_B 12 VEKYRPQVLSDIVGNKETIDRLQQIAKD-----------G-NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLEL 78 (323)
T ss_dssp HHHTCCSSGGGCCSCTHHHHHHHHHHHS-----------C-CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred HHhcCCCCHHHHHCCHHHHHHHHHHHHc-----------C-CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEe
Confidence 4456777899999999999999888653 1 112 399999999999999999998763 236777
Q ss_pred ccCc
Q psy6098 277 SGSE 280 (378)
Q Consensus 277 ~~~~ 280 (378)
+..+
T Consensus 79 ~~~~ 82 (323)
T 1sxj_B 79 NASD 82 (323)
T ss_dssp CTTS
T ss_pred cCcc
Confidence 6654
No 187
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.80 E-value=8.8e-11 Score=113.60 Aligned_cols=109 Identities=9% Similarity=0.045 Sum_probs=71.2
Q ss_pred cceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcc------c------c----cccch--hHHHHHHHHHHhhhhhh
Q psy6098 246 KGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL------V------Q----KFIGE--GSRMVRELFVMASLKKL 305 (378)
Q Consensus 246 ~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l------~------~----~~~~~--~~~~v~~~~~~a~~~~~ 305 (378)
..++|.||||+|||||+++|+|...+. .|.+++.+. . . ..++. ....+.++++...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~---- 145 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMK---- 145 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTT----
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcC----
Confidence 389999999999999999999976643 233322211 0 0 01111 1122344444332
Q ss_pred hhccCchhhhhHhhhh--hhhhhccccc--C----------CCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhc
Q psy6098 306 AFAHHPLLFWSLLTIL--TNTIVCNFRE--H----------APSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 371 (378)
Q Consensus 306 ~~~~~~~~~~~~~~~~--~~~~~~~~~~--~----------~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l 371 (378)
+....... . +|.| ++|++.++++ + +|+++++|| |++++|+..+..+.++|.++
T Consensus 146 -L~~~~~~~-~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDE----------PtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 146 -FYEYDFFI-I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNE----------ADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp -GGGCSEEE-E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHH----------HTTCCTTCCHHHHHHHHHHH
T ss_pred -CCccCCeE-E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCc----------ccccCCHHHHHHHHHHHHHH
Confidence 22222222 2 7888 9999988776 4 889999999 99999998888888888776
No 188
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.79 E-value=7.6e-09 Score=97.23 Aligned_cols=51 Identities=20% Similarity=0.036 Sum_probs=45.0
Q ss_pred hhhhhHhhhhhhhhhccccc------CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhcc
Q psy6098 312 LLFWSLLTILTNTIVCNFRE------HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLD 372 (378)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~------~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~ 372 (378)
...+..+|.|++|+++++++ .+|+|++||| |++++|+.....+.++|.++.
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDE----------p~~~LD~~~~~~l~~~l~~~~ 270 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDE----------VDSPLDDYNAERFKRLLKENS 270 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEES----------CCSSCCHHHHHHHHHHHHHHT
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHhc
Confidence 34567899999999999986 3688999999 999999999999999999874
No 189
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.78 E-value=3.5e-09 Score=103.87 Aligned_cols=66 Identities=27% Similarity=0.257 Sum_probs=52.1
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcC-CCCCceEEEeehhhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKG-SSRGTEFFTMDVDEAIK 77 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~-~~~~~ilf~DEid~~~~ 77 (378)
++.||||||||++|+++|+.++.+|+.++... .+.+.++++|+.|+... .+.++||||||++.+..
T Consensus 54 LL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~ 120 (447)
T 3pvs_A 54 ILWGPPGTGKTTLAEVIARYANADVERISAVT-------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNK 120 (447)
T ss_dssp EEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH
Confidence 67899999999999999999999999998643 33456888888887431 23457999999998854
No 190
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.78 E-value=2.1e-09 Score=113.39 Aligned_cols=104 Identities=17% Similarity=0.157 Sum_probs=66.2
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc---------eEEEeccCcccccccchhHHHHHHHHHHhhhhhhhhcc
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC---------TFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAH 309 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~---------~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~ 309 (378)
++.+.+++.++|+||||+||||++|++++..-. ....+.. ... .+.++....
T Consensus 667 sl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~---~d~----------------i~~~ig~~d 727 (918)
T 3thx_B 667 DLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGI---VDG----------------IFTRMGAAD 727 (918)
T ss_dssp EECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEEC---CSE----------------EEEEC----
T ss_pred cccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhH---HHH----------------HHHhCChHH
Confidence 456778899999999999999999999864211 1111110 000 011111222
Q ss_pred CchhhhhHhhhhhhhhhccccc-CCCeEEEEecCccccCCCCCCCCCCChHHHHHHH-HHHHhc
Q psy6098 310 HPLLFWSLLTILTNTIVCNFRE-HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML-ELLNQL 371 (378)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~-~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~-~lL~~l 371 (378)
......+.++.++.++..+++. ..|++|+||| |++|+|+.....+. .++..+
T Consensus 728 ~l~~~~stfs~em~~~~~il~~a~~p~LlLLDE----------P~~GlD~~~~~~i~~~il~~L 781 (918)
T 3thx_B 728 NIYKGRSTFMEELTDTAEIIRKATSQSLVILDE----------LGRGTSTHDGIAIAYATLEYF 781 (918)
T ss_dssp ------CCHHHHHHHHHHHHHHCCTTCEEEEES----------TTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHH
Confidence 2233455677888888777765 8999999999 99999997766665 777766
No 191
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=4.6e-10 Score=112.39 Aligned_cols=73 Identities=16% Similarity=0.036 Sum_probs=52.1
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHH-------HHHHHHHHHhc--CCCCCceEEEeehhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRM-------VRELFVMARCK--GSSRGTEFFTMDVDEA 75 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~-------~~~~f~~a~~~--~~~~~~ilf~DEid~~ 75 (378)
++.||||||||++|+++|++++..|++++++++.+.+.++.... ++.+|..+... ......||||||+|.+
T Consensus 81 LL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l 160 (516)
T 1sxj_A 81 MLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGM 160 (516)
T ss_dssp EEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGC
T ss_pred EEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCcc
Confidence 56799999999999999999999999999999887654433221 33444433210 1123469999999988
Q ss_pred hh
Q psy6098 76 IK 77 (378)
Q Consensus 76 ~~ 77 (378)
..
T Consensus 161 ~~ 162 (516)
T 1sxj_A 161 SG 162 (516)
T ss_dssp CT
T ss_pred ch
Confidence 65
No 192
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.77 E-value=2.9e-10 Score=111.75 Aligned_cols=122 Identities=13% Similarity=0.040 Sum_probs=78.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce---E-EEeccCc------ccccc---cchhHHHHHHH-HHH----
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT---F-IRVSGSE------LVQKF---IGEGSRMVREL-FVM---- 299 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~---~-i~~~~~~------l~~~~---~~~~~~~v~~~-~~~---- 299 (378)
-++.+.+|+.++|+||||||||||+|+|+|+..+. . |.+++.. +++.. .......+.+. |-.
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~ 210 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTS 210 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBS
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhccccccc
Confidence 56778899999999999999999999999997543 3 6665521 01111 00000011111 100
Q ss_pred ---------hhhhhhhhccCchhhhhHhhhhhhhhhccccc----CCCeE----EEEecCccccCCCCCCCCCCChHHHH
Q psy6098 300 ---------ASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE----HAPSI----IFMDEIDSIGSSRIESGSGGDSEVQR 362 (378)
Q Consensus 300 ---------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~v----l~lDEid~~~~~r~~~~~~~d~~~~~ 362 (378)
..+..+++.... ....||+|++|+++++++ .+|.| ||||| -|++++|+. ..
T Consensus 211 ~~~~~~~~~~ll~~~gl~~~~--~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE---------pPts~LD~~-~~ 278 (460)
T 2npi_A 211 GATLLHNKQPMVKNFGLERIN--ENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT---------PSISQLDEN-LA 278 (460)
T ss_dssp SCCSSCCBCCEECCCCSSSGG--GCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC---------CCGGGSCSS-CH
T ss_pred CcchHHHHHHHHHHhCCCccc--chhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC---------CcccccChh-HH
Confidence 001111222222 277999999999999988 79999 99999 136788887 66
Q ss_pred HHHHHHHhc
Q psy6098 363 TMLELLNQL 371 (378)
Q Consensus 363 ~~~~lL~~l 371 (378)
.+.++++++
T Consensus 279 ~l~~l~~~~ 287 (460)
T 2npi_A 279 ELHHIIEKL 287 (460)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 777777664
No 193
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.76 E-value=1e-08 Score=95.54 Aligned_cols=61 Identities=23% Similarity=0.347 Sum_probs=47.1
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC---ceEEEeccCcccc
Q psy6098 212 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---CTFIRVSGSELVQ 283 (378)
Q Consensus 212 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~---~~~i~~~~~~l~~ 283 (378)
+++|.....+++.+.+... ...+..++|+||||||||+++++|+.... .+++.+++..+..
T Consensus 3 ~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~ 66 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE 66 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH
T ss_pred CcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCCh
Confidence 5778888888887776542 12345799999999999999999998764 4588888876643
No 194
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.76 E-value=1.3e-08 Score=94.85 Aligned_cols=67 Identities=37% Similarity=0.471 Sum_probs=50.9
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC-----ceEEE
Q psy6098 201 MVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE-----CTFIR 275 (378)
Q Consensus 201 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~-----~~~i~ 275 (378)
+.+.+++.+|++++|++++++.+.+.+.. .....++|+||+|+|||+++++++..+. ..++.
T Consensus 7 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 73 (319)
T 2chq_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (319)
T ss_dssp TTTTTSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEE
T ss_pred HHHhcCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEE
Confidence 44567788999999999999988766432 1122499999999999999999998762 23677
Q ss_pred eccCc
Q psy6098 276 VSGSE 280 (378)
Q Consensus 276 ~~~~~ 280 (378)
++.++
T Consensus 74 ~~~~~ 78 (319)
T 2chq_A 74 MNASD 78 (319)
T ss_dssp EETTS
T ss_pred EeCcc
Confidence 76654
No 195
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.75 E-value=4.6e-08 Score=99.67 Aligned_cols=60 Identities=35% Similarity=0.489 Sum_probs=48.3
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce---EEEecc
Q psy6098 204 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT---FIRVSG 278 (378)
Q Consensus 204 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~---~i~~~~ 278 (378)
.+++..|++++|++.+++.+...+. .+..++|+|||||||||++++|++.+.+. .+.+.+
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~ 96 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFP 96 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEEC
T ss_pred cccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeC
Confidence 4667788999999999988776654 24689999999999999999999998754 444443
No 196
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.74 E-value=3.4e-08 Score=94.16 Aligned_cols=58 Identities=26% Similarity=0.383 Sum_probs=46.5
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 202 VEKVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 202 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
.+.+++.+|++++|.+++++.+...+... ..+..++|+||+|+|||+++++++..+..
T Consensus 7 ~~k~rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 7 ARKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp HHHTCCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred HHhhCCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34567778999999999999998886531 12336899999999999999999987754
No 197
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.74 E-value=4.7e-08 Score=86.90 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=43.6
Q ss_pred CCcccccC---cHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC---ceEEEeccCcc
Q psy6098 208 STYEMVGG---LDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---CTFIRVSGSEL 281 (378)
Q Consensus 208 ~~~~~i~g---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~---~~~i~~~~~~l 281 (378)
.+|+++.| .+.+.+.+...+.. ..+..++|+||||||||+++++++..+. ..++.++..++
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 56777775 34666666655432 1456899999999999999999998765 33566665554
Q ss_pred c
Q psy6098 282 V 282 (378)
Q Consensus 282 ~ 282 (378)
.
T Consensus 92 ~ 92 (242)
T 3bos_A 92 A 92 (242)
T ss_dssp G
T ss_pred H
Confidence 3
No 198
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.74 E-value=6.1e-09 Score=98.27 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=47.6
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAI 76 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~ 76 (378)
++.||||||||++|+++|..++.+|+.++++.+- ....+..++.. -+.+++|||||++.+.
T Consensus 59 ll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~~-----~~~~~vl~lDEi~~l~ 119 (338)
T 3pfi_A 59 LFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILTN-----LSEGDILFIDEIHRLS 119 (338)
T ss_dssp EEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHHT-----CCTTCEEEEETGGGCC
T ss_pred EEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHHh-----ccCCCEEEEechhhcC
Confidence 5689999999999999999999999999998764 22334444432 1235699999999885
No 199
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.73 E-value=2e-08 Score=95.34 Aligned_cols=110 Identities=15% Similarity=0.202 Sum_probs=71.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc----------------cc------chhHHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK----------------FI------GEGSRMV 293 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~----------------~~------~~~~~~v 293 (378)
-++.+.+|+.++|+||||+||||+++.||+.+.+. .|.+.+.++... ++ ......+
T Consensus 150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv 229 (359)
T 2og2_A 150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVL 229 (359)
T ss_dssp CCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHH
T ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhH
Confidence 35667889999999999999999999999998654 666666554210 11 1222345
Q ss_pred HHHHHHhhhh--------hhhhccCchhhhhHhhhhhhhhhccccc--CCCe--EEEEecCccccCCCCCCCCCCChHHH
Q psy6098 294 RELFVMASLK--------KLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPS--IIFMDEIDSIGSSRIESGSGGDSEVQ 361 (378)
Q Consensus 294 ~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~--vl~lDEid~~~~~r~~~~~~~d~~~~ 361 (378)
.+.+..+... ..+........+..|| +|++.++++ ..|. +|++|= ++++|+..+
T Consensus 230 ~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLDp-----------ttglD~~~~ 295 (359)
T 2og2_A 230 SKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLDG-----------NTGLNMLPQ 295 (359)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEEG-----------GGGGGGHHH
T ss_pred HHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEcC-----------CCCCCHHHH
Confidence 5555543211 1122333445566777 778777776 7799 999983 567777543
No 200
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.73 E-value=1.2e-08 Score=106.72 Aligned_cols=81 Identities=21% Similarity=0.332 Sum_probs=56.7
Q ss_pred cCCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhc----------CceE
Q psy6098 204 KVPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------ECTF 273 (378)
Q Consensus 204 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~----------~~~~ 273 (378)
...+..+++++|.++.++.+.+.+.. ..+.+++|+||||||||++++++|..+ +..+
T Consensus 173 ~~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~ 239 (758)
T 3pxi_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (758)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE
Confidence 44566788999999999998877543 223469999999999999999999986 4456
Q ss_pred EEeccCcccccccchhHHHHHHHHHHh
Q psy6098 274 IRVSGSELVQKFIGEGSRMVRELFVMA 300 (378)
Q Consensus 274 i~~~~~~l~~~~~~~~~~~v~~~~~~a 300 (378)
+.++. ...|.|+.+..++.+|..+
T Consensus 240 ~~~~~---g~~~~G~~e~~l~~~~~~~ 263 (758)
T 3pxi_A 240 MTLDM---GTKYRGEFEDRLKKVMDEI 263 (758)
T ss_dssp ECC-------------CTTHHHHHHHH
T ss_pred EEecc---cccccchHHHHHHHHHHHH
Confidence 66665 4456777777888888777
No 201
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.73 E-value=7e-08 Score=92.35 Aligned_cols=62 Identities=19% Similarity=0.314 Sum_probs=47.3
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCc--ceeEeCCCCCchHHHHHHHhhhcC----ceEEEeccCcc
Q psy6098 211 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPK--GVLLYGPPGTGKTLLARAVAHHTE----CTFIRVSGSEL 281 (378)
Q Consensus 211 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~ll~Gp~G~GKTtl~~~ia~~~~----~~~i~~~~~~l 281 (378)
+++.|.++..+++.+.+..... + ..+. .++|+||||+||||+++.+++.+. ..++.+++...
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred CCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 5799999999999887654211 1 2334 799999999999999999999884 45777775543
No 202
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.72 E-value=1.2e-08 Score=92.89 Aligned_cols=43 Identities=21% Similarity=0.195 Sum_probs=34.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce---EEEeccCc
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT---FIRVSGSE 280 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~---~i~~~~~~ 280 (378)
..+.+.+++.++|+|||||||||++++|++.+.+. .|.+.+.+
T Consensus 18 ~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 18 LELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp HHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred HHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 34447889999999999999999999999998653 56665543
No 203
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.70 E-value=4.1e-08 Score=93.67 Aligned_cols=61 Identities=20% Similarity=0.422 Sum_probs=47.6
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhc------CceEEEeccCc
Q psy6098 211 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------ECTFIRVSGSE 280 (378)
Q Consensus 211 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~------~~~~i~~~~~~ 280 (378)
++++|.++..+.+.+.+..... -..+..++|+||+|+||||+++.+++.+ +..++.+++..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 5789999999998877543111 1446689999999999999999999987 66677777543
No 204
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.70 E-value=2.9e-08 Score=94.98 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=48.8
Q ss_pred ccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhc-----------CceEEEeccC
Q psy6098 211 EMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----------ECTFIRVSGS 279 (378)
Q Consensus 211 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~-----------~~~~i~~~~~ 279 (378)
+++.|.+++++++.+.+..... -..+..++|+||||+|||++++.++..+ +..++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 5789999999999887654211 1345589999999999999999999887 6678888765
Q ss_pred cc
Q psy6098 280 EL 281 (378)
Q Consensus 280 ~l 281 (378)
..
T Consensus 91 ~~ 92 (384)
T 2qby_B 91 EV 92 (384)
T ss_dssp HH
T ss_pred cC
Confidence 43
No 205
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.69 E-value=1.9e-08 Score=95.12 Aligned_cols=54 Identities=24% Similarity=0.271 Sum_probs=40.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 205 VPDSTYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 205 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
.++.+|+++.|+++++..+...... ..+.+++|+||||||||+++++++..++.
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCcc
Confidence 4567899999999987765433221 11235999999999999999999998764
No 206
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.68 E-value=1.2e-08 Score=88.24 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=62.1
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcccc-----cccchhHHHHHHHHHHhhhhhhhhcc-------Cch
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ-----KFIGEGSRMVRELFVMASLKKLAFAH-------HPL 312 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l~~-----~~~~~~~~~v~~~~~~a~~~~~~~~~-------~~~ 312 (378)
|+.++|+||||+|||||++.|++.+...-+.+++....+ ..++........ ....+..+.... ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g~~~~~~~~~~~~ig~~~~~~~g--~~~~l~~~~~~~~~~~~~~~v~ 78 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSG--TRGPLSRVGLEPPPGKRECRVG 78 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTS--CEEEEEECCCCCCSSSCCEESS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCCEEEcCEecchhHhhhceEEEEEEeccc--ceehhhcccccCCccccccccc
Confidence 467899999999999999999998731003333321100 000000000000 000000010000 011
Q ss_pred hhhhHhhhhhhhhhcccc------cCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHh
Q psy6098 313 LFWSLLTILTNTIVCNFR------EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQ 370 (378)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~------~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~ 370 (378)
.....++.++++.+..++ ...|+||+|||++ |++..|+...+.+.++|..
T Consensus 79 ~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g--------~~~~~~~~~~~~l~~~l~~ 134 (189)
T 2i3b_A 79 QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIG--------KMELFSQLFIQAVRQTLST 134 (189)
T ss_dssp SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCS--------TTTTTCSHHHHHHHHHHHC
T ss_pred eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCC--------ccccccHHHHHHHHHHHhC
Confidence 122246777776664332 4789999999965 5666777777888888763
No 207
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.68 E-value=3.6e-08 Score=92.71 Aligned_cols=55 Identities=27% Similarity=0.277 Sum_probs=45.6
Q ss_pred CcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEecc
Q psy6098 209 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 278 (378)
Q Consensus 209 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~ 278 (378)
.++++.|++++++.+...+.. +.+++|+||||||||+++++++..++.+++.++.
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~ 79 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQF 79 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEec
Confidence 345789999999887766432 3479999999999999999999999988777765
No 208
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.67 E-value=1.8e-09 Score=95.80 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=25.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhc
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 269 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~ 269 (378)
-+|.+.+|+.++|+||||||||||+++|+|.+
T Consensus 16 isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 16 PRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35678899999999999999999999999988
No 209
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.67 E-value=2e-08 Score=106.19 Aligned_cols=103 Identities=16% Similarity=0.084 Sum_probs=60.7
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhh--------cCce-EEEeccC-cccccccchhHHHHHHHHHHhhhhhhhhcc
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHH--------TECT-FIRVSGS-ELVQKFIGEGSRMVRELFVMASLKKLAFAH 309 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~--------~~~~-~i~~~~~-~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~ 309 (378)
+++.+|+.++|+||||+||||++|+++.. .-+. ...+... .+.. ++....
T Consensus 657 l~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~--------------------~ig~~d 716 (934)
T 3thx_A 657 FEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILA--------------------RVGAGD 716 (934)
T ss_dssp EETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEE--------------------ECC---
T ss_pred eecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHH--------------------hcCchh
Confidence 34556788999999999999999999432 2121 1111110 1111 111111
Q ss_pred CchhhhhHhhhhhhhhhccccc-CCCeEEEEecCccccCCCCCCCCCCChHHHHHH-HHHHHhcc
Q psy6098 310 HPLLFWSLLTILTNTIVCNFRE-HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTM-LELLNQLD 372 (378)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~-~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~-~~lL~~l~ 372 (378)
......+.++.++.++..+++. ..|++||||| |++|+|+.....+ +.++..+.
T Consensus 717 ~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDE----------p~~GlD~~~~~~i~~~il~~l~ 771 (934)
T 3thx_A 717 SQLKGVSTFMAEMLETASILRSATKDSLIIIDE----------LGRGTSTYDGFGLAWAISEYIA 771 (934)
T ss_dssp ------CHHHHHHHHHHHHHHHCCTTCEEEEES----------CSCSSCHHHHHHHHHHHHHHHH
T ss_pred hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeC----------CCCCCCHHHHHHHHHHHHHHHH
Confidence 2222344555555555555543 7899999999 9999999766555 67777664
No 210
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.67 E-value=2.4e-08 Score=98.99 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=37.2
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 212 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 212 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
.++|++++++.+...+.. +..++|+||||||||+++++|+..++.
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhh
Confidence 578999999877655432 347999999999999999999998854
No 211
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.66 E-value=3.4e-08 Score=113.93 Aligned_cols=60 Identities=12% Similarity=0.007 Sum_probs=48.3
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDE 74 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~ 74 (378)
++.||||||||.+++++|+.+|.+++.+++++-+.. +.+..+|.-|.+. |..++|||++.
T Consensus 649 ~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~----Gaw~~~DE~nr 708 (2695)
T 4akg_A 649 CFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQI----GAWGCFDEFNR 708 (2695)
T ss_dssp EEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHH----TCEEEEETTTS
T ss_pred cccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhc----CCEeeehhhhh
Confidence 456999999999999999999999999999877652 3456777766542 45899999654
No 212
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.66 E-value=5.8e-09 Score=102.25 Aligned_cols=70 Identities=13% Similarity=0.091 Sum_probs=52.9
Q ss_pred CCCCCCCChhHHHHHHHhhcc-----CceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT-----ECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIK 77 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~-----~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~ 77 (378)
++.||||||||++|+++|+++ +.+++.++++++...+++.-.......|..+....++ ||||||++.+..
T Consensus 134 ll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---vL~IDEi~~l~~ 208 (440)
T 2z4s_A 134 FIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVD---ILLIDDVQFLIG 208 (440)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCS---EEEEECGGGGSS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCC---EEEEeCcccccC
Confidence 467999999999999999998 8899999999987766654443333344443322445 999999999874
No 213
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.64 E-value=3.1e-08 Score=87.76 Aligned_cols=40 Identities=28% Similarity=0.393 Sum_probs=32.8
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcCc---------eEEEeccCc
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTEC---------TFIRVSGSE 280 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~---------~~i~~~~~~ 280 (378)
++.+|+.++|+||||||||||++.|++...+ ..+.+++.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 7889999999999999999999999996543 256666543
No 214
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.62 E-value=2.7e-08 Score=93.23 Aligned_cols=65 Identities=25% Similarity=0.266 Sum_probs=50.0
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCC--CCceEEEeehhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSS--RGTEFFTMDVDEAI 76 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~--~~~ilf~DEid~~~ 76 (378)
++.||||||||++|+++|++++..|+++++++.- ...+++.+..+....|- ...|+||||+|.+.
T Consensus 52 L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 52 LHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG 118 (324)
T ss_dssp EECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG
T ss_pred EeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccC
Confidence 4567799999999999999999999999987732 44666666554443331 34699999999885
No 215
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.61 E-value=7.7e-09 Score=94.20 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=44.6
Q ss_pred CCCCCCCChhHHHHHHHhhccC---ceEEEeccccccccc-----cchhH-------HHHHHHHHHHHhcCCCCCceEEE
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTE---CTFIRVSGSELVQKF-----IGEGS-------RMVRELFVMARCKGSSRGTEFFT 69 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~---~~~~~v~~~~~~~~~-----~Gese-------~~~~~~f~~a~~~~~~~~~ilf~ 69 (378)
++.||||||||++|++++..+. .+|+.|+++++.... .|... .....+|..| .+++|||
T Consensus 33 ll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a------~~~~l~l 106 (265)
T 2bjv_A 33 LIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA------DGGTLFL 106 (265)
T ss_dssp EEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHT------TTSEEEE
T ss_pred EEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhc------CCcEEEE
Confidence 4679999999999999999885 689999998874321 11100 0001122222 2569999
Q ss_pred eehhhhh
Q psy6098 70 MDVDEAI 76 (378)
Q Consensus 70 DEid~~~ 76 (378)
||++.+.
T Consensus 107 DEi~~l~ 113 (265)
T 2bjv_A 107 DELATAP 113 (265)
T ss_dssp ESGGGSC
T ss_pred echHhcC
Confidence 9999885
No 216
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.60 E-value=1e-08 Score=95.97 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=46.9
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAI 76 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~ 76 (378)
++.||||||||++|+++|.+++.+|+.++++.+.. ...+...|..+ -+.+++||+||++.+.
T Consensus 42 ll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~----~~~~~~l~lDEi~~l~ 103 (324)
T 1hqc_A 42 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANS----LEEGDILFIDEIHRLS 103 (324)
T ss_dssp EEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTT----CCTTCEEEETTTTSCC
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHh----ccCCCEEEEECCcccc
Confidence 57899999999999999999999999999987743 22333333221 1335699999999875
No 217
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.60 E-value=2.9e-09 Score=93.49 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=25.9
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhhcC
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 270 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~ 270 (378)
..+.+|+.++|+||||||||||+|+|+|.+.
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3688899999999999999999999999985
No 218
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.60 E-value=1.9e-08 Score=93.34 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=54.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccC---cccccccc--------hhHHHHHHHHHHhhhhhhh
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGS---ELVQKFIG--------EGSRMVRELFVMASLKKLA 306 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~---~l~~~~~~--------~~~~~v~~~~~~a~~~~~~ 306 (378)
-++.+++|+.++|+||||+|||||+++|+|++ ...|..... .+....+. .....+.+.+... +
T Consensus 119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~~~~~~~i~~~----L- 192 (305)
T 2v9p_A 119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTY----L- 192 (305)
T ss_dssp HHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGGTTSGGGGGGGTTCSCEEEEEECHHHHHHHHHT----T-
T ss_pred ceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEecCccccccccHHHHhhccCccccHHHHHHHHHH----h-
Confidence 36789999999999999999999999999998 334433221 11111100 0011222222221 1
Q ss_pred hccCchhhhhHhhhhhhhhhccccc--CCCeEEE
Q psy6098 307 FAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIF 338 (378)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~ 338 (378)
.. ......||+|++|| +|+ ..|+||+
T Consensus 193 -~~--gldg~~LSgGqkQR---ARAll~~p~iLl 220 (305)
T 2v9p_A 193 -RN--ALDGYPVSIDRKHK---AAVQIKAPPLLV 220 (305)
T ss_dssp -TG--GGGTCCEECCCSSC---CCCEECCCCEEE
T ss_pred -Hc--cCCccCcCHHHHHH---HHHHhCCCCEEE
Confidence 00 11156799999999 454 8888888
No 219
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.57 E-value=3.2e-08 Score=93.18 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=55.3
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhh
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWS 316 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~ 316 (378)
++.+.+++.++|.||||+|||||+++|++.+.+. .|.+++....... ... ..+.. +.
T Consensus 165 ~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~--~~~------------~~i~~-------~~ 223 (330)
T 2pt7_A 165 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK--HHK------------NYTQL-------FF 223 (330)
T ss_dssp HHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS--SCS------------SEEEE-------EC
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc--cch------------hEEEE-------Ee
Confidence 4566778899999999999999999999999876 7888765321100 000 00000 00
Q ss_pred Hhhhhhhhhhccccc--CCCeEEEEec
Q psy6098 317 LLTILTNTIVCNFRE--HAPSIIFMDE 341 (378)
Q Consensus 317 ~~~~~~~~~~~~~~~--~~p~vl~lDE 341 (378)
.++++|+..++++ ..|++|++||
T Consensus 224 --ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 224 --GGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp --BTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred --CCChhHHHHHHHHhhhCCCEEEEcC
Confidence 0567777777666 7999999999
No 220
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.56 E-value=8e-09 Score=96.26 Aligned_cols=65 Identities=23% Similarity=0.312 Sum_probs=45.9
Q ss_pred CCCCCCCChhHHHHHHHhhcc---CceEEEecccccccc-------------ccchhHHHHHHHHHHHHhcCCCCCceEE
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT---ECTFIRVSGSELVQK-------------FIGEGSRMVRELFVMARCKGSSRGTEFF 68 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~---~~~~~~v~~~~~~~~-------------~~Gese~~~~~~f~~a~~~~~~~~~ilf 68 (378)
++.||||||||++||+++..+ +.+|+.|+++.+... |.|... .....|+.|. +++||
T Consensus 29 Li~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a~------~g~L~ 101 (304)
T 1ojl_A 29 LIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEAD------GGTLF 101 (304)
T ss_dssp EEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHHT------TSEEE
T ss_pred EEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhcC------CCEEE
Confidence 567999999999999999865 578999999876532 112111 1223455553 46999
Q ss_pred Eeehhhhh
Q psy6098 69 TMDVDEAI 76 (378)
Q Consensus 69 ~DEid~~~ 76 (378)
+|||+.+.
T Consensus 102 LDEi~~l~ 109 (304)
T 1ojl_A 102 LDEIGDIS 109 (304)
T ss_dssp EESCTTCC
T ss_pred EeccccCC
Confidence 99999985
No 221
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.56 E-value=3.4e-08 Score=87.46 Aligned_cols=30 Identities=37% Similarity=0.453 Sum_probs=27.2
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcC
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTE 270 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~ 270 (378)
++.+|+.++|+||||+|||||++.+++...
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 688899999999999999999999997653
No 222
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=98.56 E-value=6.4e-08 Score=75.47 Aligned_cols=98 Identities=30% Similarity=0.458 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccceeeccCCCceeeecCccccccccCccchhhcccchhh
Q psy6098 105 RRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYT 184 (378)
Q Consensus 105 ~~l~~~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~~i~~~~~~~~~~~~l~~~i~~~~l~~~~~~~~~~~~~~ 184 (378)
..+.+..+.+...+..++++++.++.+|.+.+++.+.+++++++++...+..+++.+.+.++.+.+.||+++++.+..++
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~ 89 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLA 89 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECTTSCEEEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEecCCEEEEEeCCCCEEEEEcccccCHHHCCCCCEEEECCcceE
Confidence 34455566777888899999999999999999999999999999998888889999999999999999999999999999
Q ss_pred hhhhcCCCCchhhhhhcc
Q psy6098 185 LHKILPNKVDPLVSLMMV 202 (378)
Q Consensus 185 l~~i~~~~~~~~~~~~~~ 202 (378)
+..++|...||.+..+.+
T Consensus 90 Iv~iLp~e~Dp~V~~M~v 107 (109)
T 2wg5_A 90 IVNVLPTSKDPMVYGFEV 107 (109)
T ss_dssp EEEEEC------------
T ss_pred eEEeCCCCcCccchheEe
Confidence 999999999998776644
No 223
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.56 E-value=3.1e-08 Score=90.98 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=26.7
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhc
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 269 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~ 269 (378)
++.+|+.++|+||||+|||||++.+++.+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 78899999999999999999999999754
No 224
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.55 E-value=2.7e-08 Score=89.68 Aligned_cols=107 Identities=9% Similarity=0.065 Sum_probs=58.1
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--------EEEeccCcccccccchhHHHHHHHHHH-------h--
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--------FIRVSGSELVQKFIGEGSRMVRELFVM-------A-- 300 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--------~i~~~~~~l~~~~~~~~~~~v~~~~~~-------a-- 300 (378)
-+|.+.++..++|.|||||||||+++.|++.++.. ...+....+.... .. ...++..... +
T Consensus 18 isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l-~~-~~~~~~~~~~~~~~~~~~~~ 95 (245)
T 2jeo_A 18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVL-TA-EQKAKALKGQYNFDHPDAFD 95 (245)
T ss_dssp -----CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCC-CH-HHHHHHHTTCCCTTSGGGBC
T ss_pred eeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCcccc-CH-hHhhhhhccCCCCCCccccc
Confidence 36778889999999999999999999999987643 1122222222110 00 0000000000 0
Q ss_pred ---hhhhhh-hccCchhhhhHhhhhhhhhhcccc-cCCCeEEEEecCcccc
Q psy6098 301 ---SLKKLA-FAHHPLLFWSLLTILTNTIVCNFR-EHAPSIIFMDEIDSIG 346 (378)
Q Consensus 301 ---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~vl~lDEid~~~ 346 (378)
....+. +.......+..+|.++++++.... ..+|.++++||.|.+.
T Consensus 96 ~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 96 NDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTT
T ss_pred HHHHHHHHHHHHCCCCeecccccccccCccCceEEecCCCEEEEeCccccc
Confidence 001111 123334455678888888876521 2678899999977653
No 225
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.54 E-value=1.9e-08 Score=100.88 Aligned_cols=132 Identities=21% Similarity=0.192 Sum_probs=73.5
Q ss_pred hc-CCCCCcceeEeCCCCCchHHHHHH--HhhhcCce--EEEeccCcccccccchhHHHHHHHHHHhh----hhhhhhcc
Q psy6098 239 AL-GIAQPKGVLLYGPPGTGKTLLARA--VAHHTECT--FIRVSGSELVQKFIGEGSRMVRELFVMAS----LKKLAFAH 309 (378)
Q Consensus 239 ~~-~~~~~~~~ll~Gp~G~GKTtl~~~--ia~~~~~~--~i~~~~~~l~~~~~~~~~~~v~~~~~~a~----~~~~~~~~ 309 (378)
++ ++.+|+.++|+||||||||||+++ ++|...+. .+.+++.+...... ...+.+.-.|+... +..+....
T Consensus 32 ~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~-~~~~~~g~~~q~~~~~~~l~~~~~~~ 110 (525)
T 1tf7_A 32 SHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDII-KNARSFGWDLAKLVDEGKLFILDASP 110 (525)
T ss_dssp TTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHH-HHHGGGTCCHHHHHHTTSEEEEECCC
T ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHH-HHHHHcCCChHHhhccCcEEEEecCc
Confidence 56 788999999999999999999999 67887643 78887765311100 00000000111110 00000000
Q ss_pred ----CchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 310 ----HPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 310 ----~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
......-.+.....+....++...|++|+|||+-++.+ ..++|+..++.+.++++.+...+.
T Consensus 111 ~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~-----~~~lD~~~~~~l~~ll~~l~~~g~ 176 (525)
T 1tf7_A 111 DPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQ-----QYDASSVVRRELFRLVARLKQIGA 176 (525)
T ss_dssp CSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTST-----TTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHH-----hcCCHHHHHHHHHHHHHHHHHCCC
Confidence 00000111222223333333447899999999554332 245788889999999988865443
No 226
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.54 E-value=2.3e-08 Score=92.93 Aligned_cols=67 Identities=24% Similarity=0.207 Sum_probs=46.4
Q ss_pred CCCCCCCChhHHHHHHHhhcc---CceEEEecccccccc-----cc-------chhHHHHHHHHHHHHhcCCCCCceEEE
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT---ECTFIRVSGSELVQK-----FI-------GEGSRMVRELFVMARCKGSSRGTEFFT 69 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~---~~~~~~v~~~~~~~~-----~~-------Gese~~~~~~f~~a~~~~~~~~~ilf~ 69 (378)
++.||||||||++|+++|..+ +.+|+.++++++... +. |..+. ..|..+...+| ++|+||
T Consensus 51 ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~---~~~~~~~~~~~--~~vl~l 125 (311)
T 4fcw_A 51 LFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG---GQLTEAVRRRP--YSVILF 125 (311)
T ss_dssp EEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTC---CHHHHHHHHCS--SEEEEE
T ss_pred EEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCcccccccc---chHHHHHHhCC--CeEEEE
Confidence 578999999999999999988 457999998876532 22 22111 22333333333 469999
Q ss_pred eehhhhh
Q psy6098 70 MDVDEAI 76 (378)
Q Consensus 70 DEid~~~ 76 (378)
||+|.+-
T Consensus 126 DEi~~l~ 132 (311)
T 4fcw_A 126 DAIEKAH 132 (311)
T ss_dssp ETGGGSC
T ss_pred eChhhcC
Confidence 9999874
No 227
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.54 E-value=3.7e-08 Score=94.04 Aligned_cols=72 Identities=19% Similarity=0.023 Sum_probs=50.3
Q ss_pred CCCCCCCChhHHHHHHHhhcc---------CceEEEecccccccc----------------ccchhHHH-HHHHHHHHHh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT---------ECTFIRVSGSELVQK----------------FIGEGSRM-VRELFVMARC 58 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~---------~~~~~~v~~~~~~~~----------------~~Gese~~-~~~~f~~a~~ 58 (378)
++.||||||||++|+++++++ +..|+.+++.+..+. +.|.+... +..+++.+..
T Consensus 48 ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 127 (387)
T 2v1u_A 48 LLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSR 127 (387)
T ss_dssp EECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 578999999999999999998 889999998764321 12333333 4555554432
Q ss_pred cCCCCCceEEEeehhhhhhc
Q psy6098 59 KGSSRGTEFFTMDVDEAIKS 78 (378)
Q Consensus 59 ~~~~~~~ilf~DEid~~~~~ 78 (378)
.. ...+|||||++.+...
T Consensus 128 ~~--~~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 128 LR--GIYIIVLDEIDFLPKR 145 (387)
T ss_dssp SC--SEEEEEEETTTHHHHS
T ss_pred cC--CeEEEEEccHhhhccc
Confidence 21 1249999999998643
No 228
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.52 E-value=4.3e-07 Score=79.69 Aligned_cols=39 Identities=28% Similarity=0.287 Sum_probs=31.7
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccC
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 279 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~ 279 (378)
++.+|+.++|+||||+|||||++.+++..+...+.++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 688999999999999999999999999333345556544
No 229
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.51 E-value=6.8e-08 Score=91.71 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=35.5
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcC---------ceEEEeccCcc
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---------CTFIRVSGSEL 281 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~---------~~~i~~~~~~l 281 (378)
..++.+|+.++|+||||+|||||++.+++... ...+.+++.+.
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 35899999999999999999999999999872 22477777654
No 230
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.51 E-value=1.5e-07 Score=89.05 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=43.3
Q ss_pred hhhhHhhhhhhhhhccc------cc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCC
Q psy6098 313 LFWSLLTILTNTIVCNF------RE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 375 (378)
Q Consensus 313 ~~~~~~~~~~~~~~~~~------~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~ 375 (378)
..+..+|+|++|++.++ +. ..|++|+||| |++++|+..+..+.++|.++...+
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDE----------p~~~LD~~~~~~l~~~l~~~~~~~ 304 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDE----------PTPYLDEERRRKLITIMERYLKKI 304 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEEC----------CCTTCCHHHHHHHHHHHHHTGGGS
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHHhcC
Confidence 45678999999965433 33 6899999999 999999999999999998875444
No 231
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.49 E-value=1.2e-07 Score=90.19 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=26.6
Q ss_pred CCCCcceeEeCCCCCchHHHHHHHhhhcCce
Q psy6098 242 IAQPKGVLLYGPPGTGKTLLARAVAHHTECT 272 (378)
Q Consensus 242 ~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~ 272 (378)
..++..+++.|||||||||+++++++.+.++
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 3556689999999999999999999988653
No 232
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.49 E-value=2.3e-08 Score=100.19 Aligned_cols=118 Identities=14% Similarity=0.066 Sum_probs=75.8
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhhcCce---EEEeccCcccccccchhHHHHHHHHHHhhh-----hhhhhccCc
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT---FIRVSGSELVQKFIGEGSRMVRELFVMASL-----KKLAFAHHP 311 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~---~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~-----~~~~~~~~~ 311 (378)
.++.+|+.++|.||||+|||||++.+++...+. .+.+...+- ...+......... .........
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~--------~~~l~~~~~~~g~~~~~~~~~g~~~~~ 347 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES--------RAQLLRNAYSWGMDFEEMERQNLLKIV 347 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC--------HHHHHHHHHTTSCCHHHHHHTTSEEEC
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC--------HHHHHHHHHHcCCCHHHHHhCCCEEEE
Confidence 388999999999999999999999999876532 334333221 1111111110000 011112223
Q ss_pred hhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChH-----HHHHHHHHHHhccCCCC
Q psy6098 312 LLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSE-----VQRTMLELLNQLDGFEA 376 (378)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~-----~~~~~~~lL~~l~~~~~ 376 (378)
...+..+|.++.|++.+++. ..|.+|+||= ++++|.. .+..+.+++..+...+.
T Consensus 348 ~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp-----------~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~ 408 (525)
T 1tf7_A 348 CAYPESAGLEDHLQIIKSEINDFKPARIAIDS-----------LSALARGVSNNAFRQFVIGVTGYAKQEEI 408 (525)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHTTCCSEEEEEC-----------HHHHTSSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred EeccccCCHHHHHHHHHHHHHhhCCCEEEEcC-----------hHHHHhhCChHHHHHHHHHHHHHHHhCCC
Confidence 33456789999999988876 8999999994 3344444 77888888888765554
No 233
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.48 E-value=2.6e-07 Score=80.32 Aligned_cols=34 Identities=35% Similarity=0.428 Sum_probs=26.9
Q ss_pred cceeEeCCCCCchHHHHHHHhhhcC---ceEEEeccC
Q psy6098 246 KGVLLYGPPGTGKTLLARAVAHHTE---CTFIRVSGS 279 (378)
Q Consensus 246 ~~~ll~Gp~G~GKTtl~~~ia~~~~---~~~i~~~~~ 279 (378)
..++|+||||||||+++++++..+. ..++.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 6899999999999999999998763 335445443
No 234
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.47 E-value=3.4e-07 Score=81.69 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=32.8
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhh--cC-------ceEEEeccCc
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHH--TE-------CTFIRVSGSE 280 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~--~~-------~~~i~~~~~~ 280 (378)
++.+|+.++|+||||+|||||++.+++. +. ...+.+++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 6889999999999999999999999994 42 3466776654
No 235
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.47 E-value=9.3e-08 Score=88.76 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=47.1
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcCc--eEEEeccCcccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhHh
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTEC--TFIRVSGSELVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSLL 318 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~--~~i~~~~~~l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~ 318 (378)
++.++..++|+||||||||+|+..++...+. -++.+...+....+....+..+..+++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l------------------ 180 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAM------------------ 180 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHH------------------
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHH------------------
Confidence 5677778899999999999999999876322 26666323333322222223322232222
Q ss_pred hhhhhhhhcccccCCCeEEEEecCccccCCC
Q psy6098 319 TILTNTIVCNFREHAPSIIFMDEIDSIGSSR 349 (378)
Q Consensus 319 ~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r 349 (378)
.... +|||||++.+...+
T Consensus 181 -----------~~~~--LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 181 -----------LQHR--VIVIDSLKNVIGAA 198 (331)
T ss_dssp -----------HHCS--EEEEECCTTTC---
T ss_pred -----------hhCC--EEEEeccccccccc
Confidence 1223 99999999997654
No 236
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.46 E-value=6.2e-07 Score=83.40 Aligned_cols=102 Identities=11% Similarity=0.193 Sum_probs=64.5
Q ss_pred CcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhc------CceEEEeccCcccccccch
Q psy6098 215 GLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------ECTFIRVSGSELVQKFIGE 288 (378)
Q Consensus 215 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~------~~~~i~~~~~~l~~~~~~~ 288 (378)
|++++.+.++..+... . ...++|+||||+|||++++++|..+ .++++.+++.+- ..
T Consensus 1 g~~~~~~~L~~~i~~~------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHCC------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 5677788887776541 1 2479999999999999999999753 456777765420 12
Q ss_pred hHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHH
Q psy6098 289 GSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELL 368 (378)
Q Consensus 289 ~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL 368 (378)
+...+++++..+...- ......|+|+||+|.+. ......+.+.|
T Consensus 63 ~id~ir~li~~~~~~p-------------------------~~~~~kvviIdead~lt-----------~~a~naLLk~L 106 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSP-------------------------ELYTRKYVIVHDCERMT-----------QQAANAFLKAL 106 (305)
T ss_dssp CHHHHHHHHHHHTSCC-------------------------SSSSSEEEEETTGGGBC-----------HHHHHHTHHHH
T ss_pred CHHHHHHHHHHHhhcc-------------------------ccCCceEEEeccHHHhC-----------HHHHHHHHHHH
Confidence 3445677666552100 01356899999999863 34455566666
Q ss_pred Hh
Q psy6098 369 NQ 370 (378)
Q Consensus 369 ~~ 370 (378)
++
T Consensus 107 Ee 108 (305)
T 2gno_A 107 EE 108 (305)
T ss_dssp HS
T ss_pred hC
Confidence 54
No 237
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.46 E-value=2.1e-08 Score=87.94 Aligned_cols=30 Identities=30% Similarity=0.325 Sum_probs=26.1
Q ss_pred CCCCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 242 IAQPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 242 ~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
..++..++|.|||||||||+++.|++.+++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457788999999999999999999999884
No 238
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.43 E-value=1.1e-07 Score=89.70 Aligned_cols=62 Identities=23% Similarity=0.217 Sum_probs=45.8
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIK 77 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~ 77 (378)
++.||||||||++|+++|+++++.+..++++.+.. ...+..++... .. ..|+|+||++.+.+
T Consensus 55 ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~~~--~~---~~v~~iDE~~~l~~ 116 (334)
T 1in4_A 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTSL--ER---GDVLFIDEIHRLNK 116 (334)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHHHC--CT---TCEEEEETGGGCCH
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHHHc--cC---CCEEEEcchhhcCH
Confidence 57899999999999999999999988888776542 12344444321 12 34999999998853
No 239
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.42 E-value=9.6e-08 Score=91.35 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=48.4
Q ss_pred CCCCCCCChhHHHHHHHhhcc-----------CceEEEecccccc-----------cc-------ccchh-HHHHHHHHH
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT-----------ECTFIRVSGSELV-----------QK-------FIGEG-SRMVRELFV 54 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~-----------~~~~~~v~~~~~~-----------~~-------~~Ges-e~~~~~~f~ 54 (378)
++.||||||||++|+++++++ +..|+.+++++.. .. +.|.+ ...+..+++
T Consensus 49 ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 128 (384)
T 2qby_B 49 LFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKN 128 (384)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence 568999999999999999988 8999999976543 11 12222 233444554
Q ss_pred HHHhcCCCCCceEEEeehhhhhhc
Q psy6098 55 MARCKGSSRGTEFFTMDVDEAIKS 78 (378)
Q Consensus 55 ~a~~~~~~~~~ilf~DEid~~~~~ 78 (378)
.++. . +.+|||||++.+...
T Consensus 129 ~l~~-~---~~vlilDEi~~l~~~ 148 (384)
T 2qby_B 129 GTRN-I---RAIIYLDEVDTLVKR 148 (384)
T ss_dssp HHSS-S---CEEEEEETTHHHHHS
T ss_pred Hhcc-C---CCEEEEECHHHhccC
Confidence 4331 1 229999999998753
No 240
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.41 E-value=3.3e-08 Score=84.52 Aligned_cols=66 Identities=14% Similarity=-0.037 Sum_probs=43.8
Q ss_pred CCCCCCCChhHHHHHHHhhcc----CceEEEeccccccccccchhHHH-HHHHHHHHHhcCCCCCceEEEeehhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT----ECTFIRVSGSELVQKFIGEGSRM-VRELFVMARCKGSSRGTEFFTMDVDEA 75 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~----~~~~~~v~~~~~~~~~~Gese~~-~~~~f~~a~~~~~~~~~ilf~DEid~~ 75 (378)
++.||||||||++++++++.+ |..++.++.++++..+....... ...+.+.. ..|. +||+||+++.
T Consensus 42 ~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---llilDE~~~~ 112 (180)
T 3ec2_A 42 TFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSP---VLVLDDLGSE 112 (180)
T ss_dssp EECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCS---EEEEETCSSS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCC---EEEEeCCCCC
Confidence 478999999999999999887 56777788888776543211110 00122222 2445 9999999754
No 241
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.41 E-value=9.9e-08 Score=80.02 Aligned_cols=44 Identities=27% Similarity=0.268 Sum_probs=37.2
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccc
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELV 282 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~ 282 (378)
-++.+.+|+.++|.||||+|||||+|+|+|.+ +. .|.+.+.++.
T Consensus 26 vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 26 LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLV 71 (158)
T ss_dssp HHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCE
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeee
Confidence 47789999999999999999999999999998 54 5666665553
No 242
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.41 E-value=6e-08 Score=84.41 Aligned_cols=67 Identities=16% Similarity=0.105 Sum_probs=44.6
Q ss_pred CCCCCCCChhHHHHHHHhhcc---CceEEEeccccccccccchh-HHHHHHHHHHHHhcCCCCCceEEEeehhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEG-SRMVRELFVMARCKGSSRGTEFFTMDVDEAI 76 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~---~~~~~~v~~~~~~~~~~Ges-e~~~~~~f~~a~~~~~~~~~ilf~DEid~~~ 76 (378)
++.||||||||++|++++..+ +.+++.++.+++...+.... ...+..+++.... +. +|||||++...
T Consensus 58 ~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~lilDei~~~~ 128 (202)
T 2w58_A 58 YLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VP---VLMLDDLGAEA 128 (202)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SS---EEEEEEECCC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CC---EEEEcCCCCCc
Confidence 467999999999999999887 67888888888765432210 0012233333332 23 89999996643
No 243
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.41 E-value=2.5e-07 Score=85.62 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=29.8
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
++++.+|+.++|.||||+|||||++.|++.+.+
T Consensus 29 ~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 29 TLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp HCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred hcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999999998653
No 244
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.40 E-value=3.8e-08 Score=97.60 Aligned_cols=71 Identities=13% Similarity=0.021 Sum_probs=40.6
Q ss_pred CCCCCCCCCChhHHHHHHHhhccCc--eEEEecc-----ccccccccchhHHHHHHHHHHHHhcCCC-CCceEEEeehhh
Q psy6098 3 KPLHPTWIVSGKTLLARAVAHHTEC--TFIRVSG-----SELVQKFIGEGSRMVRELFVMARCKGSS-RGTEFFTMDVDE 74 (378)
Q Consensus 3 ~~~~~~pPGtGKt~~a~~~a~~~~~--~~~~v~~-----~~~~~~~~Gese~~~~~~f~~a~~~~~~-~~~ilf~DEid~ 74 (378)
+-++.||||||||++|+++|..++. .|..++. +++++.+.+.....- ..|..+.. .+. .++|+|||||+.
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~-g~~~~~~~-g~l~~~~IL~IDEI~r 120 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDE-GRYERLTS-GYLPEAEIVFLDEIWK 120 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCT-TSGGGCSEEEEESGGG
T ss_pred eeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhc-hhHHhhhc-cCCCcceeeeHHhHhh
Confidence 3467899999999999999998854 4444333 566665555433221 22322221 110 234899999975
Q ss_pred h
Q psy6098 75 A 75 (378)
Q Consensus 75 ~ 75 (378)
+
T Consensus 121 ~ 121 (500)
T 3nbx_X 121 A 121 (500)
T ss_dssp C
T ss_pred h
Confidence 4
No 245
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.37 E-value=1e-07 Score=96.79 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=38.5
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEE
Q psy6098 212 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 275 (378)
Q Consensus 212 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~ 275 (378)
.+.|++++++.+.-.+.. ..+.......+....+++|+||||||||+++++++..++.....
T Consensus 296 ~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~ 357 (595)
T 3f9v_A 296 SIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYT 357 (595)
T ss_dssp TTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred hhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceec
Confidence 477888777665322211 00000011222333479999999999999999999998766433
No 246
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.37 E-value=6.8e-08 Score=90.82 Aligned_cols=69 Identities=19% Similarity=0.163 Sum_probs=44.1
Q ss_pred CCCCCCCCCChhHHHHHHHhhccCceEEEeccc------cccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhh
Q psy6098 3 KPLHPTWIVSGKTLLARAVAHHTECTFIRVSGS------ELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAI 76 (378)
Q Consensus 3 ~~~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~------~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~ 76 (378)
+-++.||||||||++|+++|..++.+|+.+++. ++++...-.... .-| .....+-.++|+|+||++.+-
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~---~~~--~~~~g~l~~~vl~iDEi~~~~ 122 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHK---GNF--EVKKGPVFSNFILADEVNRSP 122 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTT---TEE--EEEECTTCSSEEEEETGGGSC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCC---Cce--EeccCcccccEEEEEccccCC
Confidence 346789999999999999999999999988873 333332211000 000 001122123699999999863
No 247
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.36 E-value=3.6e-07 Score=87.41 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=30.5
Q ss_pred hhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 237 FDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 237 ~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
+..+.+.+++.++|+||||+||||++++|++.+.+
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 44556788999999999999999999999998764
No 248
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.36 E-value=3e-07 Score=85.38 Aligned_cols=69 Identities=14% Similarity=0.060 Sum_probs=51.2
Q ss_pred CCCCCCCChhHHHHHHHhhccCc--eEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTEC--TFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKS 78 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~--~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~ 78 (378)
++.||||||||++|.++|.+.+. .|+.+..++.++.+..+.+..++.+++..... + ++||||+.++...
T Consensus 127 LI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~----~-LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 127 IVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH----R-VIVIDSLKNVIGA 197 (331)
T ss_dssp EEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC----S-EEEEECCTTTC--
T ss_pred EEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC----C-EEEEecccccccc
Confidence 57899999999999999987543 45555336666666677777777787777642 2 8999999998654
No 249
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.35 E-value=1.4e-07 Score=83.72 Aligned_cols=60 Identities=15% Similarity=-0.028 Sum_probs=44.6
Q ss_pred CCCCCCCChhHHHHHHHhhccC---ceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTE---CTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIK 77 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~---~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~ 77 (378)
++.||||||||++|+++|.++. ..++.++.+++...+.. +++.. ..+ .+|||||++.+..
T Consensus 56 ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~~~---~vliiDe~~~~~~ 118 (242)
T 3bos_A 56 YLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA--------LLEGL--EQF---DLICIDDVDAVAG 118 (242)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG--------GGTTG--GGS---SEEEEETGGGGTT
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--------HHHhc--cCC---CEEEEeccccccC
Confidence 5789999999999999998875 67888999888765421 11111 123 4999999998854
No 250
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.34 E-value=1.9e-07 Score=88.92 Aligned_cols=71 Identities=17% Similarity=0.219 Sum_probs=50.0
Q ss_pred CCCCCCCChhHHHHHHHhhcc------CceEEEeccccccc------c----------ccchhH-HHHHHHHHHHHhcC-
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT------ECTFIRVSGSELVQ------K----------FIGEGS-RMVRELFVMARCKG- 60 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~------~~~~~~v~~~~~~~------~----------~~Gese-~~~~~~f~~a~~~~- 60 (378)
++.||||||||++++++++.+ +..++.+++.+..+ . ..|.+. ...+.+++......
T Consensus 49 li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 128 (386)
T 2qby_A 49 FIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGS 128 (386)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCC
Confidence 467999999999999999988 88999999764321 1 123223 33555555554332
Q ss_pred CCCCceEEEeehhhhhhc
Q psy6098 61 SSRGTEFFTMDVDEAIKS 78 (378)
Q Consensus 61 ~~~~~ilf~DEid~~~~~ 78 (378)
|+ +|||||++.+...
T Consensus 129 ~~---vlilDE~~~l~~~ 143 (386)
T 2qby_A 129 QV---VIVLDEIDAFVKK 143 (386)
T ss_dssp CE---EEEEETHHHHHHS
T ss_pred eE---EEEEcChhhhhcc
Confidence 44 9999999999754
No 251
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.34 E-value=3.9e-07 Score=79.52 Aligned_cols=66 Identities=23% Similarity=0.142 Sum_probs=44.9
Q ss_pred CCCCCCCChhHHHHHHHhhcc-----CceEEEeccccccccccchhHHHHHHHHHHHHhc---CCCCCceEEEeehhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT-----ECTFIRVSGSELVQKFIGEGSRMVRELFVMARCK---GSSRGTEFFTMDVDEAI 76 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~-----~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~---~~~~~~ilf~DEid~~~ 76 (378)
++.||||||||++|+++++++ ...++.+++++..+. ..++..+...... ......+|||||++.+.
T Consensus 42 ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 115 (226)
T 2chg_A 42 LFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT 115 (226)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC
T ss_pred EEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcC
Confidence 578999999999999999886 457888887765432 2233333332221 11335699999999875
No 252
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.33 E-value=1.5e-07 Score=98.33 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=24.3
Q ss_pred CCCcceeEeCCCCCchHHHHHHHhhhc
Q psy6098 243 AQPKGVLLYGPPGTGKTLLARAVAHHT 269 (378)
Q Consensus 243 ~~~~~~ll~Gp~G~GKTtl~~~ia~~~ 269 (378)
.+|+.++|+||||+||||++|+|++..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 567889999999999999999999863
No 253
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.33 E-value=1.6e-07 Score=77.98 Aligned_cols=53 Identities=9% Similarity=-0.076 Sum_probs=42.2
Q ss_pred CCCCCCChhHHHHHHHhhcc---CceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhh
Q psy6098 6 HPTWIVSGKTLLARAVAHHT---ECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAI 76 (378)
Q Consensus 6 ~~~pPGtGKt~~a~~~a~~~---~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~ 76 (378)
++||||||||+|+++++..+ |..++.++..++... +....|. +|++||++.+.
T Consensus 41 l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~---lLilDE~~~~~ 96 (149)
T 2kjq_A 41 VWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAE---YLAVDQVEKLG 96 (149)
T ss_dssp EESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCS---EEEEESTTCCC
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCC---EEEEeCccccC
Confidence 67999999999999999987 777888999888764 1112355 99999998754
No 254
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.30 E-value=3.4e-07 Score=98.03 Aligned_cols=101 Identities=17% Similarity=0.205 Sum_probs=56.0
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcCc----e-EEEeccCc--ccccccchhHHHHHHHHHHhhhhhhhhccCchhhhhH
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTEC----T-FIRVSGSE--LVQKFIGEGSRMVRELFVMASLKKLAFAHHPLLFWSL 317 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~~----~-~i~~~~~~--l~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~ 317 (378)
|+.++|+||||+||||++|++ |++.. . +|--.... +.... +.+++.........+.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq~~~~l~v~d~I----------------~~rig~~d~~~~~~st 851 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPAEVCRLTPIDRV----------------FTRLGASDRIMSGEST 851 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEESSEEEECCCSBE----------------EEECC---------CH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEeccCcCCCCHHHHH----------------HHHcCCHHHHhhchhh
Confidence 689999999999999999999 65431 0 11110000 00000 0001111111112233
Q ss_pred hhhhhhhhhcccc--cCCCeEEEEecCccccCCCCCCCCCCChHH-HHHHHHHHHhccC
Q psy6098 318 LTILTNTIVCNFR--EHAPSIIFMDEIDSIGSSRIESGSGGDSEV-QRTMLELLNQLDG 373 (378)
Q Consensus 318 ~~~~~~~~~~~~~--~~~p~vl~lDEid~~~~~r~~~~~~~d~~~-~~~~~~lL~~l~~ 373 (378)
++..+.+ +..++ ...|++|+||| |++|+|+.. ...++.+|..+..
T Consensus 852 f~~em~~-~a~al~la~~~sLlLLDE----------p~~Gtd~~dg~~~~~~il~~L~~ 899 (1022)
T 2o8b_B 852 FFVELSE-TASILMHATAHSLVLVDE----------LGRGTATFDGTAIANAVVKELAE 899 (1022)
T ss_dssp HHHHHHH-HHHHHHHCCTTCEEEEEC----------TTTTSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHH-HHHHHHhCCCCcEEEEEC----------CCCCCChHHHHHHHHHHHHHHHh
Confidence 4444433 33333 37899999999 999999876 4556788877753
No 255
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.29 E-value=2e-06 Score=81.43 Aligned_cols=115 Identities=11% Similarity=0.124 Sum_probs=68.8
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCc---cccc--ccc---------------hh-HHHHHHH
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSE---LVQK--FIG---------------EG-SRMVREL 296 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~---l~~~--~~~---------------~~-~~~v~~~ 296 (378)
+.+.+|+.++|.||||+|||||+++|++...++ .+.+.+.. +... +.+ ++ ...+...
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~ 145 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAA 145 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHH
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHH
Confidence 577889999999999999999999999999887 44444432 1000 000 00 1111111
Q ss_pred HHHhhhh-hhhhc----cCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhc
Q psy6098 297 FVMASLK-KLAFA----HHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQL 371 (378)
Q Consensus 297 ~~~a~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l 371 (378)
+....+. .+... ......+..+|.++ |++.++ ...|.+ ++|+|+.....+.+++.++
T Consensus 146 ~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la-l~~p~~----------------t~Gldp~~~~~l~~ller~ 207 (347)
T 2obl_A 146 FTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA-SGEPDV----------------RGGFPPSVFSSLPKLLERA 207 (347)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH-TTCCCC----------------BTTBCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH-cCCCCc----------------ccCCCHHHHHHHHHHHHHH
Confidence 1111110 00000 00113466778888 677666 344432 4799999999999999988
Q ss_pred c
Q psy6098 372 D 372 (378)
Q Consensus 372 ~ 372 (378)
.
T Consensus 208 ~ 208 (347)
T 2obl_A 208 G 208 (347)
T ss_dssp E
T ss_pred h
Confidence 5
No 256
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.29 E-value=1.2e-06 Score=83.48 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=32.5
Q ss_pred hhhcCCCC--CcceeEeCCCCCchHHHHHHHhhhcCceE
Q psy6098 237 FDALGIAQ--PKGVLLYGPPGTGKTLLARAVAHHTECTF 273 (378)
Q Consensus 237 ~~~~~~~~--~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~ 273 (378)
+-++.+.+ ++.++|+||||||||||+++|+|.+.++.
T Consensus 160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 35567777 88999999999999999999999998765
No 257
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.28 E-value=4e-07 Score=78.25 Aligned_cols=41 Identities=27% Similarity=0.381 Sum_probs=35.2
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcc
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 281 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l 281 (378)
.+.+|+.++|+|||||||||+++.|++......|.+++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 46788999999999999999999999997767888877654
No 258
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.27 E-value=9e-07 Score=90.09 Aligned_cols=104 Identities=11% Similarity=0.105 Sum_probs=60.3
Q ss_pred eeEeCCCCCchHHHHHHHhhhcCc-e--EEEeccCccc----------ccccc--------hhHHHHHHHHHHhhhhhhh
Q psy6098 248 VLLYGPPGTGKTLLARAVAHHTEC-T--FIRVSGSELV----------QKFIG--------EGSRMVRELFVMASLKKLA 306 (378)
Q Consensus 248 ~ll~Gp~G~GKTtl~~~ia~~~~~-~--~i~~~~~~l~----------~~~~~--------~~~~~v~~~~~~a~~~~~~ 306 (378)
++|+||||||||||+++|+|...+ + .|.+.+.++. ...++ .....+.+.+..+.... .
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~-~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI-A 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH-H
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh-c
Confidence 999999999999999999999755 2 5555554431 00111 12234555444331110 0
Q ss_pred hccCchhhhhHhhhhhhhhh--cccccCCCeEEEEecCccccCCCCCC------CCCCChHHHHHHHHHHHhc
Q psy6098 307 FAHHPLLFWSLLTILTNTIV--CNFREHAPSIIFMDEIDSIGSSRIES------GSGGDSEVQRTMLELLNQL 371 (378)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~vl~lDEid~~~~~r~~~------~~~~d~~~~~~~~~lL~~l 371 (378)
... .....+.+ .+...+.|.++++|| | ++++|+.....+.+++..+
T Consensus 127 ~~~---------~~~s~~~i~l~i~~~~~p~LlLlDe----------PGi~~~~t~~LD~~~~~~i~~li~~~ 180 (608)
T 3szr_A 127 GEG---------MGISHELITLEISSRDVPDLTLIDL----------PGITRVAVGNQPADIGYKIKTLIKKY 180 (608)
T ss_dssp CSS---------SCCCSCCEEEEEEESSSCCEEEEEC----------CC------CCSSCSHHHHHHHHHHHH
T ss_pred CCc---------cccchHHHHHHhcCCCCCceeEeeC----------CCccccccCCCCHHHHHHHHHHHHHH
Confidence 000 00011111 122236799999999 7 9999999888999998884
No 259
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.27 E-value=3.1e-07 Score=86.72 Aligned_cols=67 Identities=15% Similarity=-0.015 Sum_probs=45.2
Q ss_pred CCCCCCCChhHHHHHHHhhccC------ceEEEeccccccccccchhHHHHHHHHHHHHhc------------CC-CCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTE------CTFIRVSGSELVQKFIGEGSRMVRELFVMARCK------------GS-SRGT 65 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~------~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~------------~~-~~~~ 65 (378)
++.||||||||++|+++|+.++ ..++.+++++..+ ...+++.+...... .| ....
T Consensus 62 ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (353)
T 1sxj_D 62 LFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYK 135 (353)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCce
Confidence 5789999999999999999875 3688888887532 12333333222211 12 2235
Q ss_pred eEEEeehhhhhh
Q psy6098 66 EFFTMDVDEAIK 77 (378)
Q Consensus 66 ilf~DEid~~~~ 77 (378)
|+|+||++.+..
T Consensus 136 vliiDE~~~l~~ 147 (353)
T 1sxj_D 136 IIILDEADSMTA 147 (353)
T ss_dssp EEEETTGGGSCH
T ss_pred EEEEECCCccCH
Confidence 999999998853
No 260
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.26 E-value=7.9e-07 Score=84.94 Aligned_cols=69 Identities=14% Similarity=-0.008 Sum_probs=45.5
Q ss_pred CCCCCCCChhHHHHHHHhhcc----CceEEEecccccccc----------------ccchh-HHHHHHHHHHHHhcCCCC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT----ECTFIRVSGSELVQK----------------FIGEG-SRMVRELFVMARCKGSSR 63 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~----~~~~~~v~~~~~~~~----------------~~Ges-e~~~~~~f~~a~~~~~~~ 63 (378)
++.||||||||++++++++.+ +..++.+++++..+. ..|.+ +.....+.+...... .
T Consensus 48 li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~--~ 125 (389)
T 1fnn_A 48 TLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERD--L 125 (389)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTT--C
T ss_pred EEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcC--C
Confidence 578999999999999999988 678999997654321 01222 222333333333222 1
Q ss_pred CceEEEeehhhh
Q psy6098 64 GTEFFTMDVDEA 75 (378)
Q Consensus 64 ~~ilf~DEid~~ 75 (378)
..|||+||++.+
T Consensus 126 ~~vlilDE~~~l 137 (389)
T 1fnn_A 126 YMFLVLDDAFNL 137 (389)
T ss_dssp CEEEEEETGGGS
T ss_pred eEEEEEECcccc
Confidence 239999999988
No 261
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.26 E-value=5.9e-07 Score=83.71 Aligned_cols=27 Identities=44% Similarity=0.736 Sum_probs=23.9
Q ss_pred CCcceeEeCCCCCchHHHHHHHhhhcC
Q psy6098 244 QPKGVLLYGPPGTGKTLLARAVAHHTE 270 (378)
Q Consensus 244 ~~~~~ll~Gp~G~GKTtl~~~ia~~~~ 270 (378)
.+.+++|+||||||||+|+++|+..+.
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999998665
No 262
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.25 E-value=1.5e-06 Score=85.30 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=35.8
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcc
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL 281 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l 281 (378)
-++.+..|..++|+||||||||||++.|++.+.+. .|.+.+.+.
T Consensus 286 Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp CCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred ceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 45677889999999999999999999999998654 666655443
No 263
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.24 E-value=7.9e-06 Score=76.87 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC
Q psy6098 216 LDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 270 (378)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~ 270 (378)
+++..+.+...+.. + ..+..++|+||+|+|||++++.+|..+.
T Consensus 7 ~~~~~~~l~~~i~~-----------~-~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 7 LRPDFEKLVASYQA-----------G-RGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp GHHHHHHHHHHHHT-----------T-CCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHc-----------C-CcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 35556666655442 0 2234699999999999999999998764
No 264
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.21 E-value=2.5e-06 Score=79.21 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=31.9
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcc
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL 281 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l 281 (378)
+...+++.++|+||||+||||+++.||+.+.+. .+.+.+.+.
T Consensus 99 ~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 99 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred ccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 345678899999999999999999999987543 444444333
No 265
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.21 E-value=1.3e-07 Score=98.34 Aligned_cols=29 Identities=34% Similarity=0.423 Sum_probs=25.2
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhhc
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT 269 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~ 269 (378)
+.+. |+.++|+||||+||||++|+|++..
T Consensus 572 isl~-g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 572 LEMA-HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEES-SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ccCC-CcEEEEECCCCCChHHHHHHHHhhh
Confidence 3444 8899999999999999999999875
No 266
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.21 E-value=7e-07 Score=83.20 Aligned_cols=66 Identities=20% Similarity=0.091 Sum_probs=44.9
Q ss_pred CCCCCCCChhHHHHHHHhhccC-----ceEEEeccccccccccchhHHHHHHHHHHHHhcCC---CCCceEEEeehhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTE-----CTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGS---SRGTEFFTMDVDEAI 76 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~-----~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~---~~~~ilf~DEid~~~ 76 (378)
++.||||||||++|+++|+.++ ..++.+++++..+. ..+++.+.......| +...++|+||++.+.
T Consensus 50 ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 123 (327)
T 1iqp_A 50 LFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALT 123 (327)
T ss_dssp EEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC
T ss_pred EEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC
Confidence 5789999999999999999874 35888887765321 223333332222233 335699999999884
No 267
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.21 E-value=1.2e-06 Score=85.38 Aligned_cols=115 Identities=12% Similarity=0.113 Sum_probs=71.2
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccC---cccc---------------cccchh------HHHH
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGS---ELVQ---------------KFIGEG------SRMV 293 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~---~l~~---------------~~~~~~------~~~v 293 (378)
+.+.+|+.++|.||||||||||+++|++...++ .|.+.|. ++.. .++.+. ...+
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v 231 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQG 231 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHH
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHH
Confidence 678899999999999999999999999999877 5666665 3311 011111 1122
Q ss_pred HHHHHHhhhhhhhh----ccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHH
Q psy6098 294 RELFVMASLKKLAF----AHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLN 369 (378)
Q Consensus 294 ~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~ 369 (378)
.+...... +.+.. ..........+|.++ |++.++ ...|.+ ++++|+.....+.++|.
T Consensus 232 ~~~~~~~a-e~~~~~~~~v~~~ld~l~~lS~g~-qrvslA-l~~p~~----------------t~glD~~~~~~l~~ll~ 292 (438)
T 2dpy_A 232 AAYATRIA-EDFRDRGQHVLLIMDSLTRYAMAQ-REIALA-IGEPPA----------------TKGYPPSVFAKLPALVE 292 (438)
T ss_dssp HHHHHHHH-HHHHTTTCEEEEEEECHHHHHHHH-HHHHHH-TTCCCC----------------SSSCCTTHHHHHHHHHT
T ss_pred HHHHHHHH-HHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH-hCCCcc----------------cccCCHHHHHHHHHHHH
Confidence 22211110 00000 011112355677777 777666 444433 57899999999999998
Q ss_pred hccC
Q psy6098 370 QLDG 373 (378)
Q Consensus 370 ~l~~ 373 (378)
++..
T Consensus 293 r~~~ 296 (438)
T 2dpy_A 293 RAGN 296 (438)
T ss_dssp TCSC
T ss_pred HHHh
Confidence 8754
No 268
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.21 E-value=1.3e-05 Score=93.64 Aligned_cols=276 Identities=17% Similarity=0.174 Sum_probs=0.0
Q ss_pred CCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhhccCCCCchhh
Q psy6098 8 TWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIKSSEGFKPYYV 87 (378)
Q Consensus 8 ~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~~~~g~~~~~~ 87 (378)
||+|||||.+++.+|..+|..++.+++++ |-..+.+-.+|.-+- ..|.-..|||+..+-
T Consensus 611 GPaGtGKTet~k~La~~lgr~~~vfnC~~------~~d~~~~g~i~~G~~----~~GaW~cfDEfNrl~----------- 669 (3245)
T 3vkg_A 611 GPAGTGKTETVKALGSQLGRFVLVFCCDE------GFDLQAMSRIFVGLC----QCGAWGCFDEFNRLE----------- 669 (3245)
T ss_dssp CSTTSSHHHHHHHHHHHTTCCEEEEECSS------CCCHHHHHHHHHHHH----HHTCEEEEETTTSSC-----------
T ss_pred CCCCCCHHHHHHHHHHHhCCeEEEEeCCC------CCCHHHHHHHHhhHh----hcCcEEEehhhhcCC-----------
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cccccccccccceeeccCCCceeeecCcccc
Q psy6098 88 TKIEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYV-GEVVKPMDKKKVLVKVHPEGKFVVDIDKNID 166 (378)
Q Consensus 88 ~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~eel~~l~~~g~~~-~~i~~~l~~~~~i~~~~~~~~~~~~l~~~i~ 166 (378)
......+...+..+..-+..-...-.|. |..+...+.-...+....+..-...+.++..
T Consensus 670 --------------------~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk 729 (3245)
T 3vkg_A 670 --------------------ERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLK 729 (3245)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHH
Q ss_pred cc---------ccCccchhhcccchhhhhhhcCCCCchhhhhhccccCCCCCcccccCcHHHHHHHHHHHhccccC----
Q psy6098 167 IN---------DVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDNQIKEIKEVIELPVKH---- 233 (378)
Q Consensus 167 ~~---------~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~---- 233 (378)
.. +...-+++.+....+.-.+.+..+.-.......-..-...+|| .|+..+|.-|..+=..-...
T Consensus 730 ~lFr~v~m~~Pd~~~i~ei~L~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYD--fGLRalKsVL~~AG~lkr~~~~~~ 807 (3245)
T 3vkg_A 730 KLFRSMAMIKPDREMIAQVMLYSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYD--FGLRALKSVLVSAGGIKRKCQPPQ 807 (3245)
T ss_dssp TTEEEEECCSCCHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCC--CSHHHHHHHHHHHHHHHHSCCCC-
T ss_pred hhcEEEEEeCCCHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhCCCCCCC--CChHHHHHHHHHHHHHHHhhhhhc
Q ss_pred ----ch---------------------------------------------hhhhcCCCCCc------------------
Q psy6098 234 ----PE---------------------------------------------LFDALGIAQPK------------------ 246 (378)
Q Consensus 234 ----~~---------------------------------------------~~~~~~~~~~~------------------ 246 (378)
++ +|....++...
T Consensus 808 ~~~~~~~~~~~~~~~~~~~~E~~illralrd~nlpKl~~~D~plF~~li~DlFPgv~~~~~~~~~l~~ai~~~~~~~~L~ 887 (3245)
T 3vkg_A 808 LPPITDAESKTKADQIYCQYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLV 887 (3245)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCGGGHHHHHHHHHHHSTTCCCCCCCCHHHHHHHHHHHHHTTCC
T ss_pred ccccccccccccccccccccHHHHHHHHHHHhccCCCchhhHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHcCCc
Q ss_pred --------------------ceeEeCCCCCchHHHHHHHhhhcCce------EEEeccCccccc-------------ccc
Q psy6098 247 --------------------GVLLYGPPGTGKTLLARAVAHHTECT------FIRVSGSELVQK-------------FIG 287 (378)
Q Consensus 247 --------------------~~ll~Gp~G~GKTtl~~~ia~~~~~~------~i~~~~~~l~~~-------------~~~ 287 (378)
++.++||+|+||||+.++++..+..- ...++...+... .-|
T Consensus 888 ~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKait~~eLyG~~d~~T~EW~DG 967 (3245)
T 3vkg_A 888 TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDG 967 (3245)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTSCHHHHHEEECTTTCCEEEC
T ss_pred cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCCchhhhceeecCCCCeeecc
Q ss_pred hhHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHH
Q psy6098 288 EGSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTML 365 (378)
Q Consensus 288 ~~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~ 365 (378)
--....|++.... +. ....+|+||- ..|+...+.++
T Consensus 968 vls~i~R~~~~~~-----------------------------~~~~~~~~WIvfDG-------------pVDa~WIEnlN 1005 (3245)
T 3vkg_A 968 LFTATLRRIIDNV-----------------------------RGESTKRHWIIFDG-------------DVDPEWVENLN 1005 (3245)
T ss_dssp HHHHHHHHHHTTS-----------------------------SSGGGEEEEEEEES-------------CCCHHHHTTTH
T ss_pred HHHHHHHHHHhcc-----------------------------cCCCCCceEEEECC-------------CCCHHHHHHHH
Q ss_pred HHH
Q psy6098 366 ELL 368 (378)
Q Consensus 366 ~lL 368 (378)
.+|
T Consensus 1006 sVL 1008 (3245)
T 3vkg_A 1006 SLL 1008 (3245)
T ss_dssp HHH
T ss_pred HHh
No 269
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.20 E-value=3.1e-07 Score=85.33 Aligned_cols=66 Identities=21% Similarity=0.114 Sum_probs=45.3
Q ss_pred CCCCCCCChhHHHHHHHhhcc-----CceEEEeccccccccccchhHHHHHHHHHHHHhcCC---CCCceEEEeehhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT-----ECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGS---SRGTEFFTMDVDEAI 76 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~-----~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~---~~~~ilf~DEid~~~ 76 (378)
++.||||||||++|+++|+.+ +..|+.+++++..+. . .+++++.......| +...|+|+||+|.+.
T Consensus 42 ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~ 115 (319)
T 2chq_A 42 LFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI--D----VVRHKIKEFARTAPIGGAPFKIIFLDEADALT 115 (319)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT--T----TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC
T ss_pred EEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh--H----HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC
Confidence 678999999999999999986 457888998875431 1 22233322222222 334699999999875
No 270
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.20 E-value=1.5e-07 Score=88.94 Aligned_cols=22 Identities=27% Similarity=0.054 Sum_probs=20.4
Q ss_pred CCCCCCCChhHHHHHHHhhccC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTE 26 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~ 26 (378)
++.||||||||++||++|..++
T Consensus 49 Ll~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 49 LVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEECCGGGCTTHHHHHHHHHSC
T ss_pred EEECCCCccHHHHHHHHHHhCc
Confidence 5789999999999999999886
No 271
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.17 E-value=2.4e-07 Score=83.40 Aligned_cols=27 Identities=26% Similarity=0.571 Sum_probs=23.2
Q ss_pred CCcceeEeCCCCCchHHHHHHHhhhcC
Q psy6098 244 QPKGVLLYGPPGTGKTLLARAVAHHTE 270 (378)
Q Consensus 244 ~~~~~ll~Gp~G~GKTtl~~~ia~~~~ 270 (378)
.++.++|.|||||||||++++|+..++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999994443
No 272
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.17 E-value=3.4e-06 Score=78.35 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=32.4
Q ss_pred CCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcc
Q psy6098 244 QPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL 281 (378)
Q Consensus 244 ~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l 281 (378)
+|+.++|+|||||||||+++.||+.+.+. .|.+.+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence 57899999999999999999999998765 677766654
No 273
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.17 E-value=1.1e-06 Score=76.15 Aligned_cols=33 Identities=21% Similarity=0.473 Sum_probs=27.3
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcCceE
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTF 273 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~ 273 (378)
+++...+++|+||||||||+++.++|..+....
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 355556799999999999999999999886543
No 274
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.17 E-value=2e-07 Score=86.89 Aligned_cols=66 Identities=14% Similarity=0.050 Sum_probs=42.9
Q ss_pred CCCCCCCChhHHHHHHHhhccC----ceEEEeccccccccccchh-HHHHHHHHHHHHhcCCCCCceEEEeehhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTE----CTFIRVSGSELVQKFIGEG-SRMVRELFVMARCKGSSRGTEFFTMDVDEA 75 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~----~~~~~v~~~~~~~~~~Ges-e~~~~~~f~~a~~~~~~~~~ilf~DEid~~ 75 (378)
++.||||||||+||+++|.++. .+++.++.++++..+.+.. ...+..+++... .+. +|||||+...
T Consensus 156 ll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~---lLiiDdig~~ 226 (308)
T 2qgz_A 156 YLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVP---VLILDDIGAE 226 (308)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSS---EEEEETCCC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCC---EEEEcCCCCC
Confidence 4789999999999999998664 6888888888776543211 111222233222 223 8999999654
No 275
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=9.1e-07 Score=82.26 Aligned_cols=66 Identities=15% Similarity=0.059 Sum_probs=48.2
Q ss_pred CCCCCCCChhHHHHHHHhhcc-----CceEEEeccccccccccchhHHHHHHHHHHHHhc-CC--C-CCceEEEeehhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT-----ECTFIRVSGSELVQKFIGEGSRMVRELFVMARCK-GS--S-RGTEFFTMDVDEA 75 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~-----~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~-~~--~-~~~ilf~DEid~~ 75 (378)
++.||||||||++|+++|+.+ +..++++++++..+ ...++++++..... .+ . ...|+||||++.+
T Consensus 46 ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l 119 (323)
T 1sxj_B 46 IISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM 119 (323)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS
T ss_pred EEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccC
Confidence 678999999999999999986 35688888876432 34566777665521 11 1 2459999999987
Q ss_pred h
Q psy6098 76 I 76 (378)
Q Consensus 76 ~ 76 (378)
.
T Consensus 120 ~ 120 (323)
T 1sxj_B 120 T 120 (323)
T ss_dssp C
T ss_pred C
Confidence 5
No 276
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.13 E-value=9.6e-07 Score=77.94 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=41.9
Q ss_pred CCCCCCCChhHHHHHHHhhccCce------------------------EEEeccccccccccchhHHHHHHHHHHHHhcC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECT------------------------FIRVSGSELVQKFIGEGSRMVRELFVMARCKG 60 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~------------------------~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~ 60 (378)
++.||||||||++|+++++.++.. ++.++.+. ......++.+++.+....
T Consensus 49 ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 122 (250)
T 1njg_A 49 LFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAP 122 (250)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSC
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhch
Confidence 578999999999999999887532 22222211 123445667766553221
Q ss_pred -CCCCceEEEeehhhhh
Q psy6098 61 -SSRGTEFFTMDVDEAI 76 (378)
Q Consensus 61 -~~~~~ilf~DEid~~~ 76 (378)
.....+|||||++.+.
T Consensus 123 ~~~~~~vlviDe~~~l~ 139 (250)
T 1njg_A 123 ARGRFKVYLIDEVHMLS 139 (250)
T ss_dssp SSSSSEEEEEETGGGSC
T ss_pred hcCCceEEEEECccccc
Confidence 1223599999999873
No 277
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.12 E-value=1.3e-05 Score=77.03 Aligned_cols=51 Identities=16% Similarity=0.224 Sum_probs=38.8
Q ss_pred ccccCcHHHHHHHHHHH-hccccCchhhhhcCC-CCCcceeE--eCCCCCchHHHHHHHhhhc
Q psy6098 211 EMVGGLDNQIKEIKEVI-ELPVKHPELFDALGI-AQPKGVLL--YGPPGTGKTLLARAVAHHT 269 (378)
Q Consensus 211 ~~i~g~~~~~~~l~~~~-~~~~~~~~~~~~~~~-~~~~~~ll--~Gp~G~GKTtl~~~ia~~~ 269 (378)
+++.|.++..++|.+.+ ..... +. ..+..++| +||+|+|||+|++.++..+
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 47899999999998886 43111 10 23457888 9999999999999999876
No 278
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.12 E-value=1.4e-06 Score=80.30 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=26.3
Q ss_pred CCCCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 242 IAQPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 242 ~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
-..+..++|.||+||||||+++.|++.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345678999999999999999999998864
No 279
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=98.11 E-value=2.4e-06 Score=63.26 Aligned_cols=75 Identities=29% Similarity=0.520 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhccccccccccccccccceeeccCCCceeeecCccccccccCccchhhcccchhhhhhhcCC
Q psy6098 117 KVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPN 191 (378)
Q Consensus 117 ~~~~l~eel~~l~~~g~~~~~i~~~l~~~~~i~~~~~~~~~~~~l~~~i~~~~l~~~~~~~~~~~~~~l~~i~~~ 191 (378)
.+..++++++.++.+|.+.+++.+.++++.++++...+..+++++.+.++.+.+.|++++++.+..+++..++|.
T Consensus 3 ev~~lkeei~~L~~~P~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~vLp~ 77 (85)
T 3h43_A 3 ENEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPE 77 (85)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEEEEEETTEEEEEETTSSEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEECC-
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEcCCCEEEEEeCCCCeEEEEecCccCHHHCCCCCEEEECCcccCHhhhhhh
Confidence 467788899999999999999999999999999999999999999999999999999999999888888877664
No 280
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.10 E-value=4.3e-06 Score=80.51 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=31.4
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHh--hhcC-------ceEEEeccCc
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVA--HHTE-------CTFIRVSGSE 280 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia--~~~~-------~~~i~~~~~~ 280 (378)
|+.+|+.++|+||||||||||++.++ .... ...+.+++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 78899999999999999999999665 3332 2367777654
No 281
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.09 E-value=1.2e-06 Score=76.25 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=28.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhc
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 269 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~ 269 (378)
.++.+.++..++|+|+||+|||||++++++..
T Consensus 19 ~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 19 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred hHCCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44788889999999999999999999999876
No 282
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.09 E-value=1.9e-06 Score=74.70 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=26.1
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhhcC
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 270 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~ 270 (378)
+.+.+|+.++|+|||||||||++++|++.+.
T Consensus 2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 2 NAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4567889999999999999999999999864
No 283
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.07 E-value=1.7e-05 Score=73.30 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=30.9
Q ss_pred CCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcc
Q psy6098 243 AQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL 281 (378)
Q Consensus 243 ~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l 281 (378)
.+++.++++|++|+||||+++.+|+.+... .+.+.+.++
T Consensus 96 ~~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 96 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 377889999999999999999999987643 555555544
No 284
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.07 E-value=4.9e-06 Score=78.76 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=30.9
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhhcC---ceEEEeccC
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---CTFIRVSGS 279 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~---~~~i~~~~~ 279 (378)
-++.+|+.++|+||||+|||||+..++.... ...+.++..
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 3788899999999999999999999886542 234555544
No 285
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.06 E-value=7.2e-06 Score=76.91 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=33.6
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcc
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL 281 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l 281 (378)
...+|+.++|+||||+||||+++.||+.+.+. .|.+.+.++
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~ 167 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDT 167 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecc
Confidence 34678999999999999999999999998754 566665554
No 286
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.03 E-value=2.7e-07 Score=93.62 Aligned_cols=68 Identities=12% Similarity=0.046 Sum_probs=43.6
Q ss_pred CCCCCCCCCChhHHHHHHHhhccCceEEE----eccccccccccchhHHH----HHHHHHHHHhcCCCCCceEEEeehhh
Q psy6098 3 KPLHPTWIVSGKTLLARAVAHHTECTFIR----VSGSELVQKFIGEGSRM----VRELFVMARCKGSSRGTEFFTMDVDE 74 (378)
Q Consensus 3 ~~~~~~pPGtGKt~~a~~~a~~~~~~~~~----v~~~~~~~~~~Gese~~----~~~~f~~a~~~~~~~~~ilf~DEid~ 74 (378)
|=++.||||||||++||++|+.++..++. .+++++.+......... -...+..| .++|+||||+|.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A------~~gil~IDEid~ 402 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA------DGGIAVIDEIDK 402 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH------SSSEECCTTTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEec------CCCcEEeehhhh
Confidence 45788999999999999999999866554 34445554333221000 00122223 257999999998
Q ss_pred hh
Q psy6098 75 AI 76 (378)
Q Consensus 75 ~~ 76 (378)
+-
T Consensus 403 l~ 404 (595)
T 3f9v_A 403 MR 404 (595)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 287
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=2.6e-06 Score=73.87 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=30.7
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEec
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 277 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~ 277 (378)
-++.+.++..++|+|||||||||+++.|++.++..++..+
T Consensus 18 ~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 18 LYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3566778889999999999999999999999988776554
No 288
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.01 E-value=1.7e-06 Score=82.23 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=43.8
Q ss_pred CCCCCCCChhHHHHHHHhhccCce------------------------EEEeccccccccccchhHHHHHHHHHHHHhcC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECT------------------------FIRVSGSELVQKFIGEGSRMVRELFVMARCKG 60 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~------------------------~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~ 60 (378)
++.||||||||++|+++|+.+++. ++.++.++- .+...++++++.+....
T Consensus 42 ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~ 115 (373)
T 1jr3_A 42 LFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAP 115 (373)
T ss_dssp EEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCC
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhcc
Confidence 688999999999999999988642 333333220 12234677777765321
Q ss_pred C-CCCceEEEeehhhhh
Q psy6098 61 S-SRGTEFFTMDVDEAI 76 (378)
Q Consensus 61 ~-~~~~ilf~DEid~~~ 76 (378)
. ....|+||||++.+.
T Consensus 116 ~~~~~~vliiDe~~~l~ 132 (373)
T 1jr3_A 116 ARGRFKVYLIDEVHMLS 132 (373)
T ss_dssp SSSSSEEEEEECGGGSC
T ss_pred ccCCeEEEEEECcchhc
Confidence 1 223599999999874
No 289
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.00 E-value=1.2e-05 Score=74.48 Aligned_cols=37 Identities=11% Similarity=-0.005 Sum_probs=29.8
Q ss_pred hhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCC-CCChHHH
Q psy6098 313 LFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGS-GGDSEVQ 361 (378)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~-~~d~~~~ 361 (378)
..+..+|++++|++..++.+ .+|++|| |++ ++|+...
T Consensus 109 ~~~~~~sgg~rqrv~~ara~--~ll~lde----------Pt~~~Ld~~~~ 146 (301)
T 2qnr_A 109 RYLHDESGLNRRHIIDNRVH--CCFYFIS----------PFGHGLKPLDV 146 (301)
T ss_dssp HHHHHHTSSCCTTCCCCCCC--EEEEEEC----------SSSSSCCHHHH
T ss_pred HHHHHhCHHhhhhhhhhhhh--heeeeec----------CcccCCCHHHH
Confidence 55778999999998887776 4999999 876 4998653
No 290
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.00 E-value=1.5e-05 Score=75.32 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=33.2
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcC---ceEEEeccCcc
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTE---CTFIRVSGSEL 281 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~---~~~i~~~~~~l 281 (378)
|+.+|..++|+||||+|||||+..++..+. ...+.++....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 788899999999999999999999998753 33566666543
No 291
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.00 E-value=3.3e-06 Score=80.40 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=36.3
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccC
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGS 279 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~ 279 (378)
-++.+.+|+.++|.||||+|||||+++|++.+.+. .|.+++.
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~ 211 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV 211 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc
Confidence 46678889999999999999999999999999875 7777653
No 292
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=3e-06 Score=79.85 Aligned_cols=66 Identities=15% Similarity=-0.007 Sum_probs=45.6
Q ss_pred CCCCCCCChhHHHHHHHhhccC-----ceEEEeccccccccccchhHHHHHHHHHHHHh-cCC--CCCceEEEeehhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTE-----CTFIRVSGSELVQKFIGEGSRMVRELFVMARC-KGS--SRGTEFFTMDVDEAI 76 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~-----~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~-~~~--~~~~ilf~DEid~~~ 76 (378)
++.||||||||++|+++|+.+. ..+++++.++..+ -..+|+....... ..| ....|+++||+|.+.
T Consensus 50 ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~ 123 (340)
T 1sxj_C 50 LFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT 123 (340)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC
T ss_pred EEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC
Confidence 5789999999999999999863 3578888876422 2345555544332 222 224699999999874
No 293
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.99 E-value=5.3e-06 Score=72.47 Aligned_cols=40 Identities=28% Similarity=0.424 Sum_probs=33.0
Q ss_pred CCCCcceeEeCCCCCchHHHHHHHhhhcCc-----eEEEeccCcc
Q psy6098 242 IAQPKGVLLYGPPGTGKTLLARAVAHHTEC-----TFIRVSGSEL 281 (378)
Q Consensus 242 ~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~-----~~i~~~~~~l 281 (378)
..+|+.++|.||||||||||+++|++.+.+ ..|.+++..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 467889999999999999999999999863 3666666544
No 294
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.98 E-value=2.7e-06 Score=84.62 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=34.4
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCc
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSE 280 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~ 280 (378)
+.+..+.+++|.|||||||||+++++++.+.+. .+.+.+..
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 345678889999999999999999999999875 77776653
No 295
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.97 E-value=4.2e-06 Score=94.03 Aligned_cols=71 Identities=17% Similarity=0.057 Sum_probs=54.5
Q ss_pred CCCCCCCChhHHHHHHHhhcc---CceEEEeccccc----cccccc------------hhHHHHHHHHHHHHhcCCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT---ECTFIRVSGSEL----VQKFIG------------EGSRMVRELFVMARCKGSSRGT 65 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~---~~~~~~v~~~~~----~~~~~G------------ese~~~~~~f~~a~~~~~~~~~ 65 (378)
++.||||||||+||.++|.+. |..+..++..+. ..+..| .+|+.++.++..++..+|+
T Consensus 1431 ll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~--- 1507 (2050)
T 3cmu_A 1431 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD--- 1507 (2050)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS---
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCC---
Confidence 468999999999999998765 334444554432 223334 6778899999999999999
Q ss_pred eEEEeehhhhhhc
Q psy6098 66 EFFTMDVDEAIKS 78 (378)
Q Consensus 66 ilf~DEid~~~~~ 78 (378)
++||||++++++.
T Consensus 1508 lVVIDsi~al~p~ 1520 (2050)
T 3cmu_A 1508 VIVVDSVAALTPK 1520 (2050)
T ss_dssp EEEESCGGGCCCH
T ss_pred EEEEcChhHhccc
Confidence 9999999999874
No 296
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.96 E-value=4.7e-06 Score=77.41 Aligned_cols=66 Identities=8% Similarity=-0.022 Sum_probs=48.8
Q ss_pred CCCCCCCChhHHHHHHHhhcc------CceEEEeccccccccccchhHHHHHHHHHHHHhcCCCC--CceEEEeehhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT------ECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSR--GTEFFTMDVDEAI 76 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~------~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~--~~ilf~DEid~~~ 76 (378)
+|.||||||||++|+++|+.+ ...|+++++++ +. -+-..+|++.+.|. ..|.. .-|+||||+|.+-
T Consensus 22 Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~--~~id~ir~li~~~~-~~p~~~~~kvviIdead~lt 95 (305)
T 2gno_A 22 LINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---EN--IGIDDIRTIKDFLN-YSPELYTRKYVIVHDCERMT 95 (305)
T ss_dssp EEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SC--BCHHHHHHHHHHHT-SCCSSSSSEEEEETTGGGBC
T ss_pred EEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CC--CCHHHHHHHHHHHh-hccccCCceEEEeccHHHhC
Confidence 578999999999999999864 34677777653 11 23346889998886 34432 3599999999984
No 297
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.94 E-value=1.5e-06 Score=75.65 Aligned_cols=71 Identities=13% Similarity=0.015 Sum_probs=44.0
Q ss_pred CCCCCCCChhHHHHHHHhhc--------cC-ceEEEecccccccccc----------ch-----hHHHHHHHHHHHHhcC
Q psy6098 5 LHPTWIVSGKTLLARAVAHH--------TE-CTFIRVSGSELVQKFI----------GE-----GSRMVRELFVMARCKG 60 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~--------~~-~~~~~v~~~~~~~~~~----------Ge-----se~~~~~~f~~a~~~~ 60 (378)
+++||||||||++|.+++.. .| .+++..+..+|.-.+. .. ....+.+.+..+.
T Consensus 9 l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~--- 85 (199)
T 2r2a_A 9 LITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE--- 85 (199)
T ss_dssp EEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG---
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc---
Confidence 67899999999999986433 34 5566677676654332 11 1122333221121
Q ss_pred CCCCceEEEeehhhhhhcc
Q psy6098 61 SSRGTEFFTMDVDEAIKSS 79 (378)
Q Consensus 61 ~~~~~ilf~DEid~~~~~~ 79 (378)
.++.||||||++.+.+.+
T Consensus 86 -~~~~vliIDEAq~l~~~~ 103 (199)
T 2r2a_A 86 -NIGSIVIVDEAQDVWPAR 103 (199)
T ss_dssp -GTTCEEEETTGGGTSBCC
T ss_pred -cCceEEEEEChhhhccCc
Confidence 234599999999998654
No 298
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.92 E-value=4.9e-06 Score=70.43 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=28.1
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSEL 37 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~ 37 (378)
+++||||+|||++|++||..++..|+.++..++
T Consensus 7 ~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 7 ILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp EEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 468999999999999999999988887665443
No 299
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.92 E-value=3e-05 Score=72.56 Aligned_cols=53 Identities=23% Similarity=0.196 Sum_probs=41.3
Q ss_pred CcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEecc
Q psy6098 209 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 278 (378)
Q Consensus 209 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~ 278 (378)
.-..++|.+...+.|.+.+.. +..++++||+|+|||+|++.++...+ .+.++.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~ 62 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDC 62 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEH
T ss_pred ChHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEe
Confidence 345788999999998877542 25799999999999999999998764 444443
No 300
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.90 E-value=6.3e-06 Score=71.47 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=29.8
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcc
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 281 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l 281 (378)
...+|+.++|.|||||||||+++.|++.++. +.+++.++
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~--~~i~~d~~ 63 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADETGL--EFAEADAF 63 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHCC--EEEEGGGG
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhhCC--eEEccccc
Confidence 3456889999999999999999999998854 45555544
No 301
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.90 E-value=7.4e-06 Score=77.06 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=46.3
Q ss_pred CCCCCCCChhHHHHHHHhhccCce------------------------EEEeccccccccccchhHHHHHHHHHHHHhcC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECT------------------------FIRVSGSELVQKFIGEGSRMVRELFVMARCKG 60 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~------------------------~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~ 60 (378)
++.||||||||++|+++|+.+.+. ++.+++.+- ++. -+-..+|++++.+....
T Consensus 28 L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~~--~~i~~ir~l~~~~~~~~ 104 (334)
T 1a5t_A 28 LIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KNT--LGVDAVREVTEKLNEHA 104 (334)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CSS--BCHHHHHHHHHHTTSCC
T ss_pred EEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CCC--CCHHHHHHHHHHHhhcc
Confidence 678999999999999999987642 334433210 111 23356888888876332
Q ss_pred C-CCCceEEEeehhhhh
Q psy6098 61 S-SRGTEFFTMDVDEAI 76 (378)
Q Consensus 61 ~-~~~~ilf~DEid~~~ 76 (378)
. +...|++|||+|.+.
T Consensus 105 ~~~~~kvviIdead~l~ 121 (334)
T 1a5t_A 105 RLGGAKVVWVTDAALLT 121 (334)
T ss_dssp TTSSCEEEEESCGGGBC
T ss_pred ccCCcEEEEECchhhcC
Confidence 1 223599999999874
No 302
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.89 E-value=7.2e-06 Score=78.28 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=33.0
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
++++.+++.++|+||||+|||||+++|++.++...+.+
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~ 200 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV 200 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEE
Confidence 45899999999999999999999999999887665443
No 303
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.87 E-value=8.8e-06 Score=68.51 Aligned_cols=31 Identities=29% Similarity=0.629 Sum_probs=27.1
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcCceEEE
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIR 275 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~ 275 (378)
+..++|+|||||||||+++.|++.++..++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 5679999999999999999999998875553
No 304
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.87 E-value=5e-05 Score=71.18 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=42.4
Q ss_pred CcccccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCc
Q psy6098 209 TYEMVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 280 (378)
Q Consensus 209 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~ 280 (378)
.-..++|-++..+.|.+ +.. ..++|+||+|+|||+|++.++.......+.++...
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 34578899998888776 321 37899999999999999999988766556665543
No 305
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.82 E-value=4.3e-06 Score=74.25 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=22.0
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHh-hhcC
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVA-HHTE 270 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia-~~~~ 270 (378)
.+|.+.+|+.++|+|||||||||++++|+ +.+.
T Consensus 20 ~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 20 GSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 56788899999999999999999999999 8863
No 306
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.82 E-value=9.6e-06 Score=70.29 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=26.6
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
.+.+|..++|+|||||||||+++.|++.+.+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5678889999999999999999999998844
No 307
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.81 E-value=4.2e-05 Score=73.42 Aligned_cols=117 Identities=22% Similarity=0.263 Sum_probs=69.8
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcC---ceEEEeccCcccccccch
Q psy6098 212 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE---CTFIRVSGSELVQKFIGE 288 (378)
Q Consensus 212 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~---~~~i~~~~~~l~~~~~~~ 288 (378)
.+.|.....+++.+.+... . .....++|+|++|||||+++++|..... .+|+.+++..+.....
T Consensus 138 ~~ig~s~~m~~l~~~i~~~-a----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~-- 204 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKI-S----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF-- 204 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHH-T----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH--
T ss_pred hhhhccHHhhHHHHHHHHh-c----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH--
Confidence 4666666666666555431 1 1234579999999999999999988765 4599999887644210
Q ss_pred hHHHHHHHHHHhhhhhhhhccCchhhhhHhhhhhhhhhcccccCCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHH
Q psy6098 289 GSRMVRELFVMASLKKLAFAHHPLLFWSLLTILTNTIVCNFREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELL 368 (378)
Q Consensus 289 ~~~~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL 368 (378)
-.++|-... - .+.+....+...+......+||||||+. +++..+..+.++|
T Consensus 205 ----~~elfg~~~--------g------~~tga~~~~~g~~~~a~~gtlfldei~~-----------l~~~~q~~Ll~~l 255 (387)
T 1ny5_A 205 ----EAELFGYEK--------G------AFTGAVSSKEGFFELADGGTLFLDEIGE-----------LSLEAQAKLLRVI 255 (387)
T ss_dssp ----HHHHHCBCT--------T------SSTTCCSCBCCHHHHTTTSEEEEESGGG-----------CCHHHHHHHHHHH
T ss_pred ----HHHhcCCCC--------C------CCCCcccccCCceeeCCCcEEEEcChhh-----------CCHHHHHHHHHHH
Confidence 111221000 0 0000001111112234567999999886 4567788888888
Q ss_pred Hh
Q psy6098 369 NQ 370 (378)
Q Consensus 369 ~~ 370 (378)
++
T Consensus 256 ~~ 257 (387)
T 1ny5_A 256 ES 257 (387)
T ss_dssp HH
T ss_pred hc
Confidence 75
No 308
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.80 E-value=1.1e-05 Score=71.33 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=26.5
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
..++|+.++|+||||+|||||+++|++...+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 4678899999999999999999999999874
No 309
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.80 E-value=1.2e-05 Score=75.89 Aligned_cols=21 Identities=19% Similarity=-0.059 Sum_probs=18.9
Q ss_pred CCCCCCCChhHHHHHHHhhcc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT 25 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~ 25 (378)
++.||||||||++++++|+++
T Consensus 40 ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 40 LLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEECSTTSSHHHHHHTHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999964
No 310
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.78 E-value=2.6e-05 Score=73.39 Aligned_cols=40 Identities=20% Similarity=0.201 Sum_probs=32.3
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEecc
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSG 278 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~ 278 (378)
++.+.++..++|.||||+|||||+++|++.+.+. .+.+.+
T Consensus 49 ~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 49 LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 4567889999999999999999999999987543 444444
No 311
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.78 E-value=4.8e-06 Score=71.02 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=29.6
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccch
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGE 44 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Ge 44 (378)
+++||||||||++|+.||..++.+|+. ..++..+..|.
T Consensus 9 ~l~G~~GsGKst~a~~La~~l~~~~i~--~d~~~~~~~g~ 46 (185)
T 3trf_A 9 YLIGLMGAGKTSVGSQLAKLTKRILYD--SDKEIEKRTGA 46 (185)
T ss_dssp EEECSTTSSHHHHHHHHHHHHCCCEEE--HHHHHHHHHTS
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEE--ChHHHHHHcCC
Confidence 478999999999999999999998854 44454444443
No 312
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.77 E-value=1e-05 Score=70.10 Aligned_cols=28 Identities=36% Similarity=0.659 Sum_probs=23.4
Q ss_pred CCCcceeEeCCCCCchHHHHHHHhhhcC
Q psy6098 243 AQPKGVLLYGPPGTGKTLLARAVAHHTE 270 (378)
Q Consensus 243 ~~~~~~ll~Gp~G~GKTtl~~~ia~~~~ 270 (378)
++|+.++|+||||+|||||+++|++.+.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4678899999999999999999999764
No 313
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.77 E-value=1.8e-05 Score=76.00 Aligned_cols=68 Identities=12% Similarity=0.057 Sum_probs=42.9
Q ss_pred CCCCCChhHHHHHHHhhcc---------CceEEEeccccc------cccc----------cchhH-HHHHHHHHHHHh-c
Q psy6098 7 PTWIVSGKTLLARAVAHHT---------ECTFIRVSGSEL------VQKF----------IGEGS-RMVRELFVMARC-K 59 (378)
Q Consensus 7 ~~pPGtGKt~~a~~~a~~~---------~~~~~~v~~~~~------~~~~----------~Gese-~~~~~~f~~a~~-~ 59 (378)
.||||||||++++.+++.+ +..++.+++... .... .|.+. ...+.+.+...+ .
T Consensus 58 ~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 137 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVEN 137 (412)
T ss_dssp TTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred cCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 7999999999999999877 567888886421 1110 12222 223333333322 2
Q ss_pred CCCCCceEEEeehhhhhh
Q psy6098 60 GSSRGTEFFTMDVDEAIK 77 (378)
Q Consensus 60 ~~~~~~ilf~DEid~~~~ 77 (378)
.|. +|||||++.+..
T Consensus 138 ~~~---llvlDe~~~l~~ 152 (412)
T 1w5s_A 138 HYL---LVILDEFQSMLS 152 (412)
T ss_dssp CEE---EEEEESTHHHHS
T ss_pred CeE---EEEEeCHHHHhh
Confidence 233 999999999864
No 314
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.77 E-value=7.8e-06 Score=80.30 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=37.9
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccc
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELV 282 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~ 282 (378)
.++.+.+ +.++|+||||||||||+++|+|++.++ .|.+++.++.
T Consensus 23 vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 23 RTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred eEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 3567888 999999999999999999999999876 7778777664
No 315
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.74 E-value=1.3e-05 Score=68.55 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=24.1
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
|+.++|.|||||||||++++|++.+..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 457899999999999999999998763
No 316
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.72 E-value=7.8e-05 Score=72.09 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=21.2
Q ss_pred eeEeCCCCCchHHHHHHHhhhcC
Q psy6098 248 VLLYGPPGTGKTLLARAVAHHTE 270 (378)
Q Consensus 248 ~ll~Gp~G~GKTtl~~~ia~~~~ 270 (378)
++|+||||+|||||+++|+|...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 69999999999999999999764
No 317
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.72 E-value=1.2e-05 Score=69.67 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=32.5
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcCc---eEEEeccCcc
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTEC---TFIRVSGSEL 281 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~---~~i~~~~~~l 281 (378)
...+|+.++|.|||||||||++++|++.++. -.+.+++.++
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 4467889999999999999999999998852 2346666554
No 318
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.72 E-value=1.6e-05 Score=65.62 Aligned_cols=54 Identities=13% Similarity=0.011 Sum_probs=45.8
Q ss_pred hhhhhHhhhhhhhhhccc------cc--CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCC
Q psy6098 312 LLFWSLLTILTNTIVCNF------RE--HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFE 375 (378)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~------~~--~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~ 375 (378)
...+..+|+|++|+++++ ++ ..|.++|||| |++++|+..+..+.++|.++...+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDE----------Pt~~LD~~~~~~l~~~l~~~~~~~ 113 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDE----------PTPYLDEERRRKLITIMERYLKKI 113 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEES----------CSCTTCHHHHHHHHHHHHHTGGGS
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEEC----------CCccCCHHHHHHHHHHHHHHHccC
Confidence 446778999999999875 33 7899999999 999999999999999999885433
No 319
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.71 E-value=2.1e-05 Score=66.43 Aligned_cols=36 Identities=33% Similarity=0.533 Sum_probs=28.6
Q ss_pred CCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcc
Q psy6098 244 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 281 (378)
Q Consensus 244 ~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l 281 (378)
+++.++|+|||||||||+++.|++.++..+ +++.++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 467899999999999999999999886444 444443
No 320
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.71 E-value=6.9e-06 Score=78.93 Aligned_cols=65 Identities=22% Similarity=0.326 Sum_probs=45.5
Q ss_pred CCCCCCCChhHHHHHHHhhccC---ceEEEecccccccc-------------ccchhHHHHHHHHHHHHhcCCCCCceEE
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTE---CTFIRVSGSELVQK-------------FIGEGSRMVRELFVMARCKGSSRGTEFF 68 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~---~~~~~v~~~~~~~~-------------~~Gese~~~~~~f~~a~~~~~~~~~ilf 68 (378)
++.|++|||||++||++..... .+|+.|+++.+-.. |.|.... -.-+|+.| .|++||
T Consensus 164 li~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~~a------~~gtlf 236 (387)
T 1ny5_A 164 LITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFELA------DGGTLF 236 (387)
T ss_dssp EEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHHHT------TTSEEE
T ss_pred EEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCceeeC------CCcEEE
Confidence 4679999999999999987764 69999999876532 1111111 11234444 368999
Q ss_pred Eeehhhhh
Q psy6098 69 TMDVDEAI 76 (378)
Q Consensus 69 ~DEid~~~ 76 (378)
+|||+.+-
T Consensus 237 ldei~~l~ 244 (387)
T 1ny5_A 237 LDEIGELS 244 (387)
T ss_dssp EESGGGCC
T ss_pred EcChhhCC
Confidence 99999985
No 321
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.70 E-value=0.00013 Score=67.40 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=25.7
Q ss_pred CCCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 243 AQPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 243 ~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
.+++.++|+||||+||||+++.||+.+.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999998753
No 322
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.70 E-value=0.00013 Score=69.44 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=30.3
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhc---CceEEEeccC
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGS 279 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~---~~~~i~~~~~ 279 (378)
|+.++..++|+||||+|||+|+..++... +...+.++..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 67889999999999999999998887543 2345555544
No 323
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.70 E-value=4.3e-05 Score=73.98 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=29.9
Q ss_pred CCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccC
Q psy6098 243 AQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGS 279 (378)
Q Consensus 243 ~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~ 279 (378)
.++..++|+||||+||||++++|++.+.++ .|.+.+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 203 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence 456789999999999999999999998764 4544443
No 324
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.69 E-value=0.00015 Score=70.24 Aligned_cols=28 Identities=32% Similarity=0.344 Sum_probs=24.6
Q ss_pred CCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 244 QPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 244 ~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
++..+++.||||+||||++..||..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999987753
No 325
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.68 E-value=8.4e-06 Score=70.62 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=27.6
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEecccccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQK 40 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~ 40 (378)
+++||||||||++|++||..++..|+. ..+++..
T Consensus 29 ~l~G~~GsGKsTl~~~La~~l~~~~i~--~d~~~~~ 62 (199)
T 3vaa_A 29 FLTGYMGAGKTTLGKAFARKLNVPFID--LDWYIEE 62 (199)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTCCEEE--HHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHcCCCEEc--chHHHHH
Confidence 478999999999999999999998854 4445433
No 326
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.68 E-value=3.1e-05 Score=65.38 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=28.5
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcCceEEEec
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 277 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~ 277 (378)
+..++|+|||||||||+++.++..++.+++.++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~ 35 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG 35 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEec
Confidence 457899999999999999999999987776644
No 327
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.67 E-value=7.5e-05 Score=69.71 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=33.1
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcc
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL 281 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l 281 (378)
++...+++.++++||||+||||++..||+.+... .+.+.+.++
T Consensus 99 ~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 99 DFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp CCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4556788899999999999999999999987543 444444444
No 328
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.67 E-value=2.4e-05 Score=66.65 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=24.6
Q ss_pred CCcceeEeCCCCCchHHHHHHHhhhcC
Q psy6098 244 QPKGVLLYGPPGTGKTLLARAVAHHTE 270 (378)
Q Consensus 244 ~~~~~ll~Gp~G~GKTtl~~~ia~~~~ 270 (378)
+|+.++|+||||||||||++.|++.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 567899999999999999999999875
No 329
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=97.67 E-value=0.00012 Score=64.39 Aligned_cols=101 Identities=23% Similarity=0.220 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccceeeccCCCceeeecCccccccc
Q psy6098 90 IEELQLIVAEKEQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDIND 169 (378)
Q Consensus 90 ~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~l~eel~~l~~~g~~~~~i~~~l~~~~~i~~~~~~~~~~~~l~~~i~~~~ 169 (378)
...+...+..+.....++....+.+...+..++++++.++.|+.+.+.++..+++..++++ +.+..+++.+.+.|+.+.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvlev~dd~~aiV~-s~Gr~~~V~Vsp~Vd~e~ 134 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLATHDDDTVDVF-TSGRKMRLTCSPNIDAAS 134 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECSSSCEEEE-CSSSCCEECBCTTSCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEcCCCEEEEE-eCCceEEEEeCCCCCHHH
Confidence 4567777777777777788888899999999999999999999999999998888887887 577889999999999999
Q ss_pred cCccchhhcccchhhhhhhcCCC
Q psy6098 170 VTPNCRVALRNESYTLHKILPNK 192 (378)
Q Consensus 170 l~~~~~~~~~~~~~~l~~i~~~~ 192 (378)
+.|+.++++ ++.+.+..++|..
T Consensus 135 LkPG~rVaL-NeSlaVVevLp~E 156 (251)
T 3m9b_A 135 LKKGQTVRL-NEALTVVEAGTFE 156 (251)
T ss_dssp SCSSCEEEE-CTTCCBCCCCCCC
T ss_pred CCCCCEEEe-CCccEEEEecCCC
Confidence 999999999 5677777776654
No 330
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.66 E-value=2.7e-05 Score=66.49 Aligned_cols=39 Identities=28% Similarity=0.485 Sum_probs=30.7
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhh-cCceEEEec
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHH-TECTFIRVS 277 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~-~~~~~i~~~ 277 (378)
++....+..++|+|+|||||||+++.++.. ++.+++..+
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 445556778999999999999999999998 676666543
No 331
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.65 E-value=2.4e-05 Score=79.63 Aligned_cols=22 Identities=27% Similarity=0.198 Sum_probs=20.4
Q ss_pred CCCCCCCChhHHHHHHHhhccC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTE 26 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~ 26 (378)
+++||||||||++||++|..+.
T Consensus 64 ll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 64 LLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp EEECCTTSSHHHHHHHHHHTSC
T ss_pred EEEeCCCCCHHHHHHHHhccCC
Confidence 6789999999999999999885
No 332
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.62 E-value=0.0001 Score=69.86 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=30.9
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhc---CceEEEeccC
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGS 279 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~---~~~~i~~~~~ 279 (378)
|+.++..++|+||||+|||||+..++... +...+.++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 68889999999999999999999888653 2345556554
No 333
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.62 E-value=2.1e-05 Score=70.77 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=32.7
Q ss_pred hcCCCC---CcceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 239 ALGIAQ---PKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 239 ~~~~~~---~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
++.+.+ ++.++|+||+||||||+++.||+.++..++-.
T Consensus 39 ~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 39 AEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp HHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred hhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 456666 88999999999999999999999998876654
No 334
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.62 E-value=0.0002 Score=70.19 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=27.3
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhhc
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT 269 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~ 269 (378)
.|+.+|+.++|.|+||+|||||+..++...
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999999998764
No 335
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.61 E-value=3.2e-05 Score=67.51 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=26.2
Q ss_pred CCCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 243 AQPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 243 ~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
.+|+.++|+||||+||||+++.|++.+.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 46788999999999999999999998865
No 336
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.60 E-value=6.1e-05 Score=67.82 Aligned_cols=41 Identities=27% Similarity=0.461 Sum_probs=34.0
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcc
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 281 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l 281 (378)
....+..++|.|||||||||+++.|+..++...+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34567789999999999999999999998866677776654
No 337
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.58 E-value=3.4e-05 Score=65.98 Aligned_cols=35 Identities=29% Similarity=0.478 Sum_probs=29.4
Q ss_pred CCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 242 IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 242 ~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
+..+..++|.|+|||||||+++.++..++..++..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 44567899999999999999999999887666554
No 338
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.57 E-value=6.9e-05 Score=66.55 Aligned_cols=40 Identities=35% Similarity=0.395 Sum_probs=29.8
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhhc---CceEEEeccC
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGS 279 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~---~~~~i~~~~~ 279 (378)
-++.+|+.++|+||||+|||||+..++... +...+.++..
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 378899999999999999999988776542 2235555443
No 339
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.57 E-value=4.3e-05 Score=69.16 Aligned_cols=48 Identities=8% Similarity=0.146 Sum_probs=34.5
Q ss_pred CCCCCCCChhHHHHHHHhhc---cCceEEEecccccccc---ccchhHHHHHHH
Q psy6098 5 LHPTWIVSGKTLLARAVAHH---TECTFIRVSGSELVQK---FIGEGSRMVREL 52 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~---~~~~~~~v~~~~~~~~---~~Gese~~~~~~ 52 (378)
+++|+||+|||++|+.++.. .|..++.++..++... |....+..++.+
T Consensus 8 vl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~ 61 (260)
T 3a4m_A 8 ILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKS 61 (260)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHH
Confidence 46899999999999999998 7888876676554432 433455555444
No 340
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.57 E-value=6.9e-05 Score=63.81 Aligned_cols=25 Identities=16% Similarity=0.037 Sum_probs=21.5
Q ss_pred CCCCCCCChhHHHHHHHhhccCceE
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTF 29 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~ 29 (378)
.++||+||||||+++.++..++..+
T Consensus 4 ~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 4 IITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcC
Confidence 4689999999999999999886543
No 341
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.56 E-value=2.6e-05 Score=66.75 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=27.3
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcCceEEEeccCcc
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 281 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~~l 281 (378)
++.++|+|||||||||+++.|++.... .+.+++.++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 457899999999999999999985433 455555433
No 342
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.56 E-value=3.9e-05 Score=65.24 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=28.8
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcCceEEEec
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 277 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~ 277 (378)
+..++|+||+||||||+++.+|..++..++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457899999999999999999999988777554
No 343
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.55 E-value=5.4e-05 Score=68.15 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=28.3
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSEL 37 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~ 37 (378)
+++||||+|||++|+.|+..++..++.+++..+
T Consensus 36 ~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 36 LLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp EEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 478999999999999999999866667777665
No 344
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.55 E-value=4.1e-05 Score=66.41 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=18.1
Q ss_pred cceeEeCCCCCchHHHHHHHh
Q psy6098 246 KGVLLYGPPGTGKTLLARAVA 266 (378)
Q Consensus 246 ~~~ll~Gp~G~GKTtl~~~ia 266 (378)
-.++++|+||+|||+++..++
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 368899999999999987764
No 345
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.54 E-value=5.5e-05 Score=64.11 Aligned_cols=36 Identities=33% Similarity=0.571 Sum_probs=30.0
Q ss_pred CCCCcceeEeCCCCCchHHHHHHHhhhcCceEEEec
Q psy6098 242 IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 277 (378)
Q Consensus 242 ~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~ 277 (378)
+..+..++|+|+|||||||+++.++..++..++..+
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 345668999999999999999999998887766553
No 346
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.53 E-value=1.6e-05 Score=66.70 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=27.5
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEecccccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQK 40 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~ 40 (378)
+++|+||||||++|+.||..+|.+|+. ..++..+
T Consensus 11 ~l~G~~GsGKSTva~~La~~lg~~~id--~D~~~~~ 44 (168)
T 1zuh_A 11 VLIGFMGSGKSSLAQELGLALKLEVLD--TDMIISE 44 (168)
T ss_dssp EEESCTTSSHHHHHHHHHHHHTCCEEE--HHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEE--ChHHHHH
Confidence 468999999999999999999998854 3444433
No 347
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.53 E-value=3.5e-05 Score=65.04 Aligned_cols=27 Identities=26% Similarity=0.116 Sum_probs=23.1
Q ss_pred CCCCCCCChhHHHHHHHhh-ccCceEEE
Q psy6098 5 LHPTWIVSGKTLLARAVAH-HTECTFIR 31 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~-~~~~~~~~ 31 (378)
++.||||+|||++|+.++. .++..++.
T Consensus 6 ~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 6 LTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred EEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 4689999999999999999 67776654
No 348
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.53 E-value=5.4e-05 Score=64.14 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=31.7
Q ss_pred CCCcceeEeCCCCCchHHHHHHHhhhc---CceEEEeccCcc
Q psy6098 243 AQPKGVLLYGPPGTGKTLLARAVAHHT---ECTFIRVSGSEL 281 (378)
Q Consensus 243 ~~~~~~ll~Gp~G~GKTtl~~~ia~~~---~~~~i~~~~~~l 281 (378)
.+|..++|.|++||||||+++.+++.+ +.+++.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 357789999999999999999999987 666777765433
No 349
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.51 E-value=2.6e-05 Score=65.92 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=24.2
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEE
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIR 31 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~ 31 (378)
+++||||||||++|++||..++..|+.
T Consensus 8 ~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 8 VFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 478999999999999999999988754
No 350
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.51 E-value=3.2e-05 Score=65.00 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.4
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEE
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFI 30 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~ 30 (378)
+++|||||||||+++.+|..++..++
T Consensus 8 ~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 8 FLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp EEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 47899999999999999999998664
No 351
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.50 E-value=3.6e-05 Score=67.61 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=24.6
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEe
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRV 32 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v 32 (378)
+++||||+||||+|+.||..++..++..
T Consensus 8 ~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 8 VLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4689999999999999999999877543
No 352
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.50 E-value=0.00043 Score=65.87 Aligned_cols=62 Identities=27% Similarity=0.379 Sum_probs=44.8
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCccccc
Q psy6098 212 MVGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSELVQK 284 (378)
Q Consensus 212 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l~~~ 284 (378)
.+.|......++.+.+... . .....++++|++||||++++++|....+.. |+.+++..+...
T Consensus 130 ~~ig~s~~~~~~~~~~~~~-------a----~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~ 193 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKI-------A----KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQE 193 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHH-------H----TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTT
T ss_pred cccccchHHHHHHhhhhhh-------h----ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChH
Confidence 4667777766666555431 1 122358999999999999999998876654 999999877543
No 353
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.49 E-value=0.00023 Score=67.04 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=26.2
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhh
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHH 268 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~ 268 (378)
++.+|..+.|+||||+|||+|+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 7889999999999999999999999875
No 354
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.49 E-value=6.2e-05 Score=62.94 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=26.7
Q ss_pred ceeEeCCCCCchHHHHHHHhhhcCceEEEec
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHTECTFIRVS 277 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~ 277 (378)
.++|.|||||||||+++.|+..++..++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5789999999999999999999887665544
No 355
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.49 E-value=2.6e-05 Score=65.33 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=26.9
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQ 39 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~ 39 (378)
+++|||||||||+|+.||+.++.+|+ +...+..
T Consensus 5 ~l~G~~GsGKsT~~~~L~~~l~~~~i--~~d~~~~ 37 (173)
T 3kb2_A 5 ILEGPDCCFKSTVAAKLSKELKYPII--KGSSFEL 37 (173)
T ss_dssp EEECSSSSSHHHHHHHHHHHHCCCEE--ECCCHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeee--cCccccc
Confidence 46899999999999999999998884 4444443
No 356
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.49 E-value=0.00012 Score=65.97 Aligned_cols=30 Identities=27% Similarity=0.190 Sum_probs=26.4
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEecc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSG 34 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~ 34 (378)
+++||||||||++|++||..++..++.++.
T Consensus 5 ~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 5 LIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 468999999999999999999998876644
No 357
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.47 E-value=4.9e-05 Score=64.51 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=26.4
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
++.+.++ ..+|+|||||||||++++|+..+++
T Consensus 21 ~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 21 VIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3455566 7899999999999999999987654
No 358
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.46 E-value=6.1e-05 Score=69.96 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=26.5
Q ss_pred CCCCcceeEeCCCCCchHHHHHHHhhhcC
Q psy6098 242 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 270 (378)
Q Consensus 242 ~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~ 270 (378)
...++.++|.||||||||||+++|++.+.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 36678999999999999999999999887
No 359
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.46 E-value=7e-05 Score=64.77 Aligned_cols=32 Identities=28% Similarity=0.548 Sum_probs=27.1
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
+..++|.|+|||||||+++.|++.++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 45799999999999999999999987655543
No 360
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.46 E-value=7.7e-05 Score=65.56 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=25.8
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcCceEE
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFI 274 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i 274 (378)
+..++|.|||||||||+++.|++.++.+++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999998875544
No 361
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.46 E-value=0.00039 Score=64.30 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=29.3
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhhc-----CceEEEeccCc
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----ECTFIRVSGSE 280 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~-----~~~~i~~~~~~ 280 (378)
-|+.+| .++++||||+|||||+-.++... +...+.++..+
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 368888 89999999999999977665332 33466666643
No 362
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.45 E-value=1.1e-05 Score=73.00 Aligned_cols=23 Identities=30% Similarity=0.225 Sum_probs=20.4
Q ss_pred CCCCCCCChhHHHHHHHhhccCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTEC 27 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~ 27 (378)
++.||||||||++|+++|+.+..
T Consensus 108 ~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 108 WLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp EEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEECCCCCCHHHHHHHHHhhhcc
Confidence 57899999999999999997654
No 363
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.45 E-value=0.00015 Score=66.55 Aligned_cols=36 Identities=36% Similarity=0.564 Sum_probs=29.4
Q ss_pred CCCcceeEeCCCCCchHHHHHHHhhhcCceEEEecc
Q psy6098 243 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 278 (378)
Q Consensus 243 ~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~ 278 (378)
..+..++|.|||||||||+++.++..+....+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 446689999999999999999999887545566665
No 364
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.44 E-value=7e-05 Score=65.70 Aligned_cols=28 Identities=11% Similarity=-0.034 Sum_probs=24.9
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEe
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRV 32 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v 32 (378)
+++|+|||||||+|+.||..++..++.+
T Consensus 9 ~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 9 ILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999887654
No 365
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.44 E-value=5.9e-05 Score=70.69 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=26.5
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEecccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSE 36 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~ 36 (378)
++.||||+|||++++.++++++..++.+++..
T Consensus 34 ~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 34 LVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp EEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 46799999999999999998876677776653
No 366
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.44 E-value=8.5e-05 Score=66.86 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=25.4
Q ss_pred CCCcceeEeCCCCCchHHHHHHHhhhcCce
Q psy6098 243 AQPKGVLLYGPPGTGKTLLARAVAHHTECT 272 (378)
Q Consensus 243 ~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~ 272 (378)
.++..++|.||+||||||+++.|+..++..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 457789999999999999999999655543
No 367
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.44 E-value=7.9e-05 Score=64.70 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=29.6
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhc-CceEEEec
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHT-ECTFIRVS 277 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~-~~~~i~~~ 277 (378)
.+.++..++|.|||||||||+++.|++.+ +..++..+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 45667789999999999999999999987 44444433
No 368
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.43 E-value=6.9e-05 Score=63.21 Aligned_cols=30 Identities=33% Similarity=0.580 Sum_probs=26.5
Q ss_pred ceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
.++|.|||||||||+++.||..++.+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 588999999999999999999998776654
No 369
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.43 E-value=6.9e-05 Score=63.69 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=26.8
Q ss_pred CCcceeEeCCCCCchHHHHHHHhhhcCceEEE
Q psy6098 244 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 275 (378)
Q Consensus 244 ~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~ 275 (378)
.|..++|.|+|||||||+++.|+..++..++.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 35679999999999999999999888765543
No 370
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.43 E-value=8.8e-05 Score=70.68 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=44.1
Q ss_pred CCCCCCCChhHHHHHHHhhccCc--eEEEecccccccccc-------------chhHHHHHHHHHHHHhcCCCCCceEEE
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTEC--TFIRVSGSELVQKFI-------------GEGSRMVRELFVMARCKGSSRGTEFFT 69 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~--~~~~v~~~~~~~~~~-------------Gese~~~~~~f~~a~~~~~~~~~ilf~ 69 (378)
++.|++||||+++||++....+. .|+.||++.+-.... |.... -.-.|+.| .|+.||+
T Consensus 156 li~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~-~~g~~~~a------~~gtlfl 228 (368)
T 3dzd_A 156 LITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTR-KKGKLELA------DQGTLFL 228 (368)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCC-EECHHHHT------TTSEEEE
T ss_pred eEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccc-cCChHhhc------CCCeEEe
Confidence 45799999999999999877653 399999997643211 10000 01234444 3678999
Q ss_pred eehhhhh
Q psy6098 70 MDVDEAI 76 (378)
Q Consensus 70 DEid~~~ 76 (378)
|||+.+-
T Consensus 229 dei~~l~ 235 (368)
T 3dzd_A 229 DEVGELD 235 (368)
T ss_dssp ETGGGSC
T ss_pred cChhhCC
Confidence 9999985
No 371
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.42 E-value=5.7e-05 Score=72.97 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=28.1
Q ss_pred hhcCCCCCcc--eeEeCCCCCchHHHHHHHhhhc
Q psy6098 238 DALGIAQPKG--VLLYGPPGTGKTLLARAVAHHT 269 (378)
Q Consensus 238 ~~~~~~~~~~--~ll~Gp~G~GKTtl~~~ia~~~ 269 (378)
-++.+.+|+. ++|+||||+|||||+++|+|..
T Consensus 33 vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4678899999 9999999999999999999973
No 372
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.42 E-value=3.8e-05 Score=65.65 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=27.7
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSEL 37 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~ 37 (378)
+++||||+||||+++++|...+...+.+++.++
T Consensus 13 ~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 13 LLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp EEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred EEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 468999999999999999988777777776554
No 373
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.41 E-value=3.1e-05 Score=65.88 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=24.2
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEE
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIR 31 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~ 31 (378)
+++|+||||||++|+.||..+|+.++.
T Consensus 6 ~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 6 VLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp EEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 378999999999999999999988754
No 374
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.41 E-value=8.3e-06 Score=72.34 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=25.9
Q ss_pred cceeEeCCCCCchHHHHHHHhhhcCce--EEEeccCcc
Q psy6098 246 KGVLLYGPPGTGKTLLARAVAHHTECT--FIRVSGSEL 281 (378)
Q Consensus 246 ~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~~~~~l 281 (378)
+.++|+||||||||||+++|++.+.+. .|.+++.++
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 567899999999999999999998876 566666554
No 375
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.40 E-value=0.00018 Score=67.21 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=26.4
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhc
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHT 269 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~ 269 (378)
++.+|..++|+||||+|||+|+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 78889999999999999999999998753
No 376
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.39 E-value=4e-05 Score=65.40 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=24.7
Q ss_pred CCCCCCCChhHHHHHHHhhc-cCceEEEe
Q psy6098 5 LHPTWIVSGKTLLARAVAHH-TECTFIRV 32 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~-~~~~~~~v 32 (378)
+++|+||||||++++.+|.. +|.+|+.+
T Consensus 14 ~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 14 LITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp EEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 57999999999999999999 78888653
No 377
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.37 E-value=0.00012 Score=64.34 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=29.5
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhcCceEE
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 274 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i 274 (378)
..-.+..++.++|.|||||||+|.++.|+..++...|
T Consensus 22 ~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 22 TDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp --CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred cchhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 3345667778999999999999999999998876544
No 378
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.37 E-value=0.0001 Score=69.28 Aligned_cols=34 Identities=26% Similarity=0.488 Sum_probs=28.0
Q ss_pred CCCCcc--eeEeCCCCCchHHHHHHHhhhcCceEEE
Q psy6098 242 IAQPKG--VLLYGPPGTGKTLLARAVAHHTECTFIR 275 (378)
Q Consensus 242 ~~~~~~--~ll~Gp~G~GKTtl~~~ia~~~~~~~i~ 275 (378)
+.+++. ++|+||||+||||++++||+.++.+++.
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 444554 9999999999999999999998876643
No 379
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.37 E-value=0.00016 Score=64.11 Aligned_cols=32 Identities=16% Similarity=0.055 Sum_probs=25.6
Q ss_pred CCCCCCCChhHHHHHHHhhc--c-------CceEEEecccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHH--T-------ECTFIRVSGSE 36 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~--~-------~~~~~~v~~~~ 36 (378)
+++||||+|||++++.+|.. + +...+.++..+
T Consensus 28 ~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 28 EMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 46899999999999999983 3 45677777655
No 380
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.36 E-value=0.0012 Score=64.00 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.6
Q ss_pred CCcceeEeCCCCCchHHHHHHHhhhcC
Q psy6098 244 QPKGVLLYGPPGTGKTLLARAVAHHTE 270 (378)
Q Consensus 244 ~~~~~ll~Gp~G~GKTtl~~~ia~~~~ 270 (378)
++..+++.||||+||||++..||..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999997654
No 381
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.35 E-value=0.00013 Score=67.11 Aligned_cols=33 Identities=27% Similarity=0.220 Sum_probs=26.5
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSEL 37 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~ 37 (378)
++.||||+||||+|+.++.+++..++.|+...+
T Consensus 37 vl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 37 LLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp EEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 468999999999999999998555566776444
No 382
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.35 E-value=0.00011 Score=63.42 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=26.0
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhhcC
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 270 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~ 270 (378)
++..-+|+.++|+||+|+|||||++.|++...
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44555788899999999999999999998765
No 383
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.35 E-value=0.00011 Score=66.17 Aligned_cols=32 Identities=31% Similarity=0.466 Sum_probs=27.9
Q ss_pred ceeEeCCCCCchHHHHHHHhhhcCceEEEecc
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 278 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~ 278 (378)
.++|.|||||||||+++.||+.++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 57899999999999999999998877776654
No 384
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.35 E-value=0.00013 Score=68.20 Aligned_cols=28 Identities=25% Similarity=0.105 Sum_probs=22.9
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEecc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSG 34 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~ 34 (378)
++.||+|+|||++++.+++..+ ++.+++
T Consensus 35 ~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~ 62 (350)
T 2qen_A 35 LLLGIRRVGKSSLLRAFLNERP--GILIDC 62 (350)
T ss_dssp EEECCTTSSHHHHHHHHHHHSS--EEEEEH
T ss_pred EEECCCcCCHHHHHHHHHHHcC--cEEEEe
Confidence 4689999999999999999887 444443
No 385
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.35 E-value=0.0001 Score=62.54 Aligned_cols=32 Identities=25% Similarity=0.483 Sum_probs=27.6
Q ss_pred cceeEeCCCCCchHHHHHHHhhhcCceEEEec
Q psy6098 246 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 277 (378)
Q Consensus 246 ~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~ 277 (378)
..++|.|+|||||||+++.|+..++.+++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 36899999999999999999999887766544
No 386
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.35 E-value=9e-05 Score=64.07 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=25.4
Q ss_pred ceeEeCCCCCchHHHHHHHhhhcCceEEEec
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHTECTFIRVS 277 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~ 277 (378)
.++|.|+|||||||+++.|++ ++..++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 589999999999999999999 776655543
No 387
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.34 E-value=0.00011 Score=63.70 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=23.8
Q ss_pred ceeEeCCCCCchHHHHHHHhhhcCceEEE
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHTECTFIR 275 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~ 275 (378)
.++|.|||||||||+++.+++ ++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 589999999999999999999 6655543
No 388
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.33 E-value=0.00011 Score=62.93 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=28.2
Q ss_pred CCcceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 244 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 244 ~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
++..++|.|+|||||||+++.++..++..++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 456899999999999999999999888766544
No 389
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.33 E-value=0.0011 Score=59.84 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=29.0
Q ss_pred CcceeEeCCCCCchHHHHHHHhhh---cCceEEEeccCcc
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHH---TECTFIRVSGSEL 281 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~---~~~~~i~~~~~~l 281 (378)
+..++|.|+|||||||+++.|+.. .+..++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 457899999999999999999987 5555665555433
No 390
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.32 E-value=0.00013 Score=70.52 Aligned_cols=102 Identities=22% Similarity=0.230 Sum_probs=59.4
Q ss_pred hhcCCCCCcceeEeCCCCCchHHHHHHHhhhc-----------Cce--EEEecc-Ccc-cccccc----------hhHHH
Q psy6098 238 DALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----------ECT--FIRVSG-SEL-VQKFIG----------EGSRM 292 (378)
Q Consensus 238 ~~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~-----------~~~--~i~~~~-~~l-~~~~~~----------~~~~~ 292 (378)
-++.++.+..++|+|+||+|||||+++|++.. .+. .+.++. ..+ +...++ .....
T Consensus 150 i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~f 229 (416)
T 1udx_A 150 LRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEF 229 (416)
T ss_dssp EEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHH
T ss_pred eeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHH
Confidence 35667788899999999999999999999872 222 333332 111 000111 11111
Q ss_pred HHHHHHHhh--hhhhhhccCchhhhhHhhhhhhhhhccccc--CCCeEEEEecCc
Q psy6098 293 VRELFVMAS--LKKLAFAHHPLLFWSLLTILTNTIVCNFRE--HAPSIIFMDEID 343 (378)
Q Consensus 293 v~~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~vl~lDEid 343 (378)
.+ ..+.+. +..+... ...+..++.+++++...+++ ..|.||++-=+|
T Consensus 230 l~-~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlD 280 (416)
T 1udx_A 230 LR-HIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 280 (416)
T ss_dssp HH-HHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCT
T ss_pred HH-HHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCC
Confidence 11 000010 1111111 45677899999999887765 789999985444
No 391
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.32 E-value=0.00011 Score=62.58 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=27.1
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
+..++|.|+|||||||+++.++..++..++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 45789999999999999999999887665543
No 392
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.32 E-value=0.00013 Score=64.08 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=28.1
Q ss_pred CCcceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 244 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 244 ~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
++..++|.|+|||||||+++.|+..++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 356799999999999999999999988766554
No 393
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.31 E-value=5.4e-05 Score=64.18 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=25.0
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEe
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRV 32 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v 32 (378)
+++||||+|||++|+.+|..++..++.+
T Consensus 15 ~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 15 LLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp EEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 3689999999999999999999888654
No 394
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.31 E-value=0.00014 Score=63.08 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=26.1
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcC
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTE 270 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~ 270 (378)
.+.++..++|+|||||||||+++.|+..+.
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356788899999999999999999998874
No 395
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.30 E-value=0.00014 Score=62.85 Aligned_cols=33 Identities=36% Similarity=0.468 Sum_probs=28.0
Q ss_pred CCcceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 244 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 244 ~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
.+..++|.|+|||||||+++.|+..++..++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 345799999999999999999999888766654
No 396
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.30 E-value=0.0001 Score=62.75 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.5
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcC
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTE 270 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~ 270 (378)
+..++|.|||||||||+++.|+..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999776
No 397
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.30 E-value=0.00013 Score=60.95 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=24.9
Q ss_pred ceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
.++|.|||||||||+++.+ ..++..++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 7777776654
No 398
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.29 E-value=5.3e-05 Score=65.51 Aligned_cols=28 Identities=21% Similarity=-0.021 Sum_probs=24.4
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEe
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRV 32 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v 32 (378)
+++||||||||++|+.||..++..++.+
T Consensus 24 ~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 24 LLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4679999999999999999999877543
No 399
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.29 E-value=5.8e-05 Score=63.33 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=24.3
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEE
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIR 31 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~ 31 (378)
+++|+||||||++|+.||..++.+++.
T Consensus 6 ~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 6 FMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp EEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 478999999999999999999988754
No 400
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.28 E-value=6.5e-05 Score=63.87 Aligned_cols=32 Identities=16% Similarity=0.088 Sum_probs=25.8
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEecccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELV 38 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~ 38 (378)
+++|||||||||+|+.||+.++..++ +..+++
T Consensus 8 ~l~G~~GsGKST~~~~La~~l~~~~i--~~d~~~ 39 (186)
T 3cm0_A 8 IFLGPPGAGKGTQASRLAQELGFKKL--STGDIL 39 (186)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTCEEE--CHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEe--cHHHHH
Confidence 47899999999999999999997764 443444
No 401
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.28 E-value=0.00014 Score=61.14 Aligned_cols=29 Identities=34% Similarity=0.422 Sum_probs=23.5
Q ss_pred cceeEeCCCCCchHHHHHHHhh-hcCceEE
Q psy6098 246 KGVLLYGPPGTGKTLLARAVAH-HTECTFI 274 (378)
Q Consensus 246 ~~~ll~Gp~G~GKTtl~~~ia~-~~~~~~i 274 (378)
..++|.|||||||||+++.|+. .++..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 4689999999999999999998 4544333
No 402
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.28 E-value=2.5e-05 Score=73.46 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=38.3
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEE------------------eccccccccccchhHHHHHHHHHH
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIR------------------VSGSELVQKFIGEGSRMVRELFVM 55 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~------------------v~~~~~~~~~~Gese~~~~~~f~~ 55 (378)
+++||||||||+++++||..++..|+. ++..+.+.+..|+ .+.++|+.
T Consensus 28 ~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g~---~i~~if~~ 93 (359)
T 2ga8_A 28 ILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPN---KVAEMIEN 93 (359)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCHH---HHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhCc---cHHHHHHH
Confidence 478999999999999999999998866 5566677777666 45667744
No 403
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.28 E-value=0.00015 Score=61.78 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=27.3
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
+..++|.|+|||||||+++.++..++..++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 45799999999999999999999887665544
No 404
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.27 E-value=6.6e-05 Score=62.75 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=23.8
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEe
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRV 32 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v 32 (378)
+++||||+|||++|+.| ..+|..++.+
T Consensus 5 ~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 5 LITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 47899999999999999 8899887654
No 405
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.27 E-value=5.3e-05 Score=64.92 Aligned_cols=28 Identities=14% Similarity=0.032 Sum_probs=24.6
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEe
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRV 32 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v 32 (378)
+++||||||||++|+.||..++..++..
T Consensus 13 ~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 13 FVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp EEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4789999999999999999999887543
No 406
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.26 E-value=4.9e-05 Score=64.96 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=24.3
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEE
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIR 31 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~ 31 (378)
+++|+||+||||+|+.++..++..++.
T Consensus 9 ~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 9 IVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 468999999999999999999987765
No 407
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.26 E-value=0.00014 Score=64.14 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=27.7
Q ss_pred CCcceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 244 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 244 ~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
.+..++|.|||||||||+++.|+..++..++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 456799999999999999999999888766644
No 408
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.25 E-value=0.0002 Score=67.64 Aligned_cols=70 Identities=13% Similarity=0.040 Sum_probs=43.7
Q ss_pred CCCCCCCChhHHHHHHHhhcc---CceEEEecccccccc----ccc------------hhHHHHHHHHHHHHhcCCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT---ECTFIRVSGSELVQK----FIG------------EGSRMVRELFVMARCKGSSRGT 65 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~---~~~~~~v~~~~~~~~----~~G------------ese~~~~~~f~~a~~~~~~~~~ 65 (378)
++.||||||||++|..+|..+ +..++.++..+-... ..| ..++.+..+...++...|.
T Consensus 65 ~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~--- 141 (349)
T 2zr9_A 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALD--- 141 (349)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS---
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCC---
Confidence 367999999999999998654 445666665442221 122 1223333333333344566
Q ss_pred eEEEeehhhhhh
Q psy6098 66 EFFTMDVDEAIK 77 (378)
Q Consensus 66 ilf~DEid~~~~ 77 (378)
++++|++.++..
T Consensus 142 lIVIDsl~~l~~ 153 (349)
T 2zr9_A 142 IIVIDSVAALVP 153 (349)
T ss_dssp EEEEECGGGCCC
T ss_pred EEEEcChHhhcc
Confidence 999999999984
No 409
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.25 E-value=9.6e-05 Score=64.05 Aligned_cols=31 Identities=19% Similarity=0.138 Sum_probs=25.0
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEecccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELV 38 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~ 38 (378)
.++|||||||||+++.+|. +|..++ +..++.
T Consensus 6 ~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~~ 36 (206)
T 1jjv_A 6 GLTGGIGSGKTTIANLFTD-LGVPLV--DADVVA 36 (206)
T ss_dssp EEECSTTSCHHHHHHHHHT-TTCCEE--EHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH-CCCccc--chHHHH
Confidence 3789999999999999998 887774 444443
No 410
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.25 E-value=0.00015 Score=60.64 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=27.6
Q ss_pred ceeEeCCCCCchHHHHHHHhhhcCceEEEec
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHTECTFIRVS 277 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~ 277 (378)
+++|.|++||||||+++.|+..++.+++..+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 7899999999999999999999988776543
No 411
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.24 E-value=7.1e-05 Score=63.90 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=25.9
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEecccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELV 38 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~ 38 (378)
+++|+||||||++|+.+|..++..++ +..+++
T Consensus 7 ~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~ 38 (196)
T 1tev_A 7 FVLGGPGAGKGTQCARIVEKYGYTHL--SAGELL 38 (196)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHH
Confidence 46899999999999999999998764 444444
No 412
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.24 E-value=6.9e-05 Score=65.50 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=24.3
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEe
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRV 32 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v 32 (378)
+++||||+||||+|+.||+.++..++.+
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 4 VLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 4789999999999999999998777543
No 413
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.23 E-value=0.00015 Score=62.16 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=27.4
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
+..++|.|+|||||||+++.|+..++..++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45799999999999999999999888665543
No 414
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.23 E-value=0.00014 Score=61.45 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=22.8
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcCceEE
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFI 274 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i 274 (378)
+..++|.|+|||||||+++.++..++..++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 457899999999999999999998887766
No 415
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.22 E-value=9.2e-05 Score=63.84 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=33.5
Q ss_pred CCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHH
Q psy6098 6 HPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELF 53 (378)
Q Consensus 6 ~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f 53 (378)
++|+|||||||+|+.+++.+|+++ ++..++.....+..-+.+.+.|
T Consensus 17 ltG~~GSGKSTva~~L~~~lg~~v--id~D~~~~~~~~~~~~~i~~~f 62 (192)
T 2grj_A 17 VTGKIGTGKSTVCEILKNKYGAHV--VNVDRIGHEVLEEVKEKLVELF 62 (192)
T ss_dssp EECSTTSSHHHHHHHHHHHHCCEE--EEHHHHHHHHHHHTHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCEE--EECcHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999889887 5555665544444444444444
No 416
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.22 E-value=0.00016 Score=62.66 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=25.9
Q ss_pred CCCCcceeEeCCCCCchHHHHHHHhhhcC
Q psy6098 242 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 270 (378)
Q Consensus 242 ~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~ 270 (378)
..++..++|.||+||||||+++.|++.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45678899999999999999999999874
No 417
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.22 E-value=0.00018 Score=60.20 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=26.4
Q ss_pred ceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
.++|.|++||||||+++.++..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 689999999999999999999888776654
No 418
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.21 E-value=0.00025 Score=61.75 Aligned_cols=32 Identities=22% Similarity=-0.016 Sum_probs=26.1
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEecccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSE 36 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~ 36 (378)
++.||||+|||++++.+|...+..++.++..+
T Consensus 24 ~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 24 QVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp EEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred EEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 46899999999999999985566777777654
No 419
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.20 E-value=6.8e-05 Score=64.37 Aligned_cols=32 Identities=22% Similarity=0.108 Sum_probs=25.8
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEecccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELV 38 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~ 38 (378)
+++||||||||++|+.||..++..++ +..+++
T Consensus 16 ~l~G~~GsGKsT~a~~L~~~l~~~~i--~~d~~~ 47 (199)
T 2bwj_A 16 FIIGGPGSGKGTQCEKLVEKYGFTHL--STGELL 47 (199)
T ss_dssp EEEECTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHH
Confidence 46899999999999999999997664 444444
No 420
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.20 E-value=0.00014 Score=64.33 Aligned_cols=30 Identities=30% Similarity=0.272 Sum_probs=26.7
Q ss_pred hcCCCCCcceeEeCCCCCchHHHHHHHhhh
Q psy6098 239 ALGIAQPKGVLLYGPPGTGKTLLARAVAHH 268 (378)
Q Consensus 239 ~~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~ 268 (378)
.....+|..++|.||+||||||+++.|++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345677889999999999999999999998
No 421
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.19 E-value=8.4e-05 Score=65.95 Aligned_cols=28 Identities=14% Similarity=-0.045 Sum_probs=24.6
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEe
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRV 32 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v 32 (378)
+++|+||||||++|+.||..++..++..
T Consensus 20 ~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 20 VLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4689999999999999999999877543
No 422
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.19 E-value=6.7e-05 Score=63.90 Aligned_cols=22 Identities=9% Similarity=-0.049 Sum_probs=20.4
Q ss_pred CCCCCCCChhHHHHHHHhhccC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTE 26 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~ 26 (378)
++.||||+||||+|+.||..++
T Consensus 7 ~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 7 VVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEECCTTSCHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999887
No 423
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.19 E-value=0.00024 Score=61.29 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=27.8
Q ss_pred CCcceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 244 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 244 ~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
.+..++|.|++||||||+++.|+..++..++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 345789999999999999999999887766554
No 424
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.18 E-value=7.9e-05 Score=65.05 Aligned_cols=28 Identities=18% Similarity=0.086 Sum_probs=24.3
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEe
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRV 32 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v 32 (378)
+++||||+||||+|+.||..++..++.+
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 4 VLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 4789999999999999999999877543
No 425
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.18 E-value=7.5e-05 Score=63.23 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=20.0
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEE
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFI 30 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~ 30 (378)
+++|+||||||++|+.||+.++..++
T Consensus 9 ~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 9 WINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46899999999999999999998876
No 426
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.18 E-value=8.1e-05 Score=65.68 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=24.5
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEe
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRV 32 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v 32 (378)
+++||||||||++|+.||..++..++.+
T Consensus 11 ~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 11 VIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp EEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred EEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 4789999999999999999999877543
No 427
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.18 E-value=0.00013 Score=62.83 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=24.8
Q ss_pred CCCCCCCChhHHHHHHHhhcc-CceEEEec
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT-ECTFIRVS 33 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~-~~~~~~v~ 33 (378)
+++|||||||||+++.||+.+ |.+++.+.
T Consensus 8 ~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 8 VFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp EEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 478999999999999999999 57776654
No 428
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.17 E-value=0.00018 Score=66.55 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=26.3
Q ss_pred CCcceeEeCCCCCchHHHHHHHhhhcCce--EEEe
Q psy6098 244 QPKGVLLYGPPGTGKTLLARAVAHHTECT--FIRV 276 (378)
Q Consensus 244 ~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~--~i~~ 276 (378)
.++.++|.||||+|||||+++|+|...+. .|.+
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 46789999999999999999999998876 5555
No 429
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.16 E-value=0.00014 Score=76.16 Aligned_cols=66 Identities=14% Similarity=0.012 Sum_probs=54.3
Q ss_pred hhhhhhcc-CchhhhhHhhhhhhhhhccccc--CCC--eEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCC
Q psy6098 302 LKKLAFAH-HPLLFWSLLTILTNTIVCNFRE--HAP--SIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEA 376 (378)
Q Consensus 302 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~p--~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~ 376 (378)
+..+++.. ........||+|++|++.+|++ ..| .|++||| ||+++|+.....+.++|+.|...|.
T Consensus 363 L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDE----------PT~~Ld~~~~~~L~~~l~~L~~~G~ 432 (842)
T 2vf7_A 363 LLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDE----------PSAGLHPADTEALLSALENLKRGGN 432 (842)
T ss_dssp HHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEEC----------TTTTCCGGGHHHHHHHHHHHHTTTC
T ss_pred HHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeC----------ccccCCHHHHHHHHHHHHHHHHcCC
Confidence 33444543 3567788999999999999988 555 5999999 9999999999999999999987765
Q ss_pred C
Q psy6098 377 T 377 (378)
Q Consensus 377 ~ 377 (378)
|
T Consensus 433 T 433 (842)
T 2vf7_A 433 S 433 (842)
T ss_dssp E
T ss_pred E
Confidence 4
No 430
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.16 E-value=8.6e-05 Score=61.99 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=27.1
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEecccccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQK 40 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~ 40 (378)
+++|+||+|||++|+.|+..++..++. ..++...
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~l~~~~i~--~d~~~~~ 37 (168)
T 2pt5_A 4 YLIGFMCSGKSTVGSLLSRSLNIPFYD--VDEEVQK 37 (168)
T ss_dssp EEESCTTSCHHHHHHHHHHHHTCCEEE--HHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEE--CcHHHHH
Confidence 478999999999999999999988754 4444433
No 431
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.16 E-value=0.00031 Score=60.47 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=27.4
Q ss_pred CCcceeEeCCCCCchHHHHHHHhhhcC-ceEEEe
Q psy6098 244 QPKGVLLYGPPGTGKTLLARAVAHHTE-CTFIRV 276 (378)
Q Consensus 244 ~~~~~ll~Gp~G~GKTtl~~~ia~~~~-~~~i~~ 276 (378)
.|..++|.|++||||||+++.++..++ .+++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 466899999999999999999999883 455544
No 432
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.16 E-value=0.00038 Score=60.99 Aligned_cols=21 Identities=14% Similarity=0.009 Sum_probs=18.1
Q ss_pred CCCCCCCChhHHHHHHHhhcc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT 25 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~ 25 (378)
+++||||+|||++++.+|..+
T Consensus 27 ~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 27 ALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999654
No 433
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.15 E-value=8.2e-05 Score=63.38 Aligned_cols=28 Identities=11% Similarity=-0.032 Sum_probs=24.4
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEe
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRV 32 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v 32 (378)
+++|+||||||++|+.+|..++..++..
T Consensus 10 ~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 10 FVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4789999999999999999999777543
No 434
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.15 E-value=0.00011 Score=63.54 Aligned_cols=28 Identities=7% Similarity=-0.032 Sum_probs=24.3
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEe
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRV 32 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v 32 (378)
+++|+||||||++|+.||+.+|..++..
T Consensus 19 ~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 19 FVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred EEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 4679999999999999999999877553
No 435
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.15 E-value=0.00024 Score=63.55 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=28.4
Q ss_pred CCCcceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 243 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 243 ~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
.++..++|.|||||||||+++.|+..++...+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3566899999999999999999999887665544
No 436
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.15 E-value=0.00016 Score=63.55 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=26.8
Q ss_pred CCcceeEeCCCCCchHHHHHHHhhhcCceEEE
Q psy6098 244 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 275 (378)
Q Consensus 244 ~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~ 275 (378)
.+..++|.|||||||||+++.|+..++..++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 34578999999999999999999988865443
No 437
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.14 E-value=0.00024 Score=64.20 Aligned_cols=27 Identities=41% Similarity=0.700 Sum_probs=23.3
Q ss_pred CCCcceeEeCCCCCchHHHHHHHhhhc
Q psy6098 243 AQPKGVLLYGPPGTGKTLLARAVAHHT 269 (378)
Q Consensus 243 ~~~~~~ll~Gp~G~GKTtl~~~ia~~~ 269 (378)
++..+++|+||||||||+++++||..+
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 334579999999999999999999864
No 438
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.14 E-value=0.00011 Score=63.63 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=23.9
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEE
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIR 31 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~ 31 (378)
+++||||+||||+|+.|+..+|..++.
T Consensus 22 ~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 22 VVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp EEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 478999999999999999999977754
No 439
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.14 E-value=0.00021 Score=60.88 Aligned_cols=33 Identities=21% Similarity=0.071 Sum_probs=24.9
Q ss_pred CCCCCCCChhHHHHHHHhhccCc---eEEEeccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTEC---TFIRVSGSEL 37 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~---~~~~v~~~~~ 37 (378)
+++|+||+|||++++.+|..++. .+..+++..+
T Consensus 17 ~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 17 WLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 47899999999999999998753 3444554433
No 440
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.14 E-value=0.00016 Score=62.53 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=26.0
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEecccccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQK 40 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~ 40 (378)
.++|||||||||+++.+|+ +|+.++. ..++...
T Consensus 5 ~i~G~~GsGKSTl~~~L~~-~g~~~i~--~d~~~~~ 37 (204)
T 2if2_A 5 GLTGNIGCGKSTVAQMFRE-LGAYVLD--ADKLIHS 37 (204)
T ss_dssp EEEECTTSSHHHHHHHHHH-TTCEEEE--HHHHHHG
T ss_pred EEECCCCcCHHHHHHHHHH-CCCEEEE--ccHHHHH
Confidence 4689999999999999999 8877754 4445443
No 441
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.14 E-value=0.00022 Score=62.22 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=25.6
Q ss_pred ceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
.++|.|||||||||+++.|+..++...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999887665544
No 442
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.13 E-value=0.00022 Score=62.62 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=27.0
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQ 39 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~ 39 (378)
++.||||+||+|+|+.||+.+|... ++..|++-
T Consensus 33 ~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR 65 (217)
T 3umf_A 33 FVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLR 65 (217)
T ss_dssp EEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHH
Confidence 4679999999999999999998655 56666664
No 443
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.13 E-value=0.00028 Score=61.51 Aligned_cols=29 Identities=31% Similarity=0.550 Sum_probs=24.8
Q ss_pred ceeEeCCCCCchHHHHHHHhhhcCceEEE
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHTECTFIR 275 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~ 275 (378)
.++|.|||||||+|.++.|+..++...|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 47899999999999999999988765543
No 444
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.13 E-value=0.00034 Score=59.16 Aligned_cols=51 Identities=8% Similarity=0.019 Sum_probs=43.7
Q ss_pred hhhhHhhhhhhhhhccccc------CCCeEEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccC
Q psy6098 313 LFWSLLTILTNTIVCNFRE------HAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 373 (378)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~------~~p~vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~ 373 (378)
..+..+|+|++|++.+++. .+|++++||| |++++|+.....+.++|.++..
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDE----------p~a~LD~~~~~~~~~~l~~~~~ 116 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDE----------IDAHLDDANVKRVADLIKESSK 116 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECC----------CccCCCHHHHHHHHHHHHHhcc
Confidence 4466789999999998887 3468999999 9999999999999999988754
No 445
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.12 E-value=0.00022 Score=62.12 Aligned_cols=30 Identities=30% Similarity=0.493 Sum_probs=25.7
Q ss_pred ceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
.++|.|||||||||+++.++..++...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999887665544
No 446
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.12 E-value=0.0002 Score=62.79 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=27.6
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
+..++|.|+|||||||+++.|+..++..++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 34689999999999999999999988776654
No 447
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.12 E-value=0.00024 Score=59.15 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=26.2
Q ss_pred ceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
.++|.|++||||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 478999999999999999999888776654
No 448
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.11 E-value=0.00028 Score=65.74 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=24.2
Q ss_pred CCcceeEeCCCCCchHHHHHHHhhhcC
Q psy6098 244 QPKGVLLYGPPGTGKTLLARAVAHHTE 270 (378)
Q Consensus 244 ~~~~~ll~Gp~G~GKTtl~~~ia~~~~ 270 (378)
.+-.++|.|||||||||+++.|++++.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345799999999999999999999986
No 449
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.11 E-value=6.6e-05 Score=65.99 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=26.6
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQ 39 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~ 39 (378)
+++||||+||||+|+.||..++..+ ++..+++.
T Consensus 9 ~l~G~~GsGKsT~~~~La~~l~~~~--i~~d~~~~ 41 (222)
T 1zak_A 9 MISGAPASGKGTQCELIKTKYQLAH--ISAGDLLR 41 (222)
T ss_dssp EEEESTTSSHHHHHHHHHHHHCCEE--CCHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCce--ecHHHHHH
Confidence 4689999999999999999999765 44445543
No 450
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.11 E-value=0.0003 Score=62.34 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=27.8
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
+..++|.|+|||||||+++.|+..++..++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45799999999999999999999988766654
No 451
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.10 E-value=0.00029 Score=60.57 Aligned_cols=29 Identities=14% Similarity=0.478 Sum_probs=25.3
Q ss_pred ceeEeCCCCCchHHHHHHHhhhcCceEEE
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHTECTFIR 275 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~ 275 (378)
.++|.|++||||||+++.|+..++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999998876543
No 452
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.10 E-value=0.00014 Score=61.18 Aligned_cols=32 Identities=31% Similarity=0.342 Sum_probs=25.7
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEecccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELV 38 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~ 38 (378)
+++||||+|||++++.++..+|..+ +++.++.
T Consensus 12 ~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~~ 43 (175)
T 1knq_A 12 VLMGVSGSGKSAVASEVAHQLHAAF--LDGDFLH 43 (175)
T ss_dssp EEECSTTSCHHHHHHHHHHHHTCEE--EEGGGGC
T ss_pred EEEcCCCCCHHHHHHHHHHhhCcEE--EeCcccc
Confidence 4789999999999999999988665 4454443
No 453
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.10 E-value=0.0001 Score=62.33 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=26.7
Q ss_pred cceeEeCCCCCchHHHHHHHhhhcCce-----EEEeccCcc
Q psy6098 246 KGVLLYGPPGTGKTLLARAVAHHTECT-----FIRVSGSEL 281 (378)
Q Consensus 246 ~~~ll~Gp~G~GKTtl~~~ia~~~~~~-----~i~~~~~~l 281 (378)
+.++|.||+|||||||++.|++.+.+. .|.+++.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCccc
Confidence 468999999999999999999997643 677776553
No 454
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.10 E-value=0.00019 Score=62.00 Aligned_cols=33 Identities=21% Similarity=0.130 Sum_probs=26.3
Q ss_pred CCCCCCCChhHHHHHHHhhcc---CceEEEeccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT---ECTFIRVSGSEL 37 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~---~~~~~~v~~~~~ 37 (378)
.++|||||||||++++||..+ |...+.+++.++
T Consensus 29 ~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 29 WVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 368999999999999999998 555456666555
No 455
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.10 E-value=0.00013 Score=65.68 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=25.1
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEe
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRV 32 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v 32 (378)
+++||||||||++++.+|..+|..|+..
T Consensus 52 ~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 52 YLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp EEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 4789999999999999999999988653
No 456
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.09 E-value=0.00049 Score=65.00 Aligned_cols=70 Identities=13% Similarity=-0.011 Sum_probs=44.9
Q ss_pred CCCCCCCChhHHHHHHHhhcc---CceEEEecccccccc----------------ccchhHHHHHHHHHHHHhcCCCCCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT---ECTFIRVSGSELVQK----------------FIGEGSRMVRELFVMARCKGSSRGT 65 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~---~~~~~~v~~~~~~~~----------------~~Gese~~~~~~f~~a~~~~~~~~~ 65 (378)
++.||||||||+++..+|..+ +..+++++..+.... ..-..+..+..+....+...+.
T Consensus 65 ~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d--- 141 (356)
T 3hr8_A 65 EIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD--- 141 (356)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS---
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC---
Confidence 357999999999999999774 456677777653221 0112233333333333334555
Q ss_pred eEEEeehhhhhh
Q psy6098 66 EFFTMDVDEAIK 77 (378)
Q Consensus 66 ilf~DEid~~~~ 77 (378)
++++|++.++++
T Consensus 142 lvVIDSi~~l~~ 153 (356)
T 3hr8_A 142 LIVVDSVAALVP 153 (356)
T ss_dssp EEEEECTTTCCC
T ss_pred eEEehHhhhhcC
Confidence 999999998875
No 457
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.09 E-value=0.00042 Score=67.35 Aligned_cols=51 Identities=20% Similarity=0.087 Sum_probs=34.4
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhhhcCCCCCcceeEeCCCCCchHHHHHHH-hhhcCce
Q psy6098 213 VGGLDNQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV-AHHTECT 272 (378)
Q Consensus 213 i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~i-a~~~~~~ 272 (378)
|.|++++|..|.-.+.-.... +...-+++|.|+||+ ||+++|++ ++.+.+.
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~ 266 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRG 266 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCe
Confidence 778888776654433221000 112237999999999 99999999 8877554
No 458
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.09 E-value=0.00015 Score=62.67 Aligned_cols=30 Identities=30% Similarity=0.261 Sum_probs=24.8
Q ss_pred CCCCCCChhHHHHHHHhhccCceEEEeccccc
Q psy6098 6 HPTWIVSGKTLLARAVAHHTECTFIRVSGSEL 37 (378)
Q Consensus 6 ~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~ 37 (378)
++|||||||||++++++..+|..+ +++.++
T Consensus 34 l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 34 VMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp EECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred EECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 689999999999999999997655 455554
No 459
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.08 E-value=0.00016 Score=68.89 Aligned_cols=58 Identities=21% Similarity=-0.047 Sum_probs=39.7
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccccccchhHHHHHHHHHHHHhcCCCCCceEEEeehhhhhh
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMARCKGSSRGTEFFTMDVDEAIK 77 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~~~~Gese~~~~~~f~~a~~~~~~~~~ilf~DEid~~~~ 77 (378)
++.||||||||+++++++..++..++.+..++-- ....+..+| ... ++|+|+++.++.
T Consensus 173 ~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~~~lg~~~------q~~---~~l~dd~~~~~~ 230 (377)
T 1svm_A 173 LFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LNFELGVAI------DQF---LVVFEDVKGTGG 230 (377)
T ss_dssp EEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HHHHHGGGT------TCS---CEEETTCCCSTT
T ss_pred EEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HHHHHHHhc------chh---HHHHHHHHHHHH
Confidence 4689999999999999999988877765544311 001122222 122 679999999876
No 460
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.08 E-value=0.00033 Score=62.14 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=25.8
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcCceEE
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFI 274 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i 274 (378)
+..++|.|||||||||+++.|+..++..++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 457999999999999999999998875543
No 461
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.08 E-value=0.00032 Score=59.96 Aligned_cols=30 Identities=17% Similarity=-0.044 Sum_probs=24.8
Q ss_pred CCCCCCCChhHHHHHHHhhcc---CceEEEecc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT---ECTFIRVSG 34 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~---~~~~~~v~~ 34 (378)
++.|||||||||+++.+++.+ |..++....
T Consensus 4 ~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 4 TFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 468999999999999999998 888875543
No 462
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.07 E-value=7.8e-05 Score=64.56 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=22.4
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEE
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFI 30 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~ 30 (378)
++.||||||||++|.++|+.+.-.++
T Consensus 62 li~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 62 VFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp EEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCee
Confidence 57899999999999999999865543
No 463
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.07 E-value=0.00015 Score=62.41 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=23.5
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEE
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFI 30 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~ 30 (378)
+++|+|||||||+++.||+.++..++
T Consensus 4 ~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 4 AIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEECCCccCHHHHHHHHHHhcCCcEE
Confidence 47899999999999999999998665
No 464
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.06 E-value=0.00031 Score=59.75 Aligned_cols=30 Identities=37% Similarity=0.434 Sum_probs=26.1
Q ss_pred CCCCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 242 IAQPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 242 ~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
..++..++|.|+|||||||+++.++..+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 346778999999999999999999988753
No 465
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.06 E-value=0.00067 Score=63.14 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=25.5
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhh
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHH 268 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~ 268 (378)
++.++..++|+||||+|||+|+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6888999999999999999999998854
No 466
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.06 E-value=0.00038 Score=61.72 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=28.0
Q ss_pred CCCCcceeEeCCCCCchHHHHHHHhhhcCceEEE
Q psy6098 242 IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 275 (378)
Q Consensus 242 ~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~ 275 (378)
-.++..++|.|++||||||+++.|++.++.+++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 3456789999999999999999999988765443
No 467
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.06 E-value=0.00016 Score=62.96 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=26.4
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEecccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELV 38 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~ 38 (378)
++.||||+||+|+|+.||+.+|... ++..|++
T Consensus 4 il~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 4 VFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 5789999999999999999998765 5555555
No 468
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.04 E-value=0.0003 Score=74.29 Aligned_cols=64 Identities=13% Similarity=0.069 Sum_probs=53.1
Q ss_pred hhhhcc-CchhhhhHhhhhhhhhhccccc--CCCe--EEEEecCccccCCCCCCCCCCChHHHHHHHHHHHhccCCCCC
Q psy6098 304 KLAFAH-HPLLFWSLLTILTNTIVCNFRE--HAPS--IIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEAT 377 (378)
Q Consensus 304 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~p~--vl~lDEid~~~~~r~~~~~~~d~~~~~~~~~lL~~l~~~~~~ 377 (378)
.+.+.. .....+..||+|++||+.+|++ ..|. |++||| |++++|+.....+.++|+++...|.|
T Consensus 450 ~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDE----------PT~gLD~~~~~~l~~~L~~L~~~G~T 518 (916)
T 3pih_A 450 DVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDE----------PTIGLHPRDTERLIKTLKKLRDLGNT 518 (916)
T ss_dssp TTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEEC----------TTTTCCGGGHHHHHHHHHHTTTTTCE
T ss_pred HcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEEC----------CccCCCHHHHHHHHHHHHHHHhcCCE
Confidence 344432 3467788999999999999998 4444 999999 99999999999999999999877654
No 469
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.04 E-value=0.0013 Score=60.64 Aligned_cols=26 Identities=38% Similarity=0.470 Sum_probs=23.9
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcC
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTE 270 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~ 270 (378)
+..+++.|++|+||||++..+|+.+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 77899999999999999999998874
No 470
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.03 E-value=0.0003 Score=60.83 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=24.2
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
+..++|.|+|||||||+++.|+..++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 457899999999999999999998765
No 471
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.03 E-value=0.00011 Score=64.09 Aligned_cols=28 Identities=18% Similarity=0.051 Sum_probs=24.3
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEe
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRV 32 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v 32 (378)
+++||||+||||+|+.||+.++..++.+
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 4 ILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 5789999999999999999998776443
No 472
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.02 E-value=0.0034 Score=61.13 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=25.9
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhh
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHH 268 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~ 268 (378)
|+.+|..++|.|+||+|||+|+..+|..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 7999999999999999999999988864
No 473
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.01 E-value=0.00022 Score=62.58 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=23.4
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEE
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFI 30 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~ 30 (378)
.++|||||||||+++.++..+|.+++
T Consensus 9 ~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 9 TIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 37899999999999999999997764
No 474
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.01 E-value=0.00033 Score=61.00 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=32.8
Q ss_pred cCCCCCcceeEeCCCCCchHHHHHHHhhhcC----ceEEEeccCcc
Q psy6098 240 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTE----CTFIRVSGSEL 281 (378)
Q Consensus 240 ~~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~----~~~i~~~~~~l 281 (378)
..+.+|..++|.|++||||||+++.|++.++ .+.+.+++..+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 3456778899999999999999999999876 23666665433
No 475
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.00 E-value=0.00046 Score=60.26 Aligned_cols=31 Identities=32% Similarity=0.306 Sum_probs=26.0
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
+..++|.|++||||||+++.|+. ++.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 45789999999999999999998 66655544
No 476
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.00 E-value=0.00022 Score=66.38 Aligned_cols=34 Identities=29% Similarity=0.306 Sum_probs=29.4
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEecccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELV 38 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~ 38 (378)
+++||||||||++|+.||..++..++.++.-.+.
T Consensus 9 ~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy 42 (323)
T 3crm_A 9 FLMGPTAAGKTDLAMALADALPCELISVDSALIY 42 (323)
T ss_dssp EEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTB
T ss_pred EEECCCCCCHHHHHHHHHHHcCCcEEeccchhhh
Confidence 5789999999999999999999999888665443
No 477
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.00 E-value=0.00032 Score=66.23 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=25.9
Q ss_pred CCcceeEeCCCCCchHHHHHHHhhhcC-ce
Q psy6098 244 QPKGVLLYGPPGTGKTLLARAVAHHTE-CT 272 (378)
Q Consensus 244 ~~~~~ll~Gp~G~GKTtl~~~ia~~~~-~~ 272 (378)
+|+.++|+||||+|||||+++|+|... +.
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~ 243 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEIL 243 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCC
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccc
Confidence 567899999999999999999999887 54
No 478
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.00 E-value=0.00017 Score=64.52 Aligned_cols=27 Identities=11% Similarity=-0.042 Sum_probs=23.9
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEE
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIR 31 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~ 31 (378)
+++||||+||||+|+.|++.++..++.
T Consensus 33 ~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 33 IFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 578999999999999999999877654
No 479
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.00 E-value=0.00028 Score=61.47 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=25.8
Q ss_pred CCCCCCCChhHHHHHHHhhccC----ceEEEeccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTE----CTFIRVSGSEL 37 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~----~~~~~v~~~~~ 37 (378)
+++|+||+|||++++.++..++ .+++.+++..+
T Consensus 29 ~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 29 WLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4689999999999999999875 34666665444
No 480
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.97 E-value=0.00051 Score=63.85 Aligned_cols=34 Identities=38% Similarity=0.630 Sum_probs=30.0
Q ss_pred cceeEeCCCCCchHHHHHHHhhhcCceEEEeccC
Q psy6098 246 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 279 (378)
Q Consensus 246 ~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~~~~ 279 (378)
..++|+||+||||||+++.||..++..+|..+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 4689999999999999999999998888887653
No 481
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.97 E-value=0.0018 Score=62.61 Aligned_cols=31 Identities=26% Similarity=0.201 Sum_probs=26.5
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
.+.++..+++.||+|+||||++..+|+.+..
T Consensus 94 ~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 94 VLKDRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp CCCSSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3336788999999999999999999998754
No 482
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.97 E-value=0.00022 Score=62.82 Aligned_cols=33 Identities=15% Similarity=0.027 Sum_probs=26.3
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQ 39 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~ 39 (378)
++.||||+||||+|+.||..++..+ ++..+++.
T Consensus 4 ~l~G~~GsGKsT~a~~La~~lg~~~--i~~dd~~r 36 (223)
T 2xb4_A 4 LIFGPNGSGKGTQGNLVKDKYSLAH--IESGGIFR 36 (223)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTCEE--EEHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeE--EchHHHHH
Confidence 4789999999999999999999766 44445543
No 483
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.96 E-value=0.0034 Score=58.26 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=25.7
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhh
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHH 268 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~ 268 (378)
|+.+|..++|.|+||+|||+|+..+|..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 7899999999999999999999988854
No 484
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.95 E-value=0.00013 Score=62.03 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=20.2
Q ss_pred CCCCCCCChhHHHHHHHhhccC
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTE 26 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~ 26 (378)
++.|||||||||+|+.|++.++
T Consensus 5 ~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 5 IVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEECTTSCHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999886
No 485
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.95 E-value=0.00034 Score=61.86 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=26.7
Q ss_pred CCCCCCCChhHHHHHHHhhccCceEEEeccccccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTECTFIRVSGSELVQ 39 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~~~~~v~~~~~~~ 39 (378)
-++||||+||||+|+.||+.++..++ +..+++.
T Consensus 12 ~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdllR 44 (230)
T 3gmt_A 12 ILLGAPGAGKGTQANFIKEKFGIPQI--STGDMLR 44 (230)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHHH
T ss_pred eeECCCCCCHHHHHHHHHHHhCCCee--echHHHH
Confidence 36899999999999999999998775 4445543
No 486
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.95 E-value=0.00018 Score=60.79 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=27.2
Q ss_pred CCCCCCCChhHHHHHHHhhcc---CceEEEecccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT---ECTFIRVSGSE 36 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~---~~~~~~v~~~~ 36 (378)
+++|+|||||||+++.++..+ |.+++.+++..
T Consensus 9 ~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 9 WLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 468999999999999999988 88888776543
No 487
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.94 E-value=0.00039 Score=60.07 Aligned_cols=23 Identities=22% Similarity=0.024 Sum_probs=21.1
Q ss_pred CCCCCCCChhHHHHHHHhhccCc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHTEC 27 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~~~ 27 (378)
++.||||+||||+|+.||+.++.
T Consensus 8 ~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 8 AFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEcCCCCCHHHHHHHHHHHHhh
Confidence 46899999999999999999876
No 488
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.94 E-value=0.00024 Score=60.57 Aligned_cols=29 Identities=17% Similarity=-0.086 Sum_probs=25.2
Q ss_pred CCCCCCCChhHHHHHHHhhcc---CceEEEec
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT---ECTFIRVS 33 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~---~~~~~~v~ 33 (378)
+++|+||+||||+|+.+++.+ |.+++...
T Consensus 4 ~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 4 AFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 468999999999999999988 88887654
No 489
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.93 E-value=0.00012 Score=67.86 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=24.6
Q ss_pred CCCCCcceeEeCCCCCchHHHHHHHhhhcCce
Q psy6098 241 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 272 (378)
Q Consensus 241 ~~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~~ 272 (378)
.+.+|+.++|.||||+|||||+++|++...+.
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~ 200 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLR 200 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-----
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccccc
Confidence 34578899999999999999999999987654
No 490
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.93 E-value=0.00037 Score=60.75 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=25.9
Q ss_pred ceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
.++|.|||||||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 478999999999999999999887666555
No 491
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.92 E-value=0.00059 Score=58.04 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=26.1
Q ss_pred ceeEeCCCCCchHHHHHHHhhhc---CceEEEec
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHT---ECTFIRVS 277 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~---~~~~i~~~ 277 (378)
.++|.|++||||||+++.++..+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999987 66666554
No 492
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.91 E-value=0.00048 Score=59.12 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=25.4
Q ss_pred CcceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 245 PKGVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 245 ~~~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
+..++|.|++||||||+++.|+.. +..++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 447899999999999999999997 5545443
No 493
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.91 E-value=0.00053 Score=60.73 Aligned_cols=30 Identities=30% Similarity=0.339 Sum_probs=26.5
Q ss_pred CCCCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 242 IAQPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 242 ~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
+..|..++|.|||||||||+++.|+..+..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 346788999999999999999999998863
No 494
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.89 E-value=0.00036 Score=59.27 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=22.1
Q ss_pred ceeEeCCCCCchHHHHHHHhhhcC
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHTE 270 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~~ 270 (378)
.++|.|||||||||+++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998776
No 495
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.89 E-value=0.00064 Score=59.52 Aligned_cols=32 Identities=25% Similarity=0.123 Sum_probs=23.8
Q ss_pred CCCCCCCChhHHHHHHHhhcc---------CceEEEecccc
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT---------ECTFIRVSGSE 36 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~---------~~~~~~v~~~~ 36 (378)
.++||||||||++++.++..+ +...+.++..+
T Consensus 29 ~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 29 EVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 368999999999999999733 33466666544
No 496
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.89 E-value=0.00054 Score=59.05 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=26.2
Q ss_pred ceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
.++|.|++||||||+++.+++.++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 689999999999999999999888665543
No 497
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.89 E-value=0.00051 Score=63.13 Aligned_cols=28 Identities=25% Similarity=0.086 Sum_probs=23.2
Q ss_pred CCCCCCCChhHHHHHHHhhcc-CceEEEe
Q psy6098 5 LHPTWIVSGKTLLARAVAHHT-ECTFIRV 32 (378)
Q Consensus 5 ~~~~pPGtGKt~~a~~~a~~~-~~~~~~v 32 (378)
++.||||+||||+|+.++..+ +..++..
T Consensus 6 ~l~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (301)
T 1ltq_A 6 LTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (301)
T ss_dssp EEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred EEECCCCCCHHHHHHHHHHhCCCcEEecc
Confidence 468999999999999999974 7666543
No 498
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.88 E-value=0.00062 Score=59.87 Aligned_cols=30 Identities=27% Similarity=0.522 Sum_probs=25.5
Q ss_pred ceeEeCCCCCchHHHHHHHhhhcCceEEEe
Q psy6098 247 GVLLYGPPGTGKTLLARAVAHHTECTFIRV 276 (378)
Q Consensus 247 ~~ll~Gp~G~GKTtl~~~ia~~~~~~~i~~ 276 (378)
.++|.|||||||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999999887655544
No 499
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.88 E-value=0.00045 Score=59.90 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=24.7
Q ss_pred CCCCcceeEeCCCCCchHHHHHHHhhhcC
Q psy6098 242 IAQPKGVLLYGPPGTGKTLLARAVAHHTE 270 (378)
Q Consensus 242 ~~~~~~~ll~Gp~G~GKTtl~~~ia~~~~ 270 (378)
...+..++|.|++||||||+++.|+..++
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34577899999999999999999998754
No 500
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.88 E-value=0.00037 Score=60.39 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=24.9
Q ss_pred CCCcceeEeCCCCCchHHHHHHHhhhcCc
Q psy6098 243 AQPKGVLLYGPPGTGKTLLARAVAHHTEC 271 (378)
Q Consensus 243 ~~~~~~ll~Gp~G~GKTtl~~~ia~~~~~ 271 (378)
..+..++|.|++||||||+++.++..++.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999987653
Done!